Query psy16434
Match_columns 745
No_of_seqs 284 out of 2760
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 21:12:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0361|consensus 100.0 3.7E-70 7.9E-75 573.1 18.8 385 171-607 5-521 (543)
2 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 4.5E-67 9.7E-72 595.1 33.7 380 178-607 4-481 (484)
3 TIGR02339 thermosome_arch ther 100.0 9.1E-67 2E-71 597.6 33.5 384 174-607 4-518 (519)
4 KOG0363|consensus 100.0 3.6E-68 7.7E-73 555.0 16.6 386 170-607 2-517 (527)
5 TIGR02347 chap_CCT_zeta T-comp 100.0 3E-66 6.6E-71 593.6 33.8 384 174-607 4-524 (531)
6 PTZ00212 T-complex protein 1 s 100.0 4.1E-66 8.8E-71 593.5 33.8 387 170-608 6-525 (533)
7 TIGR02346 chap_CCT_theta T-com 100.0 6.1E-66 1.3E-70 591.6 35.2 392 174-609 5-520 (531)
8 cd03339 TCP1_epsilon TCP-1 (CT 100.0 5.3E-66 1.1E-70 592.0 34.5 389 171-607 6-526 (526)
9 cd03336 TCP1_beta TCP-1 (CTT o 100.0 7.7E-66 1.7E-70 589.4 34.6 381 176-608 3-513 (517)
10 TIGR02344 chap_CCT_gamma T-com 100.0 5.2E-66 1.1E-70 592.1 32.9 385 174-608 4-521 (525)
11 cd03340 TCP1_eta TCP-1 (CTT or 100.0 7.7E-66 1.7E-70 590.3 33.6 384 173-608 3-519 (522)
12 TIGR02345 chap_CCT_eta T-compl 100.0 6.1E-66 1.3E-70 590.9 32.2 384 173-608 5-519 (522)
13 TIGR02343 chap_CCT_epsi T-comp 100.0 8.8E-66 1.9E-70 590.4 33.3 386 173-606 12-529 (532)
14 TIGR02342 chap_CCT_delta T-com 100.0 1.3E-65 2.8E-70 587.6 34.5 375 186-608 8-516 (517)
15 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1.5E-65 3.2E-70 588.5 33.6 377 181-607 3-524 (527)
16 cd03337 TCP1_gamma TCP-1 (CTT 100.0 1.8E-65 3.9E-70 581.5 32.9 383 174-606 4-478 (480)
17 cd03338 TCP1_delta TCP-1 (CTT 100.0 3.4E-65 7.3E-70 584.2 33.6 378 181-607 3-514 (515)
18 TIGR02341 chap_CCT_beta T-comp 100.0 3.6E-65 7.8E-70 583.8 33.6 382 175-608 3-514 (519)
19 cd03343 cpn60 cpn60 chaperonin 100.0 4.5E-65 9.8E-70 583.5 32.8 384 174-607 3-515 (517)
20 cd03341 TCP1_theta TCP-1 (CTT 100.0 4.4E-64 9.5E-69 569.1 34.8 382 182-607 3-470 (472)
21 TIGR02340 chap_CCT_alpha T-com 100.0 3.9E-64 8.5E-69 577.6 33.6 379 180-608 6-529 (536)
22 KOG0358|consensus 100.0 5.9E-65 1.3E-69 533.1 17.7 374 186-607 25-532 (534)
23 cd00309 chaperonin_type_I_II c 100.0 3E-62 6.5E-67 553.3 36.2 371 186-606 7-463 (464)
24 KOG0362|consensus 100.0 1.1E-60 2.5E-65 516.1 28.3 389 174-613 13-525 (537)
25 COG0459 GroL Chaperonin GroEL 100.0 1.4E-59 3E-64 534.0 29.3 375 179-609 4-514 (524)
26 PTZ00114 Heat shock protein 60 100.0 3.4E-56 7.4E-61 512.8 29.1 358 181-609 17-540 (555)
27 PRK00013 groEL chaperonin GroE 100.0 8.1E-56 1.7E-60 507.8 30.0 353 186-607 9-522 (542)
28 PRK12849 groEL chaperonin GroE 100.0 8.4E-56 1.8E-60 507.7 29.4 352 186-608 9-522 (542)
29 PRK12852 groEL chaperonin GroE 100.0 6.2E-55 1.3E-59 501.7 29.1 352 186-607 10-523 (545)
30 PRK12850 groEL chaperonin GroE 100.0 6E-55 1.3E-59 501.1 28.9 353 186-608 10-523 (544)
31 cd03344 GroEL GroEL_like type 100.0 9.9E-55 2.2E-59 497.2 30.4 350 186-606 7-518 (520)
32 PRK12851 groEL chaperonin GroE 100.0 1.3E-54 2.9E-59 498.0 29.6 353 186-608 10-523 (541)
33 TIGR02348 GroEL chaperonin Gro 100.0 1.3E-54 2.8E-59 496.9 29.2 351 186-607 8-520 (524)
34 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 2.2E-54 4.8E-59 489.8 30.6 354 199-608 1-483 (485)
35 CHL00093 groEL chaperonin GroE 100.0 2.6E-54 5.6E-59 494.9 27.0 352 186-607 9-523 (529)
36 PLN03167 Chaperonin-60 beta su 100.0 1.1E-54 2.4E-59 502.1 23.7 354 187-609 66-581 (600)
37 PRK14104 chaperonin GroEL; Pro 100.0 1.7E-53 3.6E-58 489.1 27.6 352 186-607 10-523 (546)
38 KOG0360|consensus 100.0 6.7E-53 1.5E-57 453.1 14.9 379 180-609 13-536 (545)
39 KOG0364|consensus 100.0 1.4E-52 3E-57 447.1 15.5 387 171-607 4-519 (527)
40 KOG0359|consensus 100.0 4.2E-48 9E-53 412.3 12.9 364 187-605 17-511 (520)
41 KOG0357|consensus 100.0 3.8E-37 8.2E-42 320.5 18.8 331 171-607 11-394 (400)
42 KOG0356|consensus 100.0 6.9E-35 1.5E-39 320.6 18.4 351 179-603 17-531 (550)
43 KOG0361|consensus 100.0 3.3E-31 7.2E-36 279.6 8.5 275 460-737 72-375 (543)
44 TIGR02344 chap_CCT_gamma T-com 100.0 3.8E-30 8.3E-35 295.8 6.2 271 460-732 68-362 (525)
45 cd03339 TCP1_epsilon TCP-1 (CT 100.0 3.3E-30 7.1E-35 296.4 4.9 272 444-721 59-353 (526)
46 KOG0364|consensus 100.0 2E-29 4.4E-34 270.0 9.6 288 444-733 55-363 (527)
47 TIGR02339 thermosome_arch ther 100.0 2.1E-29 4.6E-34 289.3 10.3 287 443-732 51-361 (519)
48 TIGR02343 chap_CCT_epsi T-comp 100.0 4.5E-30 9.8E-35 295.4 4.2 272 444-721 63-357 (532)
49 PTZ00212 T-complex protein 1 s 100.0 9.8E-30 2.1E-34 292.8 5.2 282 444-732 63-367 (533)
50 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1.8E-29 3.9E-34 289.7 6.1 283 443-732 50-355 (517)
51 cd03343 cpn60 cpn60 chaperonin 100.0 4.2E-29 9.1E-34 286.8 8.1 286 444-732 51-358 (517)
52 TIGR02347 chap_CCT_zeta T-comp 100.0 2.8E-29 6.1E-34 288.6 5.6 286 444-732 52-367 (531)
53 KOG0362|consensus 99.9 1.9E-28 4.2E-33 266.3 10.0 285 442-732 60-362 (537)
54 KOG0359|consensus 99.9 2.3E-29 5E-34 269.3 2.7 269 460-734 69-360 (520)
55 cd03340 TCP1_eta TCP-1 (CTT or 99.9 6.5E-29 1.4E-33 285.5 6.3 290 444-736 52-370 (522)
56 TIGR02341 chap_CCT_beta T-comp 99.9 1.5E-28 3.2E-33 282.1 6.4 286 443-732 51-356 (519)
57 cd03335 TCP1_alpha TCP-1 (CTT 99.9 4.1E-28 8.8E-33 279.2 9.1 287 443-732 43-359 (527)
58 KOG0358|consensus 99.9 4.7E-28 1E-32 255.6 8.2 292 442-739 60-388 (534)
59 TIGR02342 chap_CCT_delta T-com 99.9 1.4E-27 3.1E-32 274.0 8.7 282 444-728 45-353 (517)
60 TIGR02340 chap_CCT_alpha T-com 99.9 8.2E-28 1.8E-32 277.1 5.4 286 444-732 48-363 (536)
61 cd03334 Fab1_TCP TCP-1 like do 99.9 9.5E-27 2.1E-31 245.4 12.2 147 568-721 50-197 (261)
62 cd03338 TCP1_delta TCP-1 (CTT 99.9 1E-27 2.2E-32 275.2 4.5 285 444-731 44-355 (515)
63 TIGR02345 chap_CCT_eta T-compl 99.9 2E-27 4.3E-32 273.2 4.2 270 460-732 69-361 (522)
64 KOG0360|consensus 99.9 4.9E-27 1.1E-31 253.9 6.8 277 460-741 71-384 (545)
65 TIGR02346 chap_CCT_theta T-com 99.9 4.2E-26 9.1E-31 262.6 8.6 281 444-731 54-357 (531)
66 KOG0363|consensus 99.9 1.1E-25 2.3E-30 236.8 8.3 274 460-738 72-372 (527)
67 COG0459 GroL Chaperonin GroEL 99.9 8.5E-24 1.8E-28 241.5 6.8 267 460-732 63-353 (524)
68 cd03342 TCP1_zeta TCP-1 (CTT o 99.9 9.7E-24 2.1E-28 240.6 3.5 257 444-732 48-324 (484)
69 PF00118 Cpn60_TCP1: TCP-1/cpn 99.9 1.1E-23 2.5E-28 239.0 1.0 282 443-730 24-322 (485)
70 cd03337 TCP1_gamma TCP-1 (CTT 99.8 1.7E-22 3.6E-27 230.3 1.6 230 460-732 68-321 (480)
71 cd03333 chaperonin_like chaper 99.8 1.7E-20 3.6E-25 191.3 14.1 162 362-526 2-207 (209)
72 cd03341 TCP1_theta TCP-1 (CTT 99.8 4.7E-21 1E-25 218.0 3.4 246 444-732 44-310 (472)
73 cd00309 chaperonin_type_I_II c 99.8 1.1E-20 2.3E-25 214.7 4.6 244 443-732 43-307 (464)
74 cd03334 Fab1_TCP TCP-1 like do 99.8 3.7E-19 7.9E-24 187.9 15.8 147 379-526 19-251 (261)
75 PRK12849 groEL chaperonin GroE 99.7 1.1E-18 2.3E-23 201.5 7.2 234 460-728 62-331 (542)
76 cd03344 GroEL GroEL_like type 99.7 1.6E-18 3.5E-23 199.3 8.6 238 460-732 60-333 (520)
77 PRK00013 groEL chaperonin GroE 99.7 1.9E-18 4.1E-23 199.4 8.1 239 460-732 62-335 (542)
78 PRK12851 groEL chaperonin GroE 99.7 1.3E-18 2.9E-23 200.7 6.4 239 460-732 63-336 (541)
79 TIGR02348 GroEL chaperonin Gro 99.7 4.3E-18 9.3E-23 196.0 8.1 233 460-727 61-329 (524)
80 cd03333 chaperonin_like chaper 99.7 5E-18 1.1E-22 173.1 7.6 126 566-732 44-171 (209)
81 PTZ00114 Heat shock protein 60 99.7 6.3E-18 1.4E-22 195.8 7.9 228 461-722 79-339 (555)
82 PRK12850 groEL chaperonin GroE 99.7 1E-17 2.2E-22 193.6 7.9 237 460-732 63-336 (544)
83 KOG0230|consensus 99.7 1.5E-16 3.4E-21 191.0 10.5 153 562-721 358-510 (1598)
84 PRK12852 groEL chaperonin GroE 99.7 6.6E-17 1.4E-21 187.0 6.7 229 460-722 67-327 (545)
85 PLN03167 Chaperonin-60 beta su 99.6 2.4E-16 5.3E-21 183.5 6.4 228 460-721 118-380 (600)
86 PRK14104 chaperonin GroEL; Pro 99.6 3.1E-16 6.7E-21 181.3 6.8 238 460-732 67-336 (546)
87 CHL00093 groEL chaperonin GroE 99.6 2.7E-16 5.8E-21 181.4 5.9 233 460-727 62-331 (529)
88 KOG0357|consensus 99.4 7.4E-14 1.6E-18 147.1 2.3 83 644-726 144-228 (400)
89 KOG0230|consensus 98.4 6.4E-07 1.4E-11 109.7 8.5 147 379-526 333-564 (1598)
90 PHA00616 hypothetical protein 88.5 0.31 6.6E-06 38.1 1.9 38 41-80 1-38 (44)
91 PF05605 zf-Di19: Drought indu 70.0 2.3 4.9E-05 34.3 1.1 40 40-91 1-40 (54)
92 cd00851 MTH1175 This uncharact 64.2 16 0.00035 32.5 5.6 39 646-685 54-92 (103)
93 TIGR03829 YokU_near_AblA uncha 62.9 2.7 5.8E-05 37.8 0.3 44 43-93 1-46 (89)
94 PF02579 Nitro_FeMo-Co: Dinitr 62.9 17 0.00037 31.7 5.5 38 647-685 45-82 (94)
95 cd00562 NifX_NifB This CD repr 61.8 21 0.00046 31.5 6.0 38 647-685 53-90 (102)
96 PHA02768 hypothetical protein; 58.2 5.6 0.00012 32.7 1.3 41 41-96 5-45 (55)
97 COG1433 Uncharacterized conser 57.8 30 0.00066 32.9 6.4 52 647-699 57-108 (121)
98 PRK06266 transcription initiat 57.5 5.4 0.00012 40.3 1.4 38 35-94 111-148 (178)
99 TIGR03830 CxxCG_CxxCG_HTH puta 57.0 2.8 6.2E-05 39.1 -0.7 41 44-92 1-41 (127)
100 TIGR00373 conserved hypothetic 56.5 5.4 0.00012 39.5 1.2 38 35-94 103-140 (158)
101 COG5189 SFP1 Putative transcri 55.2 9 0.0002 41.7 2.7 78 17-95 324-411 (423)
102 PHA00732 hypothetical protein 54.6 5.6 0.00012 34.9 0.8 61 41-122 1-61 (79)
103 TIGR01385 TFSII transcription 45.9 11 0.00023 41.4 1.4 43 39-94 256-298 (299)
104 cd01143 YvrC Periplasmic bindi 44.8 49 0.0011 32.5 6.0 52 648-699 53-111 (195)
105 TIGR03831 YgiT_finger YgiT-typ 44.6 7.5 0.00016 29.6 0.1 40 44-92 1-42 (46)
106 cd01144 BtuF Cobalamin binding 43.8 61 0.0013 33.3 6.7 52 648-699 50-108 (245)
107 KOG2593|consensus 43.3 5.7 0.00012 45.0 -1.1 38 39-93 126-164 (436)
108 PF12756 zf-C2H2_2: C2H2 type 41.2 8.9 0.00019 33.6 0.0 49 43-93 1-61 (100)
109 PF13894 zf-C2H2_4: C2H2-type 41.1 9.8 0.00021 24.3 0.2 24 42-67 1-24 (24)
110 KOG0909|consensus 40.8 9.7 0.00021 43.2 0.2 56 25-97 136-209 (500)
111 PRK09534 btuF corrinoid ABC tr 40.3 60 0.0013 36.2 6.4 52 648-699 112-170 (359)
112 TIGR03659 IsdE heme ABC transp 39.3 58 0.0013 34.8 5.9 52 648-699 84-141 (289)
113 cd00852 NifB NifB belongs to a 39.2 85 0.0019 28.4 6.2 31 654-685 64-94 (106)
114 PF13912 zf-C2H2_6: C2H2-type 38.6 10 0.00022 25.7 -0.0 25 41-67 1-25 (27)
115 cd00853 NifX NifX belongs to a 36.5 1.1E+02 0.0024 27.4 6.5 31 654-685 60-90 (102)
116 cd04743 NPD_PKS 2-Nitropropane 35.6 1.1E+02 0.0023 34.1 7.2 57 645-702 72-128 (320)
117 PTZ00085 40S ribosomal protein 33.3 20 0.00044 31.0 0.9 28 132-159 2-32 (73)
118 TIGR02663 nifX nitrogen fixati 32.6 1.3E+02 0.0028 28.1 6.3 45 654-699 62-110 (119)
119 smart00531 TFIIE Transcription 32.4 22 0.00047 34.7 1.1 43 35-94 93-135 (147)
120 PF13909 zf-H2C2_5: C2H2-type 32.3 17 0.00037 24.0 0.3 23 42-67 1-23 (24)
121 cd01141 TroA_d Periplasmic bin 32.0 98 0.0021 30.5 5.8 50 648-697 62-119 (186)
122 cd01138 FeuA Periplasmic bindi 31.8 97 0.0021 31.9 6.0 51 648-699 59-113 (248)
123 PF13465 zf-H2C2_2: Zinc-finge 30.7 20 0.00043 24.5 0.4 23 60-93 3-25 (26)
124 PHA00733 hypothetical protein 29.9 26 0.00057 33.5 1.2 39 40-93 72-110 (128)
125 PF12846 AAA_10: AAA-like doma 29.7 1.3E+02 0.0029 31.3 6.7 59 641-699 239-302 (304)
126 TIGR03151 enACPred_II putative 29.0 1.8E+02 0.0039 31.9 7.6 58 645-702 77-134 (307)
127 PRK03379 vitamin B12-transport 27.7 1.1E+02 0.0024 32.2 5.6 52 648-699 65-123 (260)
128 PRK07114 keto-hydroxyglutarate 27.1 3.4E+02 0.0074 28.5 8.9 58 645-704 81-139 (222)
129 cd00730 rubredoxin Rubredoxin; 26.8 15 0.00032 29.6 -0.9 44 41-92 1-44 (50)
130 PF01081 Aldolase: KDPG and KH 26.7 2.1E+02 0.0046 29.5 7.2 56 647-704 72-128 (196)
131 cd01140 FatB Siderophore bindi 26.2 1.4E+02 0.0031 31.1 6.2 52 648-699 65-123 (270)
132 PRK06015 keto-hydroxyglutarate 26.0 3E+02 0.0065 28.5 8.2 57 646-704 67-124 (201)
133 cd01139 TroA_f Periplasmic bin 25.6 1.5E+02 0.0033 32.2 6.4 52 648-699 84-148 (342)
134 COG1504 Uncharacterized conser 25.3 2.8E+02 0.006 26.3 6.8 50 650-699 56-111 (121)
135 TIGR01562 FdhE formate dehydro 25.1 33 0.00071 37.7 1.0 16 41-56 184-199 (305)
136 TIGR01182 eda Entner-Doudoroff 24.8 3.5E+02 0.0075 28.1 8.4 57 645-703 70-127 (204)
137 PRK06552 keto-hydroxyglutarate 24.3 3.6E+02 0.0079 28.0 8.5 57 645-703 78-135 (213)
138 KOG3576|consensus 23.3 19 0.00041 37.1 -1.1 30 53-93 155-184 (267)
139 PF09237 GAGA: GAGA factor; I 23.1 30 0.00065 28.1 0.2 34 37-72 20-53 (54)
140 PF03966 Trm112p: Trm112p-like 22.7 8.7 0.00019 32.5 -3.1 52 42-96 8-67 (68)
141 cd00636 TroA-like Helical back 22.6 1.8E+02 0.0038 26.2 5.3 50 648-697 54-112 (148)
142 PF01497 Peripla_BP_2: Peripla 22.6 1.9E+02 0.0041 29.2 6.1 52 648-699 53-112 (238)
143 PF03060 NMO: Nitronate monoox 22.5 2.1E+02 0.0046 31.5 6.8 59 644-702 102-161 (330)
144 PHA00733 hypothetical protein 21.7 27 0.00059 33.4 -0.4 42 41-94 40-85 (128)
145 cd01146 FhuD Fe3+-siderophore 21.5 2.2E+02 0.0048 29.4 6.5 52 648-699 58-115 (256)
146 PRK14812 hypothetical protein; 21.2 2.1E+02 0.0046 27.2 5.5 48 646-695 8-55 (119)
147 cd01149 HutB Hemin binding pro 21.0 2.1E+02 0.0046 29.2 6.1 52 648-699 51-110 (235)
148 PF09986 DUF2225: Uncharacteri 20.9 38 0.00081 35.2 0.5 51 40-92 4-58 (214)
149 KOG3623|consensus 20.6 61 0.0013 39.3 2.1 43 39-95 279-322 (1007)
No 1
>KOG0361|consensus
Probab=100.00 E-value=3.7e-70 Score=573.08 Aligned_cols=385 Identities=26% Similarity=0.434 Sum_probs=359.2
Q ss_pred ceeecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHH
Q psy16434 171 PAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGS 250 (745)
Q Consensus 171 ~~~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s 250 (745)
|..++++|++..+| ..++.+||++|.++++.++|||||+||||+|++..|+++|||||+||||-|++-||+||.|++++
T Consensus 5 ~ii~lkegtd~sqG-k~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVdia 83 (543)
T KOG0361|consen 5 PIILLKEGTDPSQG-KGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVDIA 83 (543)
T ss_pred CEEEeecccCcccC-chhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHHHH
Confidence 57789999999999 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHH
Q psy16434 251 QMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPS 330 (745)
Q Consensus 251 ~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~ 330 (745)
++||.++||| |||||+||+|+|+++.-+++.|+||.
T Consensus 84 ~sQDaEVGDG--------------------------------------------TTSVv~la~E~lk~~Kpfiedgv~~~ 119 (543)
T KOG0361|consen 84 RSQDAEVGDG--------------------------------------------TTSVVLLAAEFLKEAKPFIEDGVHPQ 119 (543)
T ss_pred hhccccccCC--------------------------------------------ceeEeeeHHHHHHhhhhHhhcCCCHH
Confidence 9999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccccc--CcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccce
Q psy16434 331 EIVNGYKLALAKTLEILPTLTCFEVKD--VRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNV 407 (745)
Q Consensus 331 ~I~~g~~~a~~~~l~~L~~~s~~~~~~--~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I 407 (745)
.|+.+|++|...+++.|+++++.+... ..-++.|+++|.|+++||++++ .++|+++++||+..+.. ..++++|
T Consensus 120 ~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~----~l~~~mI 195 (543)
T KOG0361|consen 120 LIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDN----DLDLNMI 195 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcc----ccchhhc
Confidence 999999999999999999998774322 1236789999999999999986 79999999999998863 4678899
Q ss_pred EEEEccCCCcccceeEeeEEEeeccc-----CCceeeeCceEEEeccCCCccccccC-----------------------
Q psy16434 408 RITKILGSGLFNSEIVQGMVFKRSVE-----GDITKQTKAKIAVYTCPVDIATTETK----------------------- 459 (745)
Q Consensus 408 ~I~ki~Ggs~~dS~lv~G~~l~~~~~-----~~~~~i~nakIlil~~~Le~~k~e~k----------------------- 459 (745)
.|+|++||+++||.+|+|+.|++.|+ .+|+++.||||+++|.+||++.++.+
T Consensus 196 GIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~ 275 (543)
T KOG0361|consen 196 GIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIY 275 (543)
T ss_pred ceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999775 36999999999999999998776432
Q ss_pred -----------------------------------------------------------CCCCcccccccccEEEEEECC
Q psy16434 460 -----------------------------------------------------------TPPAASELGYADSVAVDELGD 480 (745)
Q Consensus 460 -----------------------------------------------------------~~p~a~~LG~a~~vq~~eiGd 480 (745)
.+..++.||.|+.++++.+|.
T Consensus 276 ~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~ 355 (543)
T KOG0361|consen 276 DKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGG 355 (543)
T ss_pred HHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcc
Confidence 567889999999999999999
Q ss_pred eeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH---------------------------------
Q psy16434 481 TAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK--------------------------------- 527 (745)
Q Consensus 481 tsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~--------------------------------- 527 (745)
++|.+|+||.. .++||+++||+-+..++|.+|++|||+++++.+++
T Consensus 356 eRyN~Fegcp~-aktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~ 434 (543)
T KOG0361|consen 356 ERYNLFEGCPK-AKTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLF 434 (543)
T ss_pred hhhhhhcCCCc-cceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHHHH
Confidence 99999999987 88999999999999999999999999999999987
Q ss_pred ---------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchh
Q psy16434 528 ---------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANT 598 (745)
Q Consensus 528 ---------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~m 598 (745)
.|||+|++|||+|.++++.||+..|++|..|+|+|++++ .+.|++...||||..||..++..|++++++
T Consensus 435 i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e--~i~dn~~~~VwEP~~VK~Nai~aateAa~l 512 (543)
T KOG0361|consen 435 INAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTE--GIADNFEKFVWEPSIVKINAITAATEAACL 512 (543)
T ss_pred HHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeeccc--chhhHHHhhccChHHHHHHHHHHHHHhhhh
Confidence 689999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred hccccccee
Q psy16434 599 ILQQTKAKI 607 (745)
Q Consensus 599 il~IDn~kI 607 (745)
++.+|..+.
T Consensus 513 IlsvDeTik 521 (543)
T KOG0361|consen 513 ILSVDETIK 521 (543)
T ss_pred eEehhhhhc
Confidence 999986544
No 2
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.5e-67 Score=595.06 Aligned_cols=380 Identities=25% Similarity=0.396 Sum_probs=353.8
Q ss_pred ccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchh
Q psy16434 178 YDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEM 257 (745)
Q Consensus 178 ~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~ 257 (745)
+.+..+| .+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||||+|+++||+++|++++|++||+++
T Consensus 4 ~~~~~~~-~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~ 82 (484)
T cd03342 4 KAEVLRR-GQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDIT 82 (484)
T ss_pred CcccccH-HHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHh
Confidence 4455666 589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q psy16434 258 GDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYK 337 (745)
Q Consensus 258 GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~ 337 (745)
||| |||+++||++||+++.++++.|+||..|++||+
T Consensus 83 GDG--------------------------------------------TTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~ 118 (484)
T cd03342 83 GDG--------------------------------------------TTSNVLLIGELLKQAERYIQEGVHPRIITEGFE 118 (484)
T ss_pred CCC--------------------------------------------hhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999 999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCC
Q psy16434 338 LALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSG 416 (745)
Q Consensus 338 ~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs 416 (745)
.|++.+++.|++++.+...+ .+.+.|.++|++++++|+.+. .++|++|+++|+..++++. +.+|+++|+|+++.||+
T Consensus 119 ~a~~~~~~~L~~~s~~v~~~-~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~-~~~~~~~I~i~ki~ggs 196 (484)
T cd03342 119 LAKNKALKFLESFKVPVEID-TDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPD-EPIDLHMVEIMQMQHKS 196 (484)
T ss_pred HHHHHHHHHHHHhcccCCCC-CCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcC-CccChhHeEEEEecCCC
Confidence 99999999999998764221 367789999999999998874 7999999999999998752 37899999999999999
Q ss_pred cccceeEeeEEEeecccCC--ceeeeCceEEEeccCCCccccccC-----------------------------------
Q psy16434 417 LFNSEIVQGMVFKRSVEGD--ITKQTKAKIAVYTCPVDIATTETK----------------------------------- 459 (745)
Q Consensus 417 ~~dS~lv~G~~l~~~~~~~--~~~i~nakIlil~~~Le~~k~e~k----------------------------------- 459 (745)
++||++++|++|++++.++ |++++||+|++++++|++.+++.+
T Consensus 197 ~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~~~~~~~~~~~lvi~~~~I~~~al~~l~~~~I~av~~~~~ 276 (484)
T cd03342 197 DSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYSVVINQKGIDPPSLDMLAKEGILALRRAKR 276 (484)
T ss_pred hhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCCccccCcEEEEEEEEeCCCccHHHHHHHHHCCCeEEEeCCH
Confidence 9999999999999999764 899999999999999999987542
Q ss_pred ------------------CCCCcccccccccEEEEEECCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHH
Q psy16434 460 ------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNT 521 (745)
Q Consensus 460 ------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~v 521 (745)
+++++.+||+|++++++++|++++++|.|++. .+++||++||+|+.+++|.+|+++||+++
T Consensus 277 ~~l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~-~~~~tI~lrg~t~~~l~E~er~l~DAl~~ 355 (484)
T cd03342 277 RNMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKN-PKSCTILIKGPNDHTITQIKDAIRDGLRA 355 (484)
T ss_pred HHHHHHHHHhCCEEecccccCChhhCcccceEEEEEECCeEEEEEECCCC-CcEEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 77888899999999999999999999999876 78999999999999999999999999999
Q ss_pred HHHHHH------------------------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccc
Q psy16434 522 FKGITK------------------------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTY 559 (745)
Q Consensus 522 lk~~~~------------------------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~ 559 (745)
++++++ .+|++|++|||+|+.+++++|+..|.++..++
T Consensus 356 vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~ 435 (484)
T cd03342 356 VKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVG 435 (484)
T ss_pred HHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCce
Confidence 999887 67899999999999999999998988877789
Q ss_pred eeeecCCCcceeecccccccccccchhhHhhhhhhcchhhccccccee
Q psy16434 560 GFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 560 GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kI 607 (745)
|+|+.++ ++.||...||+||+.++..+++.|++.+.|+++||++.+
T Consensus 436 Gid~~~g--~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~ 481 (484)
T cd03342 436 GVDLDTG--EPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIR 481 (484)
T ss_pred eeeCCCC--cccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhh
Confidence 9999999 999999999999999999999999999999999999754
No 3
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=9.1e-67 Score=597.57 Aligned_cols=384 Identities=29% Similarity=0.505 Sum_probs=355.5
Q ss_pred ecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhh
Q psy16434 174 IFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQ 253 (745)
Q Consensus 174 ~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~q 253 (745)
+++++.+.++| ++++..|++||..|+++++|||||+||+|||+++.|+++|||||+||||+|+++||+++|+++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 82 (519)
T TIGR02339 4 ILKEGTQRTKG-RDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQ 82 (519)
T ss_pred cccCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 45777778888 47999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHH
Q psy16434 254 EEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIV 333 (745)
Q Consensus 254 d~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~ 333 (745)
|+++||| |||+++|+++||+++.+|+++|+||+.|+
T Consensus 83 d~~~GDG--------------------------------------------Ttt~viL~~~ll~~~~~li~~gi~p~~Ii 118 (519)
T TIGR02339 83 DAEVGDG--------------------------------------------TTTAVVLAGELLEKAEDLLEQGIHPTVII 118 (519)
T ss_pred HHHhCCC--------------------------------------------cccHHHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccC-C-ChhhHHHHHHHHHHhhcCC-CCC--CCCccceE
Q psy16434 334 NGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQY-G-NEDFLTDLITKACVSILPD-GSS--SFNVDNVR 408 (745)
Q Consensus 334 ~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~-~-~~~~ls~LivdAv~~v~~~-~~~--~~dl~~I~ 408 (745)
+||+.|++.++++|++++.+. +..+++.|.++|+|+++||+. + +.++|++|+++|+.++++. ..+ .+|+++|+
T Consensus 119 ~g~~~a~~~~~~~L~~~s~~v--~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~ 196 (519)
T TIGR02339 119 EGYRKAAEKALEIIDEIATKI--SPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIK 196 (519)
T ss_pred HHHHHHHHHHHHHHHHhcccc--CcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeE
Confidence 999999999999999998763 334577899999999999999 4 4799999999999999852 123 58889999
Q ss_pred EEEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC---------------------------
Q psy16434 409 ITKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK--------------------------- 459 (745)
Q Consensus 409 I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k--------------------------- 459 (745)
|+++.|++++||++++|++|++++.+ +|++++||+|++++++||+.+++.+
T Consensus 197 i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~ 276 (519)
T TIGR02339 197 IEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVD 276 (519)
T ss_pred EEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999976 5899999999999999999887632
Q ss_pred -------------------------------------------------------CCCCcccccccccEEEEEECCeeEE
Q psy16434 460 -------------------------------------------------------TPPAASELGYADSVAVDELGDTAVV 484 (745)
Q Consensus 460 -------------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvt 484 (745)
+++.+..||+|+++++.++|+++++
T Consensus 277 ~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~ 356 (519)
T TIGR02339 277 KIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMT 356 (519)
T ss_pred HHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEE
Confidence 6677888999999999999999999
Q ss_pred EEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-------------------------------------
Q psy16434 485 VFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------- 527 (745)
Q Consensus 485 i~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------- 527 (745)
+|.|+.. ..++||++||+++.+++|++|+++||+++++++++
T Consensus 357 ~~~~~~~-~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~ 435 (519)
T TIGR02339 357 FVEGCKN-PKAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAF 435 (519)
T ss_pred EEEcCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 9999875 78999999999999999999999999999999886
Q ss_pred -----HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhccc
Q psy16434 528 -----VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQ 602 (745)
Q Consensus 528 -----~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~I 602 (745)
.+|++|++|||+|+.+++++|+..|..+..++|+|+.++ ++.||...||+||+.++..+++.|++.+.+++++
T Consensus 436 a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g--~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 513 (519)
T TIGR02339 436 ADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTG--EIEDMLELGVIEPLRVKEQAIKSATEAATMILRI 513 (519)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCC--CccchhhccceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 679999999999999999999999887777899999999 9999999999999999999999999999999999
Q ss_pred cccee
Q psy16434 603 TKAKI 607 (745)
Q Consensus 603 Dn~kI 607 (745)
|++.+
T Consensus 514 d~ii~ 518 (519)
T TIGR02339 514 DDVIA 518 (519)
T ss_pred hHHhh
Confidence 98653
No 4
>KOG0363|consensus
Probab=100.00 E-value=3.6e-68 Score=555.04 Aligned_cols=386 Identities=27% Similarity=0.440 Sum_probs=359.7
Q ss_pred CceeecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCC--CCeEEecCHHHHHhhccccChhhHHHH
Q psy16434 170 LPAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHI--DKLFVTNDAATIIRELEIEHPAAKLII 247 (745)
Q Consensus 170 ~~~~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~--g~i~ITnDG~tIlk~l~~~hP~akll~ 247 (745)
.|..+|+.+.++++| +.|+++.+.++.+++|+|||||||+||||||+... |.+.|||||+||||++.+.+|+||+++
T Consensus 2 ~p~~i~~~~~~eErg-e~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv 80 (527)
T KOG0363|consen 2 NPVQIFKDGATEERG-ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLV 80 (527)
T ss_pred Chhhhhcccchhhhh-hhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhhee
Confidence 366789999999999 69999999999999999999999999999998654 779999999999999999999999999
Q ss_pred HHHhhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCC
Q psy16434 248 LGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGL 327 (745)
Q Consensus 248 ~~s~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gi 327 (745)
+.|+-||+++||| ||||++||++||++|.+|+...|
T Consensus 81 ~~S~vQD~EvGDG--------------------------------------------TTSV~vlaaeLlreAeklv~~ki 116 (527)
T KOG0363|consen 81 DISKVQDDEVGDG--------------------------------------------TTSVTVLAAELLREAEKLVNQKI 116 (527)
T ss_pred ccccccccccCCC--------------------------------------------ceehHHHHHHHHHHHHHHHhccc
Confidence 9999999999999 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhccccccccccc-CcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCcc
Q psy16434 328 TPSEIVNGYKLALAKTLEILPTLTCFEVKD-VRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVD 405 (745)
Q Consensus 328 hP~~I~~g~~~a~~~~l~~L~~~s~~~~~~-~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~ 405 (745)
||++|+.|||.|...|++.|.+.++....+ ..-+++|+++|+|.|+||++++ .++|++|+++|+.++. |+-|++
T Consensus 117 HPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLk----Gs~nL~ 192 (527)
T KOG0363|consen 117 HPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLK----GSTNLE 192 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc----CCCCcc
Confidence 999999999999999999998877652211 1237889999999999999997 6999999999999985 567899
Q ss_pred ceEEEEccCCCcccceeEeeEEEeecc-cCCceeeeCceEEEeccCCCccccccC-------------------------
Q psy16434 406 NVRITKILGSGLFNSEIVQGMVFKRSV-EGDITKQTKAKIAVYTCPVDIATTETK------------------------- 459 (745)
Q Consensus 406 ~I~I~ki~Ggs~~dS~lv~G~~l~~~~-~~~~~~i~nakIlil~~~Le~~k~e~k------------------------- 459 (745)
.|+|+|+.||+++||++-+|+++++.+ .++|++++||+|||-|.++|..|.+..
T Consensus 193 ~IqIIK~~Gg~l~dSfLDeGFlL~K~igv~qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~ 272 (527)
T KOG0363|consen 193 AIQIIKKLGGKLEDSFLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKE 272 (527)
T ss_pred ceeeehhcCCccccccccccceeccccCCCCcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 468999999999999999998887531
Q ss_pred ----------------------------------------------------------CCCCcccccccccEEEEEECCe
Q psy16434 460 ----------------------------------------------------------TPPAASELGYADSVAVDELGDT 481 (745)
Q Consensus 460 ----------------------------------------------------------~~p~a~~LG~a~~vq~~eiGdt 481 (745)
++|....||.|+.+++..+|++
T Consensus 273 KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLalvtGGeI~STFd~p~~~klG~C~~IeeimiGed 352 (527)
T KOG0363|consen 273 KVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGED 352 (527)
T ss_pred HHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhhcccceeeeccCCcchhccccchhhHHHhcCcc
Confidence 8899999999999999999999
Q ss_pred eEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------------------------
Q psy16434 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------------------------- 527 (745)
Q Consensus 482 svti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------------------------- 527 (745)
++..|.|+++ +.+|||++||+|+.+++|.+|++|||||++....+
T Consensus 353 ~li~FSGv~~-GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~Ai 431 (527)
T KOG0363|consen 353 KLIKFSGVKL-GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAI 431 (527)
T ss_pred ceeeeccccc-ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHH
Confidence 9999999998 89999999999999999999999999999988775
Q ss_pred --------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhh
Q psy16434 528 --------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTI 599 (745)
Q Consensus 528 --------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mi 599 (745)
.+|..|++|||+|+.+++++|+..|++|...+|+|+.+| .|.+|...||.|++.||..++..|.+.+.|+
T Consensus 432 eAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G--~i~dm~~~Gi~es~~vK~~vv~sasEaae~i 509 (527)
T KOG0363|consen 432 EAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNG--EIGDMRELGIVESLKVKQAVVSSASEAAEMI 509 (527)
T ss_pred HHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccC--chhhHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 579999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ccccccee
Q psy16434 600 LQQTKAKI 607 (745)
Q Consensus 600 l~IDn~kI 607 (745)
+++|++.-
T Consensus 510 lrvD~Iik 517 (527)
T KOG0363|consen 510 LRVDNIIK 517 (527)
T ss_pred Hhhhhhhh
Confidence 99998754
No 5
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3e-66 Score=593.57 Aligned_cols=384 Identities=24% Similarity=0.402 Sum_probs=353.4
Q ss_pred ecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhh
Q psy16434 174 IFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQ 253 (745)
Q Consensus 174 ~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~q 253 (745)
+++++.+..+| ++++..|++||.+|+++++|||||+||||||+++.|+++|||||+||+|+|+++||+++|++++|++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~q 82 (531)
T TIGR02347 4 LLNPKAESLRR-DAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQ 82 (531)
T ss_pred cccCCcccccH-HHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHh
Confidence 34566666677 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHH
Q psy16434 254 EEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIV 333 (745)
Q Consensus 254 d~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~ 333 (745)
|+++||| |||+++||++||++|.+||++|+||+.|+
T Consensus 83 d~~~GDG--------------------------------------------TTtvvvLa~~Ll~~a~~li~~gihp~~Ii 118 (531)
T TIGR02347 83 DDITGDG--------------------------------------------TTSTVILIGELLKQAERYILEGIHPRILT 118 (531)
T ss_pred hhhhcCc--------------------------------------------HHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccceEEEEc
Q psy16434 334 NGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRITKI 412 (745)
Q Consensus 334 ~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki 412 (745)
+||+.|++.++++|++++.+.. +..+.+.|.++|+|+++||+++. .++|++|+++|+..++++. ..+|+++|++.++
T Consensus 119 ~g~~~a~~~~~~~L~~~~~~~~-~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~-~~i~~~~I~i~k~ 196 (531)
T TIGR02347 119 EGFEIARGELLEFLDKFKIKTE-DEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDG-EQIDLFMVEIMEM 196 (531)
T ss_pred HHHHHHHHHHHHHHHHhhccCC-CCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcC-CCCChhHeEEEEe
Confidence 9999999999999999886521 23567889999999999999974 8999999999999998752 2488889999999
Q ss_pred cCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCcccccc--------------------------------
Q psy16434 413 LGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTET-------------------------------- 458 (745)
Q Consensus 413 ~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~-------------------------------- 458 (745)
.|++..||++++|++|++++.+ +|++++||+|++++++|++.+++.
T Consensus 197 ~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~ 276 (531)
T TIGR02347 197 KHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIE 276 (531)
T ss_pred cCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999976 489999999999999999775110
Q ss_pred -------------------C-----------------------------------------CCCCcccccccccEEEEEE
Q psy16434 459 -------------------K-----------------------------------------TPPAASELGYADSVAVDEL 478 (745)
Q Consensus 459 -------------------k-----------------------------------------~~p~a~~LG~a~~vq~~ei 478 (745)
+ +++++++||+|++++++++
T Consensus 277 ~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~i 356 (531)
T TIGR02347 277 LKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSI 356 (531)
T ss_pred hcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEE
Confidence 0 6778889999999999999
Q ss_pred CCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-------------------------------
Q psy16434 479 GDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------- 527 (745)
Q Consensus 479 Gdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------- 527 (745)
|++++++|.++.. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 357 g~~~~~~i~~~~~-~~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~ 435 (531)
T TIGR02347 357 GEEKYTFIEEVKN-PKSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAK 435 (531)
T ss_pred CCeEEEEEEcCCC-CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHH
Confidence 9999999999876 78999999999999999999999999999999887
Q ss_pred -----------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcc
Q psy16434 528 -----------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAA 596 (745)
Q Consensus 528 -----------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a 596 (745)
.+|++|++|||+|+.+++++|+..|.++..++|+|+.++ ++.||...||+||+.++..+++.|++.+
T Consensus 436 ~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g--~~~d~~~~gV~Dp~~vk~~al~~A~e~a 513 (531)
T TIGR02347 436 LGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETG--EPIDPEIKGIWDNYRVKKQLIQSATVIA 513 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCC--CccchhhccCEEcHHHHHHHHHHHHHHH
Confidence 679999999999999999999999987777799999999 9999999999999999999999999999
Q ss_pred hhhccccccee
Q psy16434 597 NTILQQTKAKI 607 (745)
Q Consensus 597 ~mil~IDn~kI 607 (745)
.|+++||++.+
T Consensus 514 ~~iLrID~ii~ 524 (531)
T TIGR02347 514 SQLLLVDEVMR 524 (531)
T ss_pred HHHHhHHHHHh
Confidence 99999999754
No 6
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=4.1e-66 Score=593.47 Aligned_cols=387 Identities=29% Similarity=0.433 Sum_probs=357.0
Q ss_pred CceeecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecC-----CCCeEEecCHHHHHhhccccChhhH
Q psy16434 170 LPAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINH-----IDKLFVTNDAATIIRELEIEHPAAK 244 (745)
Q Consensus 170 ~~~~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~-----~g~i~ITnDG~tIlk~l~~~hP~ak 244 (745)
-|..+++++.+..+| ++++..|+.||..|+++++|||||+||+|||+++ .|+++|||||+||||+|+++||+|+
T Consensus 6 ~~~~~~~~~~~~~~~-~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~ak 84 (533)
T PTZ00212 6 VPPQVLKQGAQEEKG-ETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAK 84 (533)
T ss_pred cchHHhcCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHH
Confidence 355567888888888 6899999999999999999999999999999998 6999999999999999999999999
Q ss_pred HHHHHHhhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhh
Q psy16434 245 LIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLR 324 (745)
Q Consensus 245 ll~~~s~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~ 324 (745)
|++++|++||+++||| |||+|+||++||+++.+|++
T Consensus 85 ll~~~a~~qd~~~GDG--------------------------------------------TTtvvvLa~~Ll~~a~~li~ 120 (533)
T PTZ00212 85 ILVDISKTQDEEVGDG--------------------------------------------TTSVVVLAGELLREAEKLLD 120 (533)
T ss_pred HHHHHHHhhhhhhCCc--------------------------------------------hhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcccccccccccC-cccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCC
Q psy16434 325 MGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDV-RNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSF 402 (745)
Q Consensus 325 ~gihP~~I~~g~~~a~~~~l~~L~~~s~~~~~~~-~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~ 402 (745)
+|+||+.|++||++|++.+++.|++++.+...+. .+++.|.++|+|+++||+.+. .+.|++++++|+..+.+ .+
T Consensus 121 ~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~----~~ 196 (533)
T PTZ00212 121 QKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKG----SG 196 (533)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhc----cC
Confidence 9999999999999999999999999987742211 125789999999999998875 69999999999999864 47
Q ss_pred CccceEEEEccCCCcccceeEeeEEEeecccC-CceeeeCceEEEeccCCCcccccc-------C---------------
Q psy16434 403 NVDNVRITKILGSGLFNSEIVQGMVFKRSVEG-DITKQTKAKIAVYTCPVDIATTET-------K--------------- 459 (745)
Q Consensus 403 dl~~I~I~ki~Ggs~~dS~lv~G~~l~~~~~~-~~~~i~nakIlil~~~Le~~k~e~-------k--------------- 459 (745)
++++|+++++.|++++||++++|+++++++.+ +|++++||||++++++||+.+++. .
T Consensus 197 ~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~~~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~ 276 (533)
T PTZ00212 197 NLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVGQPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEK 276 (533)
T ss_pred CccceEEEEecCcCccccEEEEeEEEecccCCCCCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHH
Confidence 88899999999999999999999999998764 699999999999999999988763 1
Q ss_pred -------------------------------------------------------------CCCCcccccccccEEEEEE
Q psy16434 460 -------------------------------------------------------------TPPAASELGYADSVAVDEL 478 (745)
Q Consensus 460 -------------------------------------------------------------~~p~a~~LG~a~~vq~~ei 478 (745)
+++++..||+|+.+++.++
T Consensus 277 i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~i 356 (533)
T PTZ00212 277 MKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMI 356 (533)
T ss_pred HHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEE
Confidence 6677788999999999999
Q ss_pred CCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-------------------------------
Q psy16434 479 GDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------- 527 (745)
Q Consensus 479 Gdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------- 527 (745)
|++++++|.|++. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 357 g~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~ 435 (533)
T PTZ00212 357 GEDKLIRFSGCAK-GEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKS 435 (533)
T ss_pred CCeEEEEEEccCC-CCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHH
Confidence 9999999999876 78999999999999999999999999999999887
Q ss_pred -----------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcc
Q psy16434 528 -----------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAA 596 (745)
Q Consensus 528 -----------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a 596 (745)
.+|++|++|||+|+.+++++|+..|.++..++|+|+.++ ++.||...|||||+.+|.++++.|++.+
T Consensus 436 ~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g--~i~d~~~~gI~dp~~vk~~al~~A~e~a 513 (533)
T PTZ00212 436 LAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKG--TVGDMKELGITESYKVKLSQLCSATEAA 513 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCC--cccchhhccceecHHHHHHHHHHHHHHH
Confidence 679999999999999999999999988877899999999 9999999999999999999999999999
Q ss_pred hhhcccccceee
Q psy16434 597 NTILQQTKAKIA 608 (745)
Q Consensus 597 ~mil~IDn~kIl 608 (745)
.|++++|++...
T Consensus 514 ~~iL~id~ii~~ 525 (533)
T PTZ00212 514 EMILRVDDIIRC 525 (533)
T ss_pred HHHHhhhHhhhc
Confidence 999999987764
No 7
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.1e-66 Score=591.56 Aligned_cols=392 Identities=54% Similarity=0.908 Sum_probs=358.4
Q ss_pred ecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhh
Q psy16434 174 IFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQ 253 (745)
Q Consensus 174 ~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~q 253 (745)
+++++....+|.++++..|+++|.+|+++|+|||||+||||||+++.|+++|||||+||+|+|+++||+++|++++|++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~sq 84 (531)
T TIGR02346 5 LLKEGYRHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQ 84 (531)
T ss_pred cccCCcccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHHH
Confidence 34555556677667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHH
Q psy16434 254 EEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIV 333 (745)
Q Consensus 254 d~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~ 333 (745)
|+++||| |||+|+||++||+++.+++++|+||..|+
T Consensus 85 d~~~GDG--------------------------------------------TTt~vvLa~~Ll~~~~~li~~gi~p~~Ii 120 (531)
T TIGR02346 85 ENEIGDG--------------------------------------------TNLVIVLAGELLDKAEELIRMGLHPSEII 120 (531)
T ss_pred hhhhCCC--------------------------------------------hhhHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEcc
Q psy16434 334 NGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKIL 413 (745)
Q Consensus 334 ~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~ 413 (745)
+||+.|++.+++.|++++.....+..+.+.|.++++|+++||+.++.++|++|+++|+.+++++..+.+|+++|+|+++.
T Consensus 121 ~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~ 200 (531)
T TIGR02346 121 KGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIM 200 (531)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEec
Confidence 99999999999999998863222334567899999999999999889999999999999998763347899999999999
Q ss_pred CCCcccceeEeeEEEeecccCCceeeeCceEEEeccCCCccccccC----------------------------------
Q psy16434 414 GSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK---------------------------------- 459 (745)
Q Consensus 414 Ggs~~dS~lv~G~~l~~~~~~~~~~i~nakIlil~~~Le~~k~e~k---------------------------------- 459 (745)
|+++++|++++|++|++++.++|+.++||||+++++|+++.+++.+
T Consensus 201 G~s~~ds~li~Gi~~~~~~~~~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~ 280 (531)
T TIGR02346 201 GGSISNSEVLKGMVFNREAEGSVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGV 280 (531)
T ss_pred CCChhhceeEeeeEEeccCCCCceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999998888999999999999999999887632
Q ss_pred ------------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccc
Q psy16434 460 ------------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAA 491 (745)
Q Consensus 460 ------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l 491 (745)
+++++.+||+|+++++.++|++++++|.+++.
T Consensus 281 ~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~ 360 (531)
T TIGR02346 281 NVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENG 360 (531)
T ss_pred cEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHHHCCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCC
Confidence 56777889999999999999999999999875
Q ss_pred ccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------------HH
Q psy16434 492 ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------------VF 529 (745)
Q Consensus 492 ~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------------~I 529 (745)
.++++||++||+|+.+++|.+|+++||+++++++++ .+
T Consensus 361 ~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~i 440 (531)
T TIGR02346 361 DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEII 440 (531)
T ss_pred CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999887 67
Q ss_pred HHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccceeee
Q psy16434 530 VKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIAV 609 (745)
Q Consensus 530 Pr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIll 609 (745)
|++|++|||+|+.+++++|+..|+++..++|+|+.++.+.+.||...||+||+.|+..+++.|++.+.|++++|+.....
T Consensus 441 p~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (531)
T TIGR02346 441 PRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAK 520 (531)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccC
Confidence 89999999999999999999999877778999999982226999999999999999999999999999999999987653
No 8
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.3e-66 Score=592.02 Aligned_cols=389 Identities=27% Similarity=0.410 Sum_probs=354.7
Q ss_pred ceeecccc--cccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHH
Q psy16434 171 PAAIFQYY--DKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIIL 248 (745)
Q Consensus 171 ~~~~~~~~--~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~ 248 (745)
|+.+++++ .+..+| ++++..|++||.+|+++++|||||+||||||+++.|+++|||||+||+|+|+++||+|+|+++
T Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~ 84 (526)
T cd03339 6 PFIIVREQEKKKRLKG-LEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVE 84 (526)
T ss_pred CeEEecCCCccccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHH
Confidence 44456665 245566 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCC
Q psy16434 249 GSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLT 328 (745)
Q Consensus 249 ~s~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gih 328 (745)
+|++||+++||| |||+++||++||+++.+|+++|+|
T Consensus 85 ~a~~q~~~~GDG--------------------------------------------Ttt~viLa~~ll~~~~~li~~gi~ 120 (526)
T cd03339 85 LSKSQDDEIGDG--------------------------------------------TTGVVVLAGALLEQAEKLLDRGIH 120 (526)
T ss_pred HHHhhhhhhcCC--------------------------------------------hhhHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccce
Q psy16434 329 PSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNV 407 (745)
Q Consensus 329 P~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I 407 (745)
|+.|++||+.|++.+++.|++++.+...+..+.+.|.++|+|++++|+.+. .+.|++++++|+..+.+.....+|++.|
T Consensus 121 p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I 200 (526)
T cd03339 121 PIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELI 200 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHe
Confidence 999999999999999999999988754444567789999999999998775 6999999999999886533346788999
Q ss_pred EEEEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC--------------------------
Q psy16434 408 RITKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK-------------------------- 459 (745)
Q Consensus 408 ~I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k-------------------------- 459 (745)
+|.++.||+++||++++|++|++++.+ +|+.++||||++++++||+++.+.+
T Consensus 201 ~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v 280 (526)
T cd03339 201 KVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMV 280 (526)
T ss_pred EEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986 4999999999999999999876532
Q ss_pred --------------------------------------------------------CCCCcccccccccEEEEEECC--e
Q psy16434 460 --------------------------------------------------------TPPAASELGYADSVAVDELGD--T 481 (745)
Q Consensus 460 --------------------------------------------------------~~p~a~~LG~a~~vq~~eiGd--t 481 (745)
+++++..||+|+.++++++|+ +
T Consensus 281 ~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~ 360 (526)
T cd03339 281 EQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKD 360 (526)
T ss_pred HHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHHHHhCCEEecchhhCChhhcccCceEEEEEecCCCc
Confidence 677888899999999999996 6
Q ss_pred eEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------------------------
Q psy16434 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------------------------- 527 (745)
Q Consensus 482 svti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------------------------- 527 (745)
++++|.|+.. ++++||++||+|+.+++|++|+++||+++++++++
T Consensus 361 ~~~~i~g~~~-~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~ 439 (526)
T cd03339 361 KMLVIEGCPN-SKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAM 439 (526)
T ss_pred EEEEEECCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 8899999876 78999999999999999999999999999999887
Q ss_pred --------HHHHHHHhhccchhhHHHHHHHHHhhcC-CccceeeecCCCcceeecccccccccccchhhHhhhhhhcchh
Q psy16434 528 --------VFVKTLAENTGVKSNEVISKLYSAHNEG-KKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANT 598 (745)
Q Consensus 528 --------~IPr~LaeNAGld~~~vlsKL~~~h~~g-~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~m 598 (745)
.+|++|++|||+|+.+++++|+..|.++ ..++|+|+.++ ++.||...||+||+.+|..+++.|++.+.|
T Consensus 440 ~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g--~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~ 517 (526)
T cd03339 440 RAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGR--GTNDMKEQKVFETLISKKQQILLATQVVKM 517 (526)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCC--ccCchhhcCceecHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999988643 55799999999 999999999999999999999999999999
Q ss_pred hccccccee
Q psy16434 599 ILQQTKAKI 607 (745)
Q Consensus 599 il~IDn~kI 607 (745)
+++||++.+
T Consensus 518 iL~iD~ii~ 526 (526)
T cd03339 518 ILKIDDVIV 526 (526)
T ss_pred HhhhceecC
Confidence 999998753
No 9
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.7e-66 Score=589.42 Aligned_cols=381 Identities=28% Similarity=0.418 Sum_probs=351.5
Q ss_pred ccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecC--CCCeEEecCHHHHHhhccccChhhHHHHHHHhhh
Q psy16434 176 QYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINH--IDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQ 253 (745)
Q Consensus 176 ~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~--~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~q 253 (745)
+++.+..+| ++++..|+.||..|+++++|||||+||+|||+++ .|+++|||||+||+|+|+++||+++|++++|++|
T Consensus 3 ~~~~~~~~~-~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 81 (517)
T cd03336 3 KDGAQEEKG-ETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQ 81 (517)
T ss_pred CCccccccH-HHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHH
Confidence 445556667 5899999999999999999999999999999998 5999999999999999999999999999999999
Q ss_pred hchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHH
Q psy16434 254 EEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIV 333 (745)
Q Consensus 254 d~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~ 333 (745)
|+++||| |||+|+||++||+++.+|+++|+||+.|+
T Consensus 82 d~~~GDG--------------------------------------------TTtvvvLa~~Ll~~a~~li~~gi~p~~I~ 117 (517)
T cd03336 82 DDEVGDG--------------------------------------------TTSVTVLAAELLREAEKLVAQKIHPQTII 117 (517)
T ss_pred HhHhCCC--------------------------------------------hhHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccC-cccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccceEEEE
Q psy16434 334 NGYKLALAKTLEILPTLTCFEVKDV-RNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRITK 411 (745)
Q Consensus 334 ~g~~~a~~~~l~~L~~~s~~~~~~~-~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~k 411 (745)
+||+.|++.++++|++++++...+. .+++.|.++|+|+++||+.++ .++|++|+++|+.++.+ .+|+++|+|++
T Consensus 118 ~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~----~~~~~~i~i~k 193 (517)
T cd03336 118 EGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKG----SGNLDAIQIIK 193 (517)
T ss_pred HHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhc----cCCccceeEEE
Confidence 9999999999999999988742211 235789999999999999985 79999999999999963 47888999999
Q ss_pred ccCCCcccceeEeeEEEeecccC-CceeeeCceEEEeccCCCcccccc--------C-----------------------
Q psy16434 412 ILGSGLFNSEIVQGMVFKRSVEG-DITKQTKAKIAVYTCPVDIATTET--------K----------------------- 459 (745)
Q Consensus 412 i~Ggs~~dS~lv~G~~l~~~~~~-~~~~i~nakIlil~~~Le~~k~e~--------k----------------------- 459 (745)
+.|++++||++++|+++++.+.+ +|++++||+|++++++||+++++. .
T Consensus 194 i~G~s~~ds~l~~G~v~~~~~~~~~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~ 273 (517)
T cd03336 194 KLGGSLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKIL 273 (517)
T ss_pred ccCCCccceEEEeeEEEecccCCCCCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998754 599999999999999999887753 1
Q ss_pred ----------------------------------------------------CCCCcccccccccEEEEEECCeeEEEEE
Q psy16434 460 ----------------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFK 487 (745)
Q Consensus 460 ----------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~ 487 (745)
+.+++..||+|+.+++..+|++++++|.
T Consensus 274 ~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~ 353 (517)
T cd03336 274 KHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFS 353 (517)
T ss_pred hcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecccCCCCcccccccceEEEEEECCeEEEEEE
Confidence 6678888999999999999999999999
Q ss_pred ecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------------------------------
Q psy16434 488 LEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------------------------------- 527 (745)
Q Consensus 488 g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------------------------------- 527 (745)
+++. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 354 ~~~~-~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~A 432 (517)
T cd03336 354 GVAA-GEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKA 432 (517)
T ss_pred ccCC-CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHH
Confidence 9986 78999999999999999999999999999999887
Q ss_pred --HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccc
Q psy16434 528 --VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKA 605 (745)
Q Consensus 528 --~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~ 605 (745)
.+|++|++|||+|+.+++++|+..|.++..++|+|+.++ ++.||...||+||+.++.++++.|++.+.|++++|++
T Consensus 433 Le~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g--~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~i 510 (517)
T cd03336 433 LRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKG--TVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDI 510 (517)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCC--CccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHH
Confidence 679999999999999999999999988888899999999 9999999999999999999999999999999999987
Q ss_pred eee
Q psy16434 606 KIA 608 (745)
Q Consensus 606 kIl 608 (745)
.+.
T Consensus 511 i~~ 513 (517)
T cd03336 511 IKC 513 (517)
T ss_pred hhc
Confidence 653
No 10
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.2e-66 Score=592.11 Aligned_cols=385 Identities=28% Similarity=0.454 Sum_probs=352.2
Q ss_pred ecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhh
Q psy16434 174 IFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQ 253 (745)
Q Consensus 174 ~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~q 253 (745)
+++++.+..+| ++++..|++||.+|+++++|||||+||||||+++.|+++|||||+||||+|+++||+++|++++|++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q 82 (525)
T TIGR02344 4 VLNQNTKRESG-RKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQ 82 (525)
T ss_pred eccCCCccccH-HHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhh
Confidence 45666666777 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHH
Q psy16434 254 EEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIV 333 (745)
Q Consensus 254 d~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~ 333 (745)
|+++||| |||+|+||++||+++.+|+++|+||+.|+
T Consensus 83 ~~~~GDG--------------------------------------------Ttt~viLa~~Ll~~a~~li~~gi~p~~I~ 118 (525)
T TIGR02344 83 DEEVGDG--------------------------------------------TTSVIILAGEMLSVAEPFLEQNIHPTIII 118 (525)
T ss_pred hhhccCC--------------------------------------------cchhHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCCC-CC--CCCcc-ceE
Q psy16434 334 NGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPDG-SS--SFNVD-NVR 408 (745)
Q Consensus 334 ~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~~-~~--~~dl~-~I~ 408 (745)
+||+.|++.++++|++++.+. +..+.+.|.++|+|+++||+.+ +.+.|++|+++|+..++++. .+ .+|++ +|+
T Consensus 119 ~g~~~a~~~~~~~L~~~~~~~--~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~ 196 (525)
T TIGR02344 119 RAYKKALDDALSVLEEISIPV--DVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAK 196 (525)
T ss_pred HHHHHHHHHHHHHHHHhcccc--CCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceE
Confidence 999999999999999988763 3445677999999999999987 47999999999999998753 22 45664 489
Q ss_pred EEEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC---------------------------
Q psy16434 409 ITKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK--------------------------- 459 (745)
Q Consensus 409 I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k--------------------------- 459 (745)
|++++||+++||++++|++|++++.+ ||++++||+|++++++|++.+++.+
T Consensus 197 i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~ 276 (525)
T TIGR02344 197 VEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCE 276 (525)
T ss_pred EEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999865 5999999999999999999865421
Q ss_pred -------------------------------------------------------CCCCcccccc-cccEEEEEECCeeE
Q psy16434 460 -------------------------------------------------------TPPAASELGY-ADSVAVDELGDTAV 483 (745)
Q Consensus 460 -------------------------------------------------------~~p~a~~LG~-a~~vq~~eiGdtsv 483 (745)
++++++.||+ |+.++++++|++++
T Consensus 277 ~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~ 356 (525)
T TIGR02344 277 DIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYF 356 (525)
T ss_pred HHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEE
Confidence 6678888999 99999999999999
Q ss_pred EEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------
Q psy16434 484 VVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------ 527 (745)
Q Consensus 484 ti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------ 527 (745)
++|.|+.. +.++||++||+|+.+++|++|+++||+++++++++
T Consensus 357 ~~~~g~~~-~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~ 435 (525)
T TIGR02344 357 TFFTECKD-PKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRA 435 (525)
T ss_pred EEEEcCCC-CCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 99999876 78999999999999999999999999999999886
Q ss_pred ------HHHHHHHhhccchhhHHHHHHHHHhhcC-CccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhc
Q psy16434 528 ------VFVKTLAENTGVKSNEVISKLYSAHNEG-KKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600 (745)
Q Consensus 528 ------~IPr~LaeNAGld~~~vlsKL~~~h~~g-~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil 600 (745)
.+|++|++|||+|+.+++++|+..|.++ ..++|+|+.++ ++.||...||+||+.++..+++.|++.+.|++
T Consensus 436 ~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g--~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL 513 (525)
T TIGR02344 436 VADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETG--KIVDMKEKGIWEPLAVKLQTYKTAIESACMLL 513 (525)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCC--ccccchhccceecHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999876 56799999999 99999999999999999999999999999999
Q ss_pred ccccceee
Q psy16434 601 QQTKAKIA 608 (745)
Q Consensus 601 ~IDn~kIl 608 (745)
++|++...
T Consensus 514 ~id~ii~~ 521 (525)
T TIGR02344 514 RIDDIVSG 521 (525)
T ss_pred hhhHHhhc
Confidence 99987643
No 11
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.7e-66 Score=590.29 Aligned_cols=384 Identities=28% Similarity=0.470 Sum_probs=353.8
Q ss_pred eecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhh
Q psy16434 173 AIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQM 252 (745)
Q Consensus 173 ~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~ 252 (745)
.+++++.+..+|. +++.+|+.+|.+|+++++|||||+||+|||+++.|+++|||||+||||+|+++||+++|++++|++
T Consensus 3 ~~~~~~~~~~~~~-~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~ 81 (522)
T cd03340 3 ILLKEGTDTSQGK-GQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKS 81 (522)
T ss_pred ccccCCcccccHH-HHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHH
Confidence 3567777777884 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHH
Q psy16434 253 QEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEI 332 (745)
Q Consensus 253 qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I 332 (745)
||+++||| |||+|+||++||+++.+|+++|+||+.|
T Consensus 82 q~~~~GDG--------------------------------------------Ttt~viL~~~ll~~~~~li~~gi~p~~I 117 (522)
T cd03340 82 QDAEVGDG--------------------------------------------TTSVVVLAGEFLKEAKPFIEDGVHPQII 117 (522)
T ss_pred hHhHhCCC--------------------------------------------hhHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccccccC--cccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccceEE
Q psy16434 333 VNGYKLALAKTLEILPTLTCFEVKDV--RNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRI 409 (745)
Q Consensus 333 ~~g~~~a~~~~l~~L~~~s~~~~~~~--~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I~I 409 (745)
++||+.|++.+++.|++++++...+. .+++.|.++|+|+++||+.+. .++|++|+++|+.++++ .+|+++|+|
T Consensus 118 i~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~----~~~~~~I~i 193 (522)
T cd03340 118 IRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDD----DLDLDMIGI 193 (522)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcc----cCChhHheE
Confidence 99999999999999999887642211 135679999999999999975 79999999999999975 367889999
Q ss_pred EEccCCCcccceeEeeEEEeecccC-----CceeeeCceEEEeccCCCccccccC-------------------------
Q psy16434 410 TKILGSGLFNSEIVQGMVFKRSVEG-----DITKQTKAKIAVYTCPVDIATTETK------------------------- 459 (745)
Q Consensus 410 ~ki~Ggs~~dS~lv~G~~l~~~~~~-----~~~~i~nakIlil~~~Le~~k~e~k------------------------- 459 (745)
+++.|+++.||++++|++|++++.+ +|++++||+|++++++||+.+++.+
T Consensus 194 ~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~ 273 (522)
T cd03340 194 KKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDK 273 (522)
T ss_pred eeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999764 4899999999999999998775321
Q ss_pred ---------------------------------------------------------CCCCcccccccccEEEEEECCee
Q psy16434 460 ---------------------------------------------------------TPPAASELGYADSVAVDELGDTA 482 (745)
Q Consensus 460 ---------------------------------------------------------~~p~a~~LG~a~~vq~~eiGdts 482 (745)
+++++..||+|+++++.++|+++
T Consensus 274 v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~ 353 (522)
T cd03340 274 LEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGER 353 (522)
T ss_pred HHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEeeccccCCccccccceEEEEEEECCEE
Confidence 66788899999999999999999
Q ss_pred EEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-----------------------------------
Q psy16434 483 VVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK----------------------------------- 527 (745)
Q Consensus 483 vti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~----------------------------------- 527 (745)
+++|.|+.. ++++||++||+++.+++|.+|+++||+++++++++
T Consensus 354 ~~~~~~~~~-~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~ 432 (522)
T cd03340 354 YNIFTGCPK-AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVIN 432 (522)
T ss_pred EEEEECCCC-CceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 999999976 78999999999999999999999999999999887
Q ss_pred -------HHHHHHHhhccchhhHHHHHHHHHhhcCC-ccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhh
Q psy16434 528 -------VFVKTLAENTGVKSNEVISKLYSAHNEGK-KTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTI 599 (745)
Q Consensus 528 -------~IPr~LaeNAGld~~~vlsKL~~~h~~g~-~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mi 599 (745)
.+|++|++|||+|+.+++++|++.|.++. .++|+|+.++ ++.||...||+||+.||..+++.|++.++|+
T Consensus 433 ~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g--~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~i 510 (522)
T cd03340 433 AFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNE--GIADNFEAFVWEPSLVKINALTAATEAACLI 510 (522)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCC--cccchhhcCceEcHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999998876 6799999999 9999999999999999999999999999999
Q ss_pred cccccceee
Q psy16434 600 LQQTKAKIA 608 (745)
Q Consensus 600 l~IDn~kIl 608 (745)
+++|++.++
T Consensus 511 L~id~ii~~ 519 (522)
T cd03340 511 LSVDETIKN 519 (522)
T ss_pred hhhhhheeC
Confidence 999997754
No 12
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.1e-66 Score=590.87 Aligned_cols=384 Identities=29% Similarity=0.444 Sum_probs=353.9
Q ss_pred eecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhh
Q psy16434 173 AIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQM 252 (745)
Q Consensus 173 ~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~ 252 (745)
.+++++.+..+| .+++..|+++|.+|+++++|||||+||+|||+++.| ++|||||+||||+|+++||+++|++++|++
T Consensus 5 ~~~~~~~~~~~~-~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~~ 82 (522)
T TIGR02345 5 VLLKEGTDTSQG-KGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAKS 82 (522)
T ss_pred chhcCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHHH
Confidence 456788777888 489999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHH
Q psy16434 253 QEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEI 332 (745)
Q Consensus 253 qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I 332 (745)
||+++||| |||+|+||++||+++.+|+++|+||+.|
T Consensus 83 q~~~~GDG--------------------------------------------TTt~vvLa~~Ll~~~~~li~~gi~p~~I 118 (522)
T TIGR02345 83 QDSEVGDG--------------------------------------------TTSVVILAGELLKEAKPFIEEGVHPQLI 118 (522)
T ss_pred HHHHhCCC--------------------------------------------chhHHHHHHHHHHhHHHHHHcCCCHHHH
Confidence 99999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccccc-CcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccceEEE
Q psy16434 333 VNGYKLALAKTLEILPTLTCFEVKD-VRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRIT 410 (745)
Q Consensus 333 ~~g~~~a~~~~l~~L~~~s~~~~~~-~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ 410 (745)
++||+.|++.+++.|++++++.... ..+.+.|.++|+|+++||+.+. .++|++|+++|+.+++++ .+|++.|+|+
T Consensus 119 i~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~---~~~~~~I~i~ 195 (522)
T TIGR02345 119 IRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDID---DLDLKLIGVK 195 (522)
T ss_pred HHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhc---cCChhHheEE
Confidence 9999999999999999988774321 1245679999999999999975 799999999999999753 5888999999
Q ss_pred EccCCCcccceeEeeEEEeecccC-----CceeeeCceEEEeccCCCccccccC--------------------------
Q psy16434 411 KILGSGLFNSEIVQGMVFKRSVEG-----DITKQTKAKIAVYTCPVDIATTETK-------------------------- 459 (745)
Q Consensus 411 ki~Ggs~~dS~lv~G~~l~~~~~~-----~~~~i~nakIlil~~~Le~~k~e~k-------------------------- 459 (745)
++.|++++||++++|++|++++.+ +|++++||+|++++++|++.+.+.+
T Consensus 196 ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i 275 (522)
T TIGR02345 196 KVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKL 275 (522)
T ss_pred eecCCCHHhcceecceEEecccCccccccCCceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999764 4899999999999999998865421
Q ss_pred --------------------------------------------------------CCCCcccccccccEEEEEECCeeE
Q psy16434 460 --------------------------------------------------------TPPAASELGYADSVAVDELGDTAV 483 (745)
Q Consensus 460 --------------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsv 483 (745)
+++++.+||+|+.++++++|++++
T Consensus 276 ~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~ 355 (522)
T TIGR02345 276 EKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRVVKACGGSIQSTTSDLEADVLGTCALFEERQIGSERY 355 (522)
T ss_pred HHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCeEEcchhhCChhhccCCceEEEEEECCeEE
Confidence 567778899999999999999999
Q ss_pred EEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------
Q psy16434 484 VVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------ 527 (745)
Q Consensus 484 ti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------ 527 (745)
++|.|++. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 356 ~~~~g~~~-~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~ 434 (522)
T TIGR02345 356 NYFTGCPH-AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEA 434 (522)
T ss_pred EEEEcCCC-CceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 99999876 78999999999999999999999999999999886
Q ss_pred ------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcc
Q psy16434 528 ------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601 (745)
Q Consensus 528 ------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~ 601 (745)
.+|++|++|||+|+.+++++|++.|..+..++|+|+.++ ++.||...||+||+.++..+++.|++.+.|+++
T Consensus 435 ~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~--~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ 512 (522)
T TIGR02345 435 FAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTE--DIGDNFENFVWEPLLVKKNALKAAFEAACTILS 512 (522)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCC--cccchhhcCceEcHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999987777899999999 999999999999999999999999999999999
Q ss_pred cccceee
Q psy16434 602 QTKAKIA 608 (745)
Q Consensus 602 IDn~kIl 608 (745)
+|++.+.
T Consensus 513 id~ii~~ 519 (522)
T TIGR02345 513 IDETIMN 519 (522)
T ss_pred HHHHHhC
Confidence 9987653
No 13
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.8e-66 Score=590.40 Aligned_cols=386 Identities=27% Similarity=0.432 Sum_probs=354.3
Q ss_pred eeccc--ccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHH
Q psy16434 173 AIFQY--YDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGS 250 (745)
Q Consensus 173 ~~~~~--~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s 250 (745)
.++++ +.+..+| .+++..|++||..|+++++|||||+||||||+++.|+++|||||+||+|+|+++||+++|++++|
T Consensus 12 ~~~~~~~~~~~~~~-~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~a 90 (532)
T TIGR02343 12 IIIKDQDKKKRLKG-LEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVELS 90 (532)
T ss_pred hhhccccccccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHHH
Confidence 34555 4556777 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHH
Q psy16434 251 QMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPS 330 (745)
Q Consensus 251 ~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~ 330 (745)
++||+++||| |||+++||++||+++.+|+++|+||+
T Consensus 91 ~~qd~~~GDG--------------------------------------------TttvvvLa~~Ll~~a~~li~~gihp~ 126 (532)
T TIGR02343 91 KSQDDEIGDG--------------------------------------------TTGVVVLAGALLEQAEALLDKGIHPI 126 (532)
T ss_pred HHHHHHhcCC--------------------------------------------cccHHHHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccceEE
Q psy16434 331 EIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRI 409 (745)
Q Consensus 331 ~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I~I 409 (745)
.|++||+.|++.++++|++++++...+..+++.|.++|+|++++|+.+. .+.|++++++|+..+.+...+.+|+++|+|
T Consensus 127 ~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i 206 (532)
T TIGR02343 127 KIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKV 206 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeE
Confidence 9999999999999999999988754344467789999999999997775 799999999999998653335689999999
Q ss_pred EEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC----------------------------
Q psy16434 410 TKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK---------------------------- 459 (745)
Q Consensus 410 ~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k---------------------------- 459 (745)
+++.||+++||++++|++|++++.+ +|+.++||||++++++||+++++.+
T Consensus 207 ~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~ 286 (532)
T TIGR02343 207 EGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDD 286 (532)
T ss_pred EEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999985 5999999999999999999887642
Q ss_pred ------------------------------------------------------CCCCcccccccccEEEEEECC--eeE
Q psy16434 460 ------------------------------------------------------TPPAASELGYADSVAVDELGD--TAV 483 (745)
Q Consensus 460 ------------------------------------------------------~~p~a~~LG~a~~vq~~eiGd--tsv 483 (745)
+++++..||+|++++++++|+ +++
T Consensus 287 i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~ 366 (532)
T TIGR02343 287 IKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRM 366 (532)
T ss_pred HHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCCcceE
Confidence 677888999999999999998 489
Q ss_pred EEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------
Q psy16434 484 VVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------ 527 (745)
Q Consensus 484 ti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------ 527 (745)
++|.++.. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 367 ~~i~~~~~-~~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~ 445 (532)
T TIGR02343 367 LVIEQCKN-SKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRA 445 (532)
T ss_pred EEEECCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 99999876 78999999999999999999999999999999887
Q ss_pred ------HHHHHHHhhccchhhHHHHHHHHHhhcC-CccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhc
Q psy16434 528 ------VFVKTLAENTGVKSNEVISKLYSAHNEG-KKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600 (745)
Q Consensus 528 ------~IPr~LaeNAGld~~~vlsKL~~~h~~g-~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil 600 (745)
.+|++|++|||+|+.++++++++.|..+ ..++|+|+.++ ++.||...+|+||+.+|..+++.|++.+.|++
T Consensus 446 fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g--~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL 523 (532)
T TIGR02343 446 FADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGD--GTNDMKEQGVFETLIGKKQQIQLATQLVRMIL 523 (532)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCC--ccccchhccCeecHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999988754 55799999999 99999999999999999999999999999999
Q ss_pred ccccce
Q psy16434 601 QQTKAK 606 (745)
Q Consensus 601 ~IDn~k 606 (745)
++|++.
T Consensus 524 ~id~ii 529 (532)
T TIGR02343 524 KIDDVI 529 (532)
T ss_pred hHhhhc
Confidence 999865
No 14
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-65 Score=587.58 Aligned_cols=375 Identities=27% Similarity=0.452 Sum_probs=349.6
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCccchhh
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVI 265 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDGt~~~~ 265 (745)
.+++.+|++||..|+++++|||||+||||||+++.|+++|||||+||||+|+++||+++|++++|++||+++|||
T Consensus 8 ~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG----- 82 (517)
T TIGR02342 8 TDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDG----- 82 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCC-----
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q psy16434 266 IFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLE 345 (745)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~~~l~ 345 (745)
|||+++||++||++|.+|+++|+||+.|++||+.|++.+++
T Consensus 83 ---------------------------------------Ttt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~ 123 (517)
T TIGR02342 83 ---------------------------------------TTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIK 123 (517)
T ss_pred ---------------------------------------cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999
Q ss_pred hcccccccccccCcccccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCC-CCCCCCccceEEEEccCCCcccceeE
Q psy16434 346 ILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPD-GSSSFNVDNVRITKILGSGLFNSEIV 423 (745)
Q Consensus 346 ~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~-~~~~~dl~~I~I~ki~Ggs~~dS~lv 423 (745)
+|++++++. +..+++.|.++|+|++++|+.+ +.++|++|+++|+.+++++ .++.+|+++|+|.++.|+++++|+++
T Consensus 124 ~L~~~~~~~--~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li 201 (517)
T TIGR02342 124 ILDEMSIPV--DLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELI 201 (517)
T ss_pred HHHHhcccc--CccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEE
Confidence 999998773 3346778999999999999886 4799999999999999863 23578999999999999999999999
Q ss_pred eeEEEeecccC---CceeeeCceEEEeccCCCccccccC-----------------------------------------
Q psy16434 424 QGMVFKRSVEG---DITKQTKAKIAVYTCPVDIATTETK----------------------------------------- 459 (745)
Q Consensus 424 ~G~~l~~~~~~---~~~~i~nakIlil~~~Le~~k~e~k----------------------------------------- 459 (745)
+|++|++++.+ +|++++|+||++++++|+..+++.+
T Consensus 202 ~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~ 281 (517)
T TIGR02342 202 EGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQK 281 (517)
T ss_pred eeEEEeccccccCCCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECC
Confidence 99999999876 4999999999999999998876532
Q ss_pred ----------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccccc
Q psy16434 460 ----------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAAES 493 (745)
Q Consensus 460 ----------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~ 493 (745)
+++++.+||+|+.+++.++|+++++++.+++.++
T Consensus 282 ~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~ 361 (517)
T TIGR02342 282 SILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAG 361 (517)
T ss_pred CcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCC
Confidence 6678889999999999999999999999887645
Q ss_pred ceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------------HHHH
Q psy16434 494 RIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------------VFVK 531 (745)
Q Consensus 494 ~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------------~IPr 531 (745)
+.+||++||+|+.+++|.+|+++||+++++++++ .+|+
T Consensus 362 ~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~ 441 (517)
T TIGR02342 362 KTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPY 441 (517)
T ss_pred ceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999886 6799
Q ss_pred HHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccceee
Q psy16434 532 TLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIA 608 (745)
Q Consensus 532 ~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIl 608 (745)
+|++|||+|+.+++++|+..|.++..++|+|+.++ ++.||...||+||+.++..+++.|++.+.|+++||++.+.
T Consensus 442 ~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g--~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~ 516 (517)
T TIGR02342 442 TLAENAGLNPIDVVTELRNRHANGEKYAGISVRKG--GITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFT 516 (517)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCC--CccchhhccceEcHHHHHHHHHHHHHHHHHHhcccceeec
Confidence 99999999999999999999988878899999999 9999999999999999999999999999999999997653
No 15
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.5e-65 Score=588.46 Aligned_cols=377 Identities=30% Similarity=0.479 Sum_probs=344.9
Q ss_pred cccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCc
Q psy16434 181 HFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDG 260 (745)
Q Consensus 181 ~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDG 260 (745)
..+| ++++..|++||.+|+++++|||||+||+|||+++.|+++|||||+||+|+|+++||+|+|++++|++||+++|||
T Consensus 3 ~~~~-~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDG 81 (527)
T cd03335 3 RTSG-QDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDG 81 (527)
T ss_pred cccH-HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCC
Confidence 3455 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Q psy16434 261 TNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLAL 340 (745)
Q Consensus 261 t~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~ 340 (745)
|||+|+||++||+++.+|+++|+||+.|++||+.|+
T Consensus 82 --------------------------------------------TTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~ 117 (527)
T cd03335 82 --------------------------------------------TTSVVIIAAELLKRANELVKQKIHPTTIISGYRLAC 117 (527)
T ss_pred --------------------------------------------cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999
Q ss_pred HHHHHhccc-ccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcC-CCCC--CCCccceEEEEccCC
Q psy16434 341 AKTLEILPT-LTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILP-DGSS--SFNVDNVRITKILGS 415 (745)
Q Consensus 341 ~~~l~~L~~-~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~-~~~~--~~dl~~I~I~ki~Gg 415 (745)
+.+++.|++ ++++. +..+++.|.++|+|+++||+++. .++|++|+++|+..++. +..+ .+|+++|+|+++.|+
T Consensus 118 ~~~~~~L~~~~~~~~--~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Gg 195 (527)
T cd03335 118 KEAVKYIKEHLSISV--DNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGK 195 (527)
T ss_pred HHHHHHHHHhhccCC--CccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCc
Confidence 999999996 77763 33367789999999999999976 59999999999999953 2112 488999999999999
Q ss_pred CcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC----------------------------------
Q psy16434 416 GLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK---------------------------------- 459 (745)
Q Consensus 416 s~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k---------------------------------- 459 (745)
++.+|++++|++|++++.+ +|++++||+|++++++|++.+++.+
T Consensus 196 s~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~ 275 (527)
T cd03335 196 SAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGA 275 (527)
T ss_pred ChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999876 5899999999999999998765431
Q ss_pred ------------------------------------------------CC------CCcccccccccEEEEEECCeeEEE
Q psy16434 460 ------------------------------------------------TP------PAASELGYADSVAVDELGDTAVVV 485 (745)
Q Consensus 460 ------------------------------------------------~~------p~a~~LG~a~~vq~~eiGdtsvti 485 (745)
+. +++.+||+|++++++++|++++++
T Consensus 276 ~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~ 355 (527)
T cd03335 276 NVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELIL 355 (527)
T ss_pred CEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEE
Confidence 22 234579999999999999999999
Q ss_pred EEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH--------------------------------------
Q psy16434 486 FKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK-------------------------------------- 527 (745)
Q Consensus 486 ~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~-------------------------------------- 527 (745)
|.|+.. ++++||++||+|+.+++|++|+++||+++++++++
T Consensus 356 i~g~~~-~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a 434 (527)
T cd03335 356 IKGTKK-RSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFA 434 (527)
T ss_pred EEcCCC-CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 999886 89999999999999999999999999999999887
Q ss_pred ----HHHHHHHhhccchhhHHHHHHHHHhhcC--------CccceeeecCCCcceeecccccccccccchhhHhhhhhhc
Q psy16434 528 ----VFVKTLAENTGVKSNEVISKLYSAHNEG--------KKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSA 595 (745)
Q Consensus 528 ----~IPr~LaeNAGld~~~vlsKL~~~h~~g--------~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~ 595 (745)
.+|++|++|||+|+.+++++|++.|..+ ..++|+|+.++ ++.||...||+||+.+|..+++.|+++
T Consensus 435 ~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g--~~~d~~~~gV~dp~~~k~~~i~~A~e~ 512 (527)
T cd03335 435 EALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLING--KVRDNLEAGVLEPTVSKIKSLKFATEA 512 (527)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCC--cccchhhccceecHHHHHHHHHHHHHH
Confidence 6799999999999999999999998876 34689999999 999999999999999999999999999
Q ss_pred chhhccccccee
Q psy16434 596 ANTILQQTKAKI 607 (745)
Q Consensus 596 a~mil~IDn~kI 607 (745)
+.|+++||++.+
T Consensus 513 a~~iLrID~ii~ 524 (527)
T cd03335 513 AITILRIDDLIK 524 (527)
T ss_pred HHHHHhhcceee
Confidence 999999999764
No 16
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.8e-65 Score=581.53 Aligned_cols=383 Identities=29% Similarity=0.479 Sum_probs=348.9
Q ss_pred ecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhh
Q psy16434 174 IFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQ 253 (745)
Q Consensus 174 ~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~q 253 (745)
+++++.+..+| ++++..|+.||.+|+++++|||||+||+|||+++.|+++|||||+||||+|+++||+++|++++|++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 82 (480)
T cd03337 4 VLNQNTKRESG-RKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQ 82 (480)
T ss_pred eccCCCccccH-HHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhH
Confidence 45666666677 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHH
Q psy16434 254 EEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIV 333 (745)
Q Consensus 254 d~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~ 333 (745)
|+++||| |||+++|+++||+++.+|+++|+||+.|+
T Consensus 83 ~~~~GDG--------------------------------------------Ttt~vvL~~~Ll~~a~~li~~gi~p~~I~ 118 (480)
T cd03337 83 DEEVGDG--------------------------------------------TTSVIILAGEILAVAEPFLERGIHPTVII 118 (480)
T ss_pred HHHhCCC--------------------------------------------cchhHhhHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCC---CCCcc-ceE
Q psy16434 334 NGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSS---SFNVD-NVR 408 (745)
Q Consensus 334 ~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~---~~dl~-~I~ 408 (745)
+||+.|++.++++|++++.+ .+..+.+.|.++++|+++||+.+. .+.|++|+++|+..++++..+ .+|++ +|+
T Consensus 119 ~g~~~a~~~~~~~L~~~~~~--~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~ 196 (480)
T cd03337 119 KAYRKALEDALKILEEISIP--VDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAK 196 (480)
T ss_pred HHHHHHHHHHHHHHHHhccc--cccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceE
Confidence 99999999999999998876 334577889999999999999974 799999999999999875322 36665 599
Q ss_pred EEEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC---------------------------
Q psy16434 409 ITKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK--------------------------- 459 (745)
Q Consensus 409 I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k--------------------------- 459 (745)
|++++|++++||++++|++|++++.+ ||++++||+|++++++||+.-.-.+
T Consensus 197 i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~ 276 (480)
T cd03337 197 VEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEYLVITEKGVSDLAQHYLVKAGITALRRVRKTDNN 276 (480)
T ss_pred EEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEecCcceEEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHH
Confidence 99999999999999999999999976 5999999999999999986221111
Q ss_pred --------------CCCCcccccc-cccEEEEEECCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHH
Q psy16434 460 --------------TPPAASELGY-ADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKG 524 (745)
Q Consensus 460 --------------~~p~a~~LG~-a~~vq~~eiGdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~ 524 (745)
+++++..||+ |+.++++++|++++++|.++.. .+++||++||+|+.+++|++|+++||++++++
T Consensus 277 rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~-~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~ 355 (480)
T cd03337 277 RIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKD-PKACTILLRGASKDVLNEVERNLQDAMAVARN 355 (480)
T ss_pred HHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 6678888999 6777888889999999999876 78999999999999999999999999999999
Q ss_pred HHH------------------------------------------HHHHHHHhhccchhhHHHHHHHHHhhcC-Ccccee
Q psy16434 525 ITK------------------------------------------VFVKTLAENTGVKSNEVISKLYSAHNEG-KKTYGF 561 (745)
Q Consensus 525 ~~~------------------------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g-~~~~GI 561 (745)
+++ .+|++|++|||+|+.+++++|++.|.++ ..++|+
T Consensus 356 ~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gi 435 (480)
T cd03337 356 IILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGI 435 (480)
T ss_pred HhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECe
Confidence 886 6799999999999999999999999887 567999
Q ss_pred eecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccce
Q psy16434 562 DINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAK 606 (745)
Q Consensus 562 Dl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~k 606 (745)
|+.++ ++.||...+|+||+.+|..+++.|++.+.+++++|++.
T Consensus 436 d~~~g--~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii 478 (480)
T cd03337 436 DGETG--DIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIV 478 (480)
T ss_pred eccCC--CcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhhee
Confidence 99999 99999999999999999999999999999999999864
No 17
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.4e-65 Score=584.23 Aligned_cols=378 Identities=28% Similarity=0.474 Sum_probs=350.7
Q ss_pred cccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCc
Q psy16434 181 HFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDG 260 (745)
Q Consensus 181 ~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDG 260 (745)
...+ .+++.+|++||..|+++++|||||+||||||+++.|+++|||||+||||+|+++||+++|++++|++||+++|||
T Consensus 3 ~~~~-~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDG 81 (515)
T cd03338 3 KEKP-ADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDG 81 (515)
T ss_pred cccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCC
Confidence 3444 468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Q psy16434 261 TNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLAL 340 (745)
Q Consensus 261 t~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~ 340 (745)
|||+++||++||+++.+++++|+||+.|++||+.|+
T Consensus 82 --------------------------------------------Ttt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~ 117 (515)
T cd03338 82 --------------------------------------------TTSVVVLAGALLSACESLLKKGIHPTVISESFQIAA 117 (515)
T ss_pred --------------------------------------------cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCC-CCCCCccceEEEEccCCCcc
Q psy16434 341 AKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDG-SSSFNVDNVRITKILGSGLF 418 (745)
Q Consensus 341 ~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~-~~~~dl~~I~I~ki~Ggs~~ 418 (745)
+.++++|++++.+. +..+.+.|.++|+|+++||+.+. +++|++|+++|+.+++++. .+.+|+++|+|.++.|++++
T Consensus 118 ~~~~~~L~~~a~~v--~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ 195 (515)
T cd03338 118 KKAVEILDSMSIPV--DLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIE 195 (515)
T ss_pred HHHHHHHHHhccCC--CCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChh
Confidence 99999999998763 33467789999999999999974 7999999999999998753 24689999999999999999
Q ss_pred cceeEeeEEEeecccCC---ceeeeCceEEEeccCCCccccccC------------------------------------
Q psy16434 419 NSEIVQGMVFKRSVEGD---ITKQTKAKIAVYTCPVDIATTETK------------------------------------ 459 (745)
Q Consensus 419 dS~lv~G~~l~~~~~~~---~~~i~nakIlil~~~Le~~k~e~k------------------------------------ 459 (745)
||++++|++|++++.+. |+.++|++|++++++||+.+.+.+
T Consensus 196 ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~l 275 (515)
T cd03338 196 DTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNV 275 (515)
T ss_pred hceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999874 899999999999999999876421
Q ss_pred ---------------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEe
Q psy16434 460 ---------------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKL 488 (745)
Q Consensus 460 ---------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g 488 (745)
+++++..||+|+++++.++|++++++|++
T Consensus 276 vi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~ 355 (515)
T cd03338 276 LLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITG 355 (515)
T ss_pred EEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEe
Confidence 66777889999999999999999999999
Q ss_pred cccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-----------------------------------------
Q psy16434 489 EAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK----------------------------------------- 527 (745)
Q Consensus 489 ~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~----------------------------------------- 527 (745)
++.+++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 356 ~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al 435 (515)
T cd03338 356 VKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADAL 435 (515)
T ss_pred cCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 875358999999999999999999999999999999887
Q ss_pred -HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccce
Q psy16434 528 -VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAK 606 (745)
Q Consensus 528 -~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~k 606 (745)
.+|++|++|||+|+.+++++|++.|.+++.++|+|+.++ ++.||...||+||+.++..+++.|++.+.|+++||++.
T Consensus 436 ~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g--~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii 513 (515)
T cd03338 436 EVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKG--AITNILEENVVQPLLVSTSAITLATETVRMILKIDDIV 513 (515)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCC--CccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhh
Confidence 578999999999999999999999987777899999999 99999999999999999999999999999999999976
Q ss_pred e
Q psy16434 607 I 607 (745)
Q Consensus 607 I 607 (745)
+
T Consensus 514 ~ 514 (515)
T cd03338 514 L 514 (515)
T ss_pred c
Confidence 5
No 18
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.6e-65 Score=583.78 Aligned_cols=382 Identities=27% Similarity=0.437 Sum_probs=350.6
Q ss_pred cccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCC--CCeEEecCHHHHHhhccccChhhHHHHHHHhh
Q psy16434 175 FQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHI--DKLFVTNDAATIIRELEIEHPAAKLIILGSQM 252 (745)
Q Consensus 175 ~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~--g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~ 252 (745)
++++.+..++ ++++..|++|+.+|+++++|||||+||+|||+++. |+++|||||+||||+|+++||+++|++++|++
T Consensus 3 ~~~~~~~~~~-~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~ 81 (519)
T TIGR02341 3 FKDNAQEERG-ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKV 81 (519)
T ss_pred ccCCCccccH-HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence 4556666777 58999999999999999999999999999999985 99999999999999999999999999999999
Q ss_pred hhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHH
Q psy16434 253 QEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEI 332 (745)
Q Consensus 253 qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I 332 (745)
||+++||| |||+|+||++||++|.+|+++|+||+.|
T Consensus 82 qd~~~GDG--------------------------------------------TTtvvvLa~~Ll~~a~~li~~gihp~~I 117 (519)
T TIGR02341 82 QDDEVGDG--------------------------------------------TTSVTVLAAELLREAEKLVNQKIHPQTI 117 (519)
T ss_pred hHhhhCCc--------------------------------------------hhHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccccccC-cccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccceEEE
Q psy16434 333 VNGYKLALAKTLEILPTLTCFEVKDV-RNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRIT 410 (745)
Q Consensus 333 ~~g~~~a~~~~l~~L~~~s~~~~~~~-~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ 410 (745)
++||+.|++.++++|++++++...+. .+++.|.++|+|++++|+.+. .+.|++++++|+..+.+ ..|+++|+|.
T Consensus 118 i~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~----~~~~~~i~i~ 193 (519)
T TIGR02341 118 ISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKG----SGNLDAIQII 193 (519)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhcc----CCChhheEEE
Confidence 99999999999999999988743221 135789999999999998875 69999999999999853 2467789999
Q ss_pred EccCCCcccceeEeeEEEeecccC-CceeeeCceEEEeccCCCcccccc-C-----------------------------
Q psy16434 411 KILGSGLFNSEIVQGMVFKRSVEG-DITKQTKAKIAVYTCPVDIATTET-K----------------------------- 459 (745)
Q Consensus 411 ki~Ggs~~dS~lv~G~~l~~~~~~-~~~~i~nakIlil~~~Le~~k~e~-k----------------------------- 459 (745)
++.|+++++|++++|+++++.+.+ +|++++||+|++++++||+.+++. +
T Consensus 194 k~~G~s~~~s~l~~G~v~~~~~~~~~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I 273 (519)
T TIGR02341 194 KKLGGSLNDSYLDEGFLLEKKIGVNQPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKI 273 (519)
T ss_pred EccCCCcccceEEeeEEEeccCCCCCceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999864 689999999999999999877542 1
Q ss_pred -----------------------------------------------------CCCCcccccccccEEEEEECCeeEEEE
Q psy16434 460 -----------------------------------------------------TPPAASELGYADSVAVDELGDTAVVVF 486 (745)
Q Consensus 460 -----------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~ 486 (745)
+++++.+||+|+.+++..+|++++++|
T Consensus 274 ~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~ 353 (519)
T TIGR02341 274 LKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKF 353 (519)
T ss_pred HHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecccccCCccccccCceEEEEEECCEEEEEE
Confidence 667888899999999999999999999
Q ss_pred EecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH---------------------------------------
Q psy16434 487 KLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK--------------------------------------- 527 (745)
Q Consensus 487 ~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~--------------------------------------- 527 (745)
.|++. ++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 354 ~~~~~-~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ 432 (519)
T TIGR02341 354 SGVKL-GEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFAR 432 (519)
T ss_pred EcCCC-CCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Confidence 99986 78999999999999999999999999999999986
Q ss_pred ---HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhccccc
Q psy16434 528 ---VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTK 604 (745)
Q Consensus 528 ---~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn 604 (745)
.+|++|++|||+|+.+++++|++.|.++..++|+|+.++ ++.||...|||||+.+|..+++.|++.+.|++++|+
T Consensus 433 Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g--~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ 510 (519)
T TIGR02341 433 ALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEG--EIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDN 510 (519)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCC--cccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHH
Confidence 679999999999999999999999988777899999999 999999999999999999999999999999999998
Q ss_pred ceee
Q psy16434 605 AKIA 608 (745)
Q Consensus 605 ~kIl 608 (745)
+.+.
T Consensus 511 ii~~ 514 (519)
T TIGR02341 511 IIKA 514 (519)
T ss_pred HHhc
Confidence 7653
No 19
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.5e-65 Score=583.47 Aligned_cols=384 Identities=32% Similarity=0.527 Sum_probs=355.7
Q ss_pred ecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhh
Q psy16434 174 IFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQ 253 (745)
Q Consensus 174 ~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~q 253 (745)
+++++.+.++| ++++..|++||.+|+++++|||||+||+|||+++.|+++|||||+||+|+|+++||+|+|++++|++|
T Consensus 3 ~~~~~~~~~~~-~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 81 (517)
T cd03343 3 ILKEGTQRTSG-RDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQ 81 (517)
T ss_pred ccCCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHH
Confidence 35677777778 57999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHH
Q psy16434 254 EEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIV 333 (745)
Q Consensus 254 d~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~ 333 (745)
|+++||| |||+++||++||+++.+++++|+||..|+
T Consensus 82 ~~~~GDG--------------------------------------------Ttt~viLa~~ll~~~~~li~~gi~p~~I~ 117 (517)
T cd03343 82 DEEVGDG--------------------------------------------TTTAVVLAGELLEKAEDLLDQNIHPTVII 117 (517)
T ss_pred HHHhCCC--------------------------------------------hhHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 9999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCC--CCCCccceEEE
Q psy16434 334 NGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGS--SSFNVDNVRIT 410 (745)
Q Consensus 334 ~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~--~~~dl~~I~I~ 410 (745)
+||++|++.+++.|++++.+. +..+++.|.++|+++++||+.+. .++|++|+++|+.+++++.. ..+|+++|+|.
T Consensus 118 ~g~~~a~~~~~~~L~~~s~~v--~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~ 195 (517)
T cd03343 118 EGYRLAAEKALELLDEIAIKV--DPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIE 195 (517)
T ss_pred HHHHHHHHHHHHHHHHhhccc--CCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEE
Confidence 999999999999999998773 33467889999999999999985 69999999999999976522 25888999999
Q ss_pred EccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC-----------------------------
Q psy16434 411 KILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK----------------------------- 459 (745)
Q Consensus 411 ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k----------------------------- 459 (745)
++.|++++||++++|++|++++.+ +|+.++||+|++++++||+.+++.+
T Consensus 196 k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i 275 (517)
T cd03343 196 KKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKI 275 (517)
T ss_pred eecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999976 4889999999999999999887632
Q ss_pred -----------------------------------------------------CCCCcccccccccEEEEEECCeeEEEE
Q psy16434 460 -----------------------------------------------------TPPAASELGYADSVAVDELGDTAVVVF 486 (745)
Q Consensus 460 -----------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~ 486 (745)
+++++..||+|+++++.++|++++++|
T Consensus 276 ~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~ 355 (517)
T cd03343 276 ADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFV 355 (517)
T ss_pred HhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHHhCCEEecchhhCChhhCCccceEEEEEECCeEEEEE
Confidence 667788899999999999999999999
Q ss_pred EecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH---------------------------------------
Q psy16434 487 KLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK--------------------------------------- 527 (745)
Q Consensus 487 ~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~--------------------------------------- 527 (745)
.|+.. ..++||++||+++.+++|++|+++||+++++++++
T Consensus 356 ~~~~~-~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~ 434 (517)
T cd03343 356 EGCKN-PKAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFAD 434 (517)
T ss_pred EcCCC-CceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99876 78999999999999999999999999999999887
Q ss_pred ---HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhccccc
Q psy16434 528 ---VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTK 604 (745)
Q Consensus 528 ---~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn 604 (745)
.+|++|++|||+|+.+++++|++.|..++.++|+|+.++ ++.|+...||+||+.+|.++++.|++.+.+++++|+
T Consensus 435 aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g--~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ 512 (517)
T cd03343 435 ALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTG--EVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDD 512 (517)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCC--CccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhH
Confidence 679999999999999999999999877777899999999 999999999999999999999999999999999998
Q ss_pred cee
Q psy16434 605 AKI 607 (745)
Q Consensus 605 ~kI 607 (745)
+.+
T Consensus 513 ii~ 515 (517)
T cd03343 513 VIA 515 (517)
T ss_pred hhh
Confidence 764
No 20
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.4e-64 Score=569.13 Aligned_cols=382 Identities=57% Similarity=0.944 Sum_probs=348.8
Q ss_pred ccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCcc
Q psy16434 182 FSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 182 ~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDGt 261 (745)
.++.++++..|+++|.+|+++++|||||+||+|||+++.|+++|||||+||+|+|+++||+++|+++++++||+++|||
T Consensus 3 ~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDG- 81 (472)
T cd03341 3 YSGLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDG- 81 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCC-
Confidence 3445789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+++|+++||+++.+++++|+||+.|++||+.|++
T Consensus 82 -------------------------------------------TTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~ 118 (472)
T cd03341 82 -------------------------------------------TNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALK 118 (472)
T ss_pred -------------------------------------------hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccce
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~ 421 (745)
.+++.|++++.+...+..+.+.|.++++|+++||..++.++|++|+++|+.+++++..+.+++++|+|+++.|++++||+
T Consensus 119 ~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~ 198 (472)
T cd03341 119 KALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDSK 198 (472)
T ss_pred HHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccce
Confidence 99999999886533333466779999999999999888899999999999999876446789999999999999999999
Q ss_pred eEeeEEEeecccCCceeeeCceEEEeccCCCcccccc---C---------------------------------------
Q psy16434 422 IVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTET---K--------------------------------------- 459 (745)
Q Consensus 422 lv~G~~l~~~~~~~~~~i~nakIlil~~~Le~~k~e~---k--------------------------------------- 459 (745)
+++|++|++.+.+++++++||+|++++++||+...-. +
T Consensus 199 lv~Giv~~~~~~~~~~~~~n~~Ili~~~~Le~g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~ 278 (472)
T cd03341 199 VVRGMVFKREPEGSVKRVKKAKVAVFSCPFDIGVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLP 278 (472)
T ss_pred EEeeEEEccccCCCceeccCCcEEEEeccccCCCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEec
Confidence 9999999998888889999999999999999822210 0
Q ss_pred --CCCCcccccccccEEEEEECCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------
Q psy16434 460 --TPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------- 527 (745)
Q Consensus 460 --~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------- 527 (745)
+++++..||+|+++++.++|++++++|.++...++++||++||+++.+++|++|+++||+++++++++
T Consensus 279 ~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~ 358 (472)
T cd03341 279 RLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGA 358 (472)
T ss_pred ccccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCH
Confidence 55677889999999999999999999998864367899999999999999999999999999999886
Q ss_pred --------------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccc
Q psy16434 528 --------------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAE 575 (745)
Q Consensus 528 --------------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g 575 (745)
.+|++|++|||+|+.+++++|+..|.++..++|+|+.+++.++.||..
T Consensus 359 ~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~ 438 (472)
T cd03341 359 TEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKE 438 (472)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhh
Confidence 679999999999999999999998877777899999876336789999
Q ss_pred ccccccccchhhHhhhhhhcchhhccccccee
Q psy16434 576 AGILDLYLTKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 576 ~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kI 607 (745)
.||+||+.|+..+++.|++.+.|++++|+...
T Consensus 439 ~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 470 (472)
T cd03341 439 AGIFDHLATKKWAIKLATEAAVTVLRVDQIIM 470 (472)
T ss_pred ccceecHHHHHHHHHHHHHHHHHHhhhcceee
Confidence 99999999999999999999999999998764
No 21
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.9e-64 Score=577.60 Aligned_cols=379 Identities=30% Similarity=0.478 Sum_probs=345.0
Q ss_pred ccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcC
Q psy16434 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGD 259 (745)
Q Consensus 180 ~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GD 259 (745)
+..+| ++++..|++||..|+++++|||||+||+|||+++.|+++|||||+||+|+|+++||+|+|++++|++||+++||
T Consensus 6 ~~~~~-~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GD 84 (536)
T TIGR02340 6 ERTSG-QDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGD 84 (536)
T ss_pred ceecH-HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCC
Confidence 34556 58999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q psy16434 260 GTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLA 339 (745)
Q Consensus 260 Gt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a 339 (745)
| |||+++||++||+++.+|+++|+||+.|++||+.|
T Consensus 85 G--------------------------------------------TTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a 120 (536)
T TIGR02340 85 G--------------------------------------------TTSVVIIAAELLKRADELIKRKVHPTSIISGYRLA 120 (536)
T ss_pred C--------------------------------------------hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999
Q ss_pred HHHHHHhcccc-cccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCC-CCC--CCCccceEEEEccC
Q psy16434 340 LAKTLEILPTL-TCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPD-GSS--SFNVDNVRITKILG 414 (745)
Q Consensus 340 ~~~~l~~L~~~-s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~-~~~--~~dl~~I~I~ki~G 414 (745)
++.++++|++. +.+. +..+.+.|.++|+|+++||+.+. .++|++|+++|+..++.. ..+ .+|+++|+++++.|
T Consensus 121 ~~~~~~~L~~~~~~~~--~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G 198 (536)
T TIGR02340 121 CKEAVKYIKENLSVSV--DELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHG 198 (536)
T ss_pred HHHHHHHHHHhhccCC--CcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecC
Confidence 99999999874 6653 23356789999999999999975 799999999999999632 122 47889999999999
Q ss_pred CCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC---------------------------------
Q psy16434 415 SGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK--------------------------------- 459 (745)
Q Consensus 415 gs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k--------------------------------- 459 (745)
+++.+|++++|++|++++.+ +|++++||+|++++++|++.+++.+
T Consensus 199 ~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g 278 (536)
T TIGR02340 199 GSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAG 278 (536)
T ss_pred CCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999975 5899999999999999999885531
Q ss_pred -------------------------------------------------C------CCCcccccccccEEEEEECCeeEE
Q psy16434 460 -------------------------------------------------T------PPAASELGYADSVAVDELGDTAVV 484 (745)
Q Consensus 460 -------------------------------------------------~------~p~a~~LG~a~~vq~~eiGdtsvt 484 (745)
. ++++..||+|++++++++|+++++
T Consensus 279 ~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~ 358 (536)
T TIGR02340 279 ANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECI 358 (536)
T ss_pred CCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEE
Confidence 1 234456999999999999999999
Q ss_pred EEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-------------------------------------
Q psy16434 485 VFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------- 527 (745)
Q Consensus 485 i~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------- 527 (745)
+|.|+.. +.++||++||+|+.+++|++|+++||+++++++++
T Consensus 359 ~i~~~~~-~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~f 437 (536)
T TIGR02340 359 LIKGTKG-RKSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEF 437 (536)
T ss_pred EEEcCCC-CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHH
Confidence 9998875 78999999999999999999999999999999887
Q ss_pred -----HHHHHHHhhccchhhHHHHHHHHHhhcC--------CccceeeecCCCcceeecccccccccccchhhHhhhhhh
Q psy16434 528 -----VFVKTLAENTGVKSNEVISKLYSAHNEG--------KKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATS 594 (745)
Q Consensus 528 -----~IPr~LaeNAGld~~~vlsKL~~~h~~g--------~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e 594 (745)
.+|++|++|||+|+.+++++|++.|..+ ..++|+|+.++ ++.||...||+||+.+|..+++.|++
T Consensus 438 a~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g--~~~d~~~~gI~Dp~~~k~~~l~~A~e 515 (536)
T TIGR02340 438 AEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNG--KIRDNKEAGVLEPAVSKVKSLKFATE 515 (536)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCC--ccccchhccceecHHHHHHHHHHHHH
Confidence 6789999999999999999999988765 34689999999 99999999999999999999999999
Q ss_pred cchhhcccccceee
Q psy16434 595 AANTILQQTKAKIA 608 (745)
Q Consensus 595 ~a~mil~IDn~kIl 608 (745)
.+.|+++||++.+.
T Consensus 516 ~a~~iL~ID~ii~~ 529 (536)
T TIGR02340 516 AAITILRIDDLIKL 529 (536)
T ss_pred HHHHHHhhhhhhhc
Confidence 99999999998754
No 22
>KOG0358|consensus
Probab=100.00 E-value=5.9e-65 Score=533.11 Aligned_cols=374 Identities=27% Similarity=0.477 Sum_probs=350.8
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCccchhh
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVI 265 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDGt~~~~ 265 (745)
++.|.+||++++++++.++|||||+||||||++..|+++|||||+||||.|++-||+++|++++|..||.++|||
T Consensus 25 ~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDG----- 99 (534)
T KOG0358|consen 25 EQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDG----- 99 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCC-----
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q psy16434 266 IFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLE 345 (745)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~~~l~ 345 (745)
|||||+|||.||..+.+|+++||||+.|...|+.|.+.+++
T Consensus 100 ---------------------------------------TTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~ 140 (534)
T KOG0358|consen 100 ---------------------------------------TTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVD 140 (534)
T ss_pred ---------------------------------------ceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999
Q ss_pred hcccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcC-CCCCCCCccceEEEEccCCCcccceeE
Q psy16434 346 ILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILP-DGSSSFNVDNVRITKILGSGLFNSEIV 423 (745)
Q Consensus 346 ~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~-~~~~~~dl~~I~I~ki~Ggs~~dS~lv 423 (745)
+|++++.+ .+..+++.|.+-|.|+|+||+.|+ ...|+.+.++|+.++.. ....+.|+.+|+|.|..||.++|++++
T Consensus 141 il~~m~~~--velsdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i 218 (534)
T KOG0358|consen 141 ILDEMSVP--VELSDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELI 218 (534)
T ss_pred HHHhcCCC--cccCcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhh
Confidence 99999988 456789999999999999999985 78999999999999864 344668899999999999999999999
Q ss_pred eeEEEeecccC--CceeeeCceEEEeccCCCccccccC------------------------------------------
Q psy16434 424 QGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK------------------------------------------ 459 (745)
Q Consensus 424 ~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k------------------------------------------ 459 (745)
+|++|++.... -|++++++||.++.|.|+.+|+.+.
T Consensus 219 ~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKS 298 (534)
T KOG0358|consen 219 KGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKS 298 (534)
T ss_pred cceEEeeecccCCCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHH
Confidence 99999988754 4999999999999999999998642
Q ss_pred ---------------------------------------------CCCCcccccccccEEEE-EECCeeEEEEEeccccc
Q psy16434 460 ---------------------------------------------TPPAASELGYADSVAVD-ELGDTAVVVFKLEAAES 493 (745)
Q Consensus 460 ---------------------------------------------~~p~a~~LG~a~~vq~~-eiGdtsvti~~g~~l~~ 493 (745)
++.++..||+|+.+++. .-|+.+++-+.|....+
T Consensus 299 ILRdavsDLAlHfL~klkimvikdieRediefick~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g 378 (534)
T KOG0358|consen 299 ILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLGCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAG 378 (534)
T ss_pred HHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcCCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCC
Confidence 78899999999999887 44667999999998768
Q ss_pred ceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------------HHHH
Q psy16434 494 RIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------------VFVK 531 (745)
Q Consensus 494 ~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------------~IPr 531 (745)
.+++|++||.+..+++|.+|++|||||++|...+ .||.
T Consensus 379 ~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~ 458 (534)
T KOG0358|consen 379 RTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPY 458 (534)
T ss_pred CceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccH
Confidence 8999999999999999999999999999999886 5799
Q ss_pred HHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhccccccee
Q psy16434 532 TLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 532 ~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kI 607 (745)
+||+|||+++..+++.|++.|++|...+||++..| .+.++....+.+|.+|...++..|.|...|+++|||+..
T Consensus 459 tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg--~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~ 532 (534)
T KOG0358|consen 459 TLAENAGLNPIATVTELRNRHAQGEKNAGINVRKG--GITNILEENVVQPLLVSISAITLATETVRSILKIDDIVN 532 (534)
T ss_pred hHHhhCCCChhhHHHHHHHHHhcCCcccceeeecc--cchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999999999999999999999999999 999999999999999999999999999999999998643
No 23
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=3e-62 Score=553.33 Aligned_cols=371 Identities=36% Similarity=0.552 Sum_probs=345.5
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCccchhh
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVI 265 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDGt~~~~ 265 (745)
++++..|++||..|+++++|||||+||+|||+++.|+++|||||+||+|+|+++||+++|+++++++||+++|||
T Consensus 7 ~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDG----- 81 (464)
T cd00309 7 EEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDG----- 81 (464)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCc-----
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q psy16434 266 IFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLE 345 (745)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~~~l~ 345 (745)
|||+++|+++||+++.+++++|+||+.|++||+.|++.+++
T Consensus 82 ---------------------------------------Ttt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~ 122 (464)
T cd00309 82 ---------------------------------------TTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALE 122 (464)
T ss_pred ---------------------------------------hhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999
Q ss_pred hcccccccccccCcccccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccceeEe
Q psy16434 346 ILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQ 424 (745)
Q Consensus 346 ~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~lv~ 424 (745)
.|++++++. +..+.+.|+++|+|+++||+.+ ++++|++++++|+.+++++.. .++.+.|+|+++.||++.||++++
T Consensus 123 ~L~~~~~~~--~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~-~~~~~~I~i~k~~gg~~~ds~li~ 199 (464)
T cd00309 123 ILKEIAVPI--DVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENG-DVDLGVIRVEKKKGGSLEDSELVV 199 (464)
T ss_pred HHHHhcCcc--CCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccC-ccccceEEEEecCCCCcccceeee
Confidence 999998773 3457788999999999999987 589999999999999987533 677889999999999999999999
Q ss_pred eEEEeecccCC--ceeeeCceEEEeccCCCc----ccccc----------C---------------------------CC
Q psy16434 425 GMVFKRSVEGD--ITKQTKAKIAVYTCPVDI----ATTET----------K---------------------------TP 461 (745)
Q Consensus 425 G~~l~~~~~~~--~~~i~nakIlil~~~Le~----~k~e~----------k---------------------------~~ 461 (745)
|++|++++.++ |+.++||+|++++++||+ .+.-. + ++
T Consensus 200 Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~ 279 (464)
T cd00309 200 GMVFDKGYLSPYMPKRLENAKILLLDCKLEYVVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLED 279 (464)
T ss_pred eEEEecCCCCCCCceeecCceEEEEecCcceEEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEeccccc
Confidence 99999999875 799999999999999987 22100 0 66
Q ss_pred CCcccccccccEEEEEECCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH--------------
Q psy16434 462 PAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK-------------- 527 (745)
Q Consensus 462 p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~-------------- 527 (745)
+++..||+|+.+++.++|++++++|.++.. ++++||++||+|+.+++|++|+++||+++++++++
T Consensus 280 ~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ 358 (464)
T cd00309 280 LTPEDLGTAGLVEETKIGDEKYTFIEGCKG-GKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIE 358 (464)
T ss_pred CCcccCccccEEEEEEEcCeeEEEEEecCC-CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHH
Confidence 778899999999999999999999998875 78899999999999999999999999999999887
Q ss_pred ----------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccc
Q psy16434 528 ----------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGIL 579 (745)
Q Consensus 528 ----------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~ 579 (745)
.+|++|++|||+|+.+++++|++.|..+..++|+|..++ ++.||...||+
T Consensus 359 ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~--~~~d~~~~gI~ 436 (464)
T cd00309 359 LSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETG--EIVDMKEAGII 436 (464)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCC--cEeehhhccCe
Confidence 679999999999999999999999987777889999999 99999999999
Q ss_pred ccccchhhHhhhhhhcchhhcccccce
Q psy16434 580 DLYLTKMWALKYATSAANTILQQTKAK 606 (745)
Q Consensus 580 Ds~lVkG~vL~~A~e~a~mil~IDn~k 606 (745)
||+.++..+++.|++.+.+++++|.+.
T Consensus 437 dp~~vk~~~l~~A~e~a~~iL~id~ii 463 (464)
T cd00309 437 DPLKVKRQALKSATEAASLILTIDDII 463 (464)
T ss_pred ecHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 999999999999999999999999764
No 24
>KOG0362|consensus
Probab=100.00 E-value=1.1e-60 Score=516.12 Aligned_cols=389 Identities=56% Similarity=0.863 Sum_probs=360.8
Q ss_pred ecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhh
Q psy16434 174 IFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQ 253 (745)
Q Consensus 174 ~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~q 253 (745)
+|++|.++.+|.+++..+|++||..|+++++|+|||+||+|||+|+.|++.+|||.+||+++|+++||+||||++++++|
T Consensus 13 ~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPaakllv~a~~~q 92 (537)
T KOG0362|consen 13 MLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLLVEATQMQ 92 (537)
T ss_pred HHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHH
Q psy16434 254 EEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIV 333 (745)
Q Consensus 254 d~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~ 333 (745)
+++.||| |++||+|+++||++|.+||..|++|.+|+
T Consensus 93 ~~~iGDg--------------------------------------------tnfvvvla~~LLe~Ae~li~~Gl~~~ei~ 128 (537)
T KOG0362|consen 93 EEEIGDG--------------------------------------------TNFVVVLAGALLEQAEELIRMGLTPAEIS 128 (537)
T ss_pred HHhhCCC--------------------------------------------ceEeehhHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEcc
Q psy16434 334 NGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKIL 413 (745)
Q Consensus 334 ~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~ 413 (745)
+||+.|...+++.|+++.+....+..|.+ .+++++++||.+++++++++|+++|+..+.|. +.|+.++|+|.|+.
T Consensus 129 ~gy~~A~~~~~e~l~~lv~~~~~d~~d~~---~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~--~~FnvdnIrVcKi~ 203 (537)
T KOG0362|consen 129 EGYETATKEALEILPELVVQSIGDLEDKE---WALRSVIMSKQYGNEDFLTKLVAKACVSILPL--MSFNVDNIRVCKIL 203 (537)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcccccChH---HHHHHHHHHhhcchHHHHHHHHHHHHHhhccc--ccccccceEEEEEe
Confidence 99999999999999998766444455554 88999999999999999999999999999987 45999999999999
Q ss_pred CCCcccceeEeeEEEeecccCCceeeeCceEEEeccCCCccccccC----------------------------------
Q psy16434 414 GSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK---------------------------------- 459 (745)
Q Consensus 414 Ggs~~dS~lv~G~~l~~~~~~~~~~i~nakIlil~~~Le~~k~e~k---------------------------------- 459 (745)
|+++++|.++.||+|++...+.+++-+.++|++++||+|...+++|
T Consensus 204 Gg~l~~S~Vv~GmVfkr~~eG~v~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gv 283 (537)
T KOG0362|consen 204 GGGLEDSCVVCGMVFKRDPEGEVKSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGV 283 (537)
T ss_pred cCCcccceeeEEEEeccccCCcccccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999998865
Q ss_pred ------------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccc
Q psy16434 460 ------------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAA 491 (745)
Q Consensus 460 ------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l 491 (745)
..|....||+|+++...++||+.+|+|..+.-
T Consensus 284 kViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~ 363 (537)
T KOG0362|consen 284 KVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRTVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWEST 363 (537)
T ss_pred eEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHHHcCCccchhccCCCCccccccceeeeeecCCceEEEEeeccC
Confidence 66888999999999999999999999988754
Q ss_pred ccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------------HH
Q psy16434 492 ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------------VF 529 (745)
Q Consensus 492 ~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------------~I 529 (745)
..++.|+++||+++.++|+.||+++|+++..|...+ .+
T Consensus 364 ~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~ 443 (537)
T KOG0362|consen 364 GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVL 443 (537)
T ss_pred CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccc
Confidence 468899999999999999999999999999998776 46
Q ss_pred HHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccceeee
Q psy16434 530 VKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIAV 609 (745)
Q Consensus 530 Pr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIll 609 (745)
|++|++|||++.+++++++...|. +...+|+|+.... .+.|+...++||.+..|.+.++.|++++.+++++|++.++.
T Consensus 444 PktlaEnagl~~~evia~ly~~h~-~g~~~g~di~~e~-~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak 521 (537)
T KOG0362|consen 444 PKTLAENAGLAVTEVIAKLYAVHQ-GGKNLGMDIEAEG-GTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAK 521 (537)
T ss_pred cHhHHHhcCCcHHHHHHHHHHhhc-CCCcceeeeeccc-cccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEec
Confidence 999999999999999999999987 4456888987762 48899999999999999999999999999999999998876
Q ss_pred eccC
Q psy16434 610 YTCP 613 (745)
Q Consensus 610 l~~~ 613 (745)
=.+.
T Consensus 522 ~agg 525 (537)
T KOG0362|consen 522 KAGG 525 (537)
T ss_pred ccCC
Confidence 5543
No 25
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-59 Score=534.01 Aligned_cols=375 Identities=33% Similarity=0.456 Sum_probs=341.1
Q ss_pred cccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhc
Q psy16434 179 DKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMG 258 (745)
Q Consensus 179 ~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~G 258 (745)
.+..++ ++++..|+.|+..|+++|+|||||+||||||+++.|+++|||||+||+|+|+++||.|||++++|++||+++|
T Consensus 4 ~~~~~~-~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~G 82 (524)
T COG0459 4 KERKFG-EDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAG 82 (524)
T ss_pred cccccc-HHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhc
Confidence 345566 5899999999999999999999999999999999779999999999999999999999999999999999999
Q ss_pred CccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q psy16434 259 DGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKL 338 (745)
Q Consensus 259 DGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~ 338 (745)
|| |||++|||++||+++.+++++|+||+.|++||++
T Consensus 83 DG--------------------------------------------TTtavVLa~all~ea~~li~~gi~P~~I~~G~~~ 118 (524)
T COG0459 83 DG--------------------------------------------TTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRL 118 (524)
T ss_pred Cc--------------------------------------------hHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99 9999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcc
Q psy16434 339 ALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLF 418 (745)
Q Consensus 339 a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~ 418 (745)
|.+.+++.|++++.+...+ +.+. +++.+++++|..+++++|++|+++|+.+++.... |++.|++.+..|++..
T Consensus 119 A~~~~~e~l~~~a~~v~~~--~~~~--~~~~t~v~sk~~~~~~~i~~lv~~Av~~v~~~~~---d~~~i~~vk~~gg~~~ 191 (524)
T COG0459 119 AVEKAVEELKEIAKPVSDS--EEEL--KIAITSVASKSANSDEEIGELVVEAVEKVGKEQS---DLDGIIIVKESGGSET 191 (524)
T ss_pred HHHHHHHHHHHhhccCCcc--hhhh--hhhhheeeeeeccChHHHHHHHHHHHHHhccccc---ccCCeEEEEecCCCcc
Confidence 9999999999998874322 2222 8999999999997779999999999999987532 7889999999999999
Q ss_pred cceeEeeEEEeecccC---Cc-eeeeCceEEEeccCCCccccccC-----------------------------------
Q psy16434 419 NSEIVQGMVFKRSVEG---DI-TKQTKAKIAVYTCPVDIATTETK----------------------------------- 459 (745)
Q Consensus 419 dS~lv~G~~l~~~~~~---~~-~~i~nakIlil~~~Le~~k~e~k----------------------------------- 459 (745)
++++++||+|++++.+ +| +.++||+||+++++|++.+++.+
T Consensus 192 e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~ 271 (524)
T COG0459 192 ELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGA 271 (524)
T ss_pred ceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999997654 48 88999999999999999998753
Q ss_pred --------------------------------------------------CCCCcccccc--cccEEEEEECCeeEEEEE
Q psy16434 460 --------------------------------------------------TPPAASELGY--ADSVAVDELGDTAVVVFK 487 (745)
Q Consensus 460 --------------------------------------------------~~p~a~~LG~--a~~vq~~eiGdtsvti~~ 487 (745)
++++...+|. |+.+++..+|++.+++|.
T Consensus 272 ~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~ 351 (524)
T COG0459 272 NVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQ 351 (524)
T ss_pred CEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccCceEEeecccCceeecCccccceEEEeeccchhhhhhh
Confidence 5667788999 999999999999999999
Q ss_pred eccc-ccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH---------------------------------------
Q psy16434 488 LEAA-ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK--------------------------------------- 527 (745)
Q Consensus 488 g~~l-~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~--------------------------------------- 527 (745)
+++. .+++++|++||+++.+++|.+|+++|||++++++++
T Consensus 352 ~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a 431 (524)
T COG0459 352 ERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFA 431 (524)
T ss_pred hhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHH
Confidence 9874 367899999999999999999999999999999987
Q ss_pred ----HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcce-eecccccccccccchhhHhhhhhhcchhhccc
Q psy16434 528 ----VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSV-IDAAEAGILDLYLTKMWALKYATSAANTILQQ 602 (745)
Q Consensus 528 ----~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI-~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~I 602 (745)
.+|++|++|||+|+.+++++|++.|. ...+|+|+.++ ++ .||...||+||..|+..+++.|++.+.|++++
T Consensus 432 ~Ale~ip~~La~NaG~d~~~v~~~L~~~~~--~~~~G~d~~~~--~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~ 507 (524)
T COG0459 432 RALEAPPRQLAENAGLDPIEVLSKLRSAHA--TTNYGIDAFTG--EYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTI 507 (524)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHhccc--CCccceeccCC--ccccchHhccCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999775 34589999998 77 77999999999999999999999999999999
Q ss_pred ccceeee
Q psy16434 603 TKAKIAV 609 (745)
Q Consensus 603 Dn~kIll 609 (745)
|++....
T Consensus 508 d~iI~~~ 514 (524)
T COG0459 508 DDIIAAK 514 (524)
T ss_pred HHhhccC
Confidence 9876543
No 26
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=3.4e-56 Score=512.79 Aligned_cols=358 Identities=24% Similarity=0.309 Sum_probs=316.1
Q ss_pred cccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccCh----hhHHHHHHHhhhhch
Q psy16434 181 HFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHP----AAKLIILGSQMQEEE 256 (745)
Q Consensus 181 ~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP----~akll~~~s~~qd~~ 256 (745)
..++ ++++..|+++|..|+++++|||||+||+|||+++.|+++|||||+||+|+|+++|| +|+|++++|++||++
T Consensus 17 ~~~~-~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~e 95 (555)
T PTZ00114 17 IRFG-DEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDK 95 (555)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccc
Confidence 3445 68999999999999999999999999999999999999999999999999999999 899999999999888
Q ss_pred hcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHH
Q psy16434 257 MGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGY 336 (745)
Q Consensus 257 ~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~ 336 (745)
+||| |||+|+||++||+++.+|+++|+||..|++||
T Consensus 96 vGDG--------------------------------------------TTtvvvLa~~LL~~a~~li~~GihP~~I~~G~ 131 (555)
T PTZ00114 96 AGDG--------------------------------------------TTTATILARAIFREGCKAVAAGLNPMDLKRGI 131 (555)
T ss_pred cCCc--------------------------------------------ccHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 8888 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCC
Q psy16434 337 KLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSG 416 (745)
Q Consensus 337 ~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs 416 (745)
+.|.+.+++.|++++.+. .+.+.|.++|+|++++ +++|++|+++|+.+++++ + .|.+..|++
T Consensus 132 ~~A~~~~~~~L~~~s~~v----~~~~~l~~va~ts~~~-----~~~l~~li~eAv~~vg~~--g-------~I~~~~g~~ 193 (555)
T PTZ00114 132 DLAVKVVLESLKEQSRPV----KTKEDILNVATISANG-----DVEIGSLIADAMDKVGKD--G-------TITVEDGKT 193 (555)
T ss_pred HHHHHHHHHHHHHhccCC----CCHHHHHHHHHHHcCC-----hHHHHHHHHHHHHHhCcC--C-------cEEEcCCCC
Confidence 999999999999998763 2566799999999865 678999999999999754 2 267788999
Q ss_pred cccc-eeEeeEEEeecccCC---------ceeeeCceEEEeccCCCcccccc-----------C----------------
Q psy16434 417 LFNS-EIVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATTET-----------K---------------- 459 (745)
Q Consensus 417 ~~dS-~lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~e~-----------k---------------- 459 (745)
+.|| ++++|++|++++.++ ++.++||+||+++++|+..+.-. +
T Consensus 194 ~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L 273 (555)
T PTZ00114 194 LEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTL 273 (555)
T ss_pred ccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHH
Confidence 9998 899999999998753 78899999999999998332100 0
Q ss_pred ------------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEecc-
Q psy16434 460 ------------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEA- 490 (745)
Q Consensus 460 ------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~- 490 (745)
+++++++||+|+++++.+ .+++++.|+.
T Consensus 274 ~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~~~~~~ 350 (555)
T PTZ00114 274 IINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILTGGGD 350 (555)
T ss_pred HHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEEeCCCc
Confidence 234556799999999988 5667776543
Q ss_pred ---------------------------------cccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------
Q psy16434 491 ---------------------------------AESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------- 527 (745)
Q Consensus 491 ---------------------------------l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------- 527 (745)
++++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 351 ~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~gvVpGGGa~ 430 (555)
T PTZ00114 351 KAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVA 430 (555)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcHH
Confidence 1367899999999999999999999999999999775
Q ss_pred ---------------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecc
Q psy16434 528 ---------------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAA 574 (745)
Q Consensus 528 ---------------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~ 574 (745)
.+|++|++|||+|+.+++++|++ .+..++|+|+.++ ++.||.
T Consensus 431 e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~---~~~~~~G~d~~~g--~~~d~~ 505 (555)
T PTZ00114 431 LLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE---KKDPSFGYDAQTG--EYVNMF 505 (555)
T ss_pred HHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh---cCCCCEeEeCCCC--cEeeHH
Confidence 57899999999999999999976 3456799999999 999999
Q ss_pred cccccccccchhhHhhhhhhcchhhcccccceeee
Q psy16434 575 EAGILDLYLTKMWALKYATSAANTILQQTKAKIAV 609 (745)
Q Consensus 575 g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIll 609 (745)
..||+||..|+..+++.|++.+.+++++|++.+..
T Consensus 506 ~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~ 540 (555)
T PTZ00114 506 EAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDL 540 (555)
T ss_pred hCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhC
Confidence 99999999999999999999999999999987763
No 27
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=8.1e-56 Score=507.83 Aligned_cols=353 Identities=21% Similarity=0.311 Sum_probs=314.8
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccCh----hhHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHP----AAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP----~akll~~~s~~qd~~~GDGt 261 (745)
++++..|++|+..++++++|||||+||+|||+++.|+++|||||+||||+|+++|| .++|++++|++||+++|||
T Consensus 9 ~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e~GDG- 87 (542)
T PRK00013 9 EDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDG- 87 (542)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcccCCc-
Confidence 58999999999999999999999999999999999999999999999999999999 6999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+++||++||+++.+++++|+||..|++||+.|++
T Consensus 88 -------------------------------------------TTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~ 124 (542)
T PRK00013 88 -------------------------------------------TTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVE 124 (542)
T ss_pred -------------------------------------------cchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccce
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~ 421 (745)
.+++.|++++.+. .+.+.|.++|.++++ +++.|++++++|+..++++ + .|+|.+..| +..+++
T Consensus 125 ~~~~~L~~~a~~~----~~~~~l~~va~ts~~-----~~~~ls~lv~~Av~~v~~~--g-----~i~i~~~~~-~~~~~~ 187 (542)
T PRK00013 125 AAVEELKKISKPV----EDKEEIAQVATISAN-----GDEEIGKLIAEAMEKVGKE--G-----VITVEESKG-FETELE 187 (542)
T ss_pred HHHHHHHHhccCC----CCHHHHHHHHHhccc-----chHHHHHHHHHHHHHhCcC--C-----cEEEEEcCC-CCceEE
Confidence 9999999998763 256779999988875 4789999999999999754 2 288888777 788999
Q ss_pred eEeeEEEeecccCC---------ceeeeCceEEEeccCCCcccccc---------C------------------------
Q psy16434 422 IVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATTET---------K------------------------ 459 (745)
Q Consensus 422 lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~e~---------k------------------------ 459 (745)
+++|++|++++.++ ++.++||+|+++|+.++....-. +
T Consensus 188 ~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~ 267 (542)
T PRK00013 188 VVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLR 267 (542)
T ss_pred EEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCc
Confidence 99999999998764 78899999999998765332100 0
Q ss_pred -----------------------------------------CCCCcccccccccEEEEEECCeeEEEEEecccc------
Q psy16434 460 -----------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAAE------ 492 (745)
Q Consensus 460 -----------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~------ 492 (745)
+++++++||+|+.+++.+ +++++|.++...
T Consensus 268 g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~r 344 (542)
T PRK00013 268 GTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK---DNTTIVDGAGDKEAIKAR 344 (542)
T ss_pred ccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec---CEEEEEeCCCCHHHHHHH
Confidence 235667799999998765 888999876541
Q ss_pred ----------------------------cceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-----------------
Q psy16434 493 ----------------------------SRIATLVIRGATENYMDDIERAVDDGVNTFKGITK----------------- 527 (745)
Q Consensus 493 ----------------------------~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~----------------- 527 (745)
++.+||++||+|+.+++|.+|+++||+++++++++
T Consensus 345 i~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g~VpGGGa~e~~~s~~ 424 (542)
T PRK00013 345 VAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVALLRAAPA 424 (542)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHH
Confidence 12788999999999999999999999999998876
Q ss_pred -----------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccc
Q psy16434 528 -----------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLT 584 (745)
Q Consensus 528 -----------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lV 584 (745)
.+|++|++|||+|+.+++++|++.| ..++|+|+.++ ++.|+...||+||+.|
T Consensus 425 L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~---~~~~G~d~~~g--~~~d~~~~gI~Dp~~v 499 (542)
T PRK00013 425 LEALKGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK---GKGYGYNAATG--EYVDMIEAGIIDPTKV 499 (542)
T ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCEeEeCCCC--ceeehhhccCeecHHH
Confidence 5789999999999999999999877 35789999999 9999999999999999
Q ss_pred hhhHhhhhhhcchhhccccccee
Q psy16434 585 KMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 585 kG~vL~~A~e~a~mil~IDn~kI 607 (745)
+..+++.|++.+.+++++|++..
T Consensus 500 k~~al~~A~~~a~~iL~id~iI~ 522 (542)
T PRK00013 500 TRSALQNAASVAGLLLTTEAVVA 522 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998754
No 28
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=8.4e-56 Score=507.69 Aligned_cols=352 Identities=21% Similarity=0.290 Sum_probs=312.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccCh----hhHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHP----AAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP----~akll~~~s~~qd~~~GDGt 261 (745)
++++..|++++.+++++++|||||+||+|||+++.|+++|||||+||+|+|+++|| +|+|++++|++||+++|||
T Consensus 9 ~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~GDG- 87 (542)
T PRK12849 9 EEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVAGDG- 87 (542)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCccCCC-
Confidence 68999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+|+||++||+++.+|+++|+||..|++||+.|++
T Consensus 88 -------------------------------------------TTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~ 124 (542)
T PRK12849 88 -------------------------------------------TTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVE 124 (542)
T ss_pred -------------------------------------------ccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCccc-c
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN-S 420 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~d-S 420 (745)
.+++.|++++.+. .+.+.|.++|+|+++ ++++|++|+++|+..++++ +. +.+. .|++.+| +
T Consensus 125 ~~~~~L~~~s~~~----~~~~~l~~va~ts~~-----~~~~l~~lv~~Av~~v~~~--g~-----i~i~--~g~~~~d~~ 186 (542)
T PRK12849 125 AVVEELKALARPV----SGSEEIAQVATISAN-----GDEEIGELIAEAMEKVGKD--GV-----ITVE--ESKTLETEL 186 (542)
T ss_pred HHHHHHHHhccCC----CCHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHhccC--Cc-----EeEE--eCCCcceeE
Confidence 9999999998763 356679999998875 4789999999999999754 33 3333 6888876 7
Q ss_pred eeEeeEEEeecccCC---------ceeeeCceEEEeccCCCcccccc---------C-----------------------
Q psy16434 421 EIVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATTET---------K----------------------- 459 (745)
Q Consensus 421 ~lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~e~---------k----------------------- 459 (745)
++++|++|++++.++ ++.++||+|+++++.++....-. +
T Consensus 187 ~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~ 266 (542)
T PRK12849 187 EVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKL 266 (542)
T ss_pred EEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhh
Confidence 999999999998754 78899999999999865332100 0
Q ss_pred ------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccc------
Q psy16434 460 ------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAA------ 491 (745)
Q Consensus 460 ------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l------ 491 (745)
+++++++||+|+.+++.+ ++++++.|+..
T Consensus 267 ~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~ 343 (542)
T PRK12849 267 RGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK---DNTTIVDGAGDKEAIEA 343 (542)
T ss_pred hccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee---eeEEEEeCCCCHHHHHH
Confidence 334457799999998755 88898987653
Q ss_pred ----------------------------ccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------
Q psy16434 492 ----------------------------ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------- 527 (745)
Q Consensus 492 ----------------------------~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------- 527 (745)
.++.+||++||+|+.+++|.+|+++||+++++++++
T Consensus 344 r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g~VpGGGa~e~~ls~ 423 (542)
T PRK12849 344 RVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLRAAK 423 (542)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCeecCCCHHHHHHHH
Confidence 135899999999999999999999999999998776
Q ss_pred ------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccccc
Q psy16434 528 ------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 528 ------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~l 583 (745)
.+|++|++|||+|+.+++++|++.| .++|+|+.++ ++.||...||+||..
T Consensus 424 ~L~~~~~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~----~~~G~d~~~g--~~~d~~~~GV~Dp~~ 497 (542)
T PRK12849 424 ALDELAGLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE----DGFGFNAATG--EYGDLIAAGIIDPVK 497 (542)
T ss_pred HHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC----CCcceeCCCC--ccccHHhccCccCHH
Confidence 5789999999999999999998865 3689999999 999999999999999
Q ss_pred chhhHhhhhhhcchhhcccccceee
Q psy16434 584 TKMWALKYATSAANTILQQTKAKIA 608 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kIl 608 (745)
++..+++.|++.+.|++++|++.+.
T Consensus 498 vk~~al~~A~e~A~~iL~id~iI~~ 522 (542)
T PRK12849 498 VTRSALQNAASVAGLLLTTEALVAD 522 (542)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 9999999999999999999987753
No 29
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6.2e-55 Score=501.67 Aligned_cols=352 Identities=20% Similarity=0.298 Sum_probs=309.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhcccc----ChhhHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE----HPAAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~----hP~akll~~~s~~qd~~~GDGt 261 (745)
+++++.|++|+..|+++++|||||+||+|||+++.|+++|||||+||+|+|++. ||+|+|++++|++||+++|||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e~GDG- 88 (545)
T PRK12852 10 GDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDLAGDG- 88 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCceecCC-
Confidence 589999999999999999999999999999999999999999999999999994 888999999999998888888
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+++||++||+++.+|+++|+||..|++||++|++
T Consensus 89 -------------------------------------------TTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~ 125 (545)
T PRK12852 89 -------------------------------------------TTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVA 125 (545)
T ss_pred -------------------------------------------cchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCc-ccc
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGL-FNS 420 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~-~dS 420 (745)
.+++.|++++.+. .+.++|.++|++++++ ++.|++|+++|+.+++++ +. |.+. .|++. .++
T Consensus 126 ~~l~~L~~~s~~v----~~~~~l~~va~~s~~~-----~~~l~~li~eA~~~vg~~--g~-----i~v~--~g~~~~~~~ 187 (545)
T PRK12852 126 AVVKDIEKRAKPV----ASSAEIAQVGTISANG-----DAAIGKMIAQAMQKVGNE--GV-----ITVE--ENKSLETEV 187 (545)
T ss_pred HHHHHHHHhcccC----CCHHHHHHHHhhhcCC-----hHHHHHHHHHHHHHhccC--Cc-----eeee--cCCCcceEE
Confidence 9999999998763 2345689999888865 588999999999999864 33 3333 27775 789
Q ss_pred eeEeeEEEeecccCC---------ceeeeCceEEEeccCCCcccccc---------C-----------------------
Q psy16434 421 EIVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATTET---------K----------------------- 459 (745)
Q Consensus 421 ~lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~e~---------k----------------------- 459 (745)
++++|+.|++++.++ +..++||+|+++++.++..+.-. +
T Consensus 188 ~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~ 267 (545)
T PRK12852 188 DIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRL 267 (545)
T ss_pred EEEEeEEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcc
Confidence 999999999999763 67899999999998755322100 0
Q ss_pred ------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccc------
Q psy16434 460 ------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAA------ 491 (745)
Q Consensus 460 ------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l------ 491 (745)
+++++++||+|+.+++.+ ++++++.|+..
T Consensus 268 ~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ 344 (545)
T PRK12852 268 RGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVNGAGKKADIEA 344 (545)
T ss_pred cccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEeCCCCHHHHHH
Confidence 445566799999998888 68888887642
Q ss_pred ----------------------------ccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------
Q psy16434 492 ----------------------------ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------- 527 (745)
Q Consensus 492 ----------------------------~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------- 527 (745)
+++.+||++||+|+.+++|.+|+++||+++++++++
T Consensus 345 ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpGGGa~e~~~s~ 424 (545)
T PRK12852 345 RVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKK 424 (545)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHH
Confidence 136789999999999999999999999999999876
Q ss_pred ------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccccc
Q psy16434 528 ------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 528 ------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~l 583 (745)
.+|++|++|||+|+.+++++|++.| ..++|||+.++ ++.|+...||+||+.
T Consensus 425 ~L~~~~~~~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~---~~~~G~d~~~g--~~~d~~~~GI~Dp~~ 499 (545)
T PRK12852 425 AVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENK---SETFGFDAQTE--EYVDMVAKGIIDPAK 499 (545)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCeeEeCcCC--CcccHHhCcCCcChH
Confidence 5789999999999999999998876 35789999999 999999999999999
Q ss_pred chhhHhhhhhhcchhhccccccee
Q psy16434 584 TKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kI 607 (745)
++..+++.|++.+.|++++|++..
T Consensus 500 vk~~al~~A~e~a~~iL~id~iI~ 523 (545)
T PRK12852 500 VVRTALQDAASVAGLLVTTEAMVA 523 (545)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhh
Confidence 999999999999999999998654
No 30
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6e-55 Score=501.11 Aligned_cols=353 Identities=20% Similarity=0.297 Sum_probs=309.7
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChh----hHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPA----AKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~----akll~~~s~~qd~~~GDGt 261 (745)
++++..|++||.+|+++++|||||+||+|||+++.|+++|||||+||+|+|+++||+ |+|++++|++||+++|||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e~GDG- 88 (544)
T PRK12850 10 TDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDLAGDG- 88 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcchhcCC-
Confidence 589999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+++||++||+++.+|+++|+||..|++||+.|++
T Consensus 89 -------------------------------------------TTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~ 125 (544)
T PRK12850 89 -------------------------------------------TTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVA 125 (544)
T ss_pred -------------------------------------------cchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccce
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~ 421 (745)
.++++|++++.+. .+.+.|.++|++++++ ++.|++++++|+.+++++ +.++++.+ +..| .+++
T Consensus 126 ~~~~~L~~~s~~v----~~~~~l~~va~~s~~~-----~~~l~~lv~eAv~~vg~~--g~i~v~~~---~~~g---~~~~ 188 (544)
T PRK12850 126 AVVDELKKIAKKV----TSSKEIAQVATISANG-----DESIGEMIAEAMDKVGKE--GVITVEEA---KTLG---TELD 188 (544)
T ss_pred HHHHHHHHhccCC----CCHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhccc--CceeeEEc---cccC---cceE
Confidence 9999999998763 2567799999888765 689999999999999864 44444332 2223 6889
Q ss_pred eEeeEEEeecccCC---------ceeeeCceEEEeccCCCcccccc---------C------------------------
Q psy16434 422 IVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATTET---------K------------------------ 459 (745)
Q Consensus 422 lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~e~---------k------------------------ 459 (745)
+++|++|++++.++ ++.++||+|+++|+.++..+.-. +
T Consensus 189 ~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~ 268 (544)
T PRK12850 189 VVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLR 268 (544)
T ss_pred EEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCc
Confidence 99999999998763 78899999999998765321100 0
Q ss_pred -----------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccc-------
Q psy16434 460 -----------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAA------- 491 (745)
Q Consensus 460 -----------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l------- 491 (745)
+++++++||+|+.+++.+ +++++|.|+..
T Consensus 269 ~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~r 345 (544)
T PRK12850 269 GGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIIDGAGDKKNIEAR 345 (544)
T ss_pred ccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEeCCCCHHHHHHH
Confidence 334556799999998877 78888887643
Q ss_pred ---------------------------ccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-----------------
Q psy16434 492 ---------------------------ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK----------------- 527 (745)
Q Consensus 492 ---------------------------~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~----------------- 527 (745)
+++.+||++||+|+.+++|.+|+++||+++++++++
T Consensus 346 i~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g~VpGGGa~e~~~s~~ 425 (544)
T PRK12850 346 VKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSA 425 (544)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHH
Confidence 134899999999999999999999999999999876
Q ss_pred -----------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccc
Q psy16434 528 -----------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLT 584 (745)
Q Consensus 528 -----------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lV 584 (745)
.+|++|++|||+|+.+++++|++.| .++|+|+.++ ++.|+...+|+||..|
T Consensus 426 L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~----~~~G~d~~~g--~~~d~~~~gI~Dp~~v 499 (544)
T PRK12850 426 LRGLKGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP----GNFGFNAQTG--EYGDMVEAGIIDPAKV 499 (544)
T ss_pred HHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCcceeCCCC--cccchhhccCcccHHH
Confidence 5789999999999999999998865 3689999999 9999999999999999
Q ss_pred hhhHhhhhhhcchhhcccccceee
Q psy16434 585 KMWALKYATSAANTILQQTKAKIA 608 (745)
Q Consensus 585 kG~vL~~A~e~a~mil~IDn~kIl 608 (745)
+..+++.|++.+.+++++|++.+.
T Consensus 500 k~~al~~A~~~a~~iL~id~iI~~ 523 (544)
T PRK12850 500 TRTALQDAASIAALLITTEAMVAE 523 (544)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhcc
Confidence 999999999999999999987653
No 31
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=9.9e-55 Score=497.20 Aligned_cols=350 Identities=23% Similarity=0.330 Sum_probs=311.6
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccCh----hhHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHP----AAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP----~akll~~~s~~qd~~~GDGt 261 (745)
.+++..|+++|..|+++++|||||+||+|||+++.|+++|||||+||+|+|+++|| +++|++++|++||+++|||
T Consensus 7 ~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~GDG- 85 (520)
T cd03344 7 EEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDG- 85 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhccccCCC-
Confidence 58999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+++||++||+++.+++++|+||..|++||+.|.+
T Consensus 86 -------------------------------------------TTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~ 122 (520)
T cd03344 86 -------------------------------------------TTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVE 122 (520)
T ss_pred -------------------------------------------cchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCccc-c
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN-S 420 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~d-S 420 (745)
.++++|++++.+. ++.+.|.++|+|++++ +++|++++++|+..++++ +. |.+ ..|++..| +
T Consensus 123 ~~~~~L~~~~~~i----~~~~~l~~va~ts~~~-----~~~l~~lv~~A~~~v~~~--~~-----i~v--~~g~~~~d~~ 184 (520)
T cd03344 123 AVVEELKKLSKPV----KTKEEIAQVATISANG-----DEEIGELIAEAMEKVGKD--GV-----ITV--EEGKTLETEL 184 (520)
T ss_pred HHHHHHHHhccCC----CCHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHhccC--Cc-----EEE--EeCCCcceeE
Confidence 9999999998773 2677899999999985 689999999999999754 22 444 57899988 6
Q ss_pred eeEeeEEEeecccCC-----c----eeeeCceEEEeccCCCcccccc---------C-----------------------
Q psy16434 421 EIVQGMVFKRSVEGD-----I----TKQTKAKIAVYTCPVDIATTET---------K----------------------- 459 (745)
Q Consensus 421 ~lv~G~~l~~~~~~~-----~----~~i~nakIlil~~~Le~~k~e~---------k----------------------- 459 (745)
++++|++|++++.++ | ++++||+|++++++|+....-. +
T Consensus 185 ~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i 264 (520)
T cd03344 185 EVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKL 264 (520)
T ss_pred EEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCC
Confidence 999999999998754 3 6799999999999975332200 0
Q ss_pred ------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEecccc-----
Q psy16434 460 ------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAAE----- 492 (745)
Q Consensus 460 ------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~----- 492 (745)
+++++++||+|+.+++.+ ++++++.++...
T Consensus 265 ~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ 341 (520)
T cd03344 265 RGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIGGAGDKAAIKA 341 (520)
T ss_pred ccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEeCCCCHHHHHH
Confidence 234456799999998877 788888876431
Q ss_pred -----------------------------cceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------
Q psy16434 493 -----------------------------SRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------- 527 (745)
Q Consensus 493 -----------------------------~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------- 527 (745)
++++||++||+|+.+++|.+|+++||+++++++++
T Consensus 342 ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g~VpGGGa~e~~~s~ 421 (520)
T cd03344 342 RIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRASP 421 (520)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcHHHHHHHH
Confidence 35899999999999999999999999999998776
Q ss_pred ------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccccc
Q psy16434 528 ------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 528 ------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~l 583 (745)
.+|++|++|||+|+.+++++|++.|. ++|+|+.++ ++.||...||+||..
T Consensus 422 ~L~~~~~~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~----~~G~d~~~g--~~~d~~~~gV~Dp~~ 495 (520)
T cd03344 422 ALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD----GFGYDAATG--EYVDMIEAGIIDPTK 495 (520)
T ss_pred HHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC----CEeEECCCC--cccchHhccCeecHH
Confidence 57899999999999999999998764 789999999 999999999999999
Q ss_pred chhhHhhhhhhcchhhcccccce
Q psy16434 584 TKMWALKYATSAANTILQQTKAK 606 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~k 606 (745)
++..+++.|++.+.+++++|...
T Consensus 496 vk~~~l~~A~~~a~~iL~id~~i 518 (520)
T cd03344 496 VVRSALQNAASVASLLLTTEALV 518 (520)
T ss_pred HHHHHHHHHHHHHHHHHhhheEE
Confidence 99999999999999999998654
No 32
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.3e-54 Score=498.01 Aligned_cols=353 Identities=20% Similarity=0.268 Sum_probs=311.8
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccCh----hhHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHP----AAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP----~akll~~~s~~qd~~~GDGt 261 (745)
++++..|++++..|+++++|||||+||+|||+++.|+++|||||+||+|+|+++|| +|+|++++|++||+++|||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDG- 88 (541)
T PRK12851 10 VEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDVAGDG- 88 (541)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHhhCCC-
Confidence 58999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+|+||++||+++.+|+++|+||..|++||+.|++
T Consensus 89 -------------------------------------------TTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~ 125 (541)
T PRK12851 89 -------------------------------------------TTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVA 125 (541)
T ss_pred -------------------------------------------ccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccce
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~ 421 (745)
.+++.|++++.+. .+.+.|.++|+++++ ++++|++|+++|+..++++ +. ++|.+.. ++..+++
T Consensus 126 ~~~~~L~~~s~~~----~~~~~l~~va~~s~~-----~~~~l~~lv~~Av~~vg~~--g~-----i~i~~~~-~~~~~~~ 188 (541)
T PRK12851 126 AVVEELKANARPV----TTNAEIAQVATISAN-----GDAEIGRLVAEAMEKVGNE--GV-----ITVEESK-TAETELE 188 (541)
T ss_pred HHHHHHHHhccCC----CCHHHHHHHHHHhcc-----ChHHHHHHHHHHHHHhccc--Cc-----eEEEEcc-CCCcceE
Confidence 9999999998763 256678999988763 4799999999999999754 32 5666655 5677899
Q ss_pred eEeeEEEeecccC---------CceeeeCceEEEeccCCCcccccc---------C------------------------
Q psy16434 422 IVQGMVFKRSVEG---------DITKQTKAKIAVYTCPVDIATTET---------K------------------------ 459 (745)
Q Consensus 422 lv~G~~l~~~~~~---------~~~~i~nakIlil~~~Le~~k~e~---------k------------------------ 459 (745)
+++|++|++++.+ +|++++||+|+++|++++....-. +
T Consensus 189 ~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~ 268 (541)
T PRK12851 189 VVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLR 268 (541)
T ss_pred EEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCc
Confidence 9999999999865 478899999999999875321100 0
Q ss_pred -----------------------------------------CCCCcccccccccEEEEEECCeeEEEEEecccc------
Q psy16434 460 -----------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAAE------ 492 (745)
Q Consensus 460 -----------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~------ 492 (745)
+++++++||+|+.+++.+ ++++++.|+...
T Consensus 269 g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~r 345 (541)
T PRK12851 269 GGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDGAGSKTEIEGR 345 (541)
T ss_pred CceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcCCCCHHHHHHH
Confidence 344556799999998887 888888876431
Q ss_pred ----------------------------cceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-----------------
Q psy16434 493 ----------------------------SRIATLVIRGATENYMDDIERAVDDGVNTFKGITK----------------- 527 (745)
Q Consensus 493 ----------------------------~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~----------------- 527 (745)
+..++|++||+|+.+++|.+|+++||+++++++++
T Consensus 346 i~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g~VpGGGa~e~~~s~~ 425 (541)
T PRK12851 346 VAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAVKA 425 (541)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCchHHHHHHHHH
Confidence 13778999999999999999999999999999876
Q ss_pred -----------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccc
Q psy16434 528 -----------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLT 584 (745)
Q Consensus 528 -----------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lV 584 (745)
.+|++|++|||+|+.+++++|++.| .++|+|+.++ ++.||...||+||+.+
T Consensus 426 L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~----~~~G~d~~~g--~~~d~~~~GIiDp~~v 499 (541)
T PRK12851 426 LDKLETANGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP----GGYGFNAATN--EYGDLYAQGVIDPVKV 499 (541)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCeeeeCCCC--CccchhhccCEecHHH
Confidence 5789999999999999999998875 3689999999 9999999999999999
Q ss_pred hhhHhhhhhhcchhhcccccceee
Q psy16434 585 KMWALKYATSAANTILQQTKAKIA 608 (745)
Q Consensus 585 kG~vL~~A~e~a~mil~IDn~kIl 608 (745)
+..+++.|++.+.|++++|++.+.
T Consensus 500 k~~al~~A~e~A~~iL~id~iI~~ 523 (541)
T PRK12851 500 VRTALQNAASVAGLLLTTEAMVAE 523 (541)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhc
Confidence 999999999999999999986553
No 33
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1.3e-54 Score=496.87 Aligned_cols=351 Identities=23% Similarity=0.315 Sum_probs=308.7
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccCh----hhHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHP----AAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP----~akll~~~s~~qd~~~GDGt 261 (745)
++++..|++|+.+++++++|||||+||+|||+++.|+++|||||+||+|+|++.|| +++|++++|++||+++|||
T Consensus 8 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDG- 86 (524)
T TIGR02348 8 EEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVAGDG- 86 (524)
T ss_pred HHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCceeCCC-
Confidence 58999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+++||++||+++.+++++|+||..|++||+.|++
T Consensus 87 -------------------------------------------TTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~ 123 (524)
T TIGR02348 87 -------------------------------------------TTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVE 123 (524)
T ss_pred -------------------------------------------cchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCc-ccc
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGL-FNS 420 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~-~dS 420 (745)
.+++.|++++.+. .+.+.|.++|+++++ ++++|++++++|+..++++ +. |.|.. |+.. .+|
T Consensus 124 ~~l~~L~~~s~~~----~~~~~l~~va~ts~~-----~~~~l~~lv~~A~~~v~~~--~~-----i~v~~--g~~~~~~s 185 (524)
T TIGR02348 124 AAVEELKKLSKPV----KGKKEIAQVATISAN-----NDEEIGSLIAEAMEKVGKD--GV-----ITVEE--SKSLETEL 185 (524)
T ss_pred HHHHHHHHhccCC----CCHHHHHHHHHHhcc-----ChHHHHHHHHHHHHHhCcC--Cc-----Eeeec--CCCccccE
Confidence 9999999998863 256789999998875 3789999999999999764 33 44443 6666 679
Q ss_pred eeEeeEEEeecccCC---------ceeeeCceEEEeccCCCcccccc---------C-----------------------
Q psy16434 421 EIVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATTET---------K----------------------- 459 (745)
Q Consensus 421 ~lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~e~---------k----------------------- 459 (745)
++++|++|++++.++ ++.++||+|++++++++....-. +
T Consensus 186 ~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~ 265 (524)
T TIGR02348 186 EVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKL 265 (524)
T ss_pred EEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhc
Confidence 999999999998753 78899999999999865332100 0
Q ss_pred ------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEeccc------
Q psy16434 460 ------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAA------ 491 (745)
Q Consensus 460 ------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l------ 491 (745)
+++++++||+|+.+++.+ ++++++.|+..
T Consensus 266 ~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~~~~ 342 (524)
T TIGR02348 266 RGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK---DNTTIVEGAGDKAAIKA 342 (524)
T ss_pred ccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee---cEEEEEcCCCCHHHHHH
Confidence 335667799999998776 78888887643
Q ss_pred ----------------------------ccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------
Q psy16434 492 ----------------------------ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------- 527 (745)
Q Consensus 492 ----------------------------~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------- 527 (745)
+++.+||++||+|+.+++|.+|+++||+++++++++
T Consensus 343 ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g~VpGGGa~e~~~s~ 422 (524)
T TIGR02348 343 RVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEGIVPGGGVALLRAAA 422 (524)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHH
Confidence 123688999999999999999999999999998876
Q ss_pred ------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccccc
Q psy16434 528 ------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 528 ------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~l 583 (745)
.+|++|++|||+|+.+++++|++. ++ ++|+|+.++ ++.||...||+||+.
T Consensus 423 ~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~--~~--~~G~d~~~g--~~~d~~~~gI~Dp~~ 496 (524)
T TIGR02348 423 ALEGLKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES--KG--NFGFNAATG--EYEDLVEAGIIDPTK 496 (524)
T ss_pred HHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc--CC--CeeEeCcCC--cccchhhccCEEcHH
Confidence 578999999999999999999865 33 389999999 999999999999999
Q ss_pred chhhHhhhhhhcchhhccccccee
Q psy16434 584 TKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kI 607 (745)
|+..+++.|++.+.+++++|++..
T Consensus 497 vk~~al~~A~~~a~~iL~id~ii~ 520 (524)
T TIGR02348 497 VTRSALQNAASIAGLLLTTEAVVA 520 (524)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhh
Confidence 999999999999999999998653
No 34
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=2.2e-54 Score=489.80 Aligned_cols=354 Identities=36% Similarity=0.581 Sum_probs=324.3
Q ss_pred HHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCccchhhhHhhhhhhhhHHH
Q psy16434 199 FADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNL 278 (745)
Q Consensus 199 la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDGt~~~~~~~~~~l~~~~~~ 278 (745)
|+++|++||||+||+|||++..|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDG------------------ 62 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDG------------------ 62 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSH------------------
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccc------------------
Confidence 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhcccccccccccC
Q psy16434 279 LRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDV 358 (745)
Q Consensus 279 ~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~~~l~~L~~~s~~~~~~~ 358 (745)
|||+++|+++||+++.+++++|+||..|++||+.|++.+++.|++++++...+
T Consensus 63 --------------------------tts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~- 115 (485)
T PF00118_consen 63 --------------------------TTSVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINND- 115 (485)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTST-
T ss_pred --------------------------cceeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhhhhhhhcccccc-
Confidence 99999999999999999999999999999999999999999999988773321
Q ss_pred cccccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccceeEeeEEEeecccCC--
Q psy16434 359 RNVENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGD-- 435 (745)
Q Consensus 359 ~~~~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~lv~G~~l~~~~~~~-- 435 (745)
.+.|++++++++++|+.+ +.+.|++++++|+ +..+. .+|++++++.++.|++++||++++|++|++++.+.
T Consensus 116 --~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~-~~~~~---~~~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~ 189 (485)
T PF00118_consen 116 --DESLLNIAKTSLNSKISSSWSDHLSKLIVDAI-KSIKS---NFDLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNM 189 (485)
T ss_dssp --SHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHH-HHHTT---THHGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTS
T ss_pred --chhhhhhhcccccccccccchhhhhhhHHHHH-Hhhcc---cccccchhhhhhccccccccccccceeeecccccccc
Confidence 178999999999999886 5799999999999 44432 27888899999999999999999999999999875
Q ss_pred ceeeeCceEEEeccCCCccccccC--------------------------------------------------------
Q psy16434 436 ITKQTKAKIAVYTCPVDIATTETK-------------------------------------------------------- 459 (745)
Q Consensus 436 ~~~i~nakIlil~~~Le~~k~e~k-------------------------------------------------------- 459 (745)
|++++||+|++++++|+..+. .+
T Consensus 190 ~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I 268 (485)
T PF00118_consen 190 PKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGI 268 (485)
T ss_dssp BSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTH
T ss_pred ccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhhh
Confidence 899999999999999999987 11
Q ss_pred --------------------------CCCCcccccccccEEEEEECCeeEEEEEe--cccccceeEEEEcCCchhhHHHH
Q psy16434 460 --------------------------TPPAASELGYADSVAVDELGDTAVVVFKL--EAAESRIATLVIRGATENYMDDI 511 (745)
Q Consensus 460 --------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g--~~l~~~a~TIIlrG~t~~IldE~ 511 (745)
+++.++.+|+|..+++.++|++++++|.+ +.. +..+||++||+++.+++|+
T Consensus 269 ~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~-~~~~Till~g~t~~~l~e~ 347 (485)
T PF00118_consen 269 LVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCLS-SKICTILLRGPTEFELEER 347 (485)
T ss_dssp EEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSESS-SSEEEEEEEESSHHHHHHH
T ss_pred hccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhcccccccccccccccccc-cCceEEEeccccchhHHHH
Confidence 55677789999999999999999999995 444 8899999999999999999
Q ss_pred HHHHHHHHHHHHHHHH------------------------------------------HHHHHHHhhccchhhHHHHHHH
Q psy16434 512 ERAVDDGVNTFKGITK------------------------------------------VFVKTLAENTGVKSNEVISKLY 549 (745)
Q Consensus 512 eral~DAL~vlk~~~~------------------------------------------~IPr~LaeNAGld~~~vlsKL~ 549 (745)
+++++||+++++.+++ .+|++|++|||+|+..+++++.
T Consensus 348 ~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~ 427 (485)
T PF00118_consen 348 ERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLK 427 (485)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhH
Confidence 9999999999999997 6899999999999999999999
Q ss_pred HHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccceee
Q psy16434 550 SAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIA 608 (745)
Q Consensus 550 ~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIl 608 (745)
..|+.+. ++|+|+.++ ++.+|...+++||+.++..+++.|++.+.+++++|++...
T Consensus 428 ~~h~~~~-~~g~d~~~~--~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~ 483 (485)
T PF00118_consen 428 SFHNNGN-NYGIDLDTG--EIVDMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMA 483 (485)
T ss_dssp HHHHSTT-TEEEETTTT--EEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred hhhcccc-ccCcCccCC--ceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9886655 899999999 9999999999999999999999999999999999987653
No 35
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=2.6e-54 Score=494.94 Aligned_cols=352 Identities=20% Similarity=0.261 Sum_probs=305.2
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhH----HHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAK----LIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~ak----ll~~~s~~qd~~~GDGt 261 (745)
++++...++||..|+++|+|||||+||+|||+++.|+++|||||+||||+|+++||+++ |+++++++|++++|||
T Consensus 9 ~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e~GDG- 87 (529)
T CHL00093 9 DNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDG- 87 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCceecCC-
Confidence 58999999999999999999999999999999999999999999999999999999985 7777888888788888
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+++||++||++|.+|+++|+||+.|++||++|++
T Consensus 88 -------------------------------------------TTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~ 124 (529)
T CHL00093 88 -------------------------------------------TTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQ 124 (529)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccce
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~ 421 (745)
.+++.|++++.+. .+.+.|.++|+++++ +++.|++|+++|+.+++++ +.++ +.. .+++..+++
T Consensus 125 ~~l~~L~~~s~~v----~d~~~L~~VA~ts~~-----~~~~l~~lv~eAv~~vg~~--g~i~-----~~~-g~~~~~~~~ 187 (529)
T CHL00093 125 YVVSQIAEYARPV----EDIQAITQVASISAG-----NDEEVGSMIADAIEKVGRE--GVIS-----LEE-GKSTVTELE 187 (529)
T ss_pred HHHHHHHHhCCCC----CCHHHHHHHHHHhcc-----ChHHHHHHHHHHHHHhccC--Ccee-----ecC-CCccceeeE
Confidence 9999999998773 256779999999887 4789999999999999864 3333 221 223456789
Q ss_pred eEeeEEEeecccCC-----ce----eeeCceEEEeccCCCccccccC---------------------------------
Q psy16434 422 IVQGMVFKRSVEGD-----IT----KQTKAKIAVYTCPVDIATTETK--------------------------------- 459 (745)
Q Consensus 422 lv~G~~l~~~~~~~-----~~----~i~nakIlil~~~Le~~k~e~k--------------------------------- 459 (745)
+++|+.|+++|.++ ++ +++||+|++++++|++.+.+..
T Consensus 188 ~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~ 267 (529)
T CHL00093 188 ITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKL 267 (529)
T ss_pred EEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhh
Confidence 99999999998764 43 5899999999999998743210
Q ss_pred ------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEe---------
Q psy16434 460 ------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKL--------- 488 (745)
Q Consensus 460 ------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g--------- 488 (745)
+++++++||+|+.+++.+ +++++|.+
T Consensus 268 ~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~~~~~~~i~~~ 344 (529)
T CHL00093 268 RGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIADGNEEQVKAR 344 (529)
T ss_pred cccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEecCcHHHHHHH
Confidence 344567799999998876 67788863
Q ss_pred cc------------------------cccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-----------------
Q psy16434 489 EA------------------------AESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK----------------- 527 (745)
Q Consensus 489 ~~------------------------l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~----------------- 527 (745)
+. +++..++|++||+|+.+++|.+|+++||+++++++++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~ 424 (529)
T CHL00093 345 CEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVHLSEN 424 (529)
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 11 1124778999999999999999999999999999876
Q ss_pred -------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccc
Q psy16434 528 -------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLY 582 (745)
Q Consensus 528 -------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~ 582 (745)
.+|++|++|||+|+..++++++.. ..++|||+.++ ++.||...||+||+
T Consensus 425 L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~----~~~~G~d~~~g--~~~d~~~~GI~Dp~ 498 (529)
T CHL00093 425 LKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ----DFEIGYNAANN--KFVNMYEAGIIDPA 498 (529)
T ss_pred HHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc----CCCEeEECCCC--cccchHhccCEEcH
Confidence 578999999999999999999753 34799999999 99999999999999
Q ss_pred cchhhHhhhhhhcchhhccccccee
Q psy16434 583 LTKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 583 lVkG~vL~~A~e~a~mil~IDn~kI 607 (745)
.|+..+++.|++.+++++++|.+..
T Consensus 499 ~vk~~al~~A~e~a~~iL~id~ii~ 523 (529)
T CHL00093 499 KVTRSALQNAASIASMILTTECIIV 523 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765
No 36
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.1e-54 Score=502.09 Aligned_cols=354 Identities=21% Similarity=0.290 Sum_probs=311.0
Q ss_pred HHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChh----hHHHHHHHhhhhchhcCccc
Q psy16434 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPA----AKLIILGSQMQEEEMGDGTN 262 (745)
Q Consensus 187 ~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~----akll~~~s~~qd~~~GDGt~ 262 (745)
++|...+.+|..|+++|+|||||+||+|||+++.|+++|||||+||+|+|+++||+ |+|++++|++||+++|||
T Consensus 66 ~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~evGDG-- 143 (600)
T PLN03167 66 SAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDG-- 143 (600)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhhhhhCCC--
Confidence 79999999999999999999999999999999999999999999999999999995 999999999999999999
Q ss_pred hhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHH
Q psy16434 263 FVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAK 342 (745)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~~ 342 (745)
|||+++||++||+++.++++.|+||..|++||++|.+.
T Consensus 144 ------------------------------------------TTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~ 181 (600)
T PLN03167 144 ------------------------------------------TTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKA 181 (600)
T ss_pred ------------------------------------------ccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999
Q ss_pred HHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccc-e
Q psy16434 343 TLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNS-E 421 (745)
Q Consensus 343 ~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS-~ 421 (745)
+++.|++++.+. .+ +.|.++|.+++++ ++.|++|+++|+.+++++ +. |.+ ..|++.+|+ +
T Consensus 182 ~~~~L~~~s~~v----~d-~~L~~vA~tS~~~-----~~~i~~liaeAv~~Vg~~--g~-----i~v--~~g~s~~dsl~ 242 (600)
T PLN03167 182 LVKELKKMSKEV----ED-SELADVAAVSAGN-----NYEVGNMIAEAMSKVGRK--GV-----VTL--EEGKSAENNLY 242 (600)
T ss_pred HHHHHHHhcccC----CH-HHHHHHHHHhccC-----cHHHHHHHHHHHHHhccC--Cc-----EEe--ccCCCccceeE
Confidence 999999988763 23 4699999999875 578999999999999864 33 322 268899987 9
Q ss_pred eEeeEEEeecccCC---------ceeeeCceEEEeccCCCccccccC---------------------------------
Q psy16434 422 IVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATTETK--------------------------------- 459 (745)
Q Consensus 422 lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~e~k--------------------------------- 459 (745)
+++|+.|+++|.++ +++++||+||+++++++..+.-.+
T Consensus 243 ~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~ 322 (600)
T PLN03167 243 VVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLR 322 (600)
T ss_pred EEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhcc
Confidence 99999999998754 889999999999998775542100
Q ss_pred -----------------------------------------CCCCcccccccccEEEEE-----ECC--------eeEEE
Q psy16434 460 -----------------------------------------TPPAASELGYADSVAVDE-----LGD--------TAVVV 485 (745)
Q Consensus 460 -----------------------------------------~~p~a~~LG~a~~vq~~e-----iGd--------tsvti 485 (745)
+++.+++||+|+++++.+ +|+ +++++
T Consensus 323 g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~ 402 (600)
T PLN03167 323 GSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQ 402 (600)
T ss_pred ccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHH
Confidence 344567899999999988 776 46777
Q ss_pred EEecc------------------cccceeEEE-EcCCchhhHHHHHHHHHHHHHHHHHHHH-------------------
Q psy16434 486 FKLEA------------------AESRIATLV-IRGATENYMDDIERAVDDGVNTFKGITK------------------- 527 (745)
Q Consensus 486 ~~g~~------------------l~~~a~TII-lrG~t~~IldE~eral~DAL~vlk~~~~------------------- 527 (745)
|.++. + +++++++ +||+|+.+++|.+|+++||+++++++++
T Consensus 403 i~~~~~~~~~~~~~~~l~~Ri~~l-~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~ 481 (600)
T PLN03167 403 IKNLIEAAEQDYEKEKLNERIAKL-SGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVD 481 (600)
T ss_pred HHhhhhccCCHHHHHHHHHHHhhc-CCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 76643 2 3356665 9999999999999999999999999887
Q ss_pred -----------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccc
Q psy16434 528 -----------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLT 584 (745)
Q Consensus 528 -----------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lV 584 (745)
.+|++||+|||+|+.+++++|+.. +..++|||+.++ ++.||...||+||+.|
T Consensus 482 ~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~---~~~~~G~d~~~g--~~~dm~~~GI~Dp~~V 556 (600)
T PLN03167 482 AIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSN---DNPKFGYNAATG--KYEDLMAAGIIDPTKV 556 (600)
T ss_pred HHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhc---CCCCEeEeCCCC--cCcchHhccCeecHHH
Confidence 346999999999999999999743 345799999999 9999999999999999
Q ss_pred hhhHhhhhhhcchhhcccccceeee
Q psy16434 585 KMWALKYATSAANTILQQTKAKIAV 609 (745)
Q Consensus 585 kG~vL~~A~e~a~mil~IDn~kIll 609 (745)
+..+++.|++.+.+++++|.+.+..
T Consensus 557 k~~al~~A~~~A~~iL~iD~iI~~~ 581 (600)
T PLN03167 557 VRCCLEHAASVAKTFLTSDCVVVEI 581 (600)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999887754
No 37
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.7e-53 Score=489.11 Aligned_cols=352 Identities=18% Similarity=0.258 Sum_probs=308.9
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhcccc----ChhhHHHHHHHhhhhchhcCcc
Q psy16434 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE----HPAAKLIILGSQMQEEEMGDGT 261 (745)
Q Consensus 186 ~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~----hP~akll~~~s~~qd~~~GDGt 261 (745)
++++..|++|+..|+++|+|||||+||+|||+++.|+++|||||+||+|+|+++ ||.++|++++|++||+++|||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e~GDG- 88 (546)
T PRK14104 10 VDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDG- 88 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcccccCc-
Confidence 589999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred chhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q psy16434 262 NFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341 (745)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~ 341 (745)
|||+|+||++||+++.++++.|+||+.|++||++|++
T Consensus 89 -------------------------------------------TTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~ 125 (546)
T PRK14104 89 -------------------------------------------TTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVE 125 (546)
T ss_pred -------------------------------------------ccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCc-ccc
Q psy16434 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGL-FNS 420 (745)
Q Consensus 342 ~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~-~dS 420 (745)
.+++.|++++.+. + +.+.|.++|++++++| +.|++++++|+.+++++ +. |.+..+ ++. .++
T Consensus 126 ~~~~~L~~~a~~v--~--~~~~l~~va~~s~~~d-----~~i~~lv~~Av~~vg~~--g~-----i~v~~~--~~~~~~~ 187 (546)
T PRK14104 126 AVVADLVKNSKKV--T--SNDEIAQVGTISANGD-----AEIGKFLADAMKKVGNE--GV-----ITVEEA--KSLETEL 187 (546)
T ss_pred HHHHHHHHhcccC--C--CHHHHHHHHHHHhcCc-----hHHHHHHHHHHHHhccC--Cc-----eeeEec--ccccceE
Confidence 9999999998773 2 3356899999988764 77999999999999864 44 444332 345 589
Q ss_pred eeEeeEEEeecccCC---------ceeeeCceEEEeccCCCcccccc---------C-----------------------
Q psy16434 421 EIVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATTET---------K----------------------- 459 (745)
Q Consensus 421 ~lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~e~---------k----------------------- 459 (745)
++++|+.|++++.++ +.+++||+|++++..++....-. +
T Consensus 188 ~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~ 267 (546)
T PRK14104 188 DVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRL 267 (546)
T ss_pred EEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcc
Confidence 999999999999875 56788999999996654322100 0
Q ss_pred ------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEecccc-----
Q psy16434 460 ------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAAE----- 492 (745)
Q Consensus 460 ------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~----- 492 (745)
+++++.+||+|.+++ +|+++++++.|+...
T Consensus 268 ~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~---~~~~~~~~i~g~~~~~~i~~ 344 (546)
T PRK14104 268 RGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVM---IDKENTTIVNGAGKKADIEA 344 (546)
T ss_pred cceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEE---EcCCEEEEEeCCCCHHHHHH
Confidence 455667899999876 477899999887541
Q ss_pred -----------------------------cceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH----------------
Q psy16434 493 -----------------------------SRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------- 527 (745)
Q Consensus 493 -----------------------------~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~---------------- 527 (745)
++.+||++||+|+.+++|.+|+++||+++++++++
T Consensus 345 ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g~VpGGGa~e~~~s~ 424 (546)
T PRK14104 345 RVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASE 424 (546)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcCcCchHHHHHHHH
Confidence 37899999999999999999999999999998776
Q ss_pred ------------------------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccccc
Q psy16434 528 ------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 528 ------------------------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~l 583 (745)
.+|++|++|||+|+.+++++|+..| +.++|+|+.++ ++.|+...||+||+.
T Consensus 425 ~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~---~~~~G~d~~~g--~~~d~~~~GI~Dp~~ 499 (546)
T PRK14104 425 QLKGIKTKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKE---QYSYGFDSQTG--EYGNLVSKGIIDPTK 499 (546)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC---CCcEeEeCCCC--ceeehHhcCCEEcHH
Confidence 5789999999999999999998653 34689999999 999999999999999
Q ss_pred chhhHhhhhhhcchhhccccccee
Q psy16434 584 TKMWALKYATSAANTILQQTKAKI 607 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kI 607 (745)
|+..+++.|++.+.+++++|++..
T Consensus 500 vk~~al~~A~~~a~~iL~id~~I~ 523 (546)
T PRK14104 500 VVRTAIQNAASVAALLITTEAMVA 523 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998773
No 38
>KOG0360|consensus
Probab=100.00 E-value=6.7e-53 Score=453.11 Aligned_cols=379 Identities=31% Similarity=0.477 Sum_probs=342.3
Q ss_pred ccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcC
Q psy16434 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGD 259 (745)
Q Consensus 180 ~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GD 259 (745)
+..+| +..|..|..|+.+++++++|||||-|+|||+++..|++++||||+|||+.|.++||++|++++.++.||+++||
T Consensus 13 e~~sg-~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgD 91 (545)
T KOG0360|consen 13 ERLSG-ERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGD 91 (545)
T ss_pred Ccccc-hhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccC
Confidence 35566 57888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q psy16434 260 GTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLA 339 (745)
Q Consensus 260 Gt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a 339 (745)
| ||+|+++|++||++|.+|+..++||+.|++||+.|
T Consensus 92 g--------------------------------------------ttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~a 127 (545)
T KOG0360|consen 92 G--------------------------------------------TTSVVIIAAELLKNADELVKTKIHPTRIISGYRLA 127 (545)
T ss_pred C--------------------------------------------ceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHH
Confidence 9 99999999999999999999999999999999999
Q ss_pred HHHHHHhccc-ccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCC---CCCCCCccceEEEEccC
Q psy16434 340 LAKTLEILPT-LTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPD---GSSSFNVDNVRITKILG 414 (745)
Q Consensus 340 ~~~~l~~L~~-~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~---~~~~~dl~~I~I~ki~G 414 (745)
...+++++.+ ++.+ .+...++.|.++++|+++||+++. .++|++++++|++.+.-- ......++.++|.|-.|
T Consensus 128 c~e~~k~i~~~~~~~--vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG 205 (545)
T KOG0360|consen 128 CIEAVKYITEGLSKP--VDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHG 205 (545)
T ss_pred HHHHHHHhhccceee--hhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCC
Confidence 9999999976 4443 445678899999999999999986 699999999999876421 22345678899999999
Q ss_pred CCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCccccccC---------------------------------
Q psy16434 415 SGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDIATTETK--------------------------------- 459 (745)
Q Consensus 415 gs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~~k~e~k--------------------------------- 459 (745)
++..+|.++.|+.++....+ ||+++.|+||+++++.|.-.+....
T Consensus 206 ~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~g 285 (545)
T KOG0360|consen 206 KSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATG 285 (545)
T ss_pred ccchhheeecceeeeccHhhhccccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcC
Confidence 99999999999999998865 5999999999999998876554321
Q ss_pred -------------------------------------------------------CCCCcccccccccEEEEEECCeeEE
Q psy16434 460 -------------------------------------------------------TPPAASELGYADSVAVDELGDTAVV 484 (745)
Q Consensus 460 -------------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvt 484 (745)
+...+..+|.|+.+.+.++||+.++
T Consensus 286 anvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~i 365 (545)
T KOG0360|consen 286 ANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELI 365 (545)
T ss_pred CcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeE
Confidence 5678889999999999999999999
Q ss_pred EEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH-------------------------------------
Q psy16434 485 VFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------- 527 (745)
Q Consensus 485 i~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------- 527 (745)
++.|.+- .++.|++||+++..++|++|+++||++++|..++
T Consensus 366 likg~ka--~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaef 443 (545)
T KOG0360|consen 366 LIKGTKA--TSASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEF 443 (545)
T ss_pred EeccCcc--ceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHH
Confidence 9999874 4899999999999999999999999999999886
Q ss_pred -----HHHHHHHhhccchhhHHHHHHHHHhhc--------CCccceeeecCCCcceeecccccccccccchhhHhhhhhh
Q psy16434 528 -----VFVKTLAENTGVKSNEVISKLYSAHNE--------GKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATS 594 (745)
Q Consensus 528 -----~IPr~LaeNAGld~~~vlsKL~~~h~~--------g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e 594 (745)
+||++|+-||+.|+++++++++..|+. +..++|.|+.+| ++.+....++.+|.+++-..++.+++
T Consensus 444 a~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng--~~~dn~~~g~~ep~~~kvksLk~ate 521 (545)
T KOG0360|consen 444 AAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLING--KIRDNKSAGSFEPPIVKVKSLKFATE 521 (545)
T ss_pred HHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhCcccccc--EeecceeeeeeccceeehhhhHHHHH
Confidence 689999999999999999999988753 346789999999 99999999999999999999999999
Q ss_pred cchhhcccccceeee
Q psy16434 595 AANTILQQTKAKIAV 609 (745)
Q Consensus 595 ~a~mil~IDn~kIll 609 (745)
++..+++||+...+.
T Consensus 522 aaitiLriD~li~l~ 536 (545)
T KOG0360|consen 522 AAITILRIDDLIKLL 536 (545)
T ss_pred hhhhhcchhhhhhcC
Confidence 999999999877654
No 39
>KOG0364|consensus
Probab=100.00 E-value=1.4e-52 Score=447.06 Aligned_cols=387 Identities=26% Similarity=0.444 Sum_probs=357.5
Q ss_pred ceeecccccccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHH
Q psy16434 171 PAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGS 250 (745)
Q Consensus 171 ~~~~~~~~~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s 250 (745)
|.-.+..+...++|. .+...|++++.+++|.++|+|||+.|.||+.++.|.+..||||..||++|++.||+|+-+.+++
T Consensus 4 pv~~~~~~~~re~g~-kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmiel~ 82 (527)
T KOG0364|consen 4 PVLVLSKNTKRESGR-KVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELS 82 (527)
T ss_pred ceeecccccCcCccc-cccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhhhh
Confidence 444556677788884 7889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHH
Q psy16434 251 QMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPS 330 (745)
Q Consensus 251 ~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~ 330 (745)
..||+++||| ||||++||+|+|.++.-++++|+||+
T Consensus 83 rtqdeevgdg--------------------------------------------ttsvi~lagE~L~~~~~~l~~~~Hp~ 118 (527)
T KOG0364|consen 83 RTQDEEVGDG--------------------------------------------TTSVIILAGEMLNVAEPFLEEGIHPT 118 (527)
T ss_pred hcccccccCC--------------------------------------------ceeeeeehHHHhhhcchhhhcCcchH
Confidence 9999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCCCCCCCCc-cceE
Q psy16434 331 EIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPDGSSSFNV-DNVR 408 (745)
Q Consensus 331 ~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~~~~~~dl-~~I~ 408 (745)
.|+++|.+|+..+++.+++++.+ +|.++...++++.+++..+|+.+ |.+..++|..+|+.+|+.+.+..+|+ .+.+
T Consensus 119 ~i~ka~~~aled~~~~~~~~~~~--~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~k 196 (527)
T KOG0364|consen 119 VIIKAYIKALEDNIRALDKISIP--VDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAK 196 (527)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc--CCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhcc
Confidence 99999999999999999988876 55678888999999999999998 57999999999999998774445887 5899
Q ss_pred EEEccCCCcccceeEeeEEEeecccCC--ceeeeCceEEEeccCCCccccccC---------------------------
Q psy16434 409 ITKILGSGLFNSEIVQGMVFKRSVEGD--ITKQTKAKIAVYTCPVDIATTETK--------------------------- 459 (745)
Q Consensus 409 I~ki~Ggs~~dS~lv~G~~l~~~~~~~--~~~i~nakIlil~~~Le~~k~e~k--------------------------- 459 (745)
++|++||.+.+|++++|+.+++...|+ .+.++||+|.+++|+|+|.|-+..
T Consensus 197 veKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~ 276 (527)
T KOG0364|consen 197 VEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCE 276 (527)
T ss_pred ccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHH
Confidence 999999999999999999999999886 778999999999999999987632
Q ss_pred -------------------------------------------------------CCCCccccc-ccccEEEEEECCeeE
Q psy16434 460 -------------------------------------------------------TPPAASELG-YADSVAVDELGDTAV 483 (745)
Q Consensus 460 -------------------------------------------------------~~p~a~~LG-~a~~vq~~eiGdtsv 483 (745)
+++.+++.| .|+.+++.++||..|
T Consensus 277 ~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf 356 (527)
T KOG0364|consen 277 VIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYF 356 (527)
T ss_pred HHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccchhhhhcCceeccChhhCchhccCcccceeeeeccCchhh
Confidence 667778888 477999999999999
Q ss_pred EEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------
Q psy16434 484 VVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------ 527 (745)
Q Consensus 484 ti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------ 527 (745)
++|..|+. +++|||++||++..|++|.+|.+.||+.+.++.+.
T Consensus 357 ~f~~~Ck~-pkaCtillrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~A 435 (527)
T KOG0364|consen 357 TFFTDCKE-PKACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGA 435 (527)
T ss_pred hhhhhcCC-CcceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhccchhh
Confidence 99999998 99999999999999999999999999999998774
Q ss_pred ------HHHHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcc
Q psy16434 528 ------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601 (745)
Q Consensus 528 ------~IPr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~ 601 (745)
.+||+|++|+|.++..+++.++..|+.|....|+|..++ .+.||...++|+|+.+|-...+.+.+.++++++
T Consensus 436 va~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg--~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLR 513 (527)
T KOG0364|consen 436 VAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETG--VIVDMVELGIWEPEAVKLQTGKTAVESACLLLR 513 (527)
T ss_pred hhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCcee--eEeeeeeccccchhhhhhhhhhHHHHHHHHHHh
Confidence 579999999999999999999999999988889998888 999999999999999999999999999999999
Q ss_pred ccccee
Q psy16434 602 QTKAKI 607 (745)
Q Consensus 602 IDn~kI 607 (745)
+|++.-
T Consensus 514 IddIvs 519 (527)
T KOG0364|consen 514 IDDIVS 519 (527)
T ss_pred hhceee
Confidence 998643
No 40
>KOG0359|consensus
Probab=100.00 E-value=4.2e-48 Score=412.30 Aligned_cols=364 Identities=25% Similarity=0.391 Sum_probs=339.2
Q ss_pred HHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHHHHhhhhchhcCccchhhh
Q psy16434 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVII 266 (745)
Q Consensus 187 ~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~~s~~qd~~~GDGt~~~~~ 266 (745)
.+..-|++++..+.+.+++.+||+|..||+++..|++.+|+||.+.+++|++.||.+-|+..++.+||+..|||
T Consensus 17 aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDG------ 90 (520)
T KOG0359|consen 17 AALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDG------ 90 (520)
T ss_pred cceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCC------
Confidence 45566899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHh
Q psy16434 267 FAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEI 346 (745)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~g~~~a~~~~l~~ 346 (745)
||++|+|+|||+++|..+|..|+||..|.+||+.|.+.++++
T Consensus 91 --------------------------------------ttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~ 132 (520)
T KOG0359|consen 91 --------------------------------------TTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEF 132 (520)
T ss_pred --------------------------------------cceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999
Q ss_pred cccccccccccCcccccccceeeeccccccCCC-hhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccceeEee
Q psy16434 347 LPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN-EDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQG 425 (745)
Q Consensus 347 L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~-~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~lv~G 425 (745)
|++.+.+ .+++.|..+++|++++|.... .+.+++++++|++.+. .+.+.+|+.+++|.++.-.+.+|+.+++|
T Consensus 133 L~k~~~~-----~~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~-~~~~~idl~mveim~mq~~s~~dT~~v~g 206 (520)
T KOG0359|consen 133 LEKVSRE-----VDRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIR-RQEEPIDLFMVEIMEMQHKSLHDTSLVQG 206 (520)
T ss_pred hhccccc-----hhHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeec-cCCCCcchhHHHhhhhccCchhhhHHhhh
Confidence 9976655 468899999999999999764 6999999999999988 33467899999999999999999999999
Q ss_pred EEEeecccCC--ceeeeCceEEEeccCCCccccccC--------------------------------------------
Q psy16434 426 MVFKRSVEGD--ITKQTKAKIAVYTCPVDIATTETK-------------------------------------------- 459 (745)
Q Consensus 426 ~~l~~~~~~~--~~~i~nakIlil~~~Le~~k~e~k-------------------------------------------- 459 (745)
.+++++..|+ |++.+|++||++|.+|||.|++.+
T Consensus 207 lvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinq 286 (520)
T KOG0359|consen 207 LVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQ 286 (520)
T ss_pred hhccCCCCCcccccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecc
Confidence 9999999995 999999999999999999999854
Q ss_pred ------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEecccccceeE
Q psy16434 460 ------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIAT 497 (745)
Q Consensus 460 ------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~~l~~~a~T 497 (745)
++++++.||+|+.+++..+|+++||+++++.. ++++|
T Consensus 287 kGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~-p~S~T 365 (520)
T KOG0359|consen 287 KGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNN-PSSVT 365 (520)
T ss_pred cCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceecccccCChhhccccceeEEeeccceeeEeeecCCC-CcceE
Confidence 88999999999999999999999999999998 99999
Q ss_pred EEEcCCchhhHHHHHHHHHHHHHHHHHHHH------------------------------------------HHHHHHHh
Q psy16434 498 LVIRGATENYMDDIERAVDDGVNTFKGITK------------------------------------------VFVKTLAE 535 (745)
Q Consensus 498 IIlrG~t~~IldE~eral~DAL~vlk~~~~------------------------------------------~IPr~Lae 535 (745)
|+++|++++.+..++.+++|++.++++.++ .+|++|++
T Consensus 366 iLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~ 445 (520)
T KOG0359|consen 366 ILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAK 445 (520)
T ss_pred EEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHH
Confidence 999999999999999999999999999887 68999999
Q ss_pred hccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccc
Q psy16434 536 NTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKA 605 (745)
Q Consensus 536 NAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~ 605 (745)
|+|+|..+.+.+|.++|... ..|+|+.+| .-++....|+||.+.|+..++..++-.++.++-+|.+
T Consensus 446 nsg~D~qe~l~~l~~e~~~~--~~g~dl~~g--~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi 511 (520)
T KOG0359|consen 446 NSGLDEQETLVSLKKEHEVT--LRGLDLFRG--EECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEI 511 (520)
T ss_pred hcCCchHHHHHHHHHhhhhh--hcccccccC--CccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 99999999999999988765 459999999 8888888899999999999999888888877777754
No 41
>KOG0357|consensus
Probab=100.00 E-value=3.8e-37 Score=320.55 Aligned_cols=331 Identities=26% Similarity=0.395 Sum_probs=262.1
Q ss_pred ceeecccc--cccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChhhHHHHH
Q psy16434 171 PAAIFQYY--DKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIIL 248 (745)
Q Consensus 171 ~~~~~~~~--~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~akll~~ 248 (745)
|..++.+. .....|. ++.++|+.+..+++.+++|||||+|++|+++.+.|++++|||| .|+++++|+.
T Consensus 11 ~~iiLrDQd~~~Ri~G~-ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLmv~ 80 (400)
T KOG0357|consen 11 PFIILRDQERKDRLFGL-DAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLIVI 80 (400)
T ss_pred ceEEeeeccCCchhhHH-HHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHHHH
Confidence 55545433 3344574 8999999999999999999999999999999999999999999 7899999999
Q ss_pred HHhhhhchhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCC
Q psy16434 249 GSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLT 328 (745)
Q Consensus 249 ~s~~qd~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gih 328 (745)
.+.+||.+.||| ||.+++|++.+++++.+++..|+|
T Consensus 81 LS~sqd~eIgdG--------------------------------------------tTgVvvLa~alleqa~~li~~~ih 116 (400)
T KOG0357|consen 81 LSKSQDDEIGDG--------------------------------------------TTGVVVLAGALLEQAHELIDRGIH 116 (400)
T ss_pred hcccchhhhccC--------------------------------------------CcccEEecccchHhHHhhcccccc
Confidence 999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCC---CCCCCCcc
Q psy16434 329 PSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPD---GSSSFNVD 405 (745)
Q Consensus 329 P~~I~~g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~---~~~~~dl~ 405 (745)
|..|..||..+.+.+++.|++++.+.. |.+++.+ ++..+.+ +..-||-+
T Consensus 117 piki~~g~e~~~~~av~~l~~i~~~~e---------------------------f~emi~~-vK~~ga~l~icqwgfdde 168 (400)
T KOG0357|consen 117 PIKIAQGYEKAKVVAVEHLDEISDPFE---------------------------FEEMIQQ-IKETGANLAICQWGFDDE 168 (400)
T ss_pred hhHHHHhhhhHHHhhhhhhhhhccccc---------------------------HHHHHHH-HHhhCCcEEEEecccCch
Confidence 999999999999999999998765521 2222222 1222221 00001100
Q ss_pred --ceEEEEccCCCcccceeEeeEEEeecccCCceeeeCceEEEeccC-CCccccccCCCCCcccccccccEEEEEECC--
Q psy16434 406 --NVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCP-VDIATTETKTPPAASELGYADSVAVDELGD-- 480 (745)
Q Consensus 406 --~I~I~ki~Ggs~~dS~lv~G~~l~~~~~~~~~~i~nakIlil~~~-Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd-- 480 (745)
.. ..-+.+.-.+||-|--++ -|+|.... +- + -.++++++.||.|+.+++..+|.
T Consensus 169 anhl----l~~n~lpavrwVGGpEiE-------------liAiaT~grIV-p---rF~eL~~~kLG~aglVrE~sfgttk 227 (400)
T KOG0357|consen 169 ANHL----LLQNNLPAVRWVGGPEIE-------------LIAIATGGRIV-P---RFSELTAEKLGFAGLVREISFGTTK 227 (400)
T ss_pred hhhH----HhhcCCCceeecCCcceE-------------EEEeecCCeee-c---cHhhhCHhhccccceEEEEeccccc
Confidence 00 011122223333332111 11111110 00 0 01567888999999999999997
Q ss_pred eeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH---------------------------------
Q psy16434 481 TAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK--------------------------------- 527 (745)
Q Consensus 481 tsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~--------------------------------- 527 (745)
++..+++.|++ ++++||.+||.+..|++|.+|++|||||+++++++
T Consensus 228 dkmlviEqc~n-skaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya 306 (400)
T KOG0357|consen 228 DKMLVIEQCKN-SKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYA 306 (400)
T ss_pred ceEEEEEecCC-CceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHH
Confidence 89999999998 99999999999999999999999999999999987
Q ss_pred ---------HHHHHHHhhccchhhHHHHHHHHHhh-cCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcch
Q psy16434 528 ---------VFVKTLAENTGVKSNEVISKLYSAHN-EGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAAN 597 (745)
Q Consensus 528 ---------~IPr~LaeNAGld~~~vlsKL~~~h~-~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~ 597 (745)
+||..|++|+|++|.+.++++++.+- .+++.+|+|.... ..-||....++|++.-|..-+..|+....
T Consensus 307 ~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~lGidcl~~--G~nDMk~~~vie~l~~KkqQi~laTQ~vr 384 (400)
T KOG0357|consen 307 FRAFADALESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHK--GTNDMKEQHVIETLIGKKQQISLATQMVR 384 (400)
T ss_pred HHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcccCcchhcc--CchhhhhhccHHHhhhhHHHHHHHHHHHH
Confidence 68999999999999999999988654 3567899998876 77899999999999999999999999999
Q ss_pred hhccccccee
Q psy16434 598 TILQQTKAKI 607 (745)
Q Consensus 598 mil~IDn~kI 607 (745)
|+++|||+++
T Consensus 385 MiLKiddv~~ 394 (400)
T KOG0357|consen 385 MILKIDDVRK 394 (400)
T ss_pred Hhhhccceec
Confidence 9999999876
No 42
>KOG0356|consensus
Probab=100.00 E-value=6.9e-35 Score=320.64 Aligned_cols=351 Identities=22% Similarity=0.304 Sum_probs=303.7
Q ss_pred cccccChHHHHHHHHHHHHHHHhhccccccccccceeeecCCCCeEEecCHHHHHhhccccChh----hHHHHHHHhhhh
Q psy16434 179 DKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPA----AKLIILGSQMQE 254 (745)
Q Consensus 179 ~~~~~g~~~a~~~ni~~~~~la~~v~tsLGP~G~~KmIv~~~g~i~ITnDG~tIlk~l~~~hP~----akll~~~s~~qd 254 (745)
.+-.+| .+++...++++..|++++.+|+||+||+++|-..+|.|.|||||.|+.+++.+.++. |+++.+++.+.+
T Consensus 17 k~i~fg-~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN 95 (550)
T KOG0356|consen 17 KDIKFG-KDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTN 95 (550)
T ss_pred cccccC-HHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhcc
Confidence 344566 469999999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred chhcCccchhhhHhhhhhhhhHHHHHhhhchhhHHHhhhccccccccCCCCchhHHHHHHHHHHHHHhhhCCCCHHHHHH
Q psy16434 255 EEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVN 334 (745)
Q Consensus 255 ~~~GDGt~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~~~~~q~~~~GDgTTsvVvLa~eLL~~a~~li~~gihP~~I~~ 334 (745)
+..||| ||++++|+.++..++.+-+.+|.+|..|.+
T Consensus 96 ~~agdG--------------------------------------------tttatvlar~i~~eg~~~v~~G~npv~irr 131 (550)
T KOG0356|consen 96 EEAGDG--------------------------------------------TTTATVLARAIAKEGFEKVAKGANPVEIRR 131 (550)
T ss_pred CccccC--------------------------------------------cchHHHHHHHHHHHHHHHHhccCCchhhhh
Confidence 999998 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccccCcccccccceeeeccccccCCChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccC
Q psy16434 335 GYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILG 414 (745)
Q Consensus 335 g~~~a~~~~l~~L~~~s~~~~~~~~~~~~L~~va~tsl~sK~~~~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~G 414 (745)
|+.+|.+...+.|++++++ +...+++.++|.+|.++ +...++++.+|+.+++++ +. |.|+ .|
T Consensus 132 Gi~~av~~vv~~L~k~sk~----Vtt~eeIaqVAtiSAng-----D~~ig~li~~a~~kvG~~--GV-----Itv~--~g 193 (550)
T KOG0356|consen 132 GIMLAVDAVVDELKKMSKP----VTTPEEIAQVATISANG-----DKEIGNLISDAMKKVGRK--GV-----ITVK--DG 193 (550)
T ss_pred hHHHHHHHHHHHHHHhCCC----CCCHHHHHHHHhhhcCC-----cHHHHHHHHHHHHHhCcC--Ce-----EEee--cC
Confidence 9999999999999999987 35678899999988886 788999999999999876 33 4443 57
Q ss_pred CCcccc-eeEeeEEEeecccCC---------ceeeeCceEEEeccCCCccccccC-------------------------
Q psy16434 415 SGLFNS-EIVQGMVFKRSVEGD---------ITKQTKAKIAVYTCPVDIATTETK------------------------- 459 (745)
Q Consensus 415 gs~~dS-~lv~G~~l~~~~~~~---------~~~i~nakIlil~~~Le~~k~e~k------------------------- 459 (745)
.++.|. ++++||.|+++|.++ ..+++||++|+.+.+++..+.-..
T Consensus 194 kt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~ 273 (550)
T KOG0356|consen 194 KTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALA 273 (550)
T ss_pred CccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHH
Confidence 777665 899999999999874 457899999998876654332100
Q ss_pred --------------------------------------------------CCCCcccccccccEEEEEECCeeEEEEEec
Q psy16434 460 --------------------------------------------------TPPAASELGYADSVAVDELGDTAVVVFKLE 489 (745)
Q Consensus 460 --------------------------------------------------~~p~a~~LG~a~~vq~~eiGdtsvti~~g~ 489 (745)
+.....+||.+..+.... +..+++.|.
T Consensus 274 tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtk---d~t~ll~g~ 350 (550)
T KOG0356|consen 274 TLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTK---DDTMLLKGK 350 (550)
T ss_pred HHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEec---CcceeeCCC
Confidence 455668899998887666 667777652
Q ss_pred ----------------------------------ccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH--------
Q psy16434 490 ----------------------------------AAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK-------- 527 (745)
Q Consensus 490 ----------------------------------~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~~-------- 527 (745)
+++++.++|-++|.++.+++|.+.+++||+++++++++
T Consensus 351 ~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeGivpGGG 430 (550)
T KOG0356|consen 351 GNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEGIVPGGG 430 (550)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcCcccCCc
Confidence 13467788999999999999999999999999999887
Q ss_pred --------------------------------HHH-HHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecc
Q psy16434 528 --------------------------------VFV-KTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAA 574 (745)
Q Consensus 528 --------------------------------~IP-r~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~ 574 (745)
..| .++++|||.|...++.|++. ..+|||...+ ++.|+.
T Consensus 431 ~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~------~~~gyda~~~--ey~dlv 502 (550)
T KOG0356|consen 431 TALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN------DDYGYDAAKG--EYVDLV 502 (550)
T ss_pred hHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh------hhhhhhhhcc--cHHHHH
Confidence 357 89999999999999999983 1789999999 999999
Q ss_pred cccccccccchhhHhhhhhhcchhhcccc
Q psy16434 575 EAGILDLYLTKMWALKYATSAANTILQQT 603 (745)
Q Consensus 575 g~gI~Ds~lVkG~vL~~A~e~a~mil~ID 603 (745)
..|++||..|-..++..|...++++.+.+
T Consensus 503 ~~GiidP~kVvr~al~~a~~vasll~tte 531 (550)
T KOG0356|consen 503 EAGIIDPTKVVRTALTDAAGVASLLTTTE 531 (550)
T ss_pred hccCCChHHHHHHhhhhhhHHHHHHhhhe
Confidence 99999999999999999998888777654
No 43
>KOG0361|consensus
Probab=99.97 E-value=3.3e-31 Score=279.64 Aligned_cols=275 Identities=20% Similarity=0.239 Sum_probs=246.1
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH------
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVFV------ 530 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~IP------ 530 (745)
-||+++.|...++.|+.++|| |++++|+++.+ +.+..++..|. +..|+..++.+..-|++-++.+...|.
T Consensus 72 vhPaaktlVdia~sQDaEVGDGTTSVv~la~E~l-k~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~ 150 (543)
T KOG0361|consen 72 VHPAAKTLVDIARSQDAEVGDGTTSVVLLAAEFL-KEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTE 150 (543)
T ss_pred cChhHHHHHHHHhhccccccCCceeEeeeHHHHH-HhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhh
Confidence 689999999999999999999 99999999998 88888999998 888999999999999999987764222
Q ss_pred -HHHHhhccchhhHHHHHHHHHhhcCCccceeee--------cCCCcceeecccccccccccchhhHhhhhhhcch---h
Q psy16434 531 -KTLAENTGVKSNEVISKLYSAHNEGKKTYGFDI--------NGENSSVIDAAEAGILDLYLTKMWALKYATSAAN---T 598 (745)
Q Consensus 531 -r~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl--------~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~---m 598 (745)
|.|++.+ ..+.+.+|+.......++.+-+|+ ..+.|.|++.+|+.+.||.+|+|+++++.+++++ +
T Consensus 151 ~r~lL~Kc--A~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqq 228 (543)
T KOG0361|consen 151 LRELLEKC--AATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQ 228 (543)
T ss_pred HHHHHHHH--HHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhhC
Confidence 5555554 367788888776655555444432 2233699999999999999999999999999886 7
Q ss_pred hcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCC
Q psy16434 599 ILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGL 678 (745)
Q Consensus 599 il~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gI 678 (745)
|+++.||+|++++..||.+..+.++++.+.++++++.+.+.|++.+.+++++|.++|+|||++.-.|.|+|.+||++++|
T Consensus 229 PKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdi 308 (543)
T KOG0361|consen 229 PKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDI 308 (543)
T ss_pred ccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccC------cccccccccc
Q psy16434 679 MGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDR------PAQTCKYLHQ 737 (745)
Q Consensus 679 l~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~------~~~~~~~~~~ 737 (745)
.+..||+.+||.|+..++|++|+++..++.+..||+|..|++. |.|||+ .+++|++|-.
T Consensus 309 FCAGRV~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLR 375 (543)
T KOG0361|consen 309 FCAGRVPEEDLNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILR 375 (543)
T ss_pred eecCcCCHHHHHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEe
Confidence 9999999999999999999999999999999999999999995 999996 6889998854
No 44
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.96 E-value=3.8e-30 Score=295.85 Aligned_cols=271 Identities=19% Similarity=0.223 Sum_probs=224.1
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH---H-HH
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF---V-KT 532 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I---P-r~ 532 (745)
+||.++++.+++.-|+.++|| |++++|.++.+ ..+..++-+|. |..|+++++++++.+++.++.....+ . ..
T Consensus 68 ~hP~akll~~~a~~q~~~~GDGTtt~viLa~~Ll-~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~ 146 (525)
T TIGR02344 68 AHPAAKSMIELSRTQDEEVGDGTTSVIILAGEML-SVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAA 146 (525)
T ss_pred CCHHHHHHHHHHHhhhhhccCCcchhHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHH
Confidence 789999999999999999999 88899999988 77777888887 89999999999999999998754311 0 11
Q ss_pred ---HHh---hccch--hhHHHHHHHHHhh-----cC-CccceeeecCCCcceeecccccccccccchhhHhhhhhhcchh
Q psy16434 533 ---LAE---NTGVK--SNEVISKLYSAHN-----EG-KKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANT 598 (745)
Q Consensus 533 ---Lae---NAGld--~~~vlsKL~~~h~-----~g-~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~m 598 (745)
+++ ++... ..+.++++..... ++ ....-+|++. ++++.+++|+.+.|+.+++|+++++.+.+..|
T Consensus 147 l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~-~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m 225 (525)
T TIGR02344 147 MLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKR-YAKVEKIPGGDIEDSCVLKGVMINKDVTHPKM 225 (525)
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhh-ceEEEEecCCChHhcCcccceEEecccCCCCC
Confidence 221 11110 1233333322111 11 0011223221 24788999999999999999999999889999
Q ss_pred hcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCC
Q psy16434 599 ILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGL 678 (745)
Q Consensus 599 il~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gI 678 (745)
+.++.|++|+++++|||+++++.++++.+++++++++++++|++++++++++|.+.||+||+++++|+|++++||.++||
T Consensus 226 ~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I 305 (525)
T TIGR02344 226 RRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANI 305 (525)
T ss_pred ccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcc-cCCceEe--cccccCccccc
Q psy16434 679 MGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSF-CPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 679 l~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~-c~~~~~~--~~e~~~~~~~~ 732 (745)
++++++++++|+|||++|||+++++++++.++.||+ |+.|+++ |.++|.+-+.|
T Consensus 306 ~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~ 362 (525)
T TIGR02344 306 SAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTEC 362 (525)
T ss_pred eEEecCCHHHHHHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcC
Confidence 999999999999999999999999999999999999 9999984 66666554433
No 45
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.96 E-value=3.3e-30 Score=296.40 Aligned_cols=272 Identities=22% Similarity=0.218 Sum_probs=224.4
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++-+++..|++++|| |++++|.++.+ .++..++-+|. |..++++++++++.+++
T Consensus 59 ~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDGTtt~viLa~~ll-~~~~~li~~gi~p~~Ii~g~~~a~~~~~~ 137 (526)
T cd03339 59 VTVTNDGATILEKMDVDHQIAKLLVELSKSQDDEIGDGTTGVVVLAGALL-EQAEKLLDRGIHPIRIADGYEQACKIAVE 137 (526)
T ss_pred EEEeCcHHHHHHHhcccCHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4455543333332223789999999999999999999 88888999988 77778888887 89999999999999999
Q ss_pred HHHHHHHHH-----H-HHHHhhccchhhHHHHHHHHHhhcCCccc--------------eeeecCCCcceeecccccccc
Q psy16434 521 TFKGITKVF-----V-KTLAENTGVKSNEVISKLYSAHNEGKKTY--------------GFDINGENSSVIDAAEAGILD 580 (745)
Q Consensus 521 vlk~~~~~I-----P-r~LaeNAGld~~~vlsKL~~~h~~g~~~~--------------GIDl~~~~ikI~dm~g~gI~D 580 (745)
.++.....+ + ..|..-+ .+.+.+|+...+.+.++.+ -+|.+ .+++.+++|+++.|
T Consensus 138 ~L~~~~~~~~~~~~~~~~l~~ia---~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~--~I~i~ki~Ggs~~d 212 (526)
T cd03339 138 HLEEIADKIEFSPDNKEPLIQTA---MTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFE--LIKVEGKVGGRLED 212 (526)
T ss_pred HHHHhccccCCCcccHHHHHHHH---HHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchH--HeEEEEecCcCHHH
Confidence 998765422 1 1121111 1122222222111111111 12322 35999999999999
Q ss_pred cccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Q psy16434 581 LYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVV 660 (745)
Q Consensus 581 s~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl 660 (745)
+.+++|+++++.+.+..|++++++++|++++++||++++++++++.++++++++++.++|++++++++++|++.|++||+
T Consensus 213 S~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi 292 (526)
T cd03339 213 TKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVI 292 (526)
T ss_pred cceeeeEEEecccCCCCCCceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe
Q psy16434 661 AGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ 721 (745)
Q Consensus 661 ~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~ 721 (745)
++++|+|.|++||.++||++++++++++|+|||++|||+++++++++.++.||+|+.|+++
T Consensus 293 ~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~ 353 (526)
T cd03339 293 CQWGFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREI 353 (526)
T ss_pred eCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHHHHhCCEEecchhhCChhhcccCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 46
>KOG0364|consensus
Probab=99.96 E-value=2e-29 Score=270.03 Aligned_cols=288 Identities=19% Similarity=0.202 Sum_probs=234.0
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
|.++|.+.-+.+.-.-.||+++.+.+.++.|++++|| |++++++|+.+ ..+.-++-+|. +-.+++++.++++|++.
T Consensus 55 i~~tndg~ailrei~Vahpaaksmiel~rtqdeevgdgttsvi~lagE~L-~~~~~~l~~~~Hp~~i~ka~~~aled~~~ 133 (527)
T KOG0364|consen 55 IVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEML-NVAEPFLEEGIHPTVIIKAYIKALEDNIR 133 (527)
T ss_pred eEEecCcHHHHHHHhhcCcchhhHhhhhhcccccccCCceeeeeehHHHh-hhcchhhhcCcchHHHHHHHHHHHHHHHH
Confidence 3344433333333233789999999999999999999 99999999998 55555888887 89999999999999999
Q ss_pred HHHHHHHHHH-HHHHhhccchhhHHHHHHHHHhhcCCccc--------------eeeecCCCcceeecccccccccccch
Q psy16434 521 TFKGITKVFV-KTLAENTGVKSNEVISKLYSAHNEGKKTY--------------GFDINGENSSVIDAAEAGILDLYLTK 585 (745)
Q Consensus 521 vlk~~~~~IP-r~LaeNAGld~~~vlsKL~~~h~~g~~~~--------------GIDl~~~~ikI~dm~g~gI~Ds~lVk 585 (745)
+++.+...+. ..-++-.++-...+-+|+.+.|++....+ -+|+.+. .++.+.+++.+.||++++
T Consensus 134 ~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y-~kveKvpgg~l~~s~vl~ 212 (527)
T KOG0364|consen 134 ALDKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRY-AKVEKVPGGLLEDSCVLK 212 (527)
T ss_pred HHHhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhh-ccccccCcccccccceec
Confidence 9985543110 00000000111223333333333221111 2344332 488899999999999999
Q ss_pred hhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcc
Q psy16434 586 MWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKF 665 (745)
Q Consensus 586 G~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I 665 (745)
|..+++.+.|..|-..|.+|++.+++|||||.+.+.+..+.+...+++...++-|+++++.++..|+...||||++++|+
T Consensus 213 Gv~~nkdv~Hpkmrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~ 292 (527)
T KOG0364|consen 213 GVMINKDVTHPKMRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGV 292 (527)
T ss_pred ceeeccccCcHHHHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcc-cCCceEe--cccccCcccccc
Q psy16434 666 GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSF-CPAPPVQ--GRERDRPAQTCK 733 (745)
Q Consensus 666 ~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~-c~~~~~~--~~e~~~~~~~~~ 733 (745)
+|+|+|||.++||+++||+.+.|..|++++|||+++++.+++.+.+.|+ |+.|+++ |+|+|+|-..|+
T Consensus 293 sdla~hyl~k~~iT~~rr~rKtDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck 363 (527)
T KOG0364|consen 293 SDLAQHYLLKANITAIRRLRKTDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCK 363 (527)
T ss_pred hHHHHHHHHhcCchhhhhhhccccchhhhhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcC
Confidence 9999999999999999999999999999999999999999999999998 9999996 999998665554
No 47
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=99.96 E-value=2.1e-29 Score=289.32 Aligned_cols=287 Identities=23% Similarity=0.322 Sum_probs=231.6
Q ss_pred eEEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHH
Q psy16434 443 KIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGV 519 (745)
Q Consensus 443 kIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL 519 (745)
++.+++..-...+.-.-+||.++++.++...|++++|| |++++|.++.+ ..+..++-+|. |..++++++++++.++
T Consensus 51 ~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd~~~GDGTtt~viL~~~ll-~~~~~li~~gi~p~~Ii~g~~~a~~~~~ 129 (519)
T TIGR02339 51 DVTITNDGATILKEMDIEHPAAKMLVEVAKTQDAEVGDGTTTAVVLAGELL-EKAEDLLEQGIHPTVIIEGYRKAAEKAL 129 (519)
T ss_pred CEEEEccHHHHHHhccCCCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 34555544333332223789999999999999999999 88888899887 77778888887 8899999999999999
Q ss_pred HHHHHHHHHHH-------HHHHhhc---cc---hhhHHHHHHHHHh----hc--CCccceeeecCCCcceeecccccccc
Q psy16434 520 NTFKGITKVFV-------KTLAENT---GV---KSNEVISKLYSAH----NE--GKKTYGFDINGENSSVIDAAEAGILD 580 (745)
Q Consensus 520 ~vlk~~~~~IP-------r~LaeNA---Gl---d~~~vlsKL~~~h----~~--g~~~~GIDl~~~~ikI~dm~g~gI~D 580 (745)
..++.....+. ..++..+ -. ...+.++++.... .+ ....+-+|++. +++.+..|+++.|
T Consensus 130 ~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~--I~i~k~~Ggs~~d 207 (519)
T TIGR02339 130 EIIDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDN--IKIEKKTGGSIDD 207 (519)
T ss_pred HHHHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHH--eEEEEccCcChhc
Confidence 99987653210 1122211 00 0112333332110 00 01111234433 4889999999999
Q ss_pred cccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Q psy16434 581 LYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVV 660 (745)
Q Consensus 581 s~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl 660 (745)
+.+++|+++++...+..|+.+++|++|++++++||++++++++++.+++++++++++++|+++++++|++|++.|++||+
T Consensus 208 s~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi 287 (519)
T TIGR02339 208 TELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVF 287 (519)
T ss_pred ceeEeeEEEecCCCCCCCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 661 AGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 661 ~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
++++|+|.|++||.++||++++++++++|+|||++|||+++++++++.++.||+|+.|+++ |.++|.+-+.|
T Consensus 288 ~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~ 361 (519)
T TIGR02339 288 CQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGC 361 (519)
T ss_pred ECCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999996 67777654443
No 48
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.96 E-value=4.5e-30 Score=295.40 Aligned_cols=272 Identities=23% Similarity=0.229 Sum_probs=224.5
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++.++++.|+.++|| |++++|.++.+ ..+..++-+|. |..|+++++.+++.+++
T Consensus 63 ~~ITnDG~tIlk~l~~~hP~akll~~~a~~qd~~~GDGTttvvvLa~~Ll-~~a~~li~~gihp~~Ii~g~~~a~~~~~~ 141 (532)
T TIGR02343 63 ITVTNDGATILSQMDVDNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALL-EQAEALLDKGIHPIKIAEGFEVAARVAVE 141 (532)
T ss_pred EEEeCcHHHHHHHccCCCHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 4555544333332223789999999999999999999 88888999988 77888888897 88999999999999999
Q ss_pred HHHHHHHHHH------HHHHhhccchhhHHHHHHHHHhhcCCccc--------------eeeecCCCcceeecccccccc
Q psy16434 521 TFKGITKVFV------KTLAENTGVKSNEVISKLYSAHNEGKKTY--------------GFDINGENSSVIDAAEAGILD 580 (745)
Q Consensus 521 vlk~~~~~IP------r~LaeNAGld~~~vlsKL~~~h~~g~~~~--------------GIDl~~~~ikI~dm~g~gI~D 580 (745)
.++.....++ ..|..- ..+.+.+|+.+.+.+.++.+ -+|++ .+++.++.|+++.|
T Consensus 142 ~L~~~~~~~~~~~~~~~~l~~i---a~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~--~I~i~ki~Ggs~~d 216 (532)
T TIGR02343 142 HLEEISEEISDDNNNKEPLIQA---AKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFD--LIKVEGKVGGSLED 216 (532)
T ss_pred HHHHhccccCcCCCCHHHHHHH---HHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHH--HeeEEEecCCCccc
Confidence 9987654220 111111 01122222222111111111 12333 35999999999999
Q ss_pred cccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Q psy16434 581 LYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVV 660 (745)
Q Consensus 581 s~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl 660 (745)
+.+++|+++++...+..|++++++++|++++++||++++++++++.+++++++++|.++|++++++++++|++.|++||+
T Consensus 217 s~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi 296 (532)
T TIGR02343 217 TKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVI 296 (532)
T ss_pred ceeEeeEEEecCcCCCCCCeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe
Q psy16434 661 AGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ 721 (745)
Q Consensus 661 ~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~ 721 (745)
++++|+|.|++||.++||++++++++++|+|||++|||+++++++++.++.||+|+.|+++
T Consensus 297 ~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~ 357 (532)
T TIGR02343 297 CQWGFDDEANHLLLQNDLPAVRWVGGHELELIAIATGGRIVPRFEELSEDKLGKAGLVREI 357 (532)
T ss_pred eCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHHHHhCCEEecccccCCHhHCcccceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 49
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=99.95 E-value=9.8e-30 Score=292.79 Aligned_cols=282 Identities=17% Similarity=0.208 Sum_probs=229.4
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++-+++.-|++++|| |++++|.++.+ ..+..++-+|. |..|+++++++++.+++
T Consensus 63 ~~iTnDG~TIlk~i~~~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll-~~a~~li~~gi~p~~Ii~g~~~a~~~~~~ 141 (533)
T PTZ00212 63 VTVTNDGATILKSVWLDNPAAKILVDISKTQDEEVGDGTTSVVVLAGELL-REAEKLLDQKIHPQTIIEGWRMALDVARK 141 (533)
T ss_pred EEEeccHHHHHHhccCcCHHHHHHHHHHHhhhhhhCCchhHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4555543333332223789999999999999999999 88889999988 77777888887 89999999999999999
Q ss_pred HHHHHHHHH-------HHHHHhhccchhhHHHHHHHHHhhcCCccc----------eeeecCCCcceeeccccccccccc
Q psy16434 521 TFKGITKVF-------VKTLAENTGVKSNEVISKLYSAHNEGKKTY----------GFDINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 521 vlk~~~~~I-------Pr~LaeNAGld~~~vlsKL~~~h~~g~~~~----------GIDl~~~~ikI~dm~g~gI~Ds~l 583 (745)
.++.....+ ...|..- ..+.+.+|+.+.+.+.++.+ ++|.+ ++++.++.|+++.|+++
T Consensus 142 ~L~~~s~~~~~~~~~~~~~l~~v---a~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~--~I~i~ki~Ggsi~ds~l 216 (533)
T PTZ00212 142 ALEEIAFDHGSDEEKFKEDLLNI---ARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLD--YIQIIKKPGGTLRDSYL 216 (533)
T ss_pred HHHHhCcCCCccchhhHHHHHHH---HHHHhcccccchhHHHHHHHHHHHHHHHhccCCcc--ceEEEEecCcCccccEE
Confidence 997754311 1112111 12233334333322222222 22333 34899999999999999
Q ss_pred chhhHhhhhhhcchhhcccccceeeeeccCcccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeC
Q psy16434 584 TKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTET-KGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~-~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~ 662 (745)
++|+++++.+.+ .|+.+++|++|+++++|||++++++ ++++.+++++++..+.++|++++++++++|++.|+++|+++
T Consensus 217 v~G~v~~~~~~~-~~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~ 295 (533)
T PTZ00212 217 EDGFILEKKIGV-GQPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINR 295 (533)
T ss_pred EEeEEEecccCC-CCCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeC
Confidence 999999987655 5899999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 663 ~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
++|+|.+++||.++||++++|+++++++|||++|||+++++++++.+++||+|+.|++. |+++|.+...|
T Consensus 296 ~~I~d~a~~~L~~~~I~avr~v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~ 367 (533)
T PTZ00212 296 QLIYNYPEQLFAEAGIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGC 367 (533)
T ss_pred CCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999975 67777655444
No 50
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.95 E-value=1.8e-29 Score=289.73 Aligned_cols=283 Identities=16% Similarity=0.187 Sum_probs=228.5
Q ss_pred eEEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHH
Q psy16434 443 KIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGV 519 (745)
Q Consensus 443 kIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL 519 (745)
++.++|..-...+.-.-+||.++++.+++..|++++|| |++++|+|+.+ ..+..++-+|. |..++++++++.+.++
T Consensus 50 ~~~iTnDG~tIlk~l~~~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll-~~a~~li~~gi~p~~I~~g~~~a~~~~~ 128 (517)
T cd03336 50 GVTVTNDGATILKSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELL-REAEKLVAQKIHPQTIIEGYRMATAAAR 128 (517)
T ss_pred CeEEeccHHHHHHHccCcChHHHHHHHHHHHHHhHhCCChhHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34555544333332223789999999999999999999 88899999988 77778888887 8999999999999999
Q ss_pred HHHHHHHHHH-----H--HHHHhhccchhhHHHHHHHHHhhcCCc--------cc--eeeecCCCcceeecccccccccc
Q psy16434 520 NTFKGITKVF-----V--KTLAENTGVKSNEVISKLYSAHNEGKK--------TY--GFDINGENSSVIDAAEAGILDLY 582 (745)
Q Consensus 520 ~vlk~~~~~I-----P--r~LaeNAGld~~~vlsKL~~~h~~g~~--------~~--GIDl~~~~ikI~dm~g~gI~Ds~ 582 (745)
+.++.....+ + ..|..-+ .+.+.+|+.+.+.+..+ .+ ++|.+ ++++.++.|+++.|++
T Consensus 129 ~~L~~~~~~~~~~~~~~~~~l~~ia---~t~lssk~~~~~~~~l~~l~~~A~~~v~~~~~~~--~i~i~ki~G~s~~ds~ 203 (517)
T cd03336 129 EALLSSAVDHSSDEEAFREDLLNIA---RTTLSSKILTQDKEHFAELAVDAVLRLKGSGNLD--AIQIIKKLGGSLKDSY 203 (517)
T ss_pred HHHHHhccCcccccchhHHHHHHHH---HhhccccccchhHHHHHHHHHHHHHHhhccCCcc--ceeEEEccCCCccceE
Confidence 9997754311 0 1111111 11222222111111111 01 33443 3599999999999999
Q ss_pred cchhhHhhhhhhcchhhcccccceeeeeccCcccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEe
Q psy16434 583 LTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTET-KGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVA 661 (745)
Q Consensus 583 lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~-~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~ 661 (745)
+++|+++++...+ .|+++++|++|+++++|||++++++ ++++.++++++++.+.+.|++++++++++|++.|+++|++
T Consensus 204 l~~G~v~~~~~~~-~~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~ 282 (517)
T cd03336 204 LDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFIN 282 (517)
T ss_pred EEeeEEEecccCC-CCCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEe
Confidence 9999999987654 4799999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 662 GAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 662 ~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
+++|+|.+++||.++||++++++++++|+|||++|||+++++++++.+++||+|+.|++. |.++|.+-..|
T Consensus 283 ~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~ 355 (517)
T cd03336 283 RQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGV 355 (517)
T ss_pred CCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecccCCCCcccccccceEEEEEECCeEEEEEEcc
Confidence 999999999999999999999999999999999999999999999999999999999985 78888665443
No 51
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.95 E-value=4.2e-29 Score=286.75 Aligned_cols=286 Identities=22% Similarity=0.289 Sum_probs=230.3
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++.++..-|+.++|| |++++|.++.+ ..+..++-.|. +..++++++++.+.+++
T Consensus 51 ~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDGTtt~viLa~~ll-~~~~~li~~gi~p~~I~~g~~~a~~~~~~ 129 (517)
T cd03343 51 VTITNDGATILKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELL-EKAEDLLDQNIHPTVIIEGYRLAAEKALE 129 (517)
T ss_pred EEEEccHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH-HHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 4555544333333233789999999999999999999 88888888877 66667777786 88899999999999999
Q ss_pred HHHHHHHHHH-------HHHHhhc-c-c---hhhHHHHHHHHHh-----hcCCccceeeecCCCcceeeccccccccccc
Q psy16434 521 TFKGITKVFV-------KTLAENT-G-V---KSNEVISKLYSAH-----NEGKKTYGFDINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 521 vlk~~~~~IP-------r~LaeNA-G-l---d~~~vlsKL~~~h-----~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~l 583 (745)
.++.....+. ..++..+ + . ...+.++++.... ..+....-+|.+ ++++.+..|+++.|+.+
T Consensus 130 ~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~--~I~i~k~~Ggs~~ds~l 207 (517)
T cd03343 130 LLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLD--NIKIEKKTGGSVDDTEL 207 (517)
T ss_pred HHHHhhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHH--HeeEEeecCcCHHHcce
Confidence 9987654221 1122111 0 0 0112223321110 111000123433 35899999999999999
Q ss_pred chhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCC
Q psy16434 584 TKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGA 663 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~ 663 (745)
++|+++++...+..|+..++|++|++++++||++++++++++.++++++++++.++|++++++++++|++.|++||++++
T Consensus 208 v~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~ 287 (517)
T cd03343 208 IRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQK 287 (517)
T ss_pred eeeEEEeccCCCCCCccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 664 KFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 664 ~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
+|++.|++||.++||++++++++++|+|||++|||+++++++++..+.||+|+.|+++ |+++|.+-+.|
T Consensus 288 ~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~ 358 (517)
T cd03343 288 GIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGC 358 (517)
T ss_pred CccHHHHHHHhHCCcEEEEeCCHHHHHHHHHHhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999986 67777665444
No 52
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.95 E-value=2.8e-29 Score=288.55 Aligned_cols=286 Identities=15% Similarity=0.159 Sum_probs=229.3
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++.+++..|++++|| |++++|+++.+ .++..++-+|. |..++++++++++.+++
T Consensus 52 ~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~qd~~~GDGTTtvvvLa~~Ll-~~a~~li~~gihp~~Ii~g~~~a~~~~~~ 130 (531)
T TIGR02347 52 IKLTKDGNVLLNEMQIQHPTASMIARAATAQDDITGDGTTSTVILIGELL-KQAERYILEGIHPRILTEGFEIARGELLE 130 (531)
T ss_pred EEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCcHHHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 4455544333333233789999999999999999999 88999999988 77888888897 88999999999999999
Q ss_pred HHHHHHHHHH--------HHHHhhcc---c--hhhHHHHHHHHHhhc--CCccceeeecCCCcceeecccccccccccch
Q psy16434 521 TFKGITKVFV--------KTLAENTG---V--KSNEVISKLYSAHNE--GKKTYGFDINGENSSVIDAAEAGILDLYLTK 585 (745)
Q Consensus 521 vlk~~~~~IP--------r~LaeNAG---l--d~~~vlsKL~~~h~~--g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVk 585 (745)
.++.....+| ..++..+- . ...+.++++....-. +....-+|+++ +++.+..|+++.|+.+++
T Consensus 131 ~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~--I~i~k~~g~s~~ds~~v~ 208 (531)
T TIGR02347 131 FLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFM--VEIMEMKHKSATDTTLIR 208 (531)
T ss_pred HHHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhH--eEEEEecCCCccccEEEe
Confidence 9987652111 11111110 0 012222332111000 00000134333 378889999999999999
Q ss_pred hhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcC-------Cc-
Q psy16434 586 MWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTG-------AN- 657 (745)
Q Consensus 586 G~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~g-------vn- 657 (745)
|+++++...+..|+++++|++|+++++|||+.+++.++.+.++++++++.+.+.|++++++++++|+++| ++
T Consensus 209 Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~ 288 (531)
T TIGR02347 209 GLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDK 288 (531)
T ss_pred eEEEecCcCCCCCceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence 9999999888899999999999999999999999999999999999999999999999999999999987 26
Q ss_pred --EEEeCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 658 --VVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 658 --VVl~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
||+++++|+|.++|||.++||++++|+++++|+|||++|||+++++++++.+++||+|+.|+++ |.++|.+-+.|
T Consensus 289 ~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~ 367 (531)
T TIGR02347 289 GFVVINQKGIDPPSLDLLAKEGIMALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEV 367 (531)
T ss_pred cEEEEeCCCccHHHHHHHHHCCceEEccCCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999999886 78888665444
No 53
>KOG0362|consensus
Probab=99.95 E-value=1.9e-28 Score=266.31 Aligned_cols=285 Identities=33% Similarity=0.477 Sum_probs=233.7
Q ss_pred ceEEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHH
Q psy16434 442 AKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDG 518 (745)
Q Consensus 442 akIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DA 518 (745)
-++++++++=-+-+.-.-+||+++.|..|...|+.++|| +-+++|+|+++ ..+..+|-.|. +..+.+.++.+...+
T Consensus 60 ~k~~~TndaatIlrelev~HPaakllv~a~~~q~~~iGDgtnfvvvla~~LL-e~Ae~li~~Gl~~~ei~~gy~~A~~~~ 138 (537)
T KOG0362|consen 60 GKTFVTNDAATILRELEVEHPAAKLLVEATQMQEEEIGDGTNFVVVLAGALL-EQAEELIRMGLTPAEISEGYETATKEA 138 (537)
T ss_pred ceEEEcCChHHHHHHhhccCcHHHHHHHHHHHHHHhhCCCceEeehhHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 356677765333332223899999999999999999999 77788899988 77888888887 888999999999999
Q ss_pred HHHHHHHHH-HH-----H----HHHHhhccchhhHHHHHHHHHhhc--CCccceeeecCCCcceeecccccccccccchh
Q psy16434 519 VNTFKGITK-VF-----V----KTLAENTGVKSNEVISKLYSAHNE--GKKTYGFDINGENSSVIDAAEAGILDLYLTKM 586 (745)
Q Consensus 519 L~vlk~~~~-~I-----P----r~LaeNAGld~~~vlsKL~~~h~~--g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG 586 (745)
+..+.+.+. ++ + +.....--+...+.+.++.....- ... -+++.+ +++++++.++++.+|+++.|
T Consensus 139 ~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~-~~Fnvd--nIrVcKi~Gg~l~~S~Vv~G 215 (537)
T KOG0362|consen 139 LEILPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLVAKACVSILPL-MSFNVD--NIRVCKILGGGLEDSCVVCG 215 (537)
T ss_pred HHHhHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccc-cccccc--ceEEEEEecCCcccceeeEE
Confidence 999998775 10 0 111111112344555555443211 111 124444 45999999999999999999
Q ss_pred hHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCccc
Q psy16434 587 WALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFG 666 (745)
Q Consensus 587 ~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~ 666 (745)
.+++.-++ +.+++-.+.++++++||++...+|+++++.+++++++.+|.+.|+..++.+|+.|.+.|++||++.+.|+
T Consensus 216 mVfkr~~e--G~v~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~ 293 (537)
T KOG0362|consen 216 MVFKRDPE--GEVKSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVD 293 (537)
T ss_pred EEeccccC--CcccccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccc
Confidence 99996544 5568889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccC-ccccc
Q psy16434 667 DMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDR-PAQTC 732 (745)
Q Consensus 667 d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~-~~~~~ 732 (745)
++++|||++++||++|..+++||+||||..||++++++..+..+.||+|.+++.+ |++.++ |.+.|
T Consensus 294 em~Lhflnky~ImVlqi~Sk~eLrrlcrtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~ 362 (537)
T KOG0362|consen 294 EMTLHFLNKYKIMVLQINSKFDLRRLCRTVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWES 362 (537)
T ss_pred hhhhhhhccccEEEEEeccHhhHHHHHHHcCCccchhccCCCCccccccceeeeeecCCceEEEEeecc
Confidence 9999999999999999999999999999999999999999999999999999885 777775 55555
No 54
>KOG0359|consensus
Probab=99.95 E-value=2.3e-29 Score=269.30 Aligned_cols=269 Identities=15% Similarity=0.197 Sum_probs=231.9
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVFV-KTLAE 535 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~IP-r~Lae 535 (745)
.||++..+.++...|++..|| ++++++.|+.+ +.+...+..|. +..|.++++-+.++++..++..-..+. .+|.+
T Consensus 69 qhPTa~lIakaatAqdd~tGDGttS~VlligEll-kqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~ 147 (520)
T KOG0359|consen 69 QHPTASLIAKVATAQDDITGDGTTSVVLLIGELL-KQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKD 147 (520)
T ss_pred cCchHHHHHHHHHHhhcccCCCcceEEEeeHHHH-HHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHH
Confidence 789999999999999999999 89999999988 78888888887 999999999999999999984322222 22322
Q ss_pred hccchhhHHHHHHHHHhhcCC-------------ccceeeecCCCcceeecccccccccccchhhHhhhhhhcchhhccc
Q psy16434 536 NTGVKSNEVISKLYSAHNEGK-------------KTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQ 602 (745)
Q Consensus 536 NAGld~~~vlsKL~~~h~~g~-------------~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~I 602 (745)
- ..+.+.+|+...-++-. ..-.+|+.+- ++..|...+..|..+++|.++++...|..|++++
T Consensus 148 v---a~tsl~Tkv~~~la~~lt~~vv~aVl~i~~~~~~idl~mv--eim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~ 222 (520)
T KOG0359|consen 148 V---ARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMV--EIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRV 222 (520)
T ss_pred H---HHHhhcCcccHHHHhHhHHHHHhhheeeccCCCCcchhHH--HhhhhccCchhhhHHhhhhhccCCCCCcccccch
Confidence 1 13333333322211110 1112455544 8899999999999999999999999999999999
Q ss_pred ccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCc----EEEeCCcccHHHHHHHHHcCC
Q psy16434 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGAN----VVVAGAKFGDMALHYLNKYGL 678 (745)
Q Consensus 603 Dn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvn----VVl~~~~I~d~al~~L~k~gI 678 (745)
.|+-|+++|.+|||+|+|.++.+.++++++.+.+...|++++++.+++|++++-. ||++|+|||+..++.|+++||
T Consensus 223 e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gI 302 (520)
T KOG0359|consen 223 EDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGI 302 (520)
T ss_pred hceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcch
Confidence 9999999999999999999999999999999999999999999999999999854 799999999999999999999
Q ss_pred eEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccccc
Q psy16434 679 MGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTCKY 734 (745)
Q Consensus 679 l~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~~~ 734 (745)
+++||.++..|||+..+||+..++++|+++++.||+|+.+++. |+|||||.+.|++
T Consensus 303 laLRRAKRRNmERL~lacGG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~ 360 (520)
T KOG0359|consen 303 LALRRAKRRNMERLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNN 360 (520)
T ss_pred HHHHHHhhhhHHHHHHhhccceecccccCChhhccccceeEEeeccceeeEeeecCCC
Confidence 9999999999999999999999999999999999999999997 9999999998874
No 55
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.95 E-value=6.5e-29 Score=285.49 Aligned_cols=290 Identities=19% Similarity=0.229 Sum_probs=230.1
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++.++.+.|+.++|| |++++|.++.+ ..+..++-+|. |..++++++++++.+++
T Consensus 52 ~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDGTtt~viL~~~ll-~~~~~li~~gi~p~~Ii~g~~~a~~~~~~ 130 (522)
T cd03340 52 VTISNDGATILKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFL-KEAKPFIEDGVHPQIIIRGYRKALQLAIE 130 (522)
T ss_pred EEEeccHHHHHHHccccCHHHHHHHHHHHHhHhHhCCChhHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4555544333332223789999999999999999999 88889999988 77777777887 99999999999999999
Q ss_pred HHHHHHHHHH-------HHHHhhccchhhHHHHHHHHHhhcCCc--------cceeeecCCCcceeecccccccccccch
Q psy16434 521 TFKGITKVFV-------KTLAENTGVKSNEVISKLYSAHNEGKK--------TYGFDINGENSSVIDAAEAGILDLYLTK 585 (745)
Q Consensus 521 vlk~~~~~IP-------r~LaeNAGld~~~vlsKL~~~h~~g~~--------~~GIDl~~~~ikI~dm~g~gI~Ds~lVk 585 (745)
.++.....+. +....+. ..+.+.+|+.+.+.+..+ .++-+.+.+.+++.++.|+++.|+++++
T Consensus 131 ~L~~~s~~~~~~~~~~~~~~l~~i--a~t~l~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds~lv~ 208 (522)
T cd03340 131 KIKEIAVNIDKEDKEEQRELLEKC--AATALNSKLIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDSQLVN 208 (522)
T ss_pred HHHHhhcccCcccccccHHHHHHH--HHHHhccCcchhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhceeee
Confidence 9977543110 1111111 011222222211111111 1121222234589999999999999999
Q ss_pred hhHhhhhhhcc---hhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeC
Q psy16434 586 MWALKYATSAA---NTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662 (745)
Q Consensus 586 G~vL~~A~e~a---~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~ 662 (745)
|+++++...+. .|++++++|+|+++++|||+++++.++++.++++.+++++.++|++++.+++++|+++|+|||+++
T Consensus 209 Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~ 288 (522)
T cd03340 209 GVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSK 288 (522)
T ss_pred eEEEecccCccccccCCccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 99999877744 468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCc------cccccc
Q psy16434 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRP------AQTCKY 734 (745)
Q Consensus 663 ~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~------~~~~~~ 734 (745)
++|+|.+++||.++||+++++++++||+|||++|||+++++++++.++.||+|+.|+++ |+++|.+ .+.|++
T Consensus 289 ~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI 368 (522)
T cd03340 289 LPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTI 368 (522)
T ss_pred CCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEeeccccCCccccccceEEEEEEECCEEEEEEECCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999974 7778854 455566
Q ss_pred cc
Q psy16434 735 LH 736 (745)
Q Consensus 735 ~~ 736 (745)
|.
T Consensus 369 ll 370 (522)
T cd03340 369 IL 370 (522)
T ss_pred EE
Confidence 54
No 56
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.95 E-value=1.5e-28 Score=282.14 Aligned_cols=286 Identities=18% Similarity=0.193 Sum_probs=230.5
Q ss_pred eEEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHH
Q psy16434 443 KIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGV 519 (745)
Q Consensus 443 kIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL 519 (745)
++.+++..-...+.-.-+||.++++-++++.|+.++|| |++++|.|+.+ ..+..++-.|. |..++++++++.+.++
T Consensus 51 ~~~iTnDG~tIlk~l~i~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll-~~a~~li~~gihp~~Ii~g~~~a~~~~~ 129 (519)
T TIGR02341 51 GIMVTNDGATILKSIGVDNPAAKVLVDMSKVQDDEVGDGTTSVTVLAAELL-REAEKLVNQKIHPQTIISGYRRATKAAQ 129 (519)
T ss_pred CeEEeccHHHHHHHccCcChHHHHHHHHHHHhHhhhCCchhHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34455543233332223789999999999999999999 88899999988 77778888887 9999999999999999
Q ss_pred HHHHHHHHHH--H----HHHHhhccchhhHHHHHHHHHhhcCCccceeee--------cCCCcceeecccccccccccch
Q psy16434 520 NTFKGITKVF--V----KTLAENTGVKSNEVISKLYSAHNEGKKTYGFDI--------NGENSSVIDAAEAGILDLYLTK 585 (745)
Q Consensus 520 ~vlk~~~~~I--P----r~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl--------~~~~ikI~dm~g~gI~Ds~lVk 585 (745)
+.++.....+ . +....+. ..+.+.+|+...+.+.++.+++|. +.+++++.++.|+++.|+++++
T Consensus 130 ~~L~~~~~~~~~~~~~~~~~L~~i--a~t~l~ski~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s~l~~ 207 (519)
T TIGR02341 130 EALKKSSIDNGSDKTKFRDDLLNI--ARTTLSSKILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDSYLDE 207 (519)
T ss_pred HHHHHhcccccCcccccHHHHHHH--HHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccceEEe
Confidence 9997754311 0 1111111 123334444433333222222211 1123588899999999999999
Q ss_pred hhHhhhhhhcchhhcccccceeeeeccCcccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCc
Q psy16434 586 MWALKYATSAANTILQQTKAKIAVYTCPVDIATTET-KGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664 (745)
Q Consensus 586 G~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~-~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~ 664 (745)
|+++++.+.+ .|+++++|++|+++++|||++++++ ++++.+++++++..+.+.|+++++++++.|++.|+|+++++++
T Consensus 208 G~v~~~~~~~-~~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~ 286 (519)
T TIGR02341 208 GFLLEKKIGV-NQPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQL 286 (519)
T ss_pred eEEEeccCCC-CCceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCc
Confidence 9999987655 5789999999999999999999997 8999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 665 FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 665 I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
|+|.++|||.++||++++++++++|+|||++|||+++++++++.+++||+|+.|++. |.++|.+-..|
T Consensus 287 I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~ 356 (519)
T TIGR02341 287 IYNYPEQLFADAGVMAIEHADFEGIERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGV 356 (519)
T ss_pred CCHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecccccCCccccccCceEEEEEECCEEEEEEEcC
Confidence 999999999999999999999999999999999999999999999999999999986 78888655433
No 57
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.95 E-value=4.1e-28 Score=279.18 Aligned_cols=287 Identities=22% Similarity=0.258 Sum_probs=228.7
Q ss_pred eEEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHH
Q psy16434 443 KIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGV 519 (745)
Q Consensus 443 kIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL 519 (745)
++.+++..-...+.-.-+||.++++.++++-|++++|| |++++|.++.+ ..+..++-.|. |..++++++++++.++
T Consensus 43 ~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDGTTt~vvLa~~ll-~~~~~li~~gi~p~~Ii~g~~~a~~~~~ 121 (527)
T cd03335 43 DVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGTTSVVIIAAELL-KRANELVKQKIHPTTIISGYRLACKEAV 121 (527)
T ss_pred CEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcchHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34555544333333333789999999999999999999 88889999988 77777788887 8899999999999999
Q ss_pred HHHHH-HHHHH----H---HHHHhhc---cc--hhhHHHHHHHHHhh------cCCccceeeecCCCcceeecccccccc
Q psy16434 520 NTFKG-ITKVF----V---KTLAENT---GV--KSNEVISKLYSAHN------EGKKTYGFDINGENSSVIDAAEAGILD 580 (745)
Q Consensus 520 ~vlk~-~~~~I----P---r~LaeNA---Gl--d~~~vlsKL~~~h~------~g~~~~GIDl~~~~ikI~dm~g~gI~D 580 (745)
+.++. ....+ . ..++..+ -. .....++++..... +.....-+|++. +++.+..|+++.|
T Consensus 122 ~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~--I~i~~~~Ggs~~~ 199 (527)
T cd03335 122 KYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKA--VNILKAHGKSAKE 199 (527)
T ss_pred HHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHH--eEEEEecCcChhh
Confidence 99985 43211 1 1122211 00 01123333321110 000111144443 4889999999999
Q ss_pred cccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Q psy16434 581 LYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVV 660 (745)
Q Consensus 581 s~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl 660 (745)
+.+++|+++++...+..|+++++|++|+++++||++.+++.++++.++++++++.+.++|++++++++++|+++|++||+
T Consensus 200 s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi 279 (527)
T cd03335 200 SYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVL 279 (527)
T ss_pred cceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCC------CCCCcccCCceEe--cccccCccccc
Q psy16434 661 AGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTY------IKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 661 ~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~------~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
++++|+|.|++||.++||++++|+++++|+|||++|||+++++++++. ++.||+|+.|+++ +.++|.+-+.|
T Consensus 280 ~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~ 359 (527)
T cd03335 280 TTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGT 359 (527)
T ss_pred eCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcC
Confidence 999999999999999999999999999999999999999999997653 3479999999986 67777654433
No 58
>KOG0358|consensus
Probab=99.94 E-value=4.7e-28 Score=255.56 Aligned_cols=292 Identities=17% Similarity=0.225 Sum_probs=248.9
Q ss_pred ceEEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHH
Q psy16434 442 AKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDG 518 (745)
Q Consensus 442 akIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DA 518 (745)
..+.+.|..-.+-|...--||.+++|...+..|+.+-|| |++++++|+.+ .....++-+|. |..|.+.++++...+
T Consensus 60 gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDGTTsVVilaGaLL-~~~~~LL~kgiHPtvIsdsfq~a~~~~ 138 (534)
T KOG0358|consen 60 GEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDGTTSVVILAGALL-EAAEKLLQKGIHPTVISDSFQSAAKKA 138 (534)
T ss_pred CcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCCceEEEEehhhHH-HHHHHHHhcCCCchhhhHHHHHHHHHH
Confidence 345565544333333223789999999999999999999 99999999988 66677889998 999999999999999
Q ss_pred HHHHHHHHHHH----HHHHHhhccchhhHHHHHHHHHhhcCCccce---------------eeecCCCcceeeccccccc
Q psy16434 519 VNTFKGITKVF----VKTLAENTGVKSNEVISKLYSAHNEGKKTYG---------------FDINGENSSVIDAAEAGIL 579 (745)
Q Consensus 519 L~vlk~~~~~I----Pr~LaeNAGld~~~vlsKL~~~h~~g~~~~G---------------IDl~~~~ikI~dm~g~gI~ 579 (745)
+..+......+ -..|..+| .+++.+|+.++++.....+. +|++ ++++.+..|+.+.
T Consensus 139 v~il~~m~~~velsdre~Li~~a---tTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlk--dIkivkklGgtvd 213 (534)
T KOG0358|consen 139 VDILDEMSVPVELSDRESLIKSA---TTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLK--DIKIVKKLGGTVD 213 (534)
T ss_pred HHHHHhcCCCcccCcHHHHHHHH---HhHhhHHHHHhhccccchHHHHHHHhccCcccccccchh--hhhhHHhhCCccc
Confidence 99998865422 14466665 78899999988875544333 3333 3589999999999
Q ss_pred ccccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEE
Q psy16434 580 DLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVV 659 (745)
Q Consensus 580 Ds~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVV 659 (745)
|+.+++|.++.+...-..-+.+++.++|.+++|.+.++|+++..++.++++.+|+.++++|++|+.+++++|++.|+||+
T Consensus 214 Dte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvL 293 (534)
T KOG0358|consen 214 DTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVL 293 (534)
T ss_pred hhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEE
Confidence 99999999998777776689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCcc-----cHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe---ccccc-----
Q psy16434 660 VAGAKF-----GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ---GRERD----- 726 (745)
Q Consensus 660 l~~~~I-----~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~---~~e~~----- 726 (745)
+.|++| +|+|+|||.+.+||+++-+.++|+|.+|+.+|..++.++|.++++.||++..+++- |+-|+
T Consensus 294 liQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg 373 (534)
T KOG0358|consen 294 LIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLGCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITG 373 (534)
T ss_pred EEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcCCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEE
Confidence 999976 99999999999999999999999999999999999999999999999999999985 55354
Q ss_pred --Ccccccccccccc
Q psy16434 727 --RPAQTCKYLHQNA 739 (745)
Q Consensus 727 --~~~~~~~~~~~~~ 739 (745)
+..++|+++-..|
T Consensus 374 ~~n~g~tvsil~RGs 388 (534)
T KOG0358|consen 374 IQNAGRTVSILLRGS 388 (534)
T ss_pred eecCCCceEEEEecC
Confidence 3567787775543
No 59
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.94 E-value=1.4e-27 Score=274.00 Aligned_cols=282 Identities=18% Similarity=0.201 Sum_probs=225.4
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++-++++-|+.++|| |++++|.++.+ ..+..++-+|. |..++++++++.+.+++
T Consensus 45 ~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTtt~viLa~~Ll-~~a~~li~~gi~p~~Ii~g~~~a~~~~~~ 123 (517)
T TIGR02342 45 VIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGTTSVVILAGALL-GACETLLERGIHPTTISESFQIAADEAIK 123 (517)
T ss_pred EEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcchHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4455543333332223789999999999999999999 88888999988 77888888897 99999999999999999
Q ss_pred HHHHHHHHH----H---HHHHhhc--cc---hhhHHHHHHHHH----hhcCCccceeeecCCCcceeecccccccccccc
Q psy16434 521 TFKGITKVF----V---KTLAENT--GV---KSNEVISKLYSA----HNEGKKTYGFDINGENSSVIDAAEAGILDLYLT 584 (745)
Q Consensus 521 vlk~~~~~I----P---r~LaeNA--Gl---d~~~vlsKL~~~----h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lV 584 (745)
.++.....+ + ..++..+ +. ...+.++++... -.+....--+|++ ++++.++.|+++.|+.++
T Consensus 124 ~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~--~i~i~k~~Ggs~~ds~li 201 (517)
T TIGR02342 124 ILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLN--DIKVVKKLGGTIDDTELI 201 (517)
T ss_pred HHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHH--HeeEEeccCCChhhcEEE
Confidence 997764311 0 1111111 00 001111222110 0000000013333 358999999999999999
Q ss_pred hhhHhhhhhhc-chhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCC
Q psy16434 585 KMWALKYATSA-ANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGA 663 (745)
Q Consensus 585 kG~vL~~A~e~-a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~ 663 (745)
+|+++++...+ ..|++++.++++++++||||+++++.++++.++++++++.++++|++++++++++|++.|++||++++
T Consensus 202 ~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~ 281 (517)
T TIGR02342 202 EGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQK 281 (517)
T ss_pred eeEEEeccccccCCCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECC
Confidence 99999998877 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-----cHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCc
Q psy16434 664 KF-----GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRP 728 (745)
Q Consensus 664 ~I-----~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~ 728 (745)
+| +|++++||.++||++++++++++|+|||++|||+++++++++.+++||+|+.|++. +.++|.+
T Consensus 282 ~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~ 353 (517)
T TIGR02342 282 SILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIK 353 (517)
T ss_pred CcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEE
Confidence 98 99999999999999999999999999999999999999999999999999999954 6666644
No 60
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.94 E-value=8.2e-28 Score=277.13 Aligned_cols=286 Identities=21% Similarity=0.261 Sum_probs=227.5
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++-++..-|++++|| |++++|.++.+ ..+..++-+|. |..++++++.+++.+++
T Consensus 48 ~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTTt~viLa~~Ll-~~a~~li~~gi~p~~I~~g~~~a~~~~~~ 126 (536)
T TIGR02340 48 VTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDGTTSVVIIAAELL-KRADELIKRKVHPTSIISGYRLACKEAVK 126 (536)
T ss_pred EEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCChhhHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4455544333332223789999999999999999999 88889999988 77778888887 88999999999999999
Q ss_pred HHHHH-HHHH----H---HHHHhhc---cc--hhhHHHHHHHHHh--h----cCCccceeeecCCCcceeeccccccccc
Q psy16434 521 TFKGI-TKVF----V---KTLAENT---GV--KSNEVISKLYSAH--N----EGKKTYGFDINGENSSVIDAAEAGILDL 581 (745)
Q Consensus 521 vlk~~-~~~I----P---r~LaeNA---Gl--d~~~vlsKL~~~h--~----~g~~~~GIDl~~~~ikI~dm~g~gI~Ds 581 (745)
.++.. ...+ + ..++..+ -+ ...+.++++.... . +.....-+|++. +++.++.|+++.|+
T Consensus 127 ~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~--I~i~k~~G~s~~~s 204 (536)
T TIGR02340 127 YIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKA--VNILKAHGGSARES 204 (536)
T ss_pred HHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHH--eEEEEecCCCcccc
Confidence 99864 3211 1 1122211 00 0112233332110 0 000111134443 48999999999999
Q ss_pred ccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEe
Q psy16434 582 YLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVA 661 (745)
Q Consensus 582 ~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~ 661 (745)
.+++|+++++...+..|++++++++|+++++||++.+++.++++.++++.+++.+.++|++++++++++|+++|++||++
T Consensus 205 ~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~ 284 (536)
T TIGR02340 205 YLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLT 284 (536)
T ss_pred EEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEe
Confidence 99999999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCC------CCCCCcccCCceEe--cccccCccccc
Q psy16434 662 GAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVST------YIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 662 ~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l------~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
+++|+|.|+|||.++||++++|+++++|+|||++|||+++++++++ ..+.||+|+.|+++ +.++|.+-+.|
T Consensus 285 ~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~ 363 (536)
T TIGR02340 285 TGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGT 363 (536)
T ss_pred CCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcC
Confidence 9999999999999999999999999999999999999999999755 34459999999986 78887655433
No 61
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.94 E-value=9.5e-27 Score=245.38 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=141.9
Q ss_pred cceeecccccccccccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHH
Q psy16434 568 SSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQ 647 (745)
Q Consensus 568 ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~ 647 (745)
+++.+++|+++.|+.+++|+++++.+.+..|+++++||+|++++||||+++++. ++.+++++.++|+++++++
T Consensus 50 I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~Le~~~~~~-------~~~~~~~~~~~E~~~l~~~ 122 (261)
T cd03334 50 VKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLEYQRVEN-------KLLSLDPVILQEKEYLKNL 122 (261)
T ss_pred eEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEeeeeccccccC-------CHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999974 5789999999999999999
Q ss_pred HHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccC-CCCCCCCCcccCCceEe
Q psy16434 648 IKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL-VSTYIKMPSFCPAPPVQ 721 (745)
Q Consensus 648 V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssl-d~l~~~~LG~c~~~~~~ 721 (745)
+++|+++||||||++|+|+|+|+|||.++||+++++++++||+|||++|||++++++ +++.++.||+|+.|+++
T Consensus 123 v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~ 197 (261)
T cd03334 123 VSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVR 197 (261)
T ss_pred HHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHHHHHhCCEEecChhhhcCcccCcCcceEEEE
Confidence 999999999999999999999999999999999999999999999999999999995 48899999999999996
No 62
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.94 E-value=1e-27 Score=275.19 Aligned_cols=285 Identities=16% Similarity=0.171 Sum_probs=226.4
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++.+++.-|+.++|| |++++|.++.+ ..+..++-+|. |..++++++.+.+.+++
T Consensus 44 ~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDGTtt~vvLa~~ll-~~~~~li~~gi~p~~I~~g~~~a~~~~~~ 122 (515)
T cd03338 44 VIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDGTTSVVVLAGALL-SACESLLKKGIHPTVISESFQIAAKKAVE 122 (515)
T ss_pred EEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCCcchHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4455544333332223789999999999999999999 88888899887 67777777887 88999999999999999
Q ss_pred HHHHHHHHHH----HHH---Hhhccc---h--hhHHHHHHHHHhh--cCCcc--ceeeecCCCcceeecccccccccccc
Q psy16434 521 TFKGITKVFV----KTL---AENTGV---K--SNEVISKLYSAHN--EGKKT--YGFDINGENSSVIDAAEAGILDLYLT 584 (745)
Q Consensus 521 vlk~~~~~IP----r~L---aeNAGl---d--~~~vlsKL~~~h~--~g~~~--~GIDl~~~~ikI~dm~g~gI~Ds~lV 584 (745)
.++.....+. ..| +..+-- . ..+.++++....- -+... --+|++. +++.+..|+++.|+.++
T Consensus 123 ~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~--i~i~~~~Ggs~~ds~lv 200 (515)
T cd03338 123 ILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKD--IRIVKKLGGTIEDTELV 200 (515)
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHH--eEEEEecCCChhhceee
Confidence 9987654220 112 111100 0 1122222221100 00000 0234433 48888899999999999
Q ss_pred hhhHhhhhhhcch-hhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCC
Q psy16434 585 KMWALKYATSAAN-TILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGA 663 (745)
Q Consensus 585 kG~vL~~A~e~a~-mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~ 663 (745)
+|+++++...+.. |++.+.|+++++++||||+++++.+.++.++++++++.+.++|++++++++++|++.|++||++++
T Consensus 201 ~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~ 280 (515)
T cd03338 201 DGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQK 280 (515)
T ss_pred eeEEEeccccCcCCCCccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECC
Confidence 9999999888865 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-----cHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCcccc
Q psy16434 664 KF-----GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQT 731 (745)
Q Consensus 664 ~I-----~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~ 731 (745)
+| ++++++||.++||++++++++++|+|||++|||+++++++++..+.||+|+.|++. |+++|.+-+.
T Consensus 281 ~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~ 355 (515)
T cd03338 281 SILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITG 355 (515)
T ss_pred CcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEe
Confidence 98 99999999999999999999999999999999999999999999999999999996 5666654433
No 63
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.93 E-value=2e-27 Score=273.19 Aligned_cols=270 Identities=19% Similarity=0.220 Sum_probs=221.2
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH------H
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF------V 530 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I------P 530 (745)
+||.++++-+++..|++++|| |++++|.++.+ ..+..++-+|. |..++++++++.+.+++.++.....+ +
T Consensus 69 ~hP~a~ll~~~a~~q~~~~GDGTTt~vvLa~~Ll-~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~ 147 (522)
T TIGR02345 69 VHPAAKTLVDIAKSQDSEVGDGTTSVVILAGELL-KEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQ 147 (522)
T ss_pred cChHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH-HhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCccccc
Confidence 788899999999999999999 88888999988 77778888897 99999999999999999997754311 1
Q ss_pred -HH---HHhhcc---c--hhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcc---hh
Q psy16434 531 -KT---LAENTG---V--KSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAA---NT 598 (745)
Q Consensus 531 -r~---LaeNAG---l--d~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a---~m 598 (745)
.. ++..+- . ...+.++++....-.....-++|.+. +++.++.|+++.|+.+++|+++++...+. .|
T Consensus 148 ~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~--I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~ 225 (522)
T TIGR02345 148 REVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKL--IGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQ 225 (522)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhccCChhH--heEEeecCCCHHhcceecceEEecccCccccccC
Confidence 11 122110 0 01122222211100000000344433 48999999999999999999999876644 46
Q ss_pred hcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCC
Q psy16434 599 ILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGL 678 (745)
Q Consensus 599 il~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gI 678 (745)
++++++++|+++++|||+.+.+.+..+.++++++++++.+.|++++.+++++|+++|++||+++++|+|.+++||.++||
T Consensus 226 ~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I 305 (522)
T TIGR02345 226 PKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNI 305 (522)
T ss_pred CceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 679 MGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 679 l~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
+++++++++|++|+|++|||+++++++++.++.||+|+.|+++ +.++|.+-+.|
T Consensus 306 ~~~~~v~~~dl~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~ 361 (522)
T TIGR02345 306 FCAGRVSDEDLKRVVKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGC 361 (522)
T ss_pred EEEecCCHHHHHHHHHHhCCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcC
Confidence 9999999999999999999999999999999999999999985 77888654433
No 64
>KOG0360|consensus
Probab=99.93 E-value=4.9e-27 Score=253.90 Aligned_cols=277 Identities=23% Similarity=0.285 Sum_probs=225.6
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHH----HHHHH
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITK----VFVKT 532 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~----~IPr~ 532 (745)
+||.++.|..-...|+.++|| ++++++..+.+ .++..++..+. +..++.+++.+...+++.+..-+. .+-+.
T Consensus 71 ~HPa~KiLvelaq~qd~evgDgttsvviia~eLl-~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~ 149 (545)
T KOG0360|consen 71 EHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELL-KNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQ 149 (545)
T ss_pred cchHHHHHHHHHHhccccccCCceEEEEEEHHhh-hhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchH
Confidence 899999999999999999999 88888888877 77777777777 888999999999999998875443 11112
Q ss_pred HHhhc----------cch----hhHHHHHHHHHh-h--cCCccceeeecCCCcceeecccccccccccchhhHhhhhhhc
Q psy16434 533 LAENT----------GVK----SNEVISKLYSAH-N--EGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSA 595 (745)
Q Consensus 533 LaeNA----------Gld----~~~vlsKL~~~h-~--~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~ 595 (745)
...|. |.| ..-++..++... . ++...|-++ ++.|.+..|.+..||++++|+++++....
T Consensus 150 ~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~----~vnILkahG~s~~eS~l~~GyaLnc~~as 225 (545)
T KOG0360|consen 150 ILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPIN----SVNILKAHGKSQIESMLLPGYALNCSVAS 225 (545)
T ss_pred HHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceecccc----ceeEEecCCccchhheeecceeeeccHhh
Confidence 22221 222 111221221110 1 111122221 24889999999999999999999999999
Q ss_pred chhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHH
Q psy16434 596 ANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNK 675 (745)
Q Consensus 596 a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k 675 (745)
..|+++|.++||+++++.|+-.++.+.-.+.+++|+.++++.+.|....++.+++|++.|+|||+++|||||++++||.+
T Consensus 226 q~m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~ve 305 (545)
T KOG0360|consen 226 QMMPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVE 305 (545)
T ss_pred hccccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEeCCHHHHHHHHHHhCCeecccCCC------CCCCCCcccCCceEe--ccccc-----CccccccccccccCC
Q psy16434 676 YGLMGVRLNSKFDLRRLCKAVNATALPRLVS------TYIKMPSFCPAPPVQ--GRERD-----RPAQTCKYLHQNALD 741 (745)
Q Consensus 676 ~gIl~ir~v~k~dLeRIaraTGA~ivssld~------l~~~~LG~c~~~~~~--~~e~~-----~~~~~~~~~~~~~~~ 741 (745)
+|+|+|||++++||+||+++|||++++++.+ +.+..+|+|+.|.++ +++-+ +++.-|++|-.||=|
T Consensus 306 agamAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~~aSiILrgaNd 384 (545)
T KOG0360|consen 306 AGAMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKATSASIILRGAND 384 (545)
T ss_pred cchhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCccceeeEEEecCCc
Confidence 9999999999999999999999999999984 455679999999774 44444 567789998887755
No 65
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.92 E-value=4.2e-26 Score=262.58 Aligned_cols=281 Identities=31% Similarity=0.481 Sum_probs=226.7
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.++|..-...+.-.-+||.++++-++++-|++++|| |++++|.++.+ ..+..++-.|. |..++++++++++.+++
T Consensus 54 ~~ITnDG~tIlk~i~~~hP~akll~e~a~sqd~~~GDGTTt~vvLa~~Ll-~~~~~li~~gi~p~~Ii~g~~~a~~~~~~ 132 (531)
T TIGR02346 54 LFVTNDAATILRELEVQHPAAKLLVMASEMQENEIGDGTNLVIVLAGELL-DKAEELIRMGLHPSEIIKGYEQALKKAME 132 (531)
T ss_pred EEEECcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhhHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4455544333333233789999999999999999999 88889999887 77778888887 88999999999999999
Q ss_pred HHHHHHH-HH-----H---HHHHhhc--c--chhhHHHHHHHH-----HhhcCCccceeeecCCCcceeecccccccccc
Q psy16434 521 TFKGITK-VF-----V---KTLAENT--G--VKSNEVISKLYS-----AHNEGKKTYGFDINGENSSVIDAAEAGILDLY 582 (745)
Q Consensus 521 vlk~~~~-~I-----P---r~LaeNA--G--ld~~~vlsKL~~-----~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~ 582 (745)
.++.... .+ . ..+++.+ + ......++++.. ...++.. .+|++. +++.++.|+++.|+.
T Consensus 133 ~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~~~~--~~~~~~--I~i~ki~G~s~~ds~ 208 (531)
T TIGR02346 133 VLEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQLVAKACSTVMPKNPE--NFNVDN--IRVSKIMGGSISNSE 208 (531)
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHhhcCCC--cCChhH--eeEEEecCCChhhce
Confidence 9976542 11 1 1121111 0 001233333321 1111111 244443 489999999999999
Q ss_pred cchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeC
Q psy16434 583 LTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662 (745)
Q Consensus 583 lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~ 662 (745)
+++|+++++... .|++++.|++++++++||++.++++++++.+++++++..+.+.|++++++++++|++.|++||+++
T Consensus 209 li~Gi~~~~~~~--~~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~ 286 (531)
T TIGR02346 209 VLKGMVFNREAE--GSVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTG 286 (531)
T ss_pred eEeeeEEeccCC--CCceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEC
Confidence 999999998743 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCcccc
Q psy16434 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQT 731 (745)
Q Consensus 663 ~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~ 731 (745)
++|+|.+++||.++||++++++++.+|+|||++|||+++++++++..++||+|+.|++. |.++|.+-+.
T Consensus 287 ~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~ 357 (531)
T TIGR02346 287 GSVGDMALHYCEKYNIMVLKIPSKFELRRLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQ 357 (531)
T ss_pred CCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHHHCCEEecccccCCHhHccccceEEEEEECCEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999996 6677754443
No 66
>KOG0363|consensus
Probab=99.92 E-value=1.1e-25 Score=236.85 Aligned_cols=274 Identities=18% Similarity=0.236 Sum_probs=240.1
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHH-------HH
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITK-------VF 529 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~-------~I 529 (745)
++|+++.|...+++|+.++|| |++++|+++++ ..+..++-.-. |+.|+.+++.+..-|++++.+... .+
T Consensus 72 DnpaAkvLv~~S~vQD~EvGDGTTSV~vlaaeLl-reAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kf 150 (527)
T KOG0363|consen 72 DNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELL-REAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKF 150 (527)
T ss_pred CCchhhheeccccccccccCCCceehHHHHHHHH-HHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHH
Confidence 789999999999999999999 99999999987 77777666555 999999999999999999987654 22
Q ss_pred HHHHHhhccchhhHHHHHHHHHhhcCCccceeeecC--------CCcceeecccccccccccchhhHhhhhhhcchhhcc
Q psy16434 530 VKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDING--------ENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601 (745)
Q Consensus 530 Pr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~--------~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~ 601 (745)
-..|..- ..+.+.+|+.++|.+.++.+.+|+.. +.++|.+..|+...||++=.|+.+++.+.. ..|++
T Consensus 151 r~DLl~i---arTTL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv-~qpkr 226 (527)
T KOG0363|consen 151 REDLLKI---ARTTLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGV-NQPKR 226 (527)
T ss_pred HHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccccccccceeccccCC-CCccc
Confidence 3344443 37889999999988877777666322 236999999999999999999999988765 67999
Q ss_pred cccceeeeeccCcccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeE
Q psy16434 602 QTKAKIAVYTCPVDIATTET-KGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMG 680 (745)
Q Consensus 602 IDn~kIlll~~~Le~~k~e~-~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ 680 (745)
+.|++|++-+.|++..|.+. .+.|.+++..++.++...|++.++++|++|.+.|+|+.++++-|.++.+++|..+|||+
T Consensus 227 iena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~a 306 (527)
T KOG0363|consen 227 IENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMA 306 (527)
T ss_pred ccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcce
Confidence 99999999999999999996 79999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccC------ccccccccccc
Q psy16434 681 VRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDR------PAQTCKYLHQN 738 (745)
Q Consensus 681 ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~------~~~~~~~~~~~ 738 (745)
|.+...+-+||++-+||+.|++.||.+...+||+|..+++. |++|.- .-+-|++.-..
T Consensus 307 IEHADFdGiERLalvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrG 372 (527)
T KOG0363|consen 307 IEHADFDGIERLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRG 372 (527)
T ss_pred eecccchhHHHHhhcccceeeeccCCcchhccccchhhHHHhcCccceeeecccccccceEEEEec
Confidence 99999999999999999999999999999999999999984 888762 23467765443
No 67
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=8.5e-24 Score=241.50 Aligned_cols=267 Identities=22% Similarity=0.211 Sum_probs=225.2
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH--H---
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVFV--K--- 531 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~IP--r--- 531 (745)
+||.++++-.+++-|+++.|| |++++|+++.+ ..+..++-+|. |..|.++++.+.+.|+..++.....+- .
T Consensus 63 ehp~akll~eva~~qd~e~GDGTTtavVLa~all-~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~ 141 (524)
T COG0459 63 EHPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALL-KEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEEL 141 (524)
T ss_pred cCchhHHHHHHHHHHHHHhcCchHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhh
Confidence 799999999999999999999 89999999988 77888888998 889999999999999999998765211 0
Q ss_pred --HHHhhccc--hhhHHHHHHHHHhhcCCcccee---eecCCCcceeecccccccccccchhhHhhh-hhhcchhh-ccc
Q psy16434 532 --TLAENTGV--KSNEVISKLYSAHNEGKKTYGF---DINGENSSVIDAAEAGILDLYLTKMWALKY-ATSAANTI-LQQ 602 (745)
Q Consensus 532 --~LaeNAGl--d~~~vlsKL~~~h~~g~~~~GI---Dl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~-A~e~a~mi-l~I 602 (745)
....-++. ...+.+..+....- ...|- |++. +.+.+..++...|+.+++|+++++ ..++..|+ .++
T Consensus 142 ~~~~t~v~sk~~~~~~~i~~lv~~Av---~~v~~~~~d~~~--i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~ 216 (524)
T COG0459 142 KIAITSVASKSANSDEEIGELVVEAV---EKVGKEQSDLDG--IIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRL 216 (524)
T ss_pred hhhhheeeeeeccChHHHHHHHHHHH---HHhcccccccCC--eEEEEecCCCccceEEEeeEEecCCccCCCCCCcccc
Confidence 00000000 01123333322110 00111 3333 488899999999999999999999 88899999 899
Q ss_pred ccceeeeeccCcccccccccceEEecCHHHHHHHHHHHH-HHHHHHHHHHHHcCCc-EEEeCCcccHHHHHHHHHcCCeE
Q psy16434 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEE-NQLEEQIKAIADTGAN-VVVAGAKFGDMALHYLNKYGLMG 680 (745)
Q Consensus 603 Dn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~-~~i~~~V~~I~~~gvn-VVl~~~~I~d~al~~L~k~gIl~ 680 (745)
+||+|++++++|++.+++...++.++++.+|+.|.++|+ +.+..+|+++++.|+| |+++++||+|+++|||.+.+|++
T Consensus 217 e~~~Ili~d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt 296 (524)
T COG0459 217 ENPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILT 296 (524)
T ss_pred ccceEEEEccccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhccee
Confidence 999999999999999999999999999999999999999 9999999999999999 99999999999999999999999
Q ss_pred EEeCCHHHH-HHHHHHhCCeecccCCCCCCCCCcc--cCCceEe--cccccCccccc
Q psy16434 681 VRLNSKFDL-RRLCKAVNATALPRLVSTYIKMPSF--CPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 681 ir~v~k~dL-eRIaraTGA~ivssld~l~~~~LG~--c~~~~~~--~~e~~~~~~~~ 732 (745)
+++++++|+ +||++++||++++.+++++...+|. |+.+++. +++++.+.+.|
T Consensus 297 ~~~v~~~dl~~~l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~ 353 (524)
T COG0459 297 GRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQER 353 (524)
T ss_pred cceecchhhHHHHHHccCceEEeecccCceeecCccccceEEEeeccchhhhhhhhh
Confidence 999999999 8999999999999999999999999 9999997 77777655544
No 68
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.88 E-value=9.7e-24 Score=240.62 Aligned_cols=257 Identities=15% Similarity=0.135 Sum_probs=198.7
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++.+++.-|++++|| |++++|+++.+ ..+..++-.|. |..++++++++.+.++.
T Consensus 48 ~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~GDGTTt~vvLa~~Ll-~~a~~li~~gi~P~~I~~g~~~a~~~~~~ 126 (484)
T cd03342 48 IKLTKDGNVLLSEMQIQHPTASMIARAATAQDDITGDGTTSNVLLIGELL-KQAERYIQEGVHPRIITEGFELAKNKALK 126 (484)
T ss_pred EEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHhCCChhhHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 4445443233332223789999999999999999999 88889999887 66777777787 88999999999999999
Q ss_pred HHHHHHHHHH-----HHH---Hhhccc-h----hhHHHHHHHHHhh--cCCccceeeecCCCcceeecccccccccccch
Q psy16434 521 TFKGITKVFV-----KTL---AENTGV-K----SNEVISKLYSAHN--EGKKTYGFDINGENSSVIDAAEAGILDLYLTK 585 (745)
Q Consensus 521 vlk~~~~~IP-----r~L---aeNAGl-d----~~~vlsKL~~~h~--~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVk 585 (745)
.++.....+. ..| +.-+-- . ..+.++++....- -+...--+|.+. +++.++.|+++.|+.+++
T Consensus 127 ~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~--I~i~ki~ggs~~ds~~i~ 204 (484)
T cd03342 127 FLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHM--VEIMQMQHKSDSDTKLIR 204 (484)
T ss_pred HHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcCCccChhH--eEEEEecCCChhhceEEe
Confidence 9987654221 112 111100 0 0122222211100 000000234433 489999999999999999
Q ss_pred hhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcc
Q psy16434 586 MWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKF 665 (745)
Q Consensus 586 G~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I 665 (745)
|+++++...+..|++++.|++|+++++||++++++.+.++.++ ||+++++|
T Consensus 205 G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~~~~~~~~~~~-----------------------------lvi~~~~I 255 (484)
T cd03342 205 GLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYS-----------------------------VVINQKGI 255 (484)
T ss_pred eEEEecCCCCCCCCccccCceEEEEeCCCCCCccccCcEEEEE-----------------------------EEEeCCCc
Confidence 9999999888999999999999999999999999988777654 99999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 666 GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 666 ~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
+|.|++||.++||+++++++++||+|||++|||+++++++++.+++||+|+.|+++ |.++|.+-+.|
T Consensus 256 ~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~ 324 (484)
T cd03342 256 DPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGV 324 (484)
T ss_pred cHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEEecccccCChhhCcccceEEEEEECCeEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999875 78888765544
No 69
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.87 E-value=1.1e-23 Score=239.02 Aligned_cols=282 Identities=23% Similarity=0.331 Sum_probs=226.7
Q ss_pred eEEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHH
Q psy16434 443 KIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGV 519 (745)
Q Consensus 443 kIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL 519 (745)
++.+++......+.-.-+||.++.+-++..-++.++|| +++++|.++.+ ..+..++-+|. +..+.+.++.+++.++
T Consensus 24 ~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll-~~~~~li~~gi~p~~I~~~~~~~~~~~~ 102 (485)
T PF00118_consen 24 KIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELL-RNALKLIKKGIHPQEIIRGLQEALKIIL 102 (485)
T ss_dssp SEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHH-HHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred CeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchh-hhhhhhhhccccccchhhhhhhhhhhhh
Confidence 45555544333332222788999999999999999999 88888888877 67777777787 8899999999999999
Q ss_pred HHHHHHHHHH------HHHHHhhc---cc--hhhHHHHHHHHHhhcC-CccceeeecCCCcceeecccccccccccchhh
Q psy16434 520 NTFKGITKVF------VKTLAENT---GV--KSNEVISKLYSAHNEG-KKTYGFDINGENSSVIDAAEAGILDLYLTKMW 587 (745)
Q Consensus 520 ~vlk~~~~~I------Pr~LaeNA---Gl--d~~~vlsKL~~~h~~g-~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~ 587 (745)
+.+......+ -..++..+ .+ ...+.++++....... ... .|+... ++.++.++.+.|+.+++|+
T Consensus 103 ~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~--~~~~~i--~i~~i~g~~~~dS~li~Gi 178 (485)
T PF00118_consen 103 EYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSN--FDLDNI--KIIKIPGGSISDSELINGI 178 (485)
T ss_dssp HHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTT--HHGGGE--EEEEEESSSSGGEEEESEE
T ss_pred hhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhccc--ccccch--hhhhhccccccccccccce
Confidence 9997552100 01222211 10 1113333332211100 000 344444 8899999999999999999
Q ss_pred HhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccH
Q psy16434 588 ALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGD 667 (745)
Q Consensus 588 vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d 667 (745)
++++...+..|+++++++++++++++|++.+. .+.++.++++++++.+.++|++++++++++|.+.|++||+++++|++
T Consensus 179 v~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~ 257 (485)
T PF00118_consen 179 VLDKGFSSPNMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDD 257 (485)
T ss_dssp EESSSBSSTTSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTH
T ss_pred eeeccccccccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeeccccc
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccc
Q psy16434 668 MALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQ 730 (745)
Q Consensus 668 ~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~ 730 (745)
.++++|.++||++++++++++|+|||++|||+++++++++.++.+|+|+.+++. +.++|.+-+
T Consensus 258 ~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~ 322 (485)
T PF00118_consen 258 EALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEEREIGNKKYIFIE 322 (485)
T ss_dssp HHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEEEETSSEEEEEE
T ss_pred ccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhcccccccccccc
Confidence 999999999999999999999999999999999999999998889999999764 777776644
No 70
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.85 E-value=1.7e-22 Score=230.34 Aligned_cols=230 Identities=20% Similarity=0.251 Sum_probs=181.3
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH---H---
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF---V--- 530 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I---P--- 530 (745)
+||.++++.++.+.|++++|| |++++|.++.+ .++..++-+|. |..|+++++++++.+++.++.....+ .
T Consensus 68 ~hP~a~ll~~~a~~q~~~~GDGTtt~vvL~~~Ll-~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~ 146 (480)
T cd03337 68 AHPAAKSMIELSRTQDEEVGDGTTSVIILAGEIL-AVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQ 146 (480)
T ss_pred cChHHHHHHHHHHhHHHHhCCCcchhHhhHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHH
Confidence 789999999999999999999 88899999988 77878888897 89999999999999999998765311 0
Q ss_pred -HHHHhhc---cc--hhhHHHHHHHHHhhc--CCccce----eeecCCCcceeecccccccccccchhhHhhhhhhcchh
Q psy16434 531 -KTLAENT---GV--KSNEVISKLYSAHNE--GKKTYG----FDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANT 598 (745)
Q Consensus 531 -r~LaeNA---Gl--d~~~vlsKL~~~h~~--g~~~~G----IDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~m 598 (745)
..++..+ -. ...+.++++...... +...-| +|++. .+++.+++|+++.|+.+++|+++++.+.+..|
T Consensus 147 l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~-~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m 225 (480)
T cd03337 147 MLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKR-YAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKM 225 (480)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhh-ceEEEEecCCCHHhcccccceEEeccCCCCCC
Confidence 1122211 00 011233333211100 000001 33322 24789999999999999999999999999999
Q ss_pred hcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCC
Q psy16434 599 ILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGL 678 (745)
Q Consensus 599 il~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gI 678 (745)
+.++++++|++++||||+ ||+++++|+|.|++||.++||
T Consensus 226 ~~~~~n~kIlll~~~Le~-----------------------------------------lvi~~k~I~d~al~~L~~~~I 264 (480)
T cd03337 226 RRRIENPRIVLLDCPLEY-----------------------------------------LVITEKGVSDLAQHYLVKAGI 264 (480)
T ss_pred CcEecCCCEEEEecCcce-----------------------------------------EEEeCCCccHHHHHHHHHCCc
Confidence 999999999999999988 999999999999999999999
Q ss_pred eEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcc-cCCceEe--cccccCccccc
Q psy16434 679 MGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSF-CPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 679 l~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~-c~~~~~~--~~e~~~~~~~~ 732 (745)
++++++++++|+|||++|||+++++++++.++.||+ |+.|+++ +.++|.+-..|
T Consensus 265 ~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~ 321 (480)
T cd03337 265 TALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITEC 321 (480)
T ss_pred EEEEeCCHHHHHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcC
Confidence 999999999999999999999999999999999999 6676765 66666544333
No 71
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.84 E-value=1.7e-20 Score=191.29 Aligned_cols=162 Identities=25% Similarity=0.422 Sum_probs=144.1
Q ss_pred ccccceeeeccccccCC-ChhhHHHHHHHHHHhhcCCCCCCCCccceEEEEccCCCcccceeEeeEEEeecccC--Ccee
Q psy16434 362 ENVTKGIKSAIMSKQYG-NEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVEG--DITK 438 (745)
Q Consensus 362 ~~L~~va~tsl~sK~~~-~~~~ls~LivdAv~~v~~~~~~~~dl~~I~I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~ 438 (745)
+.|.++|+|+++||+ + +.+.|++++++|+..++++. +.++.++|+|+++.||++.||++++|++|++++.+ ||++
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~-~~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~ 79 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDN-RMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKR 79 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccC-CCCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCCeE
Confidence 468899999999999 6 58999999999999998753 25777899999999999999999999999999987 4899
Q ss_pred eeCceEEEeccCCCcc-------cccc-------C---------------------------CCCCcccccccccEEEEE
Q psy16434 439 QTKAKIAVYTCPVDIA-------TTET-------K---------------------------TPPAASELGYADSVAVDE 477 (745)
Q Consensus 439 i~nakIlil~~~Le~~-------k~e~-------k---------------------------~~p~a~~LG~a~~vq~~e 477 (745)
++||+|++++++||+. .... + +++++..||+|+++++.+
T Consensus 80 ~~n~~Ill~~~~le~vii~~~~I~~~al~~l~~~~I~~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~ 159 (209)
T cd03333 80 LENAKILLLDCPLEYVVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETK 159 (209)
T ss_pred cCCCcEEEEeCCeeEEEEecCcccHHHHHHHHHCCCEEEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEE
Confidence 9999999999999971 1110 0 677888999999999999
Q ss_pred ECCeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHH
Q psy16434 478 LGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGIT 526 (745)
Q Consensus 478 iGdtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~ 526 (745)
+|++++++|.++.. +.++||++||+++.+++|++|+++||++++++++
T Consensus 160 ~~~~~~~~~~~~~~-~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~ 207 (209)
T cd03333 160 IGEEKLTFIEGCKG-GKAATILLRGATEVELDEVKRSLHDALCAVRAAV 207 (209)
T ss_pred ECCeEEEEEEcCCC-CCEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998875 7899999999999999999999999999999876
No 72
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.81 E-value=4.7e-21 Score=218.03 Aligned_cols=246 Identities=28% Similarity=0.453 Sum_probs=186.6
Q ss_pred EEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHH
Q psy16434 444 IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVN 520 (745)
Q Consensus 444 Ilil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~ 520 (745)
+.+++..-...+.-.-+||.++++-++..-|++++|| |++++|.++.+ .++..++-+|. |..++++++++.+.+++
T Consensus 44 ~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTTt~vvL~~~Ll-~~~~~li~~gi~p~~Ii~g~~~a~~~~~~ 122 (472)
T cd03341 44 LFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTNLVVVLAGELL-EKAEELLRMGLHPSEIIEGYEKALKKALE 122 (472)
T ss_pred EEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhhHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4445443233222222788899999999999999999 88888899887 77777777887 88999999999999999
Q ss_pred HHHHHHHH-H--------HHHHHhhc---c-chhhHHHHHHHHHhh--cCCcc-ceeeecCCCcceeecccccccccccc
Q psy16434 521 TFKGITKV-F--------VKTLAENT---G-VKSNEVISKLYSAHN--EGKKT-YGFDINGENSSVIDAAEAGILDLYLT 584 (745)
Q Consensus 521 vlk~~~~~-I--------Pr~LaeNA---G-ld~~~vlsKL~~~h~--~g~~~-~GIDl~~~~ikI~dm~g~gI~Ds~lV 584 (745)
.++..... + -..+++.+ - ......++++....- -+... --+|++. +++.++.|+++.|+.++
T Consensus 123 ~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~--i~i~ki~Gg~~~ds~lv 200 (472)
T cd03341 123 ILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDN--IRVVKILGGSLEDSKVV 200 (472)
T ss_pred HHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhH--eEEEEecCCCcccceEE
Confidence 99776421 1 01122211 0 001223333321100 00000 0134433 48999999999999999
Q ss_pred hhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCc
Q psy16434 585 KMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664 (745)
Q Consensus 585 kG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~ 664 (745)
+|+++++..+ .+++++++++++++++|||+ |++||+++++
T Consensus 201 ~Giv~~~~~~--~~~~~~~n~~Ili~~~~Le~--------------------------------------g~~lvi~~~~ 240 (472)
T cd03341 201 RGMVFKREPE--GSVKRVKKAKVAVFSCPFDI--------------------------------------GVNVIVAGGS 240 (472)
T ss_pred eeEEEccccC--CCceeccCCcEEEEeccccC--------------------------------------CCeEEEECCC
Confidence 9999986543 45689999999999999998 9999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 665 FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 665 I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
|+|.+++||+++||++++++++++|+|||++|||+++++++++.++.||+|+.|++. |.++|.+-+.|
T Consensus 241 I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~ 310 (472)
T cd03341 241 VGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQN 310 (472)
T ss_pred CCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCHhHCCCceEEEEEEECCeeEEEEEcc
Confidence 999999999999999999999999999999999999999999999999999999996 67777655444
No 73
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.81 E-value=1.1e-20 Score=214.71 Aligned_cols=244 Identities=24% Similarity=0.262 Sum_probs=189.8
Q ss_pred eEEEeccCCCccccccCCCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHH
Q psy16434 443 KIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGV 519 (745)
Q Consensus 443 kIlil~~~Le~~k~e~k~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL 519 (745)
++.+++..-...+.-.-+||.++.+-++.+-++.++|| +++++|.++.+ ..+..++-+|. |..++++++++++.++
T Consensus 43 ~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGTtt~viL~~~ll-~~~~~li~~gi~p~~I~~g~~~a~~~~~ 121 (464)
T cd00309 43 DPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGTTTVVVLAGELL-KEAEKLLAAGIHPTEIIRGYEKAVEKAL 121 (464)
T ss_pred CeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCchhHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 34455544333332222799999999999999999999 88888999887 67777777786 8899999999999999
Q ss_pred HHHHHHHHH--H-----HHHHHhhccch------hhHHHHHHHHHhhcCCcccee---eecCCCcceeeccccccccccc
Q psy16434 520 NTFKGITKV--F-----VKTLAENTGVK------SNEVISKLYSAHNEGKKTYGF---DINGENSSVIDAAEAGILDLYL 583 (745)
Q Consensus 520 ~vlk~~~~~--I-----Pr~LaeNAGld------~~~vlsKL~~~h~~g~~~~GI---Dl~~~~ikI~dm~g~gI~Ds~l 583 (745)
+.+++.... . -..++..+ +. ..+.++++....-. ..+- ..+.+.+++.+..++.+.|+.+
T Consensus 122 ~~L~~~~~~~~~~~~~~l~~ia~ts-l~sK~~~~~~~~l~~l~~~Ai~---~v~~~~~~~~~~~I~i~k~~gg~~~ds~l 197 (464)
T cd00309 122 EILKEIAVPIDVEDREELLKVATTS-LNSKLVSGGDDFLGELVVDAVL---KVGKENGDVDLGVIRVEKKKGGSLEDSEL 197 (464)
T ss_pred HHHHHhcCccCCCCHHHHHHHhHhc-ccccccccchHHHHHHHHHHHH---HhccccCccccceEEEEecCCCCccccee
Confidence 999875531 1 12222211 11 12222222211100 0111 1223446899999999999999
Q ss_pred chhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCC
Q psy16434 584 TKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGA 663 (745)
Q Consensus 584 VkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~ 663 (745)
+.|+++++...+..|+..+++++|+++++|||+ ||++++
T Consensus 198 i~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~-----------------------------------------lIi~~~ 236 (464)
T cd00309 198 VVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY-----------------------------------------VVIAEK 236 (464)
T ss_pred eeeEEEecCCCCCCCceeecCceEEEEecCcce-----------------------------------------EEecCC
Confidence 999999999999999999999999999999998 999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cccccCccccc
Q psy16434 664 KFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GRERDRPAQTC 732 (745)
Q Consensus 664 ~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~e~~~~~~~~ 732 (745)
+|+|.|++||.++||++++++++++|+|||++|||+++++++++..+.||+|+.|++. |.++|++-..|
T Consensus 237 ~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~ 307 (464)
T cd00309 237 GIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGC 307 (464)
T ss_pred CcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCcccCccccEEEEEEEcCeeEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999996 67677554433
No 74
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.81 E-value=3.7e-19 Score=187.90 Aligned_cols=147 Identities=24% Similarity=0.333 Sum_probs=131.5
Q ss_pred ChhhHHHHHHHHHHhhcCCC--CCCCCcc-ceEEEEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCc
Q psy16434 379 NEDFLTDLITKACVSILPDG--SSSFNVD-NVRITKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDI 453 (745)
Q Consensus 379 ~~~~ls~LivdAv~~v~~~~--~~~~dl~-~I~I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~ 453 (745)
+.++|++|+++|+..+.++. ++.+|++ +|+|.+++||++.||++++|++|++.+.+ ||++++||||++++++||+
T Consensus 19 ~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~Le~ 98 (261)
T cd03334 19 WLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLEY 98 (261)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEeeeecc
Confidence 36899999999999997542 2468876 59999999999999999999999999876 6999999999999999999
Q ss_pred cccccC--------------------------------------------------------------------------
Q psy16434 454 ATTETK-------------------------------------------------------------------------- 459 (745)
Q Consensus 454 ~k~e~k-------------------------------------------------------------------------- 459 (745)
.+++.+
T Consensus 99 ~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rIa~~tGa~ii~~ 178 (261)
T cd03334 99 QRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERISRCTGADIISS 178 (261)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHHHHHhCCEEecC
Confidence 886532
Q ss_pred --CCCCcccccccccEEEEEECC-----eeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHH
Q psy16434 460 --TPPAASELGYADSVAVDELGD-----TAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGIT 526 (745)
Q Consensus 460 --~~p~a~~LG~a~~vq~~eiGd-----tsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~ 526 (745)
++++++.||+|+.++++++|+ +++++|+|+.. ++++||++||+|+.+++|++|+++||+++++++.
T Consensus 179 i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~-~~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~ 251 (261)
T cd03334 179 MDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPK-ELGCTILLRGGDLEELKKVKRVVEFMVFAAYHLK 251 (261)
T ss_pred hhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCC-CceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999996 79999999976 7899999999999999999999999999999865
No 75
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.75 E-value=1.1e-18 Score=201.53 Aligned_cols=234 Identities=16% Similarity=0.162 Sum_probs=177.5
Q ss_pred CCC----CcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH---
Q psy16434 460 TPP----AASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF--- 529 (745)
Q Consensus 460 ~~p----~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I--- 529 (745)
+|| .++++.++++.|++++|| |++++|+|+.+ ..+..++-.|. |..|+++++++++.++..|+.....+
T Consensus 62 ~hp~~~~~a~ll~~~a~~qd~e~GDGTTtvviLageLL-~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~ 140 (542)
T PRK12849 62 EDPFENLGAQLVKEVASKTNDVAGDGTTTATVLAQALV-QEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGS 140 (542)
T ss_pred CCccHhHHHHHHHHHHHhcCCccCCCccHHHHHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 677 789999999999999999 88889999988 77778888887 88999999999999999998765311
Q ss_pred --HHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccc-cccchhhHhhhhhhcch-------hh
Q psy16434 530 --VKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILD-LYLTKMWALKYATSAAN-------TI 599 (745)
Q Consensus 530 --Pr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~D-s~lVkG~vL~~A~e~a~-------mi 599 (745)
-..++..+. ...+.++++....- ..+|-+ +.+.+. .++++.| +.+++|+++++...+.. |+
T Consensus 141 ~~l~~va~ts~-~~~~~l~~lv~~Av---~~v~~~---g~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~ 211 (542)
T PRK12849 141 EEIAQVATISA-NGDEEIGELIAEAM---EKVGKD---GVITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERME 211 (542)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHH---HHhccC---CcEeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCce
Confidence 122333222 12233333322110 011111 111221 4666766 79999999987777663 57
Q ss_pred cccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHc---
Q psy16434 600 LQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKY--- 676 (745)
Q Consensus 600 l~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~--- 676 (745)
..+++++|+++++.+ +++++++ +++++|.+.|++|||++++|+|.|+++|.++
T Consensus 212 ~~~~n~~Ili~d~~i-------------~~~~~~~-----------~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~ 267 (542)
T PRK12849 212 AVLEDPLILLTDKKI-------------SSLQDLL-----------PLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLR 267 (542)
T ss_pred EEeeCcEEEeecCCc-------------CCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhh
Confidence 889999999999954 3444443 3688999999999999999999999999999
Q ss_pred ---CCeEEEeCC-----HHHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceEecccccCc
Q psy16434 677 ---GLMGVRLNS-----KFDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPVQGRERDRP 728 (745)
Q Consensus 677 ---gIl~ir~v~-----k~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~~~~e~~~~ 728 (745)
||+++++++ +++|+|||++|||++++ +++++.+++||+|+.|++.. ++|..
T Consensus 268 ~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~-~~~~~ 331 (542)
T PRK12849 268 GGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK-DNTTI 331 (542)
T ss_pred ccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee-eeEEE
Confidence 999999998 55699999999999999 68999999999999999853 44443
No 76
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.75 E-value=1.6e-18 Score=199.30 Aligned_cols=238 Identities=18% Similarity=0.164 Sum_probs=182.9
Q ss_pred CCC----CcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH---
Q psy16434 460 TPP----AASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF--- 529 (745)
Q Consensus 460 ~~p----~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I--- 529 (745)
+|| .++.+-+++..|++++|| |++++|+++.+ ..+..++-.|. |..++++++.+.+.++..|+.....+
T Consensus 60 ~hp~~~~~a~ll~~~a~~qd~e~GDGTTtvviLa~~Ll-~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~ 138 (520)
T cd03344 60 EDPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAII-KEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTK 138 (520)
T ss_pred CCcchhHHHHHHHHHHhhhccccCCCcchHHHHHHHHH-HHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 677 788999999999999999 88889999988 77777788887 88999999999999999998765311
Q ss_pred --HHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccc-cccchhhHhhhhhhcch-------hh
Q psy16434 530 --VKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILD-LYLTKMWALKYATSAAN-------TI 599 (745)
Q Consensus 530 --Pr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~D-s~lVkG~vL~~A~e~a~-------mi 599 (745)
-..++..+- ...+.++++....-. .+|-+ + .+.-..++++.| +.+++|+++++...+.. |+
T Consensus 139 ~~l~~va~ts~-~~~~~l~~lv~~A~~---~v~~~---~--~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~ 209 (520)
T cd03344 139 EEIAQVATISA-NGDEEIGELIAEAME---KVGKD---G--VITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKME 209 (520)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHH---HhccC---C--cEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCe
Confidence 122333221 223344444322110 11211 2 122246788888 79999999998877665 44
Q ss_pred cccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCC-
Q psy16434 600 LQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGL- 678 (745)
Q Consensus 600 l~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gI- 678 (745)
.++++++|++++++| ++++++.+ ++++|.+.|++|||++++|+|.|+++|.++||
T Consensus 210 ~~~~n~~Ili~d~~l-------------~~~~~l~~-----------~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~ 265 (520)
T cd03344 210 VELENPYILLTDKKI-------------SSIQELLP-----------ILELVAKAGRPLLIIAEDVEGEALATLVVNKLR 265 (520)
T ss_pred EEeeCCEEEEECCCC-------------CCHHHHHH-----------HHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCc
Confidence 678999999999996 44544333 57889999999999999999999999999999
Q ss_pred -----eEEEeC-----CHHHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceEecccccCccccc
Q psy16434 679 -----MGVRLN-----SKFDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPVQGRERDRPAQTC 732 (745)
Q Consensus 679 -----l~ir~v-----~k~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~~~~e~~~~~~~~ 732 (745)
++++++ ++++|+|||++|||++++ +++++..++||+|+.|++.. ++|.+-..|
T Consensus 266 ~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~-~~~~~i~~~ 333 (520)
T cd03344 266 GGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK-DDTTIIGGA 333 (520)
T ss_pred cCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee-ceEEEEeCC
Confidence 998877 899999999999999999 88899888999999999865 555544444
No 77
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.74 E-value=1.9e-18 Score=199.41 Aligned_cols=239 Identities=17% Similarity=0.165 Sum_probs=184.2
Q ss_pred CCC----CcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH--H
Q psy16434 460 TPP----AASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF--V 530 (745)
Q Consensus 460 ~~p----~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I--P 530 (745)
+|| .++++.+++..|++++|| |++++|.++.+ ..+..++-.|. |..|+++++++++.++..|+.....+ .
T Consensus 62 ~hp~~~~~akll~e~a~~qd~e~GDGTTtvviLa~~LL-~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~ 140 (542)
T PRK00013 62 EDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIV-REGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDK 140 (542)
T ss_pred CCchhhHHHHHHHHHHHhcCcccCCccchHHHHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 677 689999999999999999 88889999988 77778888887 78999999999999999998765311 0
Q ss_pred ---HHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcch-------hhc
Q psy16434 531 ---KTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAAN-------TIL 600 (745)
Q Consensus 531 ---r~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~-------mil 600 (745)
..++..+. ...+.++++....-. .+|-+ +.+.+.+..+ ...|+.+++|+++++...+.. |+.
T Consensus 141 ~~l~~va~ts~-~~~~~ls~lv~~Av~---~v~~~---g~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~ 212 (542)
T PRK00013 141 EEIAQVATISA-NGDEEIGKLIAEAME---KVGKE---GVITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEA 212 (542)
T ss_pred HHHHHHHHhcc-cchHHHHHHHHHHHH---HhCcC---CcEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeE
Confidence 22222221 122333443222110 11211 1235555555 777999999999998877774 478
Q ss_pred ccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcC---
Q psy16434 601 QQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYG--- 677 (745)
Q Consensus 601 ~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~g--- 677 (745)
.++|++|+++++++ ++++++. +++++|++.|++|||++++|+|.|+++|.+++
T Consensus 213 ~~~n~~Ilv~d~~i-------------~~~~~l~-----------~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g 268 (542)
T PRK00013 213 ELENPYILITDKKI-------------SNIQDLL-----------PVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRG 268 (542)
T ss_pred EEecCEEEEEcCcc-------------CCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcc
Confidence 89999999999954 4555544 56888999999999999999999999999997
Q ss_pred ---CeEEEeCC-----HHHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceEecccccCccccc
Q psy16434 678 ---LMGVRLNS-----KFDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPVQGRERDRPAQTC 732 (745)
Q Consensus 678 ---Il~ir~v~-----k~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~~~~e~~~~~~~~ 732 (745)
|+++|+++ +++|+|||++|||++++ +++++..++||+|+.|++.. ++|.+-..|
T Consensus 269 ~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~-~~~~~i~~~ 335 (542)
T PRK00013 269 TLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK-DNTTIVDGA 335 (542)
T ss_pred cceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec-CEEEEEeCC
Confidence 99999997 88999999999999999 79999999999999999864 555544333
No 78
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.74 E-value=1.3e-18 Score=200.71 Aligned_cols=239 Identities=16% Similarity=0.151 Sum_probs=184.2
Q ss_pred CCC----CcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH---
Q psy16434 460 TPP----AASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF--- 529 (745)
Q Consensus 460 ~~p----~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I--- 529 (745)
+|| .++++-++++.|++++|| |++++|.++.+ ..+..++-.|. |..|+++++++++.++..|+.....+
T Consensus 63 ~hp~~~~~akll~~~a~~qd~e~GDGTTtvviLa~~LL-~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~ 141 (541)
T PRK12851 63 EDKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIV-REGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTN 141 (541)
T ss_pred CCchhhHHHHHHHHHHHhhhHhhCCCccHHHHHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 677 778999999999999999 88889999988 77777888887 88999999999999999998765421
Q ss_pred --HHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccccccccchhhHhhhhhhcch-------hhc
Q psy16434 530 --VKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAAN-------TIL 600 (745)
Q Consensus 530 --Pr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~-------mil 600 (745)
...++..+. ...+.++++....-. .+|-+ +.+.+.+.. +...|+.+++|+++++...+.. |+.
T Consensus 142 ~~l~~va~~s~-~~~~~l~~lv~~Av~---~vg~~---g~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~ 213 (541)
T PRK12851 142 AEIAQVATISA-NGDAEIGRLVAEAME---KVGNE---GVITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEA 213 (541)
T ss_pred HHHHHHHHHhc-cChHHHHHHHHHHHH---Hhccc---CceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeE
Confidence 133333332 122333333222110 11211 112444443 5677899999999998887774 899
Q ss_pred ccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCC--
Q psy16434 601 QQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGL-- 678 (745)
Q Consensus 601 ~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gI-- 678 (745)
.+++++|++++++++ +++ .+..+++.|.+.|++|||++++|+|.|+++|.++||
T Consensus 214 ~~~~~~Ilv~d~~i~-------------~~~-----------~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g 269 (541)
T PRK12851 214 ELEDPYILIHEKKIS-------------NLQ-----------DLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRG 269 (541)
T ss_pred EecccEEEEEcCCcC-------------cHH-----------HHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcC
Confidence 999999999999853 222 266779999999999999999999999999999997
Q ss_pred ----eEEEe-----CCHHHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceEecccccCccccc
Q psy16434 679 ----MGVRL-----NSKFDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPVQGRERDRPAQTC 732 (745)
Q Consensus 679 ----l~ir~-----v~k~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~~~~e~~~~~~~~ 732 (745)
+++++ +++++|+|||++|||++++ +++++.+++||+|+.|+++. |+|.+...|
T Consensus 270 ~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~-~~~~~i~~~ 336 (541)
T PRK12851 270 GLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK-ENTTIIDGA 336 (541)
T ss_pred ceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc-ceEEEEcCC
Confidence 89997 9999999999999999999 78888888999999999966 666544333
No 79
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.73 E-value=4.3e-18 Score=196.01 Aligned_cols=233 Identities=16% Similarity=0.160 Sum_probs=177.6
Q ss_pred CCC----CcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH---
Q psy16434 460 TPP----AASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF--- 529 (745)
Q Consensus 460 ~~p----~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I--- 529 (745)
+|| .++.+.+++..|++++|| |++++|+++.+ ..+..++-.|. |..|+++++++++.+++.|+.....+
T Consensus 61 ~hp~~~~~akll~~~a~~qd~e~GDGTTtvviLa~~Ll-~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~ 139 (524)
T TIGR02348 61 EDKFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIV-KEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGK 139 (524)
T ss_pred CChhhHHHHHHHHHHHHccCceeCCCcchHHHHHHHHH-HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 677 789999999999999999 88889999988 77888888887 88999999999999999998764311
Q ss_pred --HHHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccc-cccccchhhHhhhhhhcchh-------h
Q psy16434 530 --VKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGI-LDLYLTKMWALKYATSAANT-------I 599 (745)
Q Consensus 530 --Pr~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI-~Ds~lVkG~vL~~A~e~a~m-------i 599 (745)
-..++..+. ...+.++++...... .+|-+ +.+.+.+ +++. .|+.+++|+++++...+..| +
T Consensus 140 ~~l~~va~ts~-~~~~~l~~lv~~A~~---~v~~~---~~i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~ 210 (524)
T TIGR02348 140 KEIAQVATISA-NNDEEIGSLIAEAME---KVGKD---GVITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKME 210 (524)
T ss_pred HHHHHHHHHhc-cChHHHHHHHHHHHH---HhCcC---CcEeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCe
Confidence 122222221 122333333222110 11111 1112222 3444 56899999999988777754 7
Q ss_pred cccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHc---
Q psy16434 600 LQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKY--- 676 (745)
Q Consensus 600 l~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~--- 676 (745)
..+++|+|+++++++ +++++ +..++++|++.|++|||++++|+|.|+++|.++
T Consensus 211 ~~~~n~~Ili~d~~i-------------~~~~~-----------i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~ 266 (524)
T TIGR02348 211 VELENPYILITDKKI-------------SNIKD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLR 266 (524)
T ss_pred EEeeCceeeeccCCc-------------CCHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcc
Confidence 889999999999964 24443 467788999999999999999999999999997
Q ss_pred ---CCeEEEeCCH-----HHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceEecccccC
Q psy16434 677 ---GLMGVRLNSK-----FDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPVQGRERDR 727 (745)
Q Consensus 677 ---gIl~ir~v~k-----~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~~~~e~~~ 727 (745)
||+++|++++ ++|+|||++|||++++ +++++.+++||+|+.|++.. ++|.
T Consensus 267 ~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~-~~~~ 329 (524)
T TIGR02348 267 GTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK-DNTT 329 (524)
T ss_pred cccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee-cEEE
Confidence 8999998865 8999999999999999 89999999999999999864 3443
No 80
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.73 E-value=5e-18 Score=173.10 Aligned_cols=126 Identities=26% Similarity=0.299 Sum_probs=117.1
Q ss_pred CCcceeecccccccccccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHH
Q psy16434 566 ENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLE 645 (745)
Q Consensus 566 ~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~ 645 (745)
+.+++++.+|+++.|+.+++|+++++...+..|+.++++|+|+++++|||+
T Consensus 44 ~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~~~n~~Ill~~~~le~----------------------------- 94 (209)
T cd03333 44 GVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRLENAKILLLDCPLEY----------------------------- 94 (209)
T ss_pred HHEEEEEecCcChhhceeEeeEEEeccccCCCCCeEcCCCcEEEEeCCeeE-----------------------------
Confidence 345899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--cc
Q psy16434 646 EQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ--GR 723 (745)
Q Consensus 646 ~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~--~~ 723 (745)
||+++++|++.|++||.++||++++++++++|+|||++|||+++++++++.++.||+|+.|++. |.
T Consensus 95 ------------vii~~~~I~~~al~~l~~~~I~~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~ 162 (209)
T cd03333 95 ------------VVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGE 162 (209)
T ss_pred ------------EEEecCcccHHHHHHHHHCCCEEEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999996 56
Q ss_pred cccCccccc
Q psy16434 724 ERDRPAQTC 732 (745)
Q Consensus 724 e~~~~~~~~ 732 (745)
++|.+-..|
T Consensus 163 ~~~~~~~~~ 171 (209)
T cd03333 163 EKLTFIEGC 171 (209)
T ss_pred eEEEEEEcC
Confidence 666544433
No 81
>PTZ00114 Heat shock protein 60; Provisional
Probab=99.72 E-value=6.3e-18 Score=195.81 Aligned_cols=228 Identities=14% Similarity=0.085 Sum_probs=181.1
Q ss_pred CCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH-----HHH
Q psy16434 461 PPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF-----VKT 532 (745)
Q Consensus 461 ~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I-----Pr~ 532 (745)
+|.++++-+++..|++++|| |++++|+++.+ ..+..++-.|. |..|+++++++.+.++..|+.....+ -..
T Consensus 79 ~~~a~ll~~~a~~qd~evGDGTTtvvvLa~~LL-~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~ 157 (555)
T PTZ00114 79 NVGAQLIRQVASKTNDKAGDGTTTATILARAIF-REGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILN 157 (555)
T ss_pred hHHHHHHHHHHHhhccccCCcccHHHHHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 44899999999999999999 88889999988 77777888887 88999999999999999998765421 122
Q ss_pred HHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccc-ccchhhHhhhhhhcch-------hhccccc
Q psy16434 533 LAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDL-YLTKMWALKYATSAAN-------TILQQTK 604 (745)
Q Consensus 533 LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds-~lVkG~vL~~A~e~a~-------mil~IDn 604 (745)
++..+. ...+.++++....- ..+|-| + .|....++++.|+ .+++|+++++...+.. |+..+++
T Consensus 158 va~ts~-~~~~~l~~li~eAv---~~vg~~---g--~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~ 228 (555)
T PTZ00114 158 VATISA-NGDVEIGSLIADAM---DKVGKD---G--TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELEN 228 (555)
T ss_pred HHHHHc-CChHHHHHHHHHHH---HHhCcC---C--cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecC
Confidence 332221 12233344433211 112211 3 4677788999998 6999999988877665 4788999
Q ss_pred ceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcC------C
Q psy16434 605 AKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYG------L 678 (745)
Q Consensus 605 ~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~g------I 678 (745)
|+|++++++|+ ++++ +..++++|++.|++|+|++++|++.|+++|.+++ |
T Consensus 229 ~~Ili~d~~L~-------------~~~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i 284 (555)
T PTZ00114 229 PLILVTDKKIS-------------SIQS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKV 284 (555)
T ss_pred CEEEEEcCCCC-------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEE
Confidence 99999999997 2232 5566789999999999999999999999999996 9
Q ss_pred eEEEe-----CCHHHHHHHHHHhCCeecccC------CCCCCCCCcccCCceEec
Q psy16434 679 MGVRL-----NSKFDLRRLCKAVNATALPRL------VSTYIKMPSFCPAPPVQG 722 (745)
Q Consensus 679 l~ir~-----v~k~dLeRIaraTGA~ivssl------d~l~~~~LG~c~~~~~~~ 722 (745)
+++++ +++++|+|||++|||+++++. +++.++.||+|+.|++..
T Consensus 285 ~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~ 339 (555)
T PTZ00114 285 CAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK 339 (555)
T ss_pred EEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe
Confidence 99988 778999999999999999998 777888899999999976
No 82
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.71 E-value=1e-17 Score=193.62 Aligned_cols=237 Identities=16% Similarity=0.153 Sum_probs=178.7
Q ss_pred CCCC----cccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH--
Q psy16434 460 TPPA----ASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVFV-- 530 (745)
Q Consensus 460 ~~p~----a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~IP-- 530 (745)
+||. ++++-+++.-|++++|| |++++|.++.+ ..+..++-.|. |..|+++++++++.+++.|+.....+.
T Consensus 63 ~hp~~~~ga~ll~~~a~~qd~e~GDGTTt~viLa~~LL-~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~ 141 (544)
T PRK12850 63 EDKFENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIV-REGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSS 141 (544)
T ss_pred CChhhhHHHHHHHHHHhhhcchhcCCcchHHHHHHHHH-HHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 6788 78888999999999999 88889999988 77778888887 889999999999999999987654110
Q ss_pred ---HHHHhhccchhhHHHHHHHHHhhc--CCccceeeecCCCcceeecccccccccccchhhHhhhhhhcchh-------
Q psy16434 531 ---KTLAENTGVKSNEVISKLYSAHNE--GKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANT------- 598 (745)
Q Consensus 531 ---r~LaeNAGld~~~vlsKL~~~h~~--g~~~~GIDl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~m------- 598 (745)
..++..+ ....+.++++....-. +... -+|++.+ +..+ .|+.+++|+++++...+..|
T Consensus 142 ~~l~~va~~s-~~~~~~l~~lv~eAv~~vg~~g-~i~v~~~-----~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~ 211 (544)
T PRK12850 142 KEIAQVATIS-ANGDESIGEMIAEAMDKVGKEG-VITVEEA-----KTLG---TELDVVEGMQFDRGYLSPYFVTNPEKM 211 (544)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHhcccC-ceeeEEc-----cccC---cceEEEEeEEecCccCcCccccccccC
Confidence 1122222 1123334444332110 1000 1222211 1222 68899999999888777654
Q ss_pred hcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCC
Q psy16434 599 ILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGL 678 (745)
Q Consensus 599 il~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gI 678 (745)
+..+++++|+++++.+ ++++ .+..++++|++.|++|||++++|+|.|+++|.++||
T Consensus 212 ~~~~~n~~Ill~d~~i-------------~~~~-----------~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i 267 (544)
T PRK12850 212 RAELEDPYILLHEKKI-------------SNLQ-----------DLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKL 267 (544)
T ss_pred eEEEeCCEEEEEeccc-------------CCHH-----------HHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCC
Confidence 7889999999999954 2222 277789999999999999999999999999999999
Q ss_pred ------eEEEe-----CCHHHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceEecccccCccccc
Q psy16434 679 ------MGVRL-----NSKFDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPVQGRERDRPAQTC 732 (745)
Q Consensus 679 ------l~ir~-----v~k~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~~~~e~~~~~~~~ 732 (745)
+++++ +++++|+|||++|||++++ +++++.+++||+|+.|++.. ++|.+...|
T Consensus 268 ~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~-~~~~~i~g~ 336 (544)
T PRK12850 268 RGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK-ENTTIIDGA 336 (544)
T ss_pred cccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe-eeEEEEeCC
Confidence 99998 9999999999999999999 78899988999999999864 555544433
No 83
>KOG0230|consensus
Probab=99.66 E-value=1.5e-16 Score=191.02 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=143.4
Q ss_pred eecCCCcceeecccccccccccchhhHhhhhhhcchhhcccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHH
Q psy16434 562 DINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEE 641 (745)
Q Consensus 562 Dl~~~~ikI~dm~g~gI~Ds~lVkG~vL~~A~e~a~mil~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~ 641 (745)
+...+.++++++.++...|+.+++|+|+.+++.+..|..++.+++|+++.++|+|++... ....++.++.||.
T Consensus 358 md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~leyqrisn-------~lsS~etvlqqE~ 430 (1598)
T KOG0230|consen 358 MDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLEYQRISN-------QLSSIETVLQQEK 430 (1598)
T ss_pred cCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchhhhhhhc-------cccchHHHHhhHH
Confidence 333455799999999999999999999999999999999999999999999999999775 3456778888899
Q ss_pred HHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe
Q psy16434 642 NQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ 721 (745)
Q Consensus 642 ~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~ 721 (745)
++++.+|.+|....+|+++++++|++.|+++|...||..+-++|+.-|+||+|+|||.|++++|.+...+||+|+.|++.
T Consensus 431 e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~tga~I~~siDslt~~klg~C~~F~v~ 510 (1598)
T KOG0230|consen 431 EYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRCTGADIVPSVDSLTSQKLGYCELFRVE 510 (1598)
T ss_pred HHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHHhcCceecchhhhhccccCCCccHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
No 84
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=99.66 E-value=6.6e-17 Score=187.03 Aligned_cols=229 Identities=14% Similarity=0.132 Sum_probs=174.4
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH-----HH
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF-----VK 531 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I-----Pr 531 (745)
+||.++++.+++.-|++++|| |++++|+++.+ ..+..++-.|. |..|+++++.+++.+++.|+.....+ ..
T Consensus 67 ~~p~akll~e~a~~q~~e~GDGTTtvvvLa~eLL-~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~ 145 (545)
T PRK12852 67 ENMGAQMVREVASKTNDLAGDGTTTATVLAQAIV-REGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIA 145 (545)
T ss_pred cChHHHHHHHHHhhcCceecCCcchHHHHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHH
Confidence 689999999999999999999 88889999988 77777888887 77899999999999999998765311 12
Q ss_pred HHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccc-cccccchhhHhhhhhhcch-------hhcccc
Q psy16434 532 TLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGI-LDLYLTKMWALKYATSAAN-------TILQQT 603 (745)
Q Consensus 532 ~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI-~Ds~lVkG~vL~~A~e~a~-------mil~ID 603 (745)
.++..+. ...+.+.++...... .+|-+ +.+.+. .++++ .|+.+++|+.+++...+.. |+..++
T Consensus 146 ~va~~s~-~~~~~l~~li~eA~~---~vg~~---g~i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~ 216 (545)
T PRK12852 146 QVGTISA-NGDAAIGKMIAQAMQ---KVGNE---GVITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELD 216 (545)
T ss_pred HHHhhhc-CChHHHHHHHHHHHH---HhccC---Cceeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEec
Confidence 2222221 112333333322110 11111 111222 14444 6888999999987766653 788899
Q ss_pred cceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHc------C
Q psy16434 604 KAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKY------G 677 (745)
Q Consensus 604 n~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~------g 677 (745)
+++|+++++.+ ++++ .+..+++.|++.|++|||++++|+|.|+++|..+ +
T Consensus 217 n~~Ili~d~~i-------------~~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~ 272 (545)
T PRK12852 217 DAYILLHEKKL-------------SGLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLK 272 (545)
T ss_pred CceEEEecCcc-------------CCHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccce
Confidence 99999998744 2332 5666789999999999999999999999999986 8
Q ss_pred CeEEEeCC-----HHHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceEec
Q psy16434 678 LMGVRLNS-----KFDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPVQG 722 (745)
Q Consensus 678 Il~ir~v~-----k~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~~~ 722 (745)
|+++|+.+ +++|+|||++|||++++ +++++..++||+|+.|++..
T Consensus 273 i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~ 327 (545)
T PRK12852 273 VAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK 327 (545)
T ss_pred EEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc
Confidence 99999877 99999999999999999 78999989999999999965
No 85
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=99.62 E-value=2.4e-16 Score=183.53 Aligned_cols=228 Identities=14% Similarity=0.124 Sum_probs=176.1
Q ss_pred CCCC----cccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH--
Q psy16434 460 TPPA----ASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVFV-- 530 (745)
Q Consensus 460 ~~p~----a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~IP-- 530 (745)
+||. ++++-+++.-|++++|| |++++|+++.+ ..+..++-.|. |..|+++++++.+.+++.|+.....++
T Consensus 118 ~hP~~~~gakll~~~a~~qd~evGDGTTTvvVLa~~LL-~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~ 196 (600)
T PLN03167 118 EDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLI-AEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDS 196 (600)
T ss_pred CCchhhHHHHHHHHHHHhhhhhhCCCccHHHHHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 5674 78999999999999999 88899999988 77788888887 889999999999999999987643221
Q ss_pred --HHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeeccccccccc-ccchhhHhhhhhhcc-------hhhc
Q psy16434 531 --KTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDL-YLTKMWALKYATSAA-------NTIL 600 (745)
Q Consensus 531 --r~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI~Ds-~lVkG~vL~~A~e~a-------~mil 600 (745)
..++..+.- ....+.++....- ..+|- .+ .+.--.++++.|+ .+++|+++++...+. .|++
T Consensus 197 ~L~~vA~tS~~-~~~~i~~liaeAv---~~Vg~---~g--~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~ 267 (600)
T PLN03167 197 ELADVAAVSAG-NNYEVGNMIAEAM---SKVGR---KG--VVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSV 267 (600)
T ss_pred HHHHHHHHhcc-CcHHHHHHHHHHH---HHhcc---CC--cEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeE
Confidence 222222211 1123333322111 01121 11 1111146788887 799999999887777 7899
Q ss_pred ccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHH------
Q psy16434 601 QQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLN------ 674 (745)
Q Consensus 601 ~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~------ 674 (745)
.++||+|+++++. +++++++.+++ +++.+.|+++|++.++|++.|+++|.
T Consensus 268 ~l~np~Ill~d~~-------------i~~~~~l~~~l-----------e~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g 323 (600)
T PLN03167 268 EYDNCKLLLVDKK-------------ITNARDLIGIL-----------EDAIRGGYPLLIIAEDIEQEALATLVVNKLRG 323 (600)
T ss_pred EEeCCEEEEEccc-------------cCCHHHHHHHH-----------HHHHHhCcCEEEEcCCCCHHHHHHHHHhhccc
Confidence 9999999999974 46777777765 36777999999999999999999999
Q ss_pred HcCCeEEEeCC-----HHHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceEe
Q psy16434 675 KYGLMGVRLNS-----KFDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPVQ 721 (745)
Q Consensus 675 k~gIl~ir~v~-----k~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~~ 721 (745)
..+|+++|+.+ +++|+|||++|||++++ +++++..+.||+|+.|++.
T Consensus 324 ~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~ 380 (600)
T PLN03167 324 SLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLT 380 (600)
T ss_pred cceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEe
Confidence 89999999996 88999999999999999 7888888999999999984
No 86
>PRK14104 chaperonin GroEL; Provisional
Probab=99.62 E-value=3.1e-16 Score=181.31 Aligned_cols=238 Identities=17% Similarity=0.159 Sum_probs=175.3
Q ss_pred CCCCcccccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHH-----HH
Q psy16434 460 TPPAASELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVF-----VK 531 (745)
Q Consensus 460 ~~p~a~~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~I-----Pr 531 (745)
+||.++++-+++..|++++|| |++++|+++.+ ..+..++-.|. |..++++++++++.++..|+.....+ ..
T Consensus 67 ~~pgakll~e~a~~qd~e~GDGTTTvvvLa~~LL-~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~ 145 (546)
T PRK14104 67 ENMGAQMVREVASKSADAAGDGTTTATVLAQAIV-REGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIA 145 (546)
T ss_pred cChHHHHHHHHHHhhcccccCcccHHHHHHHHHH-HHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHH
Confidence 589999999999999999999 88899999988 77777888887 77899999999999999998765421 12
Q ss_pred HHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecccccc-cccccchhhHhhhhhhcchh-------hcccc
Q psy16434 532 TLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGI-LDLYLTKMWALKYATSAANT-------ILQQT 603 (745)
Q Consensus 532 ~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~g~gI-~Ds~lVkG~vL~~A~e~a~m-------il~ID 603 (745)
.++..+.- ..+.+.++....- ..+|-+ +.+.+.+ ..+. .|+.+++|+++++...+..| ...++
T Consensus 146 ~va~~s~~-~d~~i~~lv~~Av---~~vg~~---g~i~v~~--~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~ 216 (546)
T PRK14104 146 QVGTISAN-GDAEIGKFLADAM---KKVGNE---GVITVEE--AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMD 216 (546)
T ss_pred HHHHHHhc-CchHHHHHHHHHH---HHhccC---CceeeEe--cccccceEEEEEEEEEeCCCCCcchhcCcccCceeee
Confidence 22222211 1122333322111 011211 1112221 1234 47888999999877776644 56678
Q ss_pred cceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccHHHHHHHHH------cC
Q psy16434 604 KAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNK------YG 677 (745)
Q Consensus 604 n~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k------~g 677 (745)
+++|++++.. ++++++ +..+++.|.+.|++|||++++|++.|+++|.. .|
T Consensus 217 ~~~Ilv~d~~-------------i~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~ 272 (546)
T PRK14104 217 DAYILINEKK-------------LSSLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLK 272 (546)
T ss_pred CcEEEEehhh-------------hcCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceee
Confidence 8999888722 334432 56779999999999999999999999999995 68
Q ss_pred CeEEEeCC-----HHHHHHHHHHhCCeeccc-----CCCCCCCCCcccCCceEecccccCccccc
Q psy16434 678 LMGVRLNS-----KFDLRRLCKAVNATALPR-----LVSTYIKMPSFCPAPPVQGRERDRPAQTC 732 (745)
Q Consensus 678 Il~ir~v~-----k~dLeRIaraTGA~ivss-----ld~l~~~~LG~c~~~~~~~~e~~~~~~~~ 732 (745)
|+++++++ +++|+|||++|||+++++ ++++..++||+|+.+++ +++++.....|
T Consensus 273 i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~-~~~~~~~i~g~ 336 (546)
T PRK14104 273 VAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMI-DKENTTIVNGA 336 (546)
T ss_pred EEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEE-cCCEEEEEeCC
Confidence 99998888 899999999999999999 89999999999999997 55666655444
No 87
>CHL00093 groEL chaperonin GroEL
Probab=99.62 E-value=2.7e-16 Score=181.44 Aligned_cols=233 Identities=15% Similarity=0.146 Sum_probs=168.2
Q ss_pred CCCCcc----cccccccEEEEEECC--eeEEEEEecccccceeEEEEcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH--
Q psy16434 460 TPPAAS----ELGYADSVAVDELGD--TAVVVFKLEAAESRIATLVIRGA-TENYMDDIERAVDDGVNTFKGITKVFV-- 530 (745)
Q Consensus 460 ~~p~a~----~LG~a~~vq~~eiGd--tsvti~~g~~l~~~a~TIIlrG~-t~~IldE~eral~DAL~vlk~~~~~IP-- 530 (745)
+||.++ ++-++..-+++++|| |++++|+++.+ ..+..++-+|. |..|+++++++++.+++.++.....+.
T Consensus 62 ~hp~a~~g~~li~~~a~~~~~e~GDGTTtvvvLa~eLL-~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~ 140 (529)
T CHL00093 62 EDHIENTGVALIRQAASKTNDVAGDGTTTATVLAYAIV-KQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDI 140 (529)
T ss_pred cCHHHHHHHHHHHHHHHhcCceecCCCCHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 778875 455576666669999 88899999988 77888888887 899999999999999999987653211
Q ss_pred ---HHHHhhccchhhHHHHHHHHHhhcCCccceeeecCCCcceeecc--cccccccccchhhHhhhhhhcchh---hc--
Q psy16434 531 ---KTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAA--EAGILDLYLTKMWALKYATSAANT---IL-- 600 (745)
Q Consensus 531 ---r~LaeNAGld~~~vlsKL~~~h~~g~~~~GIDl~~~~ikI~dm~--g~gI~Ds~lVkG~vL~~A~e~a~m---il-- 600 (745)
..++..+. ...+.+++|....- ..+|-+ + ..+.. ++...++.+++|+++++...+..| ++
T Consensus 141 ~~L~~VA~ts~-~~~~~l~~lv~eAv---~~vg~~---g---~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~ 210 (529)
T CHL00093 141 QAITQVASISA-GNDEEVGSMIADAI---EKVGRE---G---VISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERM 210 (529)
T ss_pred HHHHHHHHHhc-cChHHHHHHHHHHH---HHhccC---C---ceeecCCCccceeeEEEeeEEecCccCcCccccCCccc
Confidence 11222221 12333333332211 011111 1 11121 223566788999999877665543 33
Q ss_pred --ccccceeeeeccCcccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcccH--HHHHHHHH-
Q psy16434 601 --QQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGD--MALHYLNK- 675 (745)
Q Consensus 601 --~IDn~kIlll~~~Le~~k~e~~~~v~i~s~~el~~~~~~E~~~i~~~V~~I~~~gvnVVl~~~~I~d--~al~~L~k- 675 (745)
.++||+|++++++||+.+ ..+..+++.|.+.|+++|+++++|++ ++.+|+++
T Consensus 211 ~~~l~n~~Ili~d~~le~~~-----------------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~ 267 (529)
T CHL00093 211 EVVQENPYILLTDKKITLVQ-----------------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKL 267 (529)
T ss_pred eEEecCceehhhcCCCCchH-----------------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhh
Confidence 489999999999998643 23777889999999999999999999 55555588
Q ss_pred ---cCCeEEEeCC-----HHHHHHHHHHhCCeecc-----cCCCCCCCCCcccCCceEecccccC
Q psy16434 676 ---YGLMGVRLNS-----KFDLRRLCKAVNATALP-----RLVSTYIKMPSFCPAPPVQGRERDR 727 (745)
Q Consensus 676 ---~gIl~ir~v~-----k~dLeRIaraTGA~ivs-----sld~l~~~~LG~c~~~~~~~~e~~~ 727 (745)
+||+++|+++ +++|+|||++|||++++ +++++.+.+||+|+.+++.. ++++
T Consensus 268 ~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~-~~~~ 331 (529)
T CHL00093 268 RGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK-DSTT 331 (529)
T ss_pred cccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec-CEEE
Confidence 5999999995 48899999999999999 79999999999999999863 3443
No 88
>KOG0357|consensus
Probab=99.40 E-value=7.4e-14 Score=147.09 Aligned_cols=83 Identities=27% Similarity=0.334 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecccCCCCCCCCCcccCCceEe--
Q psy16434 644 LEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPAPPVQ-- 721 (745)
Q Consensus 644 i~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivssld~l~~~~LG~c~~~~~~-- 721 (745)
++++++.+++.|+++++||||+||.|.|+|.+++.-++|||...++|-||.+|||+||+||+++++++||+|+.|++.
T Consensus 144 f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sf 223 (400)
T KOG0357|consen 144 FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISF 223 (400)
T ss_pred HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEec
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ccccc
Q psy16434 722 GRERD 726 (745)
Q Consensus 722 ~~e~~ 726 (745)
|-+|.
T Consensus 224 gttkd 228 (400)
T KOG0357|consen 224 GTTKD 228 (400)
T ss_pred ccccc
Confidence 55554
No 89
>KOG0230|consensus
Probab=98.38 E-value=6.4e-07 Score=109.74 Aligned_cols=147 Identities=18% Similarity=0.290 Sum_probs=127.1
Q ss_pred ChhhHHHHHHHHHHhhcCCC--CCCCCc-cceEEEEccCCCcccceeEeeEEEeecccC--CceeeeCceEEEeccCCCc
Q psy16434 379 NEDFLTDLITKACVSILPDG--SSSFNV-DNVRITKILGSGLFNSEIVQGMVFKRSVEG--DITKQTKAKIAVYTCPVDI 453 (745)
Q Consensus 379 ~~~~ls~LivdAv~~v~~~~--~~~~dl-~~I~I~ki~Ggs~~dS~lv~G~~l~~~~~~--~~~~i~nakIlil~~~Le~ 453 (745)
|.+.+..|+.+|...+.|+. ++.+|+ ++|+|.+|.||+..||+++.|+++.+...+ |..+.++|+|+++.++|++
T Consensus 333 W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~ley 412 (1598)
T KOG0230|consen 333 WLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLEY 412 (1598)
T ss_pred HHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchhh
Confidence 46889999999999998873 455666 799999999999999999999999999876 6889999999999999999
Q ss_pred cccccC--------------------------------------------------------------------------
Q psy16434 454 ATTETK-------------------------------------------------------------------------- 459 (745)
Q Consensus 454 ~k~e~k-------------------------------------------------------------------------- 459 (745)
.+...+
T Consensus 413 qrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~tga~I~~s 492 (1598)
T KOG0230|consen 413 QRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRCTGADIVPS 492 (1598)
T ss_pred hhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHHhcCceecc
Confidence 876432
Q ss_pred -CCCCcccccccccEEEEEEC-----CeeEEEEEecccccceeEEEEcCCchhhHHHHHHHHHHHHHHHHHHH
Q psy16434 460 -TPPAASELGYADSVAVDELG-----DTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGIT 526 (745)
Q Consensus 460 -~~p~a~~LG~a~~vq~~eiG-----dtsvti~~g~~l~~~a~TIIlrG~t~~IldE~eral~DAL~vlk~~~ 526 (745)
+.++...||+|..++.+++- .+++++|+||.. ..++||++||....+++++++-++-++-+.-...
T Consensus 493 iDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~-~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~ 564 (1598)
T KOG0230|consen 493 VDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPK-PLGCTILLRGDSLEELKKVKHVVQYLVFAAYHLA 564 (1598)
T ss_pred hhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCC-CCCceEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777889999999888875 378999999987 8999999999999999999999988887776543
No 90
>PHA00616 hypothetical protein
Probab=88.47 E-value=0.31 Score=38.06 Aligned_cols=38 Identities=29% Similarity=0.440 Sum_probs=33.1
Q ss_pred eeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEee
Q psy16434 41 TYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVIS 80 (745)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (745)
+|||+.|+. .|...-+-.+|+.+||-..|-.-.+|.|+
T Consensus 1 pYqC~~CG~--~F~~~s~l~~H~r~~hg~~~~~~~~~y~~ 38 (44)
T PHA00616 1 MYQCLRCGG--IFRKKKEVIEHLLSVHKQNKLTLEYFYIY 38 (44)
T ss_pred CCccchhhH--HHhhHHHHHHHHHHhcCCCccceeEEEEE
Confidence 699999986 58899999999999999988877777765
No 91
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=70.04 E-value=2.3 Score=34.30 Aligned_cols=40 Identities=18% Similarity=0.557 Sum_probs=31.2
Q ss_pred ceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCc
Q psy16434 40 QTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNE 91 (745)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (745)
++|.|+.|+. . .|..+-.+|++..|-+++. .+.|++|.+.
T Consensus 1 ~~f~CP~C~~-~--~~~~~L~~H~~~~H~~~~~---------~v~CPiC~~~ 40 (54)
T PF05605_consen 1 DSFTCPYCGK-G--FSESSLVEHCEDEHRSESK---------NVVCPICSSR 40 (54)
T ss_pred CCcCCCCCCC-c--cCHHHHHHHHHhHCcCCCC---------CccCCCchhh
Confidence 5899999998 3 5667788999998877543 2579999863
No 92
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=64.23 E-value=16 Score=32.48 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeCC
Q psy16434 646 EQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNS 685 (745)
Q Consensus 646 ~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~ 685 (745)
..++.+.+.++++|++. +|++-+.+.|.++||-++....
T Consensus 54 ~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 54 KAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 45666777999999996 7999999999999999998776
No 93
>TIGR03829 YokU_near_AblA uncharacterized protein, YokU family. Members of this protein family occur in various species of the genus Bacillus, always next to the gene (kamA or ablA) for lysine 2,3-aminomutase. Members have a pair of CXXC motifs, and share homology to the amino-terminal region of a family of putative transcription factors for which the C-terminal is modeled by pfam01381, a helix-turn-helix domain model. This family, however, is shorter and lacks the helix-turn-helix region. The function of this protein family is unknown, but a regulatory role in compatible solute biosynthesis is suggested by local genome context.
Probab=62.95 E-value=2.7 Score=37.80 Aligned_cols=44 Identities=25% Similarity=0.655 Sum_probs=33.3
Q ss_pred eEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeec--chhhccccCccc
Q psy16434 43 QCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISD--RFLCNLCGNEYK 93 (745)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 93 (745)
.|..|++... ..-.-.|.|+-|+.+.+++|-+ -..|..||.+|-
T Consensus 1 ~C~~C~~~~~-------~~~~tTv~~el~~G~~~IvIknVPa~~C~~CGe~y~ 46 (89)
T TIGR03829 1 KCRWCEEEKA-------IARTTTVYWELPDGTKAIEIKETPSISCSHCGMEYQ 46 (89)
T ss_pred CCcccCCCce-------ecceEEEEEEecCCceEEEEecCCcccccCCCcEee
Confidence 3888877432 1223468999999999999976 468999999883
No 94
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=62.92 E-value=17 Score=31.69 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=32.4
Q ss_pred HHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeCC
Q psy16434 647 QIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNS 685 (745)
Q Consensus 647 ~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~ 685 (745)
+.+.+.+.++++|++. +|.+.+...|.++||-++....
T Consensus 45 ~~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~~~ 82 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQGAG 82 (94)
T ss_dssp HHHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEESTS
T ss_pred HHHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEcCC
Confidence 3556667899999996 7999999999999999999743
No 95
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=61.79 E-value=21 Score=31.54 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=33.3
Q ss_pred HHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeCC
Q psy16434 647 QIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNS 685 (745)
Q Consensus 647 ~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~ 685 (745)
..+.+...|+++|++. +|++-+...|.++||.++....
T Consensus 53 ~~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 4566677999999998 6999999999999999998776
No 96
>PHA02768 hypothetical protein; Provisional
Probab=58.24 E-value=5.6 Score=32.65 Aligned_cols=41 Identities=15% Similarity=0.344 Sum_probs=30.5
Q ss_pred eeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCccccee
Q psy16434 41 TYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKFRN 96 (745)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (745)
-|+|..|+.. |.....-.+|..+|+ ..+.|..||..|.-.+
T Consensus 5 ~y~C~~CGK~--Fs~~~~L~~H~r~H~-------------k~~kc~~C~k~f~~~s 45 (55)
T PHA02768 5 GYECPICGEI--YIKRKSMITHLRKHN-------------TNLKLSNCKRISLRTG 45 (55)
T ss_pred ccCcchhCCe--eccHHHHHHHHHhcC-------------CcccCCcccceecccc
Confidence 4899999864 666666689999976 2577899998876433
No 97
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=57.75 E-value=30 Score=32.92 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=41.0
Q ss_pred HHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCe
Q psy16434 647 QIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNAT 699 (745)
Q Consensus 647 ~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ 699 (745)
..+.+++.|+|+|+++ +|.+-|..+|..+||-+..-.....=+-|-....+.
T Consensus 57 ~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g~ 108 (121)
T COG1433 57 IAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEGE 108 (121)
T ss_pred HHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcCC
Confidence 4677889999999997 899999999999999999888844444444444443
No 98
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=57.48 E-value=5.4 Score=40.34 Aligned_cols=38 Identities=24% Similarity=0.425 Sum_probs=30.5
Q ss_pred eeeccceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccc
Q psy16434 35 YFTRNQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKF 94 (745)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (745)
|-+.++.|.|+.|+-+--|-|..+ .-|.|+.||..-.+
T Consensus 111 ~e~~~~~Y~Cp~C~~rytf~eA~~----------------------~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 111 EEENNMFFFCPNCHIRFTFDEAME----------------------YGFRCPQCGEMLEE 148 (178)
T ss_pred hccCCCEEECCCCCcEEeHHHHhh----------------------cCCcCCCCCCCCee
Confidence 456689999999999988887532 37999999987654
No 99
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=57.02 E-value=2.8 Score=39.09 Aligned_cols=41 Identities=20% Similarity=0.547 Sum_probs=28.6
Q ss_pred EeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcc
Q psy16434 44 CLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEY 92 (745)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (745)
|+.|+..++.+ .++.|||.-.... +.|-..-+.|+.||.+|
T Consensus 1 C~~C~~~~~~~-------~~~~~~~~~~G~~-~~v~~~~~~C~~CGe~~ 41 (127)
T TIGR03830 1 CPICGSGELVR-------DVKDEPYTYKGES-ITIGVPGWYCPACGEEL 41 (127)
T ss_pred CCCCCCcccee-------eeecceEEEcCEE-EEEeeeeeECCCCCCEE
Confidence 88998766553 4567777665533 33366788999999875
No 100
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=56.49 E-value=5.4 Score=39.49 Aligned_cols=38 Identities=24% Similarity=0.461 Sum_probs=31.3
Q ss_pred eeeccceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccc
Q psy16434 35 YFTRNQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKF 94 (745)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (745)
+.+.|+-|.|+.|+.+--|-|..+ .-|.|+.||..-.+
T Consensus 103 ~e~~~~~Y~Cp~c~~r~tf~eA~~----------------------~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 103 FETNNMFFICPNMCVRFTFNEAME----------------------LNFTCPRCGAMLDY 140 (158)
T ss_pred hccCCCeEECCCCCcEeeHHHHHH----------------------cCCcCCCCCCEeee
Confidence 567799999999999998988764 26999999987543
No 101
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=55.24 E-value=9 Score=41.74 Aligned_cols=78 Identities=24% Similarity=0.529 Sum_probs=55.3
Q ss_pred CcccccCCCcceeeceeeeeecc-ceeeEee--ecC------cchhhhhhhhhhhhhhccCCCCCCCceEEeecc-hhhc
Q psy16434 17 SPELASDGQNYQTYGIEKYFTRN-QTYQCLV--CKN------KTLFHDLAEGARHVERHHWDQPDKNSLFVISDR-FLCN 86 (745)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 86 (745)
.|-++-+|+.|-.|--....+.. .+|.|.| |.. .--||-| +|-.-...|.-..|++-..|+.-|. +.|.
T Consensus 324 ~~~~~H~~~~~id~p~r~l~v~d~KpykCpV~gC~K~YknqnGLKYH~l-hGH~~~~~~~~p~p~~~~~F~~~~KPYrCe 402 (423)
T COG5189 324 NGKLAHGGERNIDTPSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHML-HGHQNQKLHENPSPEKMNIFSAKDKPYRCE 402 (423)
T ss_pred CcccccCCccccCCccceeEeecCceecCCCCCchhhhccccchhhhhh-ccccCcccCCCCCccccccccccCCceecc
Confidence 46688889888777666555555 9999998 532 2235544 4544455566668889889988774 8999
Q ss_pred cccCcccce
Q psy16434 87 LCGNEYKFR 95 (745)
Q Consensus 87 ~~~~~~~~~ 95 (745)
.|++.||=-
T Consensus 403 vC~KRYKNl 411 (423)
T COG5189 403 VCDKRYKNL 411 (423)
T ss_pred ccchhhccC
Confidence 999999843
No 102
>PHA00732 hypothetical protein
Probab=54.58 E-value=5.6 Score=34.93 Aligned_cols=61 Identities=21% Similarity=0.368 Sum_probs=38.8
Q ss_pred eeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccceeeEEeecccCCccccCcceEEeecc
Q psy16434 41 TYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKFRNFIIGRATSNDTIGTNRTRIACSLY 120 (745)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (745)
+|+|..|+.. |-....-.+|..+||.. +.|..||..|. +---+.- +-+.--|.|-|-|.
T Consensus 1 py~C~~Cgk~--F~s~s~Lk~H~r~~H~~-------------~~C~~CgKsF~--~l~~H~~----~~~~~~~~~~~~~~ 59 (79)
T PHA00732 1 MFKCPICGFT--TVTLFALKQHARRNHTL-------------TKCPVCNKSYR--RLNQHFY----SQYDIEHLIYCYLF 59 (79)
T ss_pred CccCCCCCCc--cCCHHHHHHHhhcccCC-------------CccCCCCCEeC--Chhhhhc----ccCCccceEEeEee
Confidence 5899999865 55566667888765531 25999999775 2222222 22334588888776
Q ss_pred cC
Q psy16434 121 PT 122 (745)
Q Consensus 121 ~~ 122 (745)
.|
T Consensus 60 ~~ 61 (79)
T PHA00732 60 ST 61 (79)
T ss_pred ec
Confidence 44
No 103
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=45.89 E-value=11 Score=41.40 Aligned_cols=43 Identities=28% Similarity=0.627 Sum_probs=30.1
Q ss_pred cceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccc
Q psy16434 39 NQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKF 94 (745)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (745)
..-|+|..|++.. +.+.+.+++..-+.-.+|+. |..||+.|+|
T Consensus 256 t~~~~C~~C~~~~--------~~~~q~QtrsaDEpmT~f~~-----C~~Cg~~w~f 298 (299)
T TIGR01385 256 TDLFTCGKCKQKK--------CTYYQLQTRSADEPMTTFVT-----CEECGNRWKF 298 (299)
T ss_pred cccccCCCCCCcc--------ceEEEecccCCCCCCeEEEE-----cCCCCCeeee
Confidence 3459999998753 33344556655555577754 9999999988
No 104
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=44.82 E-value=49 Score=32.53 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=38.7
Q ss_pred HHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEe--CC-----HHHHHHHHHHhCCe
Q psy16434 648 IKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRL--NS-----KFDLRRLCKAVNAT 699 (745)
Q Consensus 648 V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~--v~-----k~dLeRIaraTGA~ 699 (745)
++.|++++|||||..........+.|.+.||.++-. .. .+.++.+++++|-.
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~~ 111 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGAE 111 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCh
Confidence 778889999999987665555678899999965432 11 13578899999863
No 105
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=44.61 E-value=7.5 Score=29.57 Aligned_cols=40 Identities=28% Similarity=0.604 Sum_probs=26.0
Q ss_pred EeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeec--chhhccccCcc
Q psy16434 44 CLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISD--RFLCNLCGNEY 92 (745)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 92 (745)
|.+|+.+++-++ .+..|-.+ +..++++.+ .+.|+.||.+|
T Consensus 1 C~~C~~~~~~~~--------~~~~~~~~-~~~~~~i~~vp~~~C~~CGE~~ 42 (46)
T TIGR03831 1 CPICGGEELEGK--------TTTETYEY-GGELIVIENVPALVCPQCGEEY 42 (46)
T ss_pred CCCCCCceecce--------EEEEEEEe-CCEEEEEeCCCccccccCCCEe
Confidence 778877666443 22333334 667777766 45699999886
No 106
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=43.77 E-value=61 Score=33.29 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=40.0
Q ss_pred HHHHHHcCCcEEEeCCcccHH-HHHHHHHcCCeEEEeC--C----HHHHHHHHHHhCCe
Q psy16434 648 IKAIADTGANVVVAGAKFGDM-ALHYLNKYGLMGVRLN--S----KFDLRRLCKAVNAT 699 (745)
Q Consensus 648 V~~I~~~gvnVVl~~~~I~d~-al~~L~k~gIl~ir~v--~----k~dLeRIaraTGA~ 699 (745)
+++|++++|||||...+-++. ..+.|.+.||.++-.- . .+.++.|++++|-.
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 788999999999997654444 4888999999766432 2 33589999999986
No 107
>KOG2593|consensus
Probab=43.29 E-value=5.7 Score=44.99 Aligned_cols=38 Identities=26% Similarity=0.584 Sum_probs=28.5
Q ss_pred cceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEe-ecchhhccccCccc
Q psy16434 39 NQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVI-SDRFLCNLCGNEYK 93 (745)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 93 (745)
-+-|.|+.|+.| | ++-|-++||-- +++|.|+.||-+..
T Consensus 126 ~~~Y~Cp~C~kk--y---------------t~Lea~~L~~~~~~~F~C~~C~gelv 164 (436)
T KOG2593|consen 126 VAGYVCPNCQKK--Y---------------TSLEALQLLDNETGEFHCENCGGELV 164 (436)
T ss_pred cccccCCccccc--h---------------hhhHHHHhhcccCceEEEecCCCchh
Confidence 467999999876 3 33345667665 78999999998865
No 108
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=41.19 E-value=8.9 Score=33.56 Aligned_cols=49 Identities=29% Similarity=0.793 Sum_probs=9.3
Q ss_pred eEeeecCcchhhhhhhhhhhh-hhccCCCCCCCceEE-----------eecchhhccccCccc
Q psy16434 43 QCLVCKNKTLFHDLAEGARHV-ERHHWDQPDKNSLFV-----------ISDRFLCNLCGNEYK 93 (745)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 93 (745)
||+.|+-. |-+..+...|+ +.|..+.|+...+.. +...+.|..|+..++
T Consensus 1 ~C~~C~~~--f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~ 61 (100)
T PF12756_consen 1 QCLFCDES--FSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFR 61 (100)
T ss_dssp --------------------------------------------------SSEEBSSSS-EES
T ss_pred Cccccccc--cccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCc
Confidence 79999865 77777788887 667777764333221 223588999998854
No 109
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=41.10 E-value=9.8 Score=24.27 Aligned_cols=24 Identities=33% Similarity=0.811 Sum_probs=17.0
Q ss_pred eeEeeecCcchhhhhhhhhhhhhhcc
Q psy16434 42 YQCLVCKNKTLFHDLAEGARHVERHH 67 (745)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (745)
|+|.+|+-. |-...+-.+|+.+||
T Consensus 1 ~~C~~C~~~--~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKS--FRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-E--ESSHHHHHHHHHHHS
T ss_pred CCCcCCCCc--CCcHHHHHHHHHhhC
Confidence 789999754 556677778888887
No 110
>KOG0909|consensus
Probab=40.80 E-value=9.7 Score=43.23 Aligned_cols=56 Identities=30% Similarity=0.543 Sum_probs=37.3
Q ss_pred Ccceeecee----eee-----eccceeeEeeecCcch---------hhhhhhhhhhhhhccCCCCCCCceEEeecchhhc
Q psy16434 25 QNYQTYGIE----KYF-----TRNQTYQCLVCKNKTL---------FHDLAEGARHVERHHWDQPDKNSLFVISDRFLCN 86 (745)
Q Consensus 25 ~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (745)
.-|+.|-|. .|| +--.--.|.+|+++|- =.+++-||..||.| .||
T Consensus 136 ki~kdy~i~leLL~WFKq~FF~WvN~PpC~~CG~et~~~l~~~~p~eeE~~~Ga~rVEiy-----------------~C~ 198 (500)
T KOG0909|consen 136 KIYKDYLIKLELLNWFKQDFFKWVNNPPCNKCGGETSSGLGNQPPNEEEKKFGAGRVEIY-----------------KCN 198 (500)
T ss_pred hhhcchHHHHHHHHHHHHhhheecCCCCcccccccccccccCCCCchhHhhcCCceEEEE-----------------Eec
Confidence 346777763 344 3323346999999995 23344477777654 699
Q ss_pred cccCcccceee
Q psy16434 87 LCGNEYKFRNF 97 (745)
Q Consensus 87 ~~~~~~~~~~~ 97 (745)
-||++-+|-.+
T Consensus 199 ~C~~~~RFPRY 209 (500)
T KOG0909|consen 199 RCGTETRFPRY 209 (500)
T ss_pred CCCCcccCccc
Confidence 99999999654
No 111
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=40.25 E-value=60 Score=36.19 Aligned_cols=52 Identities=10% Similarity=0.157 Sum_probs=40.6
Q ss_pred HHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeCC-------HHHHHHHHHHhCCe
Q psy16434 648 IKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNS-------KFDLRRLCKAVNAT 699 (745)
Q Consensus 648 V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~-------k~dLeRIaraTGA~ 699 (745)
+++|++++|||||....-.+...+.|.+.||.++..-. .+.++.+++++|-.
T Consensus 112 ~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 112 VEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred HHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 78899999999998765556678889999999876432 14567889999874
No 112
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=39.28 E-value=58 Score=34.81 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=41.8
Q ss_pred HHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeC--C----HHHHHHHHHHhCCe
Q psy16434 648 IKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLN--S----KFDLRRLCKAVNAT 699 (745)
Q Consensus 648 V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v--~----k~dLeRIaraTGA~ 699 (745)
+++|+++.||+||...+.++...+.|.+.||-++-.- + ...++.+++++|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 7889999999999988888888899999998775321 1 23578999999964
No 113
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=39.22 E-value=85 Score=28.39 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=27.5
Q ss_pred cCCcEEEeCCcccHHHHHHHHHcCCeEEEeCC
Q psy16434 654 TGANVVVAGAKFGDMALHYLNKYGLMGVRLNS 685 (745)
Q Consensus 654 ~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~ 685 (745)
.+|++|++. +|.+.|...|.++||-+++--.
T Consensus 64 ~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 64 SDCDAVLCA-KIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred cCCcEEeeh-hhCccHHHHHHHCCCEEEEecC
Confidence 699999886 9999999999999999996544
No 114
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=38.64 E-value=10 Score=25.65 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=19.8
Q ss_pred eeeEeeecCcchhhhhhhhhhhhhhcc
Q psy16434 41 TYQCLVCKNKTLFHDLAEGARHVERHH 67 (745)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (745)
+|+|.+|+. .|.++..-.+|...|+
T Consensus 1 ~~~C~~C~~--~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGK--TFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTE--EESSHHHHHHHHCTTT
T ss_pred CCCCCccCC--ccCChhHHHHHhHHhc
Confidence 699999975 4788888888886554
No 115
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=36.53 E-value=1.1e+02 Score=27.43 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=27.8
Q ss_pred cCCcEEEeCCcccHHHHHHHHHcCCeEEEeCC
Q psy16434 654 TGANVVVAGAKFGDMALHYLNKYGLMGVRLNS 685 (745)
Q Consensus 654 ~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~ 685 (745)
.++++||+. +|.+.|...|.++||.++.-..
T Consensus 60 ~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 60 EDCAILYCA-AIGGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred CCCcEEEEh-hcChhHHHHHHHcCCEEEEcCC
Confidence 599998885 9999999999999999997665
No 116
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=35.62 E-value=1.1e+02 Score=34.08 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecc
Q psy16434 645 EEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALP 702 (745)
Q Consensus 645 ~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivs 702 (745)
.++++.+++.+|.+|+..++..+. .+.|.++||.++-.|.--..-+-+...|++.+.
T Consensus 72 ~~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~vV 128 (320)
T cd04743 72 AAQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKFI 128 (320)
T ss_pred HHHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEE
Confidence 457888899999999998887765 588999999999877755444557778988663
No 117
>PTZ00085 40S ribosomal protein S28; Provisional
Probab=33.30 E-value=20 Score=30.96 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=24.2
Q ss_pred cccccccceeeeeehHhhhc---cCceeeec
Q psy16434 132 MATVPYTGITLLKVVREIRR---RGAFRTVY 159 (745)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~---~g~~~~~~ 159 (745)
+.+++++.+++++|.++|-| ||-++||.
T Consensus 2 ~~~~~~~~~~~A~VikVlGRTG~~G~~tQVr 32 (73)
T PTZ00085 2 VVTQDTEQPKLAKVIKVLGRTGSRGGVTQVR 32 (73)
T ss_pred cceecccCceeEEEEEEeccccCcccEEEEE
Confidence 45678999999999999999 88899993
No 118
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=32.62 E-value=1.3e+02 Score=28.08 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=36.1
Q ss_pred cCCcEEEeCCcccHHHHHHHHHcCCeEEEeCC----HHHHHHHHHHhCCe
Q psy16434 654 TGANVVVAGAKFGDMALHYLNKYGLMGVRLNS----KFDLRRLCKAVNAT 699 (745)
Q Consensus 654 ~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~----k~dLeRIaraTGA~ 699 (745)
.||++||+. +|...|...|.+.||-+++--. .+.|+++.+.+-..
T Consensus 62 ~~c~vvi~~-~IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~~~ 110 (119)
T TIGR02663 62 KDCAILYCL-AIGGPAAAKVVAAKIHPIKVNEPESISELLERLQKMLKGN 110 (119)
T ss_pred CCCcEEEEh-hcCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHHcCC
Confidence 699999996 9999999999999999997433 45667777766444
No 119
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=32.42 E-value=22 Score=34.70 Aligned_cols=43 Identities=30% Similarity=0.531 Sum_probs=29.0
Q ss_pred eeeccceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccc
Q psy16434 35 YFTRNQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKF 94 (745)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (745)
|-+.++.|.|+.|+.+--|-|..+ ...|+ ..|.|+.||.+-.+
T Consensus 93 ~e~~~~~Y~Cp~C~~~y~~~ea~~---------~~d~~--------~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 93 DETNNAYYKCPNCQSKYTFLEANQ---------LLDMD--------GTFTCPRCGEELEE 135 (147)
T ss_pred cccCCcEEECcCCCCEeeHHHHHH---------hcCCC--------CcEECCCCCCEEEE
Confidence 345678999999998877754221 11121 45999999987643
No 120
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=32.28 E-value=17 Score=23.95 Aligned_cols=23 Identities=39% Similarity=0.764 Sum_probs=15.5
Q ss_pred eeEeeecCcchhhhhhhhhhhhhhcc
Q psy16434 42 YQCLVCKNKTLFHDLAEGARHVERHH 67 (745)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (745)
|+|..|.-.+- -.+-.+|+++||
T Consensus 1 y~C~~C~y~t~---~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS---KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES---HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC---HHHHHHHHHhhC
Confidence 89999987774 234567888876
No 121
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=31.96 E-value=98 Score=30.47 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=37.5
Q ss_pred HHHHHHcCCcEEEeCCcccHH-HHHHHHHcCCeEEEeC-----C--HHHHHHHHHHhC
Q psy16434 648 IKAIADTGANVVVAGAKFGDM-ALHYLNKYGLMGVRLN-----S--KFDLRRLCKAVN 697 (745)
Q Consensus 648 V~~I~~~gvnVVl~~~~I~d~-al~~L~k~gIl~ir~v-----~--k~dLeRIaraTG 697 (745)
+++|++++|||||......+. ..+.|.+.||-++-.- . ..+++.+++.+|
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~~~~~~~~~~~i~~~g~~~g 119 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNEYPSPLGRAEWIKFAAAFYG 119 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCCCCChhhHHHHHHHHHHHcC
Confidence 788999999999987666554 7888999998554332 1 234788888888
No 122
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=31.82 E-value=97 Score=31.93 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=38.5
Q ss_pred HHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeC----CHHHHHHHHHHhCCe
Q psy16434 648 IKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLN----SKFDLRRLCKAVNAT 699 (745)
Q Consensus 648 V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v----~k~dLeRIaraTGA~ 699 (745)
+++|++++||+||+.....+ ..+.|.+.|..++-.. -.+.++++++++|..
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~~ 113 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNKE 113 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCcH
Confidence 78889999999999877666 7778888885554222 245789999999874
No 123
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=30.70 E-value=20 Score=24.54 Aligned_cols=23 Identities=30% Similarity=0.917 Sum_probs=16.7
Q ss_pred hhhhhhccCCCCCCCceEEeecchhhccccCccc
Q psy16434 60 ARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYK 93 (745)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (745)
.+|+..|.=+.| |.|+.|+..|+
T Consensus 3 ~~H~~~H~~~k~-----------~~C~~C~k~F~ 25 (26)
T PF13465_consen 3 RRHMRTHTGEKP-----------YKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHSSSSS-----------EEESSSSEEES
T ss_pred HHHhhhcCCCCC-----------CCCCCCcCeeC
Confidence 367777775544 78999997653
No 124
>PHA00733 hypothetical protein
Probab=29.89 E-value=26 Score=33.50 Aligned_cols=39 Identities=23% Similarity=0.646 Sum_probs=20.3
Q ss_pred ceeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCccc
Q psy16434 40 QTYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYK 93 (745)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (745)
.+|+|..|... |...+.-.+|.+.|. ..|.|+.||..|.
T Consensus 72 kPy~C~~Cgk~--Fss~s~L~~H~r~h~-------------~~~~C~~CgK~F~ 110 (128)
T PHA00733 72 SPYVCPLCLMP--FSSSVSLKQHIRYTE-------------HSKVCPVCGKEFR 110 (128)
T ss_pred CCccCCCCCCc--CCCHHHHHHHHhcCC-------------cCccCCCCCCccC
Confidence 35666666543 444444445554431 0257777776654
No 125
>PF12846 AAA_10: AAA-like domain
Probab=29.69 E-value=1.3e+02 Score=31.30 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEeCCcccHHH-----HHHHHHcCCeEEEeCCHHHHHHHHHHhCCe
Q psy16434 641 ENQLEEQIKAIADTGANVVVAGAKFGDMA-----LHYLNKYGLMGVRLNSKFDLRRLCKAVNAT 699 (745)
Q Consensus 641 ~~~i~~~V~~I~~~gvnVVl~~~~I~d~a-----l~~L~k~gIl~ir~v~k~dLeRIaraTGA~ 699 (745)
.+.+.++++...+.|+.+++..+.++++. ...+...+...+-++...+.+.+++..|-+
T Consensus 239 ~~~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~l~~~~gl~ 302 (304)
T PF12846_consen 239 AEFLDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAELAELFGLT 302 (304)
T ss_pred hhhhhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHHHHHHcCcC
Confidence 45677788888999999999999999999 899999999999999999998899998864
No 126
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=29.01 E-value=1.8e+02 Score=31.91 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecc
Q psy16434 645 EEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALP 702 (745)
Q Consensus 645 ~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivs 702 (745)
.++++.+++.++++|....+..+...+.+.++|+.++-.+.--+.-+-+...|++.+.
T Consensus 77 ~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Iv 134 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVI 134 (307)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEE
Confidence 4567888889999998888877778889999999998777655555556667988774
No 127
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=27.65 E-value=1.1e+02 Score=32.23 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=38.9
Q ss_pred HHHHHHcCCcEEEeCCc-ccHHHHHHHHHcCCeEEEeC--CH----HHHHHHHHHhCCe
Q psy16434 648 IKAIADTGANVVVAGAK-FGDMALHYLNKYGLMGVRLN--SK----FDLRRLCKAVNAT 699 (745)
Q Consensus 648 V~~I~~~gvnVVl~~~~-I~d~al~~L~k~gIl~ir~v--~k----~dLeRIaraTGA~ 699 (745)
+++|++++||+|+...+ -.....+.|.+.||.++..- +. ..++.+++++|..
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~lg~~~g~~ 123 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQP 123 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHcCCH
Confidence 77889999999998643 34556688899999887653 22 3468888888864
No 128
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.14 E-value=3.4e+02 Score=28.53 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEE-EeCCHHHHHHHHHHhCCeecccC
Q psy16434 645 EEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGV-RLNSKFDLRRLCKAVNATALPRL 704 (745)
Q Consensus 645 ~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~i-r~v~k~dLeRIaraTGA~ivssl 704 (745)
.+.++..++.|++.+++- ++++...+++.++||..+ .....+|+.. |...|++++.=+
T Consensus 81 ~e~a~~a~~aGA~FiVsP-~~~~~v~~~~~~~~i~~iPG~~TpsEi~~-A~~~Ga~~vKlF 139 (222)
T PRK07114 81 AATAALYIQLGANFIVTP-LFNPDIAKVCNRRKVPYSPGCGSLSEIGY-AEELGCEIVKLF 139 (222)
T ss_pred HHHHHHHHHcCCCEEECC-CCCHHHHHHHHHcCCCEeCCCCCHHHHHH-HHHCCCCEEEEC
Confidence 467888999999997776 799999999999999999 6778999988 888899887433
No 129
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=26.76 E-value=15 Score=29.56 Aligned_cols=44 Identities=27% Similarity=0.607 Sum_probs=24.7
Q ss_pred eeeEeeecCcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcc
Q psy16434 41 TYQCLVCKNKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEY 92 (745)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (745)
.|+|.+|+- .+|-++|-. .+.-|..-..--+.|.|.|+.||-.-
T Consensus 1 ~y~C~~Cgy---iYd~~~Gd~-----~~~i~pGt~f~~Lp~~w~CP~C~a~K 44 (50)
T cd00730 1 KYECRICGY---IYDPAEGDP-----DEGIPPGTPFEDLPDDWVCPVCGAGK 44 (50)
T ss_pred CcCCCCCCe---EECCCCCCc-----ccCcCCCCCHhHCCCCCCCCCCCCcH
Confidence 389999982 234333322 12222222222367889999999654
No 130
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=26.67 E-value=2.1e+02 Score=29.46 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=43.9
Q ss_pred HHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEE-EeCCHHHHHHHHHHhCCeecccC
Q psy16434 647 QIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGV-RLNSKFDLRRLCKAVNATALPRL 704 (745)
Q Consensus 647 ~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~i-r~v~k~dLeRIaraTGA~ivssl 704 (745)
.+++.++.|++.+++- ++++...+++.++||..+ .....+|+.+ |.-.|++++.=|
T Consensus 72 ~a~~a~~aGA~FivSP-~~~~~v~~~~~~~~i~~iPG~~TptEi~~-A~~~G~~~vK~F 128 (196)
T PF01081_consen 72 QAEAAIAAGAQFIVSP-GFDPEVIEYAREYGIPYIPGVMTPTEIMQ-ALEAGADIVKLF 128 (196)
T ss_dssp HHHHHHHHT-SEEEES-S--HHHHHHHHHHTSEEEEEESSHHHHHH-HHHTT-SEEEET
T ss_pred HHHHHHHcCCCEEECC-CCCHHHHHHHHHcCCcccCCcCCHHHHHH-HHHCCCCEEEEe
Confidence 3666778999998887 799999999999999999 5888999988 788899987443
No 131
>cd01140 FatB Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.23 E-value=1.4e+02 Score=31.09 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=37.9
Q ss_pred HHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeCCH-------HHHHHHHHHhCCe
Q psy16434 648 IKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSK-------FDLRRLCKAVNAT 699 (745)
Q Consensus 648 V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~k-------~dLeRIaraTGA~ 699 (745)
.++|++++||||+....-++...++....++.++..-.. ..++.+++++|-.
T Consensus 65 ~E~i~al~PDlvi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~lg~~~g~~ 123 (270)
T cd01140 65 LEAIAALKPDLIIIGGRLAEKYDELKKIAPTIDLGADLKNYLESVKQNIETLGKIFGKE 123 (270)
T ss_pred HHHHhcCCCCEEEECCccHHHHHHHHHhCCeeEEecCchHHHHHHHHHHHHHHHHhCcH
Confidence 678889999999987665666666666777777753222 2588999999863
No 132
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.00 E-value=3e+02 Score=28.48 Aligned_cols=57 Identities=14% Similarity=0.091 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEE-EeCCHHHHHHHHHHhCCeecccC
Q psy16434 646 EQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGV-RLNSKFDLRRLCKAVNATALPRL 704 (745)
Q Consensus 646 ~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~i-r~v~k~dLeRIaraTGA~ivssl 704 (745)
+.++..++.|++.+++- ++++...+++.++||..+ .....+|+.. |...||+++.=|
T Consensus 67 e~a~~ai~aGA~FivSP-~~~~~vi~~a~~~~i~~iPG~~TptEi~~-A~~~Ga~~vK~F 124 (201)
T PRK06015 67 KQFEDAAKAGSRFIVSP-GTTQELLAAANDSDVPLLPGAATPSEVMA-LREEGYTVLKFF 124 (201)
T ss_pred HHHHHHHHcCCCEEECC-CCCHHHHHHHHHcCCCEeCCCCCHHHHHH-HHHCCCCEEEEC
Confidence 45788889999998776 789999999999999999 6777999988 888999987543
No 133
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=25.59 E-value=1.5e+02 Score=32.24 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=39.0
Q ss_pred HHHHHHcCCcEEEeCCcc-----cHHHHHHHHHcCCeEEEeC--------CHHHHHHHHHHhCCe
Q psy16434 648 IKAIADTGANVVVAGAKF-----GDMALHYLNKYGLMGVRLN--------SKFDLRRLCKAVNAT 699 (745)
Q Consensus 648 V~~I~~~gvnVVl~~~~I-----~d~al~~L~k~gIl~ir~v--------~k~dLeRIaraTGA~ 699 (745)
+++|++++||+||..... ..-..+.|.+.||-++..- -.+.++.+++++|-.
T Consensus 84 ~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~i~~lg~i~g~~ 148 (342)
T cd01139 84 VEKVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDFRQKPLKNTTPSMRLLGKALGRE 148 (342)
T ss_pred HHHHhhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeCCCchhhhHHHHHHHHHHHhCCH
Confidence 778899999999986543 2456788899998876532 134689999999974
No 134
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=25.35 E-value=2.8e+02 Score=26.26 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=43.3
Q ss_pred HHHHcCCcEEEeCCcc------cHHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCe
Q psy16434 650 AIADTGANVVVAGAKF------GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNAT 699 (745)
Q Consensus 650 ~I~~~gvnVVl~~~~I------~d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ 699 (745)
.+...++.+|+++-|+ ++.|.+||.+.++-++.-..++-++|.-+.-|+.
T Consensus 56 ~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~k 111 (121)
T COG1504 56 ELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGKK 111 (121)
T ss_pred HHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhccc
Confidence 3444799999998764 8999999999999999999999999999988874
No 135
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=25.06 E-value=33 Score=37.73 Aligned_cols=16 Identities=13% Similarity=0.303 Sum_probs=11.5
Q ss_pred eeeEeeecCcchhhhh
Q psy16434 41 TYQCLVCKNKTLFHDL 56 (745)
Q Consensus 41 ~~~~~~~~~~~~~~~~ 56 (745)
.-.|+||+.....--+
T Consensus 184 ~~~CPvCGs~P~~s~~ 199 (305)
T TIGR01562 184 RTLCPACGSPPVASMV 199 (305)
T ss_pred CCcCCCCCChhhhhhh
Confidence 3469999998765444
No 136
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=24.82 E-value=3.5e+02 Score=28.09 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEE-EeCCHHHHHHHHHHhCCeeccc
Q psy16434 645 EEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGV-RLNSKFDLRRLCKAVNATALPR 703 (745)
Q Consensus 645 ~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~i-r~v~k~dLeRIaraTGA~ivss 703 (745)
.+.++..++.|++.+++- +.++...+++.++|+..+ ......|+.. |...||+++.=
T Consensus 70 ~~~a~~a~~aGA~FivsP-~~~~~v~~~~~~~~i~~iPG~~TptEi~~-A~~~Ga~~vKl 127 (204)
T TIGR01182 70 PEQLRQAVDAGAQFIVSP-GLTPELAKHAQDHGIPIIPGVATPSEIML-ALELGITALKL 127 (204)
T ss_pred HHHHHHHHHcCCCEEECC-CCCHHHHHHHHHcCCcEECCCCCHHHHHH-HHHCCCCEEEE
Confidence 345788889999998766 678899999999999999 6678999988 88899988743
No 137
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.27 E-value=3.6e+02 Score=27.99 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEE-EeCCHHHHHHHHHHhCCeeccc
Q psy16434 645 EEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGV-RLNSKFDLRRLCKAVNATALPR 703 (745)
Q Consensus 645 ~~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~i-r~v~k~dLeRIaraTGA~ivss 703 (745)
.+.++..++.|++.+++- ++++...+++.++||..+ ...+.+|+.+ |...|++++.=
T Consensus 78 ~~~~~~a~~aGA~FivsP-~~~~~v~~~~~~~~i~~iPG~~T~~E~~~-A~~~Gad~vkl 135 (213)
T PRK06552 78 AVTARLAILAGAQFIVSP-SFNRETAKICNLYQIPYLPGCMTVTEIVT-ALEAGSEIVKL 135 (213)
T ss_pred HHHHHHHHHcCCCEEECC-CCCHHHHHHHHHcCCCEECCcCCHHHHHH-HHHcCCCEEEE
Confidence 456888899999997755 889999999999999999 5667888877 46799998863
No 138
>KOG3576|consensus
Probab=23.28 E-value=19 Score=37.14 Aligned_cols=30 Identities=30% Similarity=0.690 Sum_probs=16.6
Q ss_pred hhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCccc
Q psy16434 53 FHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYK 93 (745)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (745)
|||--.--||+..|.--.| |.|++|++.|.
T Consensus 155 fndtfdlkrh~rthtgvrp-----------ykc~~c~kaft 184 (267)
T KOG3576|consen 155 FNDTFDLKRHTRTHTGVRP-----------YKCSLCEKAFT 184 (267)
T ss_pred ccchhhhhhhhccccCccc-----------cchhhhhHHHH
Confidence 5555555566665555444 44666665543
No 139
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=23.10 E-value=30 Score=28.10 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=18.5
Q ss_pred eccceeeEeeecCcchhhhhhhhhhhhhhccCCCCC
Q psy16434 37 TRNQTYQCLVCKNKTLFHDLAEGARHVERHHWDQPD 72 (745)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (745)
..+|+-.|.+|+-- +---..--||.|.+|.-.|+
T Consensus 20 ~S~~PatCP~C~a~--~~~srnLrRHle~~H~~k~~ 53 (54)
T PF09237_consen 20 QSEQPATCPICGAV--IRQSRNLRRHLEIRHFKKPG 53 (54)
T ss_dssp TTS--EE-TTT--E--ESSHHHHHHHHHHHTTTS--
T ss_pred ccCCCCCCCcchhh--ccchhhHHHHHHHHhcccCC
Confidence 34688899999742 22223346899999998876
No 140
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=22.68 E-value=8.7 Score=32.47 Aligned_cols=52 Identities=27% Similarity=0.606 Sum_probs=28.5
Q ss_pred eeEeeecCcch-hhhhhhhhhhhhhccCCCCCCCc-------eEEeecchhhccccCccccee
Q psy16434 42 YQCLVCKNKTL-FHDLAEGARHVERHHWDQPDKNS-------LFVISDRFLCNLCGNEYKFRN 96 (745)
Q Consensus 42 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 96 (745)
-.|.+||. .| +.-|.+.|+ ..... -.+.+.. .-++.....|..||..|..++
T Consensus 8 L~Cp~ck~-pL~~~~l~~~~~-~~~~~-lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~d 67 (68)
T PF03966_consen 8 LACPVCKG-PLDWEALVETAQ-LGLSE-LPKELPEDYHVLLEVEIVEGELICPECGREYPIRD 67 (68)
T ss_dssp BB-TTTSS-BEHHHHHHHHHH-CCCCH-CHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEET
T ss_pred hcCCCCCC-cchHHHHHHHHH-hCccc-CCCCCccchhhhhcccccCCEEEcCCCCCEEeCCC
Confidence 46888998 55 455555555 21111 1111100 234556778999999997664
No 141
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=22.59 E-value=1.8e+02 Score=26.18 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=34.7
Q ss_pred HHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeCC-----HH----HHHHHHHHhC
Q psy16434 648 IKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNS-----KF----DLRRLCKAVN 697 (745)
Q Consensus 648 V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~-----k~----dLeRIaraTG 697 (745)
++.|++++||+||..++..+.....+.+.||-++.... .. .++.++..+|
T Consensus 54 ~E~l~~l~pDlvi~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~i~~lg~~~~ 112 (148)
T cd00636 54 LEKIAALKPDLIIANGSGLEAWLDKLSKIAIPVVVVDEASELSLENIKESIRLIGKALG 112 (148)
T ss_pred HHHHhccCCCEEEEecccchhHHHHHHHhCCCEEEECCCCcCCHHHHHHHHHHHHHHHC
Confidence 66777889999999987766667778888865554332 33 3456666665
No 142
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=22.56 E-value=1.9e+02 Score=29.19 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=40.7
Q ss_pred HHHHHHcCCcEEEeCCcc-cHHHHHHHHHcCCeEEEeCCH-------HHHHHHHHHhCCe
Q psy16434 648 IKAIADTGANVVVAGAKF-GDMALHYLNKYGLMGVRLNSK-------FDLRRLCKAVNAT 699 (745)
Q Consensus 648 V~~I~~~gvnVVl~~~~I-~d~al~~L~k~gIl~ir~v~k-------~dLeRIaraTGA~ 699 (745)
+++|++++||+||..... .......+.+.||-++-.-.. +.++.|++++|..
T Consensus 53 ~E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 53 LEAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 478889999999998888 677778888999999865553 3678999999975
No 143
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=22.49 E-value=2.1e+02 Score=31.54 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCcEEEeCCccc-HHHHHHHHHcCCeEEEeCCHHHHHHHHHHhCCeecc
Q psy16434 644 LEEQIKAIADTGANVVVAGAKFG-DMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALP 702 (745)
Q Consensus 644 i~~~V~~I~~~gvnVVl~~~~I~-d~al~~L~k~gIl~ir~v~k~dLeRIaraTGA~ivs 702 (745)
++.+++.+.+.++++|....|.- +...+.+.++||.++-.|.--.-=+.+...|++++.
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~iv 161 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGADAIV 161 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEE
T ss_pred cccccccccccceEEEEeecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEEE
Confidence 77889999999999998888777 788889999999999777755444456666888764
No 144
>PHA00733 hypothetical protein
Probab=21.73 E-value=27 Score=33.40 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=26.2
Q ss_pred eeeEeeec----CcchhhhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccc
Q psy16434 41 TYQCLVCK----NKTLFHDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKF 94 (745)
Q Consensus 41 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (745)
.|.|.+|+ |+.++.+-..-.+| -++||+.| |.|..||..|.-
T Consensus 40 ~~~~~~~~~~~~~~~~l~~~~~l~~~-~~~~~~kP-----------y~C~~Cgk~Fss 85 (128)
T PHA00733 40 RLIRAVVKTLIYNPQLLDESSYLYKL-LTSKAVSP-----------YVCPLCLMPFSS 85 (128)
T ss_pred hHHHHHHhhhccChhhhcchHHHHhh-cccCCCCC-----------ccCCCCCCcCCC
Confidence 57899997 34444443333344 35555544 789999988653
No 145
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=21.54 E-value=2.2e+02 Score=29.43 Aligned_cols=52 Identities=21% Similarity=0.209 Sum_probs=37.1
Q ss_pred HHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeCC--HH----HHHHHHHHhCCe
Q psy16434 648 IKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNS--KF----DLRRLCKAVNAT 699 (745)
Q Consensus 648 V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~--k~----dLeRIaraTGA~ 699 (745)
+++|++++||+||..+...+.....|.+.+..++-... .. .++.+++++|..
T Consensus 58 ~E~i~~l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~lg~~~g~~ 115 (256)
T cd01146 58 LEAIAALKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRLIAKALGKE 115 (256)
T ss_pred HHHHHhcCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHHHHHHhCcH
Confidence 77889999999999887766555666776544443332 23 478899999865
No 146
>PRK14812 hypothetical protein; Provisional
Probab=21.21 E-value=2.1e+02 Score=27.23 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=41.4
Q ss_pred HHHHHHHHcCCcEEEeCCcccHHHHHHHHHcCCeEEEeCCHHHHHHHHHH
Q psy16434 646 EQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKA 695 (745)
Q Consensus 646 ~~V~~I~~~gvnVVl~~~~I~d~al~~L~k~gIl~ir~v~k~dLeRIara 695 (745)
.-+..+...|+.+|+.. ++.+..-.-+.+.|++.+. +++..+++|...
T Consensus 8 hA~wAL~~~Gi~aVIA~-SFa~IF~~N~~nnGllpi~-~~~~~~~~l~~~ 55 (119)
T PRK14812 8 HAAWALADYGFKVVIAG-SFGDIHYNNELNNGMLPIV-QPREVREKLAQL 55 (119)
T ss_pred HHHHHHHHcCCCEEEEc-hHHHHHHhHHHHCCCCccc-CCHHHHHHHhcc
Confidence 44778999999998776 9999999999999998886 788889988875
No 147
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=20.99 E-value=2.1e+02 Score=29.21 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=38.5
Q ss_pred HHHHHHcCCcEEEeCCc-ccHHHHHHHHHcCCeEEEeC---CH----HHHHHHHHHhCCe
Q psy16434 648 IKAIADTGANVVVAGAK-FGDMALHYLNKYGLMGVRLN---SK----FDLRRLCKAVNAT 699 (745)
Q Consensus 648 V~~I~~~gvnVVl~~~~-I~d~al~~L~k~gIl~ir~v---~k----~dLeRIaraTGA~ 699 (745)
+++|+++.||+|+.... .++...+.|.+.||-++..- .. +.++.+++.+|-.
T Consensus 51 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~~~lg~i~g~e 110 (235)
T cd01149 51 AEGVLSLKPTLVIASDEAGPPEALDQLRAAGVPVVTVPSTPTLDGLLTKIRQVAQALGVP 110 (235)
T ss_pred HHHhhccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHHhCCH
Confidence 58899999999999764 34557788999999876532 22 2467888888874
No 148
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=20.89 E-value=38 Score=35.24 Aligned_cols=51 Identities=25% Similarity=0.471 Sum_probs=30.6
Q ss_pred ceeeEeeecCcchhhhhhhhhhhhhhccCCC----CCCCceEEeecchhhccccCcc
Q psy16434 40 QTYQCLVCKNKTLFHDLAEGARHVERHHWDQ----PDKNSLFVISDRFLCNLCGNEY 92 (745)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 92 (745)
.+++|+||++..---.+-.|.-.+.+..-|- .+-|.+| -+-..|+.||-..
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~--Y~V~vCP~CgyA~ 58 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLF--YEVWVCPHCGYAA 58 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCee--eeEEECCCCCCcc
Confidence 5789999998765555555554454443332 1234443 2456899999543
No 149
>KOG3623|consensus
Probab=20.56 E-value=61 Score=39.34 Aligned_cols=43 Identities=28% Similarity=0.685 Sum_probs=33.0
Q ss_pred cceeeEeeecCcchh-hhhhhhhhhhhhccCCCCCCCceEEeecchhhccccCcccce
Q psy16434 39 NQTYQCLVCKNKTLF-HDLAEGARHVERHHWDQPDKNSLFVISDRFLCNLCGNEYKFR 95 (745)
Q Consensus 39 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (745)
|..|+|..|+..--| |-|-| |+..|.-..| |-|.-|++.|.--
T Consensus 279 lRKFKCtECgKAFKfKHHLKE---HlRIHSGEKP-----------feCpnCkKRFSHS 322 (1007)
T KOG3623|consen 279 LRKFKCTECGKAFKFKHHLKE---HLRIHSGEKP-----------FECPNCKKRFSHS 322 (1007)
T ss_pred hccccccccchhhhhHHHHHh---hheeecCCCC-----------cCCcccccccccC
Confidence 557899999865444 77765 7888887766 8899999987643
Done!