RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16434
(745 letters)
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, theta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 472
Score = 534 bits (1377), Expect = 0.0
Identities = 223/508 (43%), Positives = 293/508 (57%), Gaps = 130/508 (25%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
+H+SGLEEAV RNI ACK+ + RT+YGPNGMNK+VINH++KLFVT+DAATI+RELE++
Sbjct: 1 RHYSGLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQ 60
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAAKL LV A SQMQEE
Sbjct: 61 HPAAKL--------------------------LVMA------------------SQMQEE 76
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
E+GDGTN V++ AG LL A+ LLRMGL PSEI+ GY+ AL K LEIL L ++++D+R
Sbjct: 77 EIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLR 136
Query: 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN 419
N E V+K +K+AI SKQYGNEDFL+ L+ +AC+S+LP+ +FNVDN+R+ KILG L +
Sbjct: 137 NKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLED 196
Query: 420 SEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDI-------------------------- 453
S++V+GMVFKR EG + + KAK+AV++CP DI
Sbjct: 197 SKVVRGMVFKREPEGSVKRVKKAKVAVFSCPFDIGVNVIVAGGSVGDLALHYCNKYGIMV 256
Query: 454 -----------------ATTETK-TPPAASELGYADSVAVDELGDTAVVVFKLEAAESRI 495
AT + P E+GY DSV V+E+GDT VVVF+ +S+I
Sbjct: 257 IKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKI 316
Query: 496 ATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------------------- 527
AT+V+RGAT+N +DD+ERA+DDGVN FK +TK
Sbjct: 317 ATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPG 376
Query: 528 --------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDA 573
V +TLAEN G+ + EV+S+LY+AH +G K+ G DI + DA
Sbjct: 377 LEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDA 436
Query: 574 AEAGILDLYLTKMWALKYATSAANTILQ 601
EAGI D TK WA+K AT AA T+L+
Sbjct: 437 KEAGIFDHLATKKWAIKLATEAAVTVLR 464
Score = 105 bits (264), Expect = 6e-24
Identities = 42/108 (38%), Positives = 56/108 (51%), Gaps = 38/108 (35%)
Query: 597 NTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGA 656
++ + KAK+AV++CP DI G
Sbjct: 211 GSVKRVKKAKVAVFSCPFDI--------------------------------------GV 232
Query: 657 NVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
NV+VAG GD+ALHY NKYG+M +++NSKF+LRRLC+ V AT LPRL
Sbjct: 233 NVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRL 280
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 347 bits (891), Expect = e-111
Identities = 138/280 (49%), Positives = 188/280 (67%), Gaps = 44/280 (15%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
+H SGLEEAV +NI ACK+ + RT+ GPNGMNK+VINH+DKLFVTNDAATI+RELE++
Sbjct: 11 RHMSGLEEAVIKNIEACKELSQITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQ 70
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAAKL+++ S+MQE E+
Sbjct: 71 HPAAKLLVMASEMQENEI------------------------------------------ 88
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
GDGTN VI+ AG LL A+ L+RMGL PSEI+ GY++AL K +E+L L +E++D+R
Sbjct: 89 --GDGTNLVIVLAGELLNKAEELIRMGLHPSEIIKGYEMALKKAMEVLEELVVWEIEDLR 146
Query: 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN 419
+ + + K +K++I SKQYGNEDFL+ L+ KAC ++LP +FNVDN+R+ KI+G L N
Sbjct: 147 DKKELIKALKASISSKQYGNEDFLSQLVAKACSTVLPKNPQNFNVDNIRVVKIMGGSLSN 206
Query: 420 SEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
SE+++GMVF R EG + + KAK+AV++CP+D ATTETK
Sbjct: 207 SEVIKGMVFNREAEGSVKRVKKAKVAVFSCPLDTATTETK 246
Score = 172 bits (438), Expect = 3e-46
Identities = 69/110 (62%), Positives = 90/110 (81%)
Query: 595 AANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADT 654
A ++ + KAK+AV++CP+D ATTETKGTVLI +A+EL+ +S+GEENQ+E IKAIAD+
Sbjct: 219 AEGSVKRVKKAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAMIKAIADS 278
Query: 655 GANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
G NV+V G GDMALHYLN+YG+M +++ SKF+LRRLCK V AT LPRL
Sbjct: 279 GVNVIVTGGSVGDMALHYLNRYGIMVLKIPSKFELRRLCKTVGATPLPRL 328
Score = 167 bits (424), Expect = 2e-44
Identities = 75/183 (40%), Positives = 98/183 (53%), Gaps = 42/183 (22%)
Query: 460 TPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV 519
P ELGY DSV V E+G V VFK E +SRI+T+++RG+T+N +DDIERA+DDGV
Sbjct: 329 GAPTPEELGYVDSVYVSEIGGDKVTVFKQENGDSRISTIILRGSTKNLLDDIERAIDDGV 388
Query: 520 NTFKGITK------------------------------------------VFVKTLAENT 537
N K + K + +TLAEN
Sbjct: 389 NVVKALVKDGRFLPGAGATEIELASRLTKYAEKTPGLDQYAIKKFAEAFEIIPRTLAENA 448
Query: 538 GVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAAN 597
G+ NEVI KLY+AH +G + G DI E+ V DA+EAGI D+ TK +A+K AT AA
Sbjct: 449 GLNPNEVIPKLYAAHKKGNTSKGIDIEAESDGVKDASEAGIYDMLATKKFAIKLATEAAV 508
Query: 598 TIL 600
T+L
Sbjct: 509 TVL 511
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 316 bits (812), Expect = e-100
Identities = 138/511 (27%), Positives = 219/511 (42%), Gaps = 144/511 (28%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
K EEA NI+A K AD V+T GP GM+K++++ + +TND ATI++E+E+E
Sbjct: 1 KEREFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVE 60
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAAKL++ E+ ++ Q++
Sbjct: 61 HPAAKLLV--------EV------------------------------------AKSQDD 76
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTL-TCFEVKDV 358
E+GDGT V++ AG LL A+ LL G+ P+EI+ GY+ A+ K LEIL + +V+D
Sbjct: 77 EVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDR 136
Query: 359 RNVENVTKGIKSAIMSKQ-YGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGL 417
+ V +++ SK G +DFL +L+ A + + + ++ +R+ K G L
Sbjct: 137 EELLKV---ATTSLNSKLVSGGDDFLGELVVDAVLKVGKEN-GDVDLGVIRVEKKKGGSL 192
Query: 418 FNSEIVQGMVFKRSVEGDI--TKQTKAKIAVYTCPVD----------------------- 452
+SE+V GMVF + + AKI + C ++
Sbjct: 193 EDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEYVVIAEKGIDDEALHYLAKLGIM 252
Query: 453 ---------------------IATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAA 491
++ E TP +LG A V ++GD +
Sbjct: 253 AVRRVRKEDLERIAKATGATIVSRLEDLTP---EDLGTAGLVEETKIGDEKYTFIE-GCK 308
Query: 492 ESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK------------------------ 527
++AT+++RGATE +D+ ER++ D + + +
Sbjct: 309 GGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAK 368
Query: 528 ------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSS 569
V +TLAEN G+ EV++KL + H EG G D+ E
Sbjct: 369 TLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDV--ETGE 426
Query: 570 VIDAAEAGILDLYLTKMWALKYATSAANTIL 600
++D EAGI+D K ALK AT AA+ IL
Sbjct: 427 IVDMKEAGIIDPLKVKRQALKSATEAASLIL 457
Score = 65.9 bits (162), Expect = 3e-11
Identities = 63/263 (23%), Positives = 90/263 (34%), Gaps = 95/263 (36%)
Query: 476 DELGD--TAVVVFK---LEAAESRIA-----TLVIRGATENYMDDIERAVDDGVNTFKGI 525
DE+GD T VVV L+ AE +A T +IRG E+AV+ +
Sbjct: 76 DEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRG--------YEKAVEKALE----- 122
Query: 526 TKVFVKTLAENTGVKSNEVI---------SKLYSAHNE-------------GKKTYGFDI 563
+K +A V+ E + SKL S ++ GK+ D+
Sbjct: 123 ---ILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDL 179
Query: 564 NGENSSVIDAAEAGILDLYLTK--MWALKYATSAANTILQQTKAKIAVYTCPVDIATTET 621
V + D L ++ Y + L+ AKI + C ++
Sbjct: 180 G--VIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLE--NAKILLLDCKLE------ 229
Query: 622 KGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGV 681
VV+A D ALHYL K G+M V
Sbjct: 230 -----------------------------------YVVIAEKGIDDEALHYLAKLGIMAV 254
Query: 682 RLNSKFDLRRLCKAVNATALPRL 704
R K DL R+ KA AT + RL
Sbjct: 255 RRVRKEDLERIAKATGATIVSRL 277
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 185 bits (472), Expect = 3e-51
Identities = 80/265 (30%), Positives = 129/265 (48%), Gaps = 54/265 (20%)
Query: 199 FADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMG 258
AD V+T GP G NK+++NH K+ +TND ATI++E+EI+HPAAKL+
Sbjct: 1 LADAVKTTLGPKGRNKMLVNHGGKITITNDGATILKEIEIQHPAAKLL------------ 48
Query: 259 DGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVN 318
V A ++ Q+EE+GDGT ++ AG LL
Sbjct: 49 --------------VEA------------------AKSQDEEVGDGTTTAVVLAGELLEE 76
Query: 319 ADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYG 378
A+ L+ G+ P++I+ GY+LAL L+ L L+ V D + E++ ++++ SK
Sbjct: 77 AEKLIEAGIHPTDIIRGYELALEIALKALEELS-IPVSD--DDEDLLNVARTSLNSKISS 133
Query: 379 NE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDI- 436
E + L L+ A + I F+V N+ + KI G L +SE+++G+V +
Sbjct: 134 RESELLGKLVVDAVLLI----IEKFDVGNIGVIKIEGGSLEDSELIEGIVLDKGYLSPDM 189
Query: 437 -TKQTKAKIAVYTCPVDIATTETKT 460
+ KI + CP++ TE
Sbjct: 190 PKRLENPKILLLDCPLEYEKTEKVI 214
Score = 109 bits (275), Expect = 3e-25
Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 46/181 (25%)
Query: 462 PAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNT 521
ELG A V E+G+ + ++AT+++RGAT++ +D++ERA++D +N
Sbjct: 295 LEPDELGSAGKVEEREIGEDKTTFIE-GCLSGKVATILLRGATDHELDELERAIEDALNA 353
Query: 522 FKGITK------------------------------------------VFVKTLAENTGV 539
K K V +TLAEN G+
Sbjct: 354 VKAALKDEGVVPGGGAAELELSRALREYAKSVSGKEQLGIEAFAEALEVIPRTLAENAGL 413
Query: 540 KSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTI 599
EV++KL +AH +G G D + + D EAGI+D K ALK A A+ I
Sbjct: 414 DPIEVLAKLKAAHKKGN-NLGIDA--DTGEIGDMKEAGIIDPLKVKRSALKSAVEVASLI 470
Query: 600 L 600
L
Sbjct: 471 L 471
Score = 102 bits (257), Expect = 5e-23
Identities = 66/258 (25%), Positives = 105/258 (40%), Gaps = 51/258 (19%)
Query: 476 DELGD--TAVVVFK---LEAAESRIA-----TLVIRG---ATE---NYMDDIERAVDDGV 519
+E+GD T VV LE AE I T +IRG A E ++++ V D
Sbjct: 57 EEVGDGTTTAVVLAGELLEEAEKLIEAGIHPTDIIRGYELALEIALKALEELSIPVSDDD 116
Query: 520 NTFKGITKVFVKTLAENTGVKSNEVISKL-----------YSAHNEG--KKTYGFDINGE 566
+ + + + + +E++ KL + N G K G + E
Sbjct: 117 EDLLNVARTSLNS---KISSRESELLGKLVVDAVLLIIEKFDVGNIGVIKIEGG---SLE 170
Query: 567 NSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVL 626
+S +I+ GI+ Y + L+ KI + CP++ TE
Sbjct: 171 DSELIE----GIV-------LDKGYLSPDMPKRLE--NPKILLLDCPLEYEKTEKVIIST 217
Query: 627 IKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSK 686
+ + + EE QL ++ I D G N+V+ D+ALH+L K G++ +R K
Sbjct: 218 AEELE---RLLEAEEKQLLPLLEKIVDAGVNLVIIQKGIDDLALHFLAKNGILALRRVKK 274
Query: 687 FDLRRLCKAVNATALPRL 704
DL RL KA AT + L
Sbjct: 275 EDLERLAKATGATVVSSL 292
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 165 bits (420), Expect = 9e-44
Identities = 74/279 (26%), Positives = 127/279 (45%), Gaps = 55/279 (19%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
E+A NI A + AD V+T GP G NK++++ + +TND TI++E+E+EHP AKL
Sbjct: 10 EDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKL 69
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ E+ ++ Q++E GDGT
Sbjct: 70 LV--------EV------------------------------------AKKQDDEAGDGT 85
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
++ AGALL A+ L+ G+ P+ I GY+LA+ K +E L + K V + E
Sbjct: 86 TTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIA----KPVSDSEEEL 141
Query: 366 KGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQG 425
K +++ SK +++ + +L+ +A + G ++D + I K G E+V+G
Sbjct: 142 KIAITSVASKSANSDEEIGELVVEAVEKV---GKEQSDLDGIIIVKESGGSETELEVVEG 198
Query: 426 MVFKRSVEG--DITKQ--TKAKIAVYTCPVDIATTETKT 460
MVF + + + KI + ++I E
Sbjct: 199 MVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELPL 237
Score = 86.5 bits (215), Expect = 1e-17
Identities = 62/254 (24%), Positives = 93/254 (36%), Gaps = 36/254 (14%)
Query: 476 DELGD--TAVVVFK---LEAAESRIA-----TLVIRGATENYMDDIERAVDDGVNTFKGI 525
DE GD T VV L+ AE IA T++ RG AV+ V K I
Sbjct: 79 DEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRG--------YRLAVEKAVEELKEI 130
Query: 526 TKVFVKTLAENTGVKSNEVISKLYSAHNEG----------KKTYGFDINGENSSVIDAAE 575
K V E + V SK SA+++ +K + + ++ +
Sbjct: 131 AKP-VSDSEEELKIAITSVASK--SANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKESG 187
Query: 576 AGILDLYLTKMWALK--YATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADEL 633
+L + + Y + + KI + ++I E ++I S L
Sbjct: 188 GSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELPLEIVISSGKPL 247
Query: 634 MKFSRGEE-NQLEEQIKAIADTGANVVVAGAK-FGDMALHYLNKYGLMGVRLNSKFDL-R 690
+ + EE L + I GANVVV A D+A YL ++ R K DL
Sbjct: 248 LIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGE 307
Query: 691 RLCKAVNATALPRL 704
RL K A + L
Sbjct: 308 RLAKLGGAKIVSVL 321
Score = 79.6 bits (197), Expect = 2e-15
Identities = 56/220 (25%), Positives = 81/220 (36%), Gaps = 60/220 (27%)
Query: 427 VFKRSVEGDITKQTKAKIAVYTCPVDIATTETKTPPAASELGY--ADSVAVDELGDTAVV 484
V K + + K AKI ++ + T LG A V + GD +
Sbjct: 300 VKKEDLGERLAKLGGAKI--------VSVLKDLTT---IVLGEGAAGLVEETKTGDYDME 348
Query: 485 VFKL-EAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK---------------- 527
+ +A +AT+++RGATE +D+ ER ++D +N + +
Sbjct: 349 KLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAA 408
Query: 528 ---------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYG 560
+ LAEN G+ EV+SKL SAH YG
Sbjct: 409 LRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHAT--TNYG 466
Query: 561 FDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
D D EAGI+D K ALK A AA +L
Sbjct: 467 IDAFTGEYED-DMIEAGIIDPLKVKRSALKNAAEAAGLLL 505
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
in productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
Archaeal cpn60 (thermosome), together with TF55 from
thermophilic bacteria and the eukaryotic cytosol
chaperonin (CTT), belong to the type II group of
chaperonins. Cpn60 consists of two stacked octameric
rings, which are composed of one or two different
subunits. Their common function is to sequester
nonnative proteins inside their central cavity and
promote folding by using energy derived from ATP
hydrolysis.
Length = 517
Score = 149 bits (378), Expect = 3e-38
Identities = 80/280 (28%), Positives = 138/280 (49%), Gaps = 51/280 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+A NI+A K A+ VRT GP GM+K++++ + + +TND ATI++E++IEHPAAK+
Sbjct: 14 RDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKM 73
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ E+ ++ Q+EE+GDGT
Sbjct: 74 LV--------EV------------------------------------AKTQDEEVGDGT 89
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
++ AG LL A++LL + P+ I+ GY+LA K LE+L + D + + +
Sbjct: 90 TTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIA--IKVDPDDKDTLR 147
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVD--NVRITKILGSGLFNSEI 422
K K+++ K D L DL+ A + + + VD N++I K G + ++E+
Sbjct: 148 KIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTEL 207
Query: 423 VQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
++G+V + V G + AKIA+ P+++ TE
Sbjct: 208 IRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEIDA 247
Score = 84.2 bits (209), Expect = 7e-17
Identities = 39/97 (40%), Positives = 53/97 (54%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ P+++ TE + I S D+L F EE L+E + IADTGANVV
Sbjct: 227 ENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQ 286
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNAT 699
D+A HYL K G++ VR K D+ +L +A A
Sbjct: 287 KGIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAK 323
Score = 80.0 bits (198), Expect = 1e-15
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 47/180 (26%)
Query: 464 ASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFK 523
+LG A+ V ++GD +V F + T+++RG TE+ +D++ERA++D +
Sbjct: 333 PEDLGEAELVEERKVGDDKMV-FVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVA 391
Query: 524 GIT------------------------------------------KVFVKTLAENTGVKS 541
+ +TLAEN G+
Sbjct: 392 DALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDP 451
Query: 542 NEVISKLYSAHNEGKKTYGFDI-NGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
+ + +L +AH +G K G D+ GE V+D E G+++ K A+K AT AA IL
Sbjct: 452 IDTLVELRAAHEKGNKNAGLDVYTGE---VVDMLEKGVIEPLRVKKQAIKSATEAATMIL 508
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs [Protein fate,
Protein folding and stabilization].
Length = 519
Score = 142 bits (360), Expect = 6e-36
Identities = 78/281 (27%), Positives = 137/281 (48%), Gaps = 53/281 (18%)
Query: 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLI 246
+A NI+A K A+ V++ GP GM+K++++ + + +TND ATI++E++IEHPAAK++
Sbjct: 16 DAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKML 75
Query: 247 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTN 306
+ ++ Q+EE+GDGT ++ AG LL A++LL HP
Sbjct: 76 VEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLEQDIHPTV------------------- 116
Query: 307 FVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTK 366
I+ GY+ A K LEI+ + + + + K
Sbjct: 117 -------------------------IIEGYRKAAEKALEIIDEIA--TKISPEDRDLLKK 149
Query: 367 GIKSAIMSKQYGNE--DFLTDLITKACVSIL---PDGSSSFNVDNVRITKILGSGLFNSE 421
++++ SK D L +L+ +A + DG ++DN++I K G + ++E
Sbjct: 150 VAETSLTSKASAEVAKDKLANLVVEAVKQVAELRGDGKYYVDLDNIKIVKKTGGSIDDTE 209
Query: 422 IVQGMVF-KRSVEGDITKQ-TKAKIAVYTCPVDIATTETKT 460
+V+G+V K V + K+ AKIA+ P+++ TE
Sbjct: 210 LVEGIVVDKEVVHPGMPKRVENAKIALLDAPLEVEKTEIDA 250
Score = 77.4 bits (191), Expect = 8e-15
Identities = 66/244 (27%), Positives = 106/244 (43%), Gaps = 23/244 (9%)
Query: 476 DELGD--TAVVVFK---LEAAESRI-----ATLVIRG---ATENYMDDIER-AVDDGVNT 521
+E+GD T VV LE AE + T++I G A E ++ I+ A
Sbjct: 84 EEVGDGTTTAVVLAGELLEKAEDLLEQDIHPTVIIEGYRKAAEKALEIIDEIATKISPED 143
Query: 522 FKGITKVFVKTL-AENTGVKSNEVISKL------YSAHNEGKKTYGFDINGENSSVIDAA 574
+ KV +L ++ + + + ++ L A G Y D+ +N ++
Sbjct: 144 RDLLKKVAETSLTSKASAEVAKDKLANLVVEAVKQVAELRGDGKYYVDL--DNIKIVKKT 201
Query: 575 EAGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELM 634
I D L + + + AKIA+ P+++ TE + I D++
Sbjct: 202 GGSIDDTELVEGIVVDKEVVHPGMPKRVENAKIALLDAPLEVEKTEIDAEIRITDPDQIQ 261
Query: 635 KFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCK 694
KF EE L+E + IAD GANVV+ D+A HYL K G++ VR K D+ +L +
Sbjct: 262 KFLDQEEAMLKEMVDKIADAGANVVICQKGIDDVAQHYLAKAGILAVRRVKKSDIEKLAR 321
Query: 695 AVNA 698
A A
Sbjct: 322 ATGA 325
Score = 77.4 bits (191), Expect = 9e-15
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 45/180 (25%)
Query: 464 ASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFK 523
S+LGYA V ++G+ +V F + T+++RG TE+ +D++ER++ D ++
Sbjct: 336 ESDLGYAGLVEERKVGEDKMV-FVEGCKNPKAVTILLRGGTEHVVDELERSLQDALHVVA 394
Query: 524 ------------------------------------GITK------VFVKTLAENTGVKS 541
I + LAEN G+
Sbjct: 395 SALEDGKVVAGGGAVEIEIALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDP 454
Query: 542 NEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601
+ + +L + H +G K G IN + D E G+++ K A+K AT AA IL+
Sbjct: 455 IDALVELRAKHEKGNKNAG--INVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILR 512
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, delta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 515
Score = 129 bits (327), Expect = 1e-31
Identities = 77/263 (29%), Positives = 134/263 (50%), Gaps = 57/263 (21%)
Query: 192 NISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQ 251
NI A K AD +RT+ GP GM+K++ ++ +TND ATI++++ + HPAAK+++
Sbjct: 13 NIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLV---- 68
Query: 252 MQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIF 311
E+ S+ Q+ E GDGT V++
Sbjct: 69 ----EL------------------------------------SKAQDIEAGDGTTSVVVL 88
Query: 312 AGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTL-TCFEVKDVRN--VENVTKGI 368
AGALL ++LL+ G+ P+ I +++A K +EIL ++ ++ D R +++ T +
Sbjct: 89 AGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLND-RESLIKSATTSL 147
Query: 369 KSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVD--NVRITKILGSGLFNSEIVQGM 426
S ++S QY L + A + ++ D +++ NVD ++RI K LG + ++E+V G+
Sbjct: 148 NSKVVS-QYS--SLLAPIAVDAVLKVI-DPATATNVDLKDIRIVKKLGGTIEDTELVDGL 203
Query: 427 VFKR---SVEGDITKQTKAKIAV 446
VF + G T+ KAKI +
Sbjct: 204 VFTQKASKKAGGPTRIEKAKIGL 226
Score = 51.9 bits (125), Expect = 9e-07
Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 44/176 (25%)
Query: 467 LGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV------- 519
LG AD V LGD +V + T+++RG+ + +D+ ER++ D +
Sbjct: 334 LGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLV 393
Query: 520 ------------------------NTFKGITKVFVK-----------TLAENTGVKSNEV 544
T G+ + V+ TLAEN G+ +
Sbjct: 394 KKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISI 453
Query: 545 ISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
+++L + H +G+K G IN ++ + E ++ L A+ AT IL
Sbjct: 454 VTELRNRHAQGEKNAG--INVRKGAITNILEENVVQPLLVSTSAITLATETVRMIL 507
Score = 41.1 bits (97), Expect = 0.002
Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 604 KAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGA 663
KAKI + + T+ +++ ++ + R E + K I +G NV++
Sbjct: 221 KAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQK 280
Query: 664 KF-----GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNAT 699
D+ALH+L K +M V+ + ++ +CK +
Sbjct: 281 SILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGCK 321
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily. Chaperonins
are involved in productive folding of proteins. They
share a common general morphology, a double toroid of 2
stacked rings, each composed of 7-9 subunits. There are
2 main chaperonin groups. The symmetry of type I is
seven-fold and they are found in eubacteria (GroEL) and
in organelles of eubacterial descent (hsp60 and RBP).
The symmetry of type II is eight- or nine-fold and they
are found in archea (thermosome), thermophilic bacteria
(TF55) and in the eukaryotic cytosol (CTT). Their
common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. This superfamily
also contains related domains from Fab1-like
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases
that only contain the intermediate and apical domains.
Length = 209
Score = 111 bits (281), Expect = 5e-28
Identities = 43/208 (20%), Positives = 87/208 (41%), Gaps = 51/208 (24%)
Query: 362 ENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421
E + + +++ SK +DFL L+ A + + PD ++ +++ KI G L +SE
Sbjct: 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRM-DDLGVIKVEKIPGGSLEDSE 60
Query: 422 IVQGMVFKRSVEGDI--TKQTKAKIAVYTCPVD--------------------------- 452
+V G+VF + + AKI + CP++
Sbjct: 61 LVVGVVFDKGYASPYMPKRLENAKILLLDCPLEYVVIAEKGIDDLALHYLAKAGIMAVRR 120
Query: 453 -----------------IATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRI 495
+++ E TP +LG A+ V ++G+ + + +
Sbjct: 121 VKKEDLERIARATGATIVSSLEDLTP---EDLGTAELVEETKIGEEKLTFIE-GCKGGKA 176
Query: 496 ATLVIRGATENYMDDIERAVDDGVNTFK 523
AT+++RGATE +D+++R++ D + +
Sbjct: 177 ATILLRGATEVELDEVKRSLHDALCAVR 204
Score = 61.3 bits (150), Expect = 1e-10
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 657 NVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
VV+A D+ALHYL K G+M VR K DL R+ +A AT + L
Sbjct: 94 YVVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSL 141
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 117 bits (296), Expect = 7e-28
Identities = 75/263 (28%), Positives = 130/263 (49%), Gaps = 57/263 (21%)
Query: 192 NISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQ 251
NI A K AD +RT+ GP GM+K++ + ++ +TND ATI++++ + HPAAK+++
Sbjct: 14 NIVAAKAVADAIRTSLGPKGMDKMIQDGKGEVIITNDGATILKQMAVLHPAAKMLV---- 69
Query: 252 MQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIF 311
E+ S+ Q+ E GDGT V+I
Sbjct: 70 ----EL------------------------------------SKAQDIEAGDGTTSVVIL 89
Query: 312 AGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSA 371
AGALL + LL G+ P+ I ++ A + ++IL + V D+ + E + K ++
Sbjct: 90 AGALLGACERLLNKGIHPTIISESFQSAADEAIKILDEM-SIPV-DLSDREQLLKSATTS 147
Query: 372 IMSK---QYGNEDFLTDLITKACVSILPDGSSSFNVD--NVRITKILGSGLFNSEIVQGM 426
+ SK QY L L A + ++ D ++ NVD ++++ K LG + ++E+++G+
Sbjct: 148 LSSKVVSQY--SSLLAPLAVDAVLKVI-DPENAKNVDLNDIKVVKKLGGTIDDTELIEGL 204
Query: 427 VFKRSVE---GDITKQTKAKIAV 446
VF + G T+ KAKI +
Sbjct: 205 VFTQKASKSAGGPTRIEKAKIGL 227
Score = 49.8 bits (119), Expect = 4e-06
Identities = 38/180 (21%), Positives = 70/180 (38%), Gaps = 44/180 (24%)
Query: 464 ASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---- 519
A +LG A+ V + ++ + T+V+RG+ + +D+ ER++ D +
Sbjct: 332 ADKLGSAELVEEVDSDGGKIIKITGIQNAGKTVTVVVRGSNKLVIDEAERSLHDALCVIR 391
Query: 520 ---------------------------NTFKGITKVFVK-----------TLAENTGVKS 541
T KG+ V+ TLAEN G+
Sbjct: 392 CLVKKRGLIAGGGAPEIEIARRLSKYARTMKGVESYCVRAFADALEVIPYTLAENAGLNP 451
Query: 542 NEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601
+V+++L + H G+KT G I+ + + E +L L A+ A+ +IL+
Sbjct: 452 IKVVTELRNRHANGEKTAG--ISVRKGGITNMLEEHVLQPLLVTTSAITLASETVRSILK 509
Score = 40.5 bits (95), Expect = 0.003
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 604 KAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVV---- 659
KAKI + + T+ + +++ ++ + + E + +K I TG NV+
Sbjct: 222 KAKIGLIQFQISPPKTDMENQIIVNDYAQMDRVLKEERAYILNIVKKIKKTGCNVLLIQK 281
Query: 660 -VAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNA 698
+ D+ALH+L K +M V+ + ++ +CK +
Sbjct: 282 SILRDAVNDLALHFLAKMKIMVVKDIEREEIEFICKTIGC 321
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
family, epsilon subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 526
Score = 112 bits (281), Expect = 7e-26
Identities = 74/280 (26%), Positives = 132/280 (47%), Gaps = 55/280 (19%)
Query: 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLI 246
EA +I A K A+ +RT+ GP GM+KI+++ ++ VTND ATI+ +++++H AKL+
Sbjct: 23 EAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLL 82
Query: 247 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTN 306
+ E+ S+ Q++E+GDGT
Sbjct: 83 V--------EL------------------------------------SKSQDDEIGDGTT 98
Query: 307 FVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTK 366
V++ AGALL A+ LL G+ P I +GY+ A +E L + N E + +
Sbjct: 99 GVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQ 158
Query: 367 GIKSAIMSK-QYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQG 425
+++ SK ++ A +S+ N + +++ +G L ++++V+G
Sbjct: 159 TAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKG 218
Query: 426 MVFKRSVEGDIT-----KQTK-AKIAVYTCPVDIATTETK 459
+V ++ D + K+ K AKIA+ TCP + +TK
Sbjct: 219 IV----IDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTK 254
Score = 58.5 bits (142), Expect = 8e-09
Identities = 31/99 (31%), Positives = 48/99 (48%)
Query: 605 AKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664
AKIA+ TCP + +TK + I S ++ K E+ E ++ + D GAN+V+
Sbjct: 237 AKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWG 296
Query: 665 FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPR 703
F D A H L + GL VR ++ + A +PR
Sbjct: 297 FDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRIVPR 335
Score = 30.7 bits (70), Expect = 3.3
Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 46/183 (25%)
Query: 463 AASELGYADSVAVDELGDTAVVVFKLE-AAESRIATLVIRGATENYMDDIER-------- 513
+ +LG A V G T + +E S+ T+ IRG + +++ +R
Sbjct: 340 SPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCV 399
Query: 514 -----------------------AVDDGVNTFKGITKVFVK-----------TLAENTGV 539
AV+ + GI + ++ LAEN+G+
Sbjct: 400 VRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGL 459
Query: 540 KSNEVISKLYSAHNEGKKTY-GFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANT 598
E +S++ + + K + G D G ++ D E + + ++K + AT
Sbjct: 460 NPIETLSEVKARQVKEKNPHLGIDCLGRGTN--DMKEQKVFETLISKKQQILLATQVVKM 517
Query: 599 ILQ 601
IL+
Sbjct: 518 ILK 520
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 111 bits (279), Expect = 1e-25
Identities = 72/277 (25%), Positives = 133/277 (48%), Gaps = 49/277 (17%)
Query: 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLI 246
EA NI+A K A +RT+ GP GM+K++I+ + VTND ATI+ ++++++P AKL+
Sbjct: 27 EAKKSNIAAAKSVASILRTSLGPKGMDKMLISPDGDITVTNDGATILSQMDVDNPIAKLM 86
Query: 247 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTN 306
+ ++ S+ Q++E+GDGT
Sbjct: 87 V---EL-----------------------------------------SKSQDDEIGDGTT 102
Query: 307 FVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVK-DVRNVENVT 365
V++ AGALL A+ LL G+ P +I G++ A +E L E+ D N E +
Sbjct: 103 GVVVLAGALLEQAEELLDKGIHPIKIAEGFEEAARVAVEHLEE-ISDEISADNNNREPLI 161
Query: 366 KGIKSAIMSK-QYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQ 424
+ K+++ SK ++ A +++ + D +++ +G L ++++++
Sbjct: 162 QAAKTSLGSKIVSKCHRRFAEIAVDAVLNVADMERRDVDFDLIKVEGKVGGSLEDTKLIK 221
Query: 425 GMVFKRSVEG-DITKQTK-AKIAVYTCPVDIATTETK 459
G++ + + K+ K AKIA+ TCP + +TK
Sbjct: 222 GIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTK 258
Score = 56.4 bits (136), Expect = 3e-08
Identities = 33/99 (33%), Positives = 49/99 (49%)
Query: 605 AKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK 664
AKIA+ TCP + +TK + I S +E K + E+ + +E I I +GAN+V+
Sbjct: 241 AKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFKEMIDDIKKSGANIVICQWG 300
Query: 665 FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPR 703
F D A H L + L VR +L + A +PR
Sbjct: 301 FDDEANHLLLQNDLPAVRWVGGQELELIAIATGGRIVPR 339
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
family, gamma subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 480
Score = 106 bits (268), Expect = 2e-24
Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 51/246 (20%)
Query: 192 NISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQ 251
NI A K AD +RT GP M K++++ + + +TND I+RE+++ HPAAK
Sbjct: 21 NIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAK------- 73
Query: 252 MQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIF 311
MIE S+ Q+EE+GDGT VII
Sbjct: 74 ----------------------------SMIEL---------SRTQDEEVGDGTTSVIIL 96
Query: 312 AGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSA 371
AG +L A+ L G+ P+ I+ Y+ AL L+IL ++ DV + + K IKS
Sbjct: 97 AGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEIS--IPVDVNDRAQMLKIIKSC 154
Query: 372 IMSKQYGNE-DFLTDLITKACVSI-LPDGSSSFNVD---NVRITKILGSGLFNSEIVQGM 426
I +K D + +L A ++ + + +D ++ KI G + +S ++ G+
Sbjct: 155 IGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGV 214
Query: 427 VFKRSV 432
+ + V
Sbjct: 215 MLNKDV 220
Score = 50.4 bits (121), Expect = 2e-06
Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 45/158 (28%)
Query: 486 FKLEAAESRIATLVIRGATENYMDDIERAVDDGVN------------------------- 520
F E + + T+++RGA+++ ++++ER + D +
Sbjct: 317 FITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHA 376
Query: 521 ------TFKGITK-----------VFVKTLAENTGVKSNEVISKLYSAH-NEGKKTYGFD 562
+ +G+ + V +TLA+N G +++L + H T+G
Sbjct: 377 LSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWG-- 434
Query: 563 INGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
I+GE ++D E GI D K K A AA +L
Sbjct: 435 IDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLL 472
Score = 30.7 bits (70), Expect = 3.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 667 DMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPR 703
D+A HYL K G+ +R K D R+ +A AT + R
Sbjct: 253 DLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNR 289
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 106 bits (266), Expect = 6e-24
Identities = 73/276 (26%), Positives = 132/276 (47%), Gaps = 64/276 (23%)
Query: 183 SGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPA 242
SG ++ +N++A A+ V+++ GP G++K++++ I + +TND ATI++ LE+EHPA
Sbjct: 5 SG-QDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA 63
Query: 243 AKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMG 302
AK +LV +Q+Q++E+G
Sbjct: 64 AK--------------------------ILVEL------------------AQLQDKEVG 79
Query: 303 DGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLE-ILPTLTCFEVKDVRNV 361
DGT V+I A LL A+ L++ + P+ I++GY+LA + ++ I L+ +V
Sbjct: 80 DGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSI-------SV 132
Query: 362 ENVTKGI-----KSAIMSKQYGNE-DFLTDLITKACVSIL---PDGSSSFNVDNVRITKI 412
+N+ K K+++ SK G + DF +++ A +++ G + + + V I K
Sbjct: 133 DNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKA 192
Query: 413 LGSGLFNSEIVQGMVFKRSV--EGDITKQTKAKIAV 446
G S +V G + +G T+ AKIA
Sbjct: 193 HGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIAC 228
Score = 71.5 bits (176), Expect = 7e-13
Identities = 66/260 (25%), Positives = 105/260 (40%), Gaps = 75/260 (28%)
Query: 408 RITKILGSG---LFNSEIVQGMVFKRSVEGD--------------ITKQTKAKIAVYTCP 450
RI KIL +G + + + M K VE I K T A +
Sbjct: 266 RIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLVS---- 321
Query: 451 VDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDD 510
+A E + S LG A+ V + +GD +++ K S A++++RGA + +D+
Sbjct: 322 -TLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSS-ASIILRGANDFMLDE 379
Query: 511 IERAVDDGVNTFK------------GITK------------------------------V 528
+ER++ D + K G + V
Sbjct: 380 MERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLV 439
Query: 529 FVKTLAENTGVKSNEVISKLYSAHNEGK--------KTYGFDINGENSSVIDAAEAGILD 580
KTLA N + E+++KL + H + K YG D+ N V D EAG+L+
Sbjct: 440 IPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLI--NGKVRDNLEAGVLE 497
Query: 581 LYLTKMWALKYATSAANTIL 600
++K+ +LK+AT AA TIL
Sbjct: 498 PTVSKIKSLKFATEAAITIL 517
Score = 62.3 bits (152), Expect = 5e-10
Identities = 42/109 (38%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 603 TKAKIAVYTCPVDIATTETK---GT-VLIKSADELMKFSRGEENQLEEQIKAIADTGANV 658
AKIA +D +TK G V++ ++L K + E + +E+IK I GANV
Sbjct: 222 KNAKIAC----LDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANV 277
Query: 659 VVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVST 707
V+ DM L Y + G M VR K DLRR+ KA AT LVST
Sbjct: 278 VLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGAT----LVST 322
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 536
Score = 105 bits (264), Expect = 1e-23
Identities = 68/271 (25%), Positives = 130/271 (47%), Gaps = 61/271 (22%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
++ +N++A A+ V+T+ GP G++K++++ I + +TND ATI++ LE+EHPAAK+
Sbjct: 11 QDVRTQNVTATMAVANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKI 70
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ E+ +Q+Q+ E+GDGT
Sbjct: 71 LV--------EL------------------------------------AQLQDREVGDGT 86
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
V+I A LL A+ L++ + P+ I++GY+LAL + ++ + + +V+ +
Sbjct: 87 TSVVIIAAELLKRANELVKNKVHPTSIISGYRLALKEAVKYI------KENLSVSVDTLG 140
Query: 366 KG-----IKSAIMSKQYGNE-DFLTDLITKACVSIL---PDGSSSFNVDNVRITKILGSG 416
K K+++ SK G + DF ++++ A +++ +G + + V I K G
Sbjct: 141 KEALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKTTNENGEIKYPIKAVNILKAHGKS 200
Query: 417 LFNSEIVQGMVFKRSVEGDITKQ--TKAKIA 445
S +V+G + + KAKIA
Sbjct: 201 ARESYLVKGYALNCTRASQQMPKRIKKAKIA 231
Score = 68.6 bits (168), Expect = 5e-12
Identities = 65/256 (25%), Positives = 107/256 (41%), Gaps = 65/256 (25%)
Query: 408 RITKILGSG---LFNSEIVQGMVFKRSVEGDI--TKQTK-------AKIAVYTCPVDIAT 455
RI KIL +G + + + M K VE ++ K AK T +A
Sbjct: 270 RIKKILDAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTLVSTLAD 329
Query: 456 TETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAV 515
E + AS LG+AD V + + D ++ K S A++++RGA + +D++ER++
Sbjct: 330 LEGEETFDASYLGFADEVVQERIADDECILIKGTKKRS-SASIILRGANDFMLDEMERSL 388
Query: 516 DDGVNTFKGITK------------------------------------------VFVKTL 533
D + K + + KTL
Sbjct: 389 HDALCVVKRTLESNSVVPGGGAVEAALSIYLENFATTLGSREQLAIAEFAEALLIIPKTL 448
Query: 534 AENTGVKSNEVISKLYSAHN--------EGKKTYGFDINGENSSVIDAAEAGILDLYLTK 585
A N S E+++KL + H + K YG D++ N + D EAG+L+ ++K
Sbjct: 449 AVNAAKDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLS--NGKIRDNKEAGVLEPAVSK 506
Query: 586 MWALKYATSAANTILQ 601
+ +LK+AT AA TIL+
Sbjct: 507 VKSLKFATEAAITILR 522
Score = 60.9 bits (148), Expect = 1e-09
Identities = 45/130 (34%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
Query: 582 YLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETK---GT-VLIKSADELMKFS 637
YL K +AL ++ + KAKIA +D + K G +++ +L +
Sbjct: 205 YLVKGYALNCTRASQQMPKRIKKAKIAC----LDFNLQKAKMALGVQIVVDDPAKLEQIR 260
Query: 638 RGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVN 697
+ E + +E+IK I D GANVV+ DM L Y + G MGVR K DL+R+ KA
Sbjct: 261 QREADITKERIKKILDAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATG 320
Query: 698 ATALPRLVST 707
T LVST
Sbjct: 321 GT----LVST 326
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 104 bits (260), Expect = 3e-23
Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 51/246 (20%)
Query: 192 NISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQ 251
NI A K AD +RT GP M K++++ + + +TND I+RE+++ HPAAK
Sbjct: 21 NIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAK------- 73
Query: 252 MQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIF 311
MIE S+ Q+EE+GDGT VII
Sbjct: 74 ----------------------------SMIEL---------SRTQDEEVGDGTTSVIIL 96
Query: 312 AGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSA 371
AG +L A+ L + P+ I+ YK AL L +L ++ DV + + K I+S
Sbjct: 97 AGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISI--PVDVNDDAAMLKLIQSC 154
Query: 372 IMSKQYGN-EDFLTDLITKACVSILPD-GSSSFNVD---NVRITKILGSGLFNSEIVQGM 426
I +K D + DL A ++ D G+ +D ++ KI G + +S +++G+
Sbjct: 155 IGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGV 214
Query: 427 VFKRSV 432
+ + V
Sbjct: 215 MINKDV 220
Score = 44.3 bits (105), Expect = 2e-04
Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 46/170 (27%)
Query: 475 VDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFK----------- 523
V ++GD F E + + T+++RGA+++ +++IER + D + +
Sbjct: 348 VKKIGDE-YFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPG 406
Query: 524 -GITKVFV------------------------------KTLAENTGVKSNEVISKLYSAH 552
G T++ V +TLA+N GV +++L + H
Sbjct: 407 GGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKH 466
Query: 553 -NEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQ 601
EG T+G I+GE ++D E GI + K+ K A +A +L+
Sbjct: 467 AQEGNCTWG--IDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLR 514
Score = 35.5 bits (82), Expect = 0.12
Identities = 24/99 (24%), Positives = 46/99 (46%)
Query: 606 KIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAKF 665
+I + CP++ E++ V I ++ + + EE ++ + I ++V+
Sbjct: 233 RIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGV 292
Query: 666 GDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL K + +R K D R+ +A AT + R
Sbjct: 293 SDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVNRP 331
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 522
Score = 101 bits (253), Expect = 2e-22
Identities = 69/243 (28%), Positives = 116/243 (47%), Gaps = 51/243 (20%)
Query: 191 RNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGS 250
NI+AC+ AD VRT GP GM+K++++ K+ ++ND ATI++ L+I HPAAK
Sbjct: 20 SNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAK------ 73
Query: 251 QMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVII 310
LV+ ++ Q+ E+GDGT V++
Sbjct: 74 --------------------TLVDI------------------AKSQDAEVGDGTTSVVV 95
Query: 311 FAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTC-FEVKDVRNV-ENVTKGI 368
AG L A + G+ P I+ GY+ AL +E + + + +D E + K
Sbjct: 96 LAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCA 155
Query: 369 KSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMV 427
+A+ SK +E +F ++ A +S+ D ++D + I K+ G L +S++V G+
Sbjct: 156 ATALNSKLIASEKEFFAKMVVDAVLSLDDD----LDLDMIGIKKVPGGSLEDSQLVNGVA 211
Query: 428 FKR 430
FK+
Sbjct: 212 FKK 214
Score = 53.8 bits (130), Expect = 2e-07
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 45/151 (29%)
Query: 493 SRIATLVIRGATENYMDDIERAVDDGV-------------------------------NT 521
++ T+++RG E ++++ ER++ D + T
Sbjct: 363 AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRT 422
Query: 522 FKGITKVFVK-----------TLAENTGVKSNEVISKLYSAHNEGKKT-YGFDINGENSS 569
G ++ + L +N G + ++++KL H +G YG DIN E
Sbjct: 423 IAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEG-- 480
Query: 570 VIDAAEAGILDLYLTKMWALKYATSAANTIL 600
+ D EA + + L K+ AL AT AA IL
Sbjct: 481 IADNFEAFVWEPSLVKINALTAATEAACLIL 511
Score = 31.5 bits (72), Expect = 1.7
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 640 EENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNAT 699
E + ++++ I +GANVV++ GD+A Y + + DL+R+ +A +
Sbjct: 266 EWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATGGS 325
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 523
Score = 91.7 bits (228), Expect = 3e-19
Identities = 69/245 (28%), Positives = 111/245 (45%), Gaps = 55/245 (22%)
Query: 192 NISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQ 251
NI+AC A+ ++T GP GM+K+++ K V+ND ATI++ L+I HPAAK
Sbjct: 23 NINACVAIAEALKTTLGPRGMDKLIVGSNGKATVSNDGATILKLLDIVHPAAK------- 75
Query: 252 MQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIF 311
LV+ ++ Q+ E+GDGT V+I
Sbjct: 76 -------------------TLVDI------------------AKSQDSEVGDGTTSVVIL 98
Query: 312 AGALLVNADNLLRMGLTPSEIVNGYK----LALAKTLEILPTLTCFEVKDVRNVENVTKG 367
AG LL A + G+ P I+ GY+ LA+ K EI T+ + E + K
Sbjct: 99 AGELLKEAKPFIEEGVHPQLIIRGYREALSLAIEKIKEIAVTID---SEKGEQRELLEKC 155
Query: 368 IKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGM 426
+A+ SK + +F + +I A +S+ D + + K+ G L +S +V G+
Sbjct: 156 AATALSSKLIAHNKEFFSKMIVDAVLSLDRDDLDL---KLIGVKKVQGGALEDSVLVNGV 212
Query: 427 VFKRS 431
FK++
Sbjct: 213 AFKKT 217
Score = 63.2 bits (154), Expect = 2e-10
Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 44/150 (29%)
Query: 493 SRIATLVIRGATENYMDDIERAVDDGV--------------------------------- 519
++ T+++RG E ++++ ER++ D +
Sbjct: 365 AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKNKKIVAGGGAIEMELSKCLRDYSKT 424
Query: 520 ---------NTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSV 570
N F +V + L EN G S E+++KL SAH +G K YG DIN E+ +
Sbjct: 425 IDGKQQLIINAFAKALEVIPRQLCENAGFDSIEILNKLRSAHAKGGKWYGVDINTED--I 482
Query: 571 IDAAEAGILDLYLTKMWALKYATSAANTIL 600
D E + + L K+ ALK AT AA TIL
Sbjct: 483 GDNFENFVWEPALVKINALKAATEAACTIL 512
Score = 31.3 bits (71), Expect = 2.0
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 640 EENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNAT 699
E + E+++ I ++GAN+V++ GD+A Y + + S D++R+ KA +
Sbjct: 268 EWAIIFEKLRKIVESGANIVLSKLPIGDLATQYFADHNIFCAGRVSAEDMKRVIKACGGS 327
Query: 700 AL 701
Sbjct: 328 IQ 329
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 517
Score = 86.6 bits (215), Expect = 1e-17
Identities = 79/334 (23%), Positives = 140/334 (41%), Gaps = 90/334 (26%)
Query: 200 ADTVRTAYGPNGMNKIVI--NHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEM 257
D V+T GP GM+KI+ + VTND ATI++ + +++PAAK+++ S++Q++E+
Sbjct: 26 GDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQDDEV 85
Query: 258 GDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLV 317
GDGT V + A LL A+ L+ HP
Sbjct: 86 GDGTTSVTVLAAELLREAEKLVAQKIHPQT------------------------------ 115
Query: 318 NADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVK--------DVRNVENVTKGIK 369
I+ GY++A A E L + + + D+ N+ T +
Sbjct: 116 --------------IIEGYRMATAAAREALLS-SAVDHSSDEEAFREDLLNIARTT--LS 158
Query: 370 SAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFK 429
S I+++ +++ +L A + + S N+D ++I K LG L +S + +G +
Sbjct: 159 SKILTQ---DKEHFAELAVDAVLRL----KGSGNLDAIQIIKKLGGSLKDSYLDEGFLLD 211
Query: 430 RSVEGDITKQ-TKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKL 488
+ + + K+ AKI + P+D T + K + V VD A ++
Sbjct: 212 KKIGVNQPKRIENAKILIANTPMD--TDKIKI--------FGAKVRVDSTAKVA----EI 257
Query: 489 EAAESRIATLVIRGATENYMDDIERAVDDGVNTF 522
E AE E + +E+ + G+N F
Sbjct: 258 EEAEK-----------EKMKNKVEKILKHGINCF 280
Score = 62.7 bits (153), Expect = 4e-10
Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 49/192 (25%)
Query: 452 DIATTETKTPPAASELGYADSVAVDELGDTAVVVFK-LEAAESRIATLVIRGATENYMDD 510
+IA+T P +LG + +G+ ++ F + A E+ T+V+RGA++ +D+
Sbjct: 320 EIASTFDH--PELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEA--CTIVLRGASQQILDE 375
Query: 511 IER-------------------------------AVDDGVNTFKGITKV----FVKTL-- 533
ER AV++ G + F K L
Sbjct: 376 AERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQ 435
Query: 534 -----AENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWA 588
A+N G S E++++L +AH G T G D+ +V D E GI + + K
Sbjct: 436 LPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDM--RKGTVGDMKELGITESFKVKRQV 493
Query: 589 LKYATSAANTIL 600
L A+ AA IL
Sbjct: 494 LLSASEAAEMIL 505
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 518
Score = 84.5 bits (209), Expect = 5e-17
Identities = 81/324 (25%), Positives = 141/324 (43%), Gaps = 73/324 (22%)
Query: 201 DTVRTAYGPNGMNKIVI-NHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGD 259
D V++ GP GM+KI+ + + VTND ATI++ + +++PAAK+++ S++Q++E+GD
Sbjct: 28 DLVKSTLGPKGMDKILQSASSNTIMVTNDGATILKSIGLDNPAAKVLVNISKVQDDEVGD 87
Query: 260 GTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNA 319
GT V + A LL A+ L+ HP + II G ++ A
Sbjct: 88 GTTSVTVLAAELLREAEKLINQKIHP--QTIIEGYRL----------------------A 123
Query: 320 DNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN 379
LT S + N + +D+ N+ T + S I+S+ +
Sbjct: 124 TKAALDALTKSAVDNSSDKTKFR-------------EDLINIARTT--LSSKILSQ---H 165
Query: 380 EDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQ 439
+D L A + + S N++ ++I KILG L +S + +G + + + + K+
Sbjct: 166 KDHFAQLAVDAVLRL----KGSTNLEAIQIIKILGGKLSDSFLDEGFILAKKIGVNQPKR 221
Query: 440 T-KAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATL 498
AKI + +D T + K + V VD A +LE AE
Sbjct: 222 IENAKILIANTTMD--TDKVKI--------FGSRVRVDSTAKLA----ELEKAER----- 262
Query: 499 VIRGATENYMDDIERAVDDGVNTF 522
E + +E+ + G+N F
Sbjct: 263 ------EKMKEKVEKILKHGINCF 280
Score = 52.6 bits (126), Expect = 5e-07
Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 47/183 (25%)
Query: 462 PAASELGYADSVAVDELGDTAVVVFK-LEAAESRIATLVIRGATENYMDDIERAVDDGVN 520
P +LG D + +G+ ++ F ++A E+ T+V+RGAT+ +D+ ER++ D +
Sbjct: 328 PELVKLGSCDLIEEIMIGEDKLLKFSGVKAGEA--CTIVLRGATQQILDEAERSLHDALC 385
Query: 521 TFKGITK-----------------------------------VFVKTL-------AENTG 538
K F + L A+N G
Sbjct: 386 VLSQTVKESRTVLGGGCAEMLMSKAVDTEAQNIPGKKALAVEAFARALRQLPTILADNAG 445
Query: 539 VKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANT 598
S+E++++L +AH G T G D+N ++ D + GI++ Y K + A+ AA
Sbjct: 446 FDSSELVAQLRAAHYNGNSTMGLDMN--EGTIADMRQLGIVESYKLKRAVVSSASEAAEV 503
Query: 599 ILQ 601
+L+
Sbjct: 504 LLR 506
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional.
Length = 533
Score = 83.9 bits (208), Expect = 8e-17
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 7/102 (6%)
Query: 200 ADTVRTAYGPNGMNKIVI-----NHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQE 254
AD V+T GP GM+KI+ + VTND ATI++ + +++PAAK+++ S+ Q+
Sbjct: 35 ADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKILVDISKTQD 94
Query: 255 EEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQM 296
EE+GDGT V++ AG LL A+ LL HP + II G +M
Sbjct: 95 EEVGDGTTSVVVLAGELLREAEKLLDQKIHP--QTIIEGWRM 134
Score = 60.0 bits (146), Expect = 3e-09
Identities = 52/185 (28%), Positives = 78/185 (42%), Gaps = 53/185 (28%)
Query: 462 PAASELGYADSVAVDELGDTAVVVF----KLEAAESRIATLVIRGATENYMDDIER---- 513
P +LG+ D + +G+ ++ F K EA T+V+RGA+ + +D+ ER
Sbjct: 340 PEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEAC-----TIVLRGASTHILDEAERSLHD 394
Query: 514 ---------------------------AVDDGVNTFKG----ITKVFVKTL-------AE 535
AV++ +G + F K L A+
Sbjct: 395 ALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIAD 454
Query: 536 NTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSA 595
N G S E++SKL + H +G KT G D+ E +V D E GI + Y K+ L AT A
Sbjct: 455 NGGYDSAELVSKLRAEHYKGNKTAGIDM--EKGTVGDMKELGITESYKVKLSQLCSATEA 512
Query: 596 ANTIL 600
A IL
Sbjct: 513 AEMIL 517
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 63.6 bits (155), Expect = 2e-10
Identities = 53/243 (21%), Positives = 101/243 (41%), Gaps = 51/243 (20%)
Query: 188 AVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLII 247
A+ NI+A + D ++T GP G K++++ + +T D ++ E+
Sbjct: 17 ALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEM----------- 65
Query: 248 LGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNF 307
I+HP A +I + Q+E GDGT
Sbjct: 66 ---------------------------------QIQHPTASMIARAATAQDEITGDGTTS 92
Query: 308 VIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT-- 365
+I G LL A+ + G+ P I G+++A + LE L F+VK V+
Sbjct: 93 TVILIGELLKQAERYILEGVHPRIITEGFEIARKELLEFLDK---FKVKTEDEVDREFLL 149
Query: 366 KGIKSAIMSKQY-GNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQ 424
++++ +K D LT+++ A ++I DG ++ V I ++ ++ +++
Sbjct: 150 NVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDG-EDIDLFMVEIMEMKHKSATDTTLIR 208
Query: 425 GMV 427
G+V
Sbjct: 209 GLV 211
Score = 48.2 bits (115), Expect = 1e-05
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 518 GVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAG 577
GV F V KTLAEN+G + + + KL H+EG + G D+N ID G
Sbjct: 437 GVEAFANALLVIPKTLAENSGFDAQDTLVKLEDEHDEGGEVVGVDLNTGEP--IDPEIKG 494
Query: 578 ILDLYLTKMWALKYATSAANTIL 600
I D Y K ++ AT A+ +L
Sbjct: 495 IWDNYRVKKQLIQSATVIASQLL 517
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, zeta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 484
Score = 61.9 bits (151), Expect = 5e-10
Identities = 47/207 (22%), Positives = 87/207 (42%), Gaps = 50/207 (24%)
Query: 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLI 246
+A+ NISA K D ++T GP G K++++ + +T D ++ E++I+HP A +I
Sbjct: 12 QALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMI 71
Query: 247 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTN 306
A+ Q++ GDGT
Sbjct: 72 ----------------------------------------ARAAT----AQDDITGDGTT 87
Query: 307 FVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTL-TCFEVKDVRNVENVT 365
++ G LL A+ ++ G+ P I G++LA K L+ L + E+ R E +
Sbjct: 88 SNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDR--ELLL 145
Query: 366 KGIKSAIMSKQYGNEDFLTDLITKACV 392
++++ +K + + L D +T+ V
Sbjct: 146 SVARTSLRTKLHAD---LADQLTEIVV 169
Score = 50.3 bits (121), Expect = 2e-06
Identities = 45/179 (25%), Positives = 67/179 (37%), Gaps = 51/179 (28%)
Query: 467 LGYADSVAVDELGD---TAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDG----- 518
LGYA V LG+ T F + T++I+G ++ + I+ A+ DG
Sbjct: 302 LGYAGLVYERTLGEEKYT----FIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVK 357
Query: 519 --------------------------VNTFKGITKVFV-----------KTLAENTGVKS 541
+ KG K+ V KTLAEN+G+
Sbjct: 358 NAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDV 417
Query: 542 NEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
E + KL + EG + G D++ +D GI D Y K L AT A+ +L
Sbjct: 418 QETLVKLQDEYAEGGQVGGVDLDTGEP--MDPESEGIWDNYSVKRQILHSATVIASQLL 474
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase
Fab1. Fab1p is important for vacuole size regulation,
presumably by modulating PtdIns(3,5)P2 effector
activity. In the human homolog p235/PIKfyve deletion of
this domain leads to loss of catalytic activity. However
no exact function this domain has been defined. In
general, chaperonins are involved in productive folding
of proteins.
Length = 261
Score = 44.5 bits (106), Expect = 1e-04
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 380 EDFLTDLITKACVSILPD---GSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSV--EG 434
D L L+ KA ++ PD G V+I KI G +SE+V G+VF ++V +
Sbjct: 20 LDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKR 79
Query: 435 DITKQTKAKIAVYTCPVDIATTETK 459
+K +I + P++ E K
Sbjct: 80 MPSKIKNPRILLLQGPLEYQRVENK 104
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis.
Length = 520
Score = 45.1 bits (108), Expect = 1e-04
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 200 ADTVRTAYGPNGMNKIVINHIDKLF----VTNDAATIIRELEIEHP----AAKLIILGSQ 251
AD V+ GP G N V+ I+K F +T D T+ +E+E+E P A+L+ +
Sbjct: 21 ADAVKVTLGPKGRN--VV--IEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVAS 76
Query: 252 MQEEEMGDGTNFVIIFAGALL----------VNADNLLRMIEHPAAKLI 290
+ GDGT + A A++ N +L R IE ++
Sbjct: 77 KTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVV 125
Score = 40.9 bits (97), Expect = 0.002
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 530 VKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTK--MW 587
++ +AEN GV + V+ K+ E +G+D +D EAGI+D TK
Sbjct: 448 LRQIAENAGVDGSVVVEKVL----ESPDGFGYD--AATGEYVDMIEAGIID--PTKVVRS 499
Query: 588 ALKYATSAANTIL 600
AL+ A S A+ +L
Sbjct: 500 ALQNAASVASLLL 512
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 44.8 bits (107), Expect = 1e-04
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 18/83 (21%)
Query: 200 ADTVRTAYGPNGMNKIVINHIDKLF----VTNDAATIIRELEIEHPAAKLIILGSQMQEE 255
AD V+ GP G N + IDK F +T D +I +E+E+E P LG+Q+ +E
Sbjct: 23 ADAVKVTLGPKGRNVV----IDKSFGAPTITKDGVSIAKEIELEDPFEN---LGAQLVKE 75
Query: 256 -------EMGDGTNFVIIFAGAL 271
GDGT + A AL
Sbjct: 76 VASKTNDVAGDGTTTATVLAQAL 98
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed.
Length = 541
Score = 43.2 bits (102), Expect = 5e-04
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 18/84 (21%)
Query: 200 ADTVRTAYGPNGMNKIVINHIDKLF----VTNDAATIIRELEIEHPAAKLIILGSQMQEE 255
AD V+ GP G N + IDK F +TND TI +E+E+E +G+QM E
Sbjct: 24 ADAVKVTLGPKGRNVV----IDKSFGAPTITNDGVTIAKEIELEDKFEN---MGAQMVRE 76
Query: 256 E-------MGDGTNFVIIFAGALL 272
GDGT + A A++
Sbjct: 77 VASKTNDVAGDGTTTATVLAQAIV 100
Score = 34.3 bits (79), Expect = 0.25
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 508 MDDIERAVDD---GVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDIN 564
+D +E A D GV + + V+ +AEN G + + V+ KL E YGF N
Sbjct: 426 LDKLETANGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLR----EKPGGYGF--N 479
Query: 565 GENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIA 608
+ D G++D AL+ A S A +L T+A +A
Sbjct: 480 AATNEYGDLYAQGVIDPVKVVRTALQNAASVA-GLLLTTEAMVA 522
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL. This family consists of GroEL,
the larger subunit of the GroEL/GroES cytosolic
chaperonin. It is found in bacteria, organelles derived
from bacteria, and occasionally in the Archaea. The
bacterial GroEL/GroES group I chaperonin is replaced a
group II chaperonin, usually called the thermosome in
the Archaeota and CCT (chaperone-containing TCP) in the
Eukaryota. GroEL, thermosome subunits, and CCT subunits
all fall under the scope of pfam00118 [Protein fate,
Protein folding and stabilization].
Length = 524
Score = 42.3 bits (100), Expect = 8e-04
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 200 ADTVRTAYGPNGMNKIVINHIDKLF----VTNDAATIIRELEIEHP----AAKLIILGSQ 251
AD V+ GP G N + ++K F +T D T+ +E+E+E A+L+ +
Sbjct: 22 ADAVKVTLGPKGRNVV----LEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVAS 77
Query: 252 MQEEEMGDGTNFVIIFAGAL 271
+ GDGT + A A+
Sbjct: 78 KTNDVAGDGTTTATVLAQAI 97
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 42.4 bits (100), Expect = 8e-04
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 18/84 (21%)
Query: 200 ADTVRTAYGPNGMNKIVINHIDKLF----VTNDAATIIRELEIEHPAAKLIILGSQMQEE 255
A+ V+ GP G N + ++K F +T D T+ +E+E+E +G+QM +E
Sbjct: 24 ANAVKVTLGPKGRNVV----LEKSFGAPRITKDGVTVAKEIELEDKFEN---MGAQMVKE 76
Query: 256 -------EMGDGTNFVIIFAGALL 272
GDGT + A A++
Sbjct: 77 VASKTNDLAGDGTTTATVLAQAIV 100
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional.
Length = 600
Score = 40.7 bits (95), Expect = 0.003
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 181 HFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEH 240
HF+ A+ + + AD V GP G N ++ + + ND T+ +E+E+E
Sbjct: 60 HFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELED 119
Query: 241 P----AAKLIILGSQMQEEEMGDGTNFVIIFAGALLV----------NADNLLRMIEHPA 286
P AKL+ + + GDGT ++ A L+ N + R IE A
Sbjct: 120 PVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTA 179
Query: 287 AKLI----ILGSQMQEEEMGD 303
L+ + ++++ E+ D
Sbjct: 180 KALVKELKKMSKEVEDSELAD 200
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional.
Length = 555
Score = 38.7 bits (91), Expect = 0.009
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 503 ATENYMDDIERAVDDGVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFD 562
+N + +R GV + ++ K +AEN GV+ V+ K+ + ++G+D
Sbjct: 442 EEDNELTPDQRT---GVKIVRNALRLPTKQIAENAGVEGAVVVEKIL---EKKDPSFGYD 495
Query: 563 INGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
++ EAGI+D AL A S A+ +L
Sbjct: 496 AQ--TGEYVNMFEAGIIDPTKVVRSALVDAASVASLML 531
Score = 33.3 bits (77), Expect = 0.48
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLF----VTNDAATIIRELEIEHP 241
+EA + + AD V GP G N VI I++ + +T D T+ + +E
Sbjct: 21 DEARQSLLKGIERLADAVAVTLGPKGRN--VI--IEQEYGSPKITKDGVTVAKAIEFSDR 76
Query: 242 A----AKLIILGSQMQEEEMGDGTNFVIIFAGAL 271
A+LI + ++ GDGT I A A+
Sbjct: 77 FENVGAQLIRQVASKTNDKAGDGTTTATILARAI 110
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 37.0 bits (87), Expect = 0.032
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 18/73 (24%)
Query: 200 ADTVRTAYGPNGMNKIVINHIDKLF----VTNDAATIIRELEIEHPAAKLIILGSQMQEE 255
AD V+ GP G N V+ ++K F +T D T+ +E+E+E P +G+Q+ +E
Sbjct: 23 ADAVKVTLGPKGRN--VV--LEKSFGAPTITKDGVTVAKEIELEDPFEN---MGAQLVKE 75
Query: 256 -------EMGDGT 261
GDGT
Sbjct: 76 VASKTNDVAGDGT 88
Score = 32.8 bits (76), Expect = 0.66
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 530 VKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKM--W 587
++ +AEN G++ + V+ K+ + +G YG+ N +D EAGI+D TK+
Sbjct: 450 LRQIAENAGLEGSVVVEKVKNGKGKG---YGY--NAATGEYVDMIEAGIID--PTKVTRS 502
Query: 588 ALKYATSAANTILQQTKAKIA 608
AL+ A S A +L T+A +A
Sbjct: 503 ALQNAASVAGLLL-TTEAVVA 522
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed.
Length = 545
Score = 36.0 bits (83), Expect = 0.076
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 515 VDDGVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAA 574
V G+N + ++ +AEN GV+ + V+ K+ +E T+GFD + +D
Sbjct: 436 VQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSE---TFGFD--AQTEEYVDMV 490
Query: 575 EAGILDLYLTKMWALKYATSAANTILQQTKAKIA 608
GI+D AL+ A S A +L T+A +A
Sbjct: 491 AKGIIDPAKVVRTALQDAASVAG-LLVTTEAMVA 523
Score = 35.2 bits (81), Expect = 0.15
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 20/105 (19%)
Query: 179 DKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLF----VTNDAATIIR 234
D FSG +A R + A+ V+ GP G N + I+K F +T D T+ +
Sbjct: 5 DVKFSG--DARDRMLRGVDILANAVKVTLGPKGRNVV----IEKSFGAPRITKDGVTVAK 58
Query: 235 ELEIEHPAAKLIILGSQMQEE-------EMGDGTNFVIIFAGALL 272
E+E+E K +G+QM E GDGT + A A++
Sbjct: 59 EIELED---KFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIV 100
>gnl|CDD|218250 pfam04760, IF2_N, Translation initiation factor IF-2, N-terminal
region. This conserved feature at the N-terminus of
bacterial translation initiation factor IF2 has recently
had its structure solved. It shows structural similarity
to the tRNA anticodon Stem Contact Fold domains of the
methionyl-tRNA and glutaminyl-tRNA synthetases, and a
similar fold is also found in the B5 domain of the
phenylalanine-tRNA synthetase.
Length = 52
Score = 30.9 bits (71), Expect = 0.20
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 10/54 (18%)
Query: 530 VKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYL 583
V LA+ GV S E+I KL+ G +S +D A +L
Sbjct: 6 VYELAKELGVSSKELIKKLFKL--------GIMKTH--NSTLDEETAELLAEEF 49
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional.
Length = 546
Score = 34.2 bits (78), Expect = 0.30
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 199 FADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEE--- 255
A+ V+ GP G N ++ +T D T+ +E+E+E K +G+QM E
Sbjct: 23 LANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELED---KFENMGAQMVREVAS 79
Query: 256 ----EMGDGTNFVIIFAGALL 272
GDGT + A A++
Sbjct: 80 KSADAAGDGTTTATVLAQAIV 100
>gnl|CDD|220709 pfam10350, DUF2428, Putative death-receptor fusion protein
(DUF2428). This is a family of proteins conserved from
plants to humans. The function is not known. Several
members have been annotated as being HEAT
repeat-containing proteins while others are designated
as death-receptor interacting proteins, but neither of
these could be confirmed.
Length = 241
Score = 33.0 bits (76), Expect = 0.47
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 133 ATVPYTGITLLKVVREIRRRGAFRTVYPTIPSPRRTTLPAAIFQYYDKHFSGL 185
V G + + EI+ RGAF +VYP T L +++ D L
Sbjct: 81 DQVEAIGYLFFEQLLEIKHRGAFSSVYPGF-----TALCQRLWRSRDPELPAL 128
>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3. The
M-Ras/R-Ras-like subfamily contains R-Ras2/TC21,
M-Ras/R-Ras3, and related members of the Ras family.
M-Ras is expressed in lympho-hematopoetic cells. It
interacts with some of the known Ras effectors, but
appears to also have its own effectors. Expression of
mutated M-Ras leads to transformation of several types
of cell lines, including hematopoietic cells, mammary
epithelial cells, and fibroblasts. Overexpression of
M-Ras is observed in carcinomas from breast, uterus,
thyroid, stomach, colon, kidney, lung, and rectum. In
addition, expression of a constitutively active M-Ras
mutant in murine bone marrow induces a malignant mast
cell leukemia that is distinct from the monocytic
leukemia induced by H-Ras. TC21, along with H-Ras, has
been shown to regulate the branching morphogenesis of
ureteric bud cell branching in mice. Most Ras proteins
contain a lipid modification site at the C-terminus,
with a typical sequence motif CaaX, where a = an
aliphatic amino acid and X = any amino acid. Lipid
binding is essential for membrane attachment, a key
feature of most Ras proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 164
Score = 32.0 bits (73), Expect = 0.63
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 211 GMNKIVINHIDKLFVTNDAATI----IRELEIEHPAAKLIILG-------SQMQEEEMGD 259
G + + I I FVT+ TI ++ EI+ A+L IL S M+E+ M
Sbjct: 14 GKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQEEFSAMREQYMRT 73
Query: 260 GTNFVIIFA 268
G F+++F+
Sbjct: 74 GEGFLLVFS 82
>gnl|CDD|217083 pfam02521, HP_OMP_2, Putative outer membrane protein. This family
consists of putative outer membrane proteins from
Helicobacter pylori (campylobacter pylori).
Length = 454
Score = 32.8 bits (75), Expect = 0.67
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 83 FLCNLCGNEYKFRNFIIGRATSNDTIGTNRTRIACS--LYPTDSYVTCAGMM 132
F +L +YK GR S +G N ++I +YPT+S+VT G +
Sbjct: 14 FSSSLQAFDYKVS----GRVESFSKVGFNNSKINPKKGIYPTESFVTLTGKL 61
>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional.
Length = 334
Score = 31.2 bits (71), Expect = 1.8
Identities = 32/138 (23%), Positives = 44/138 (31%), Gaps = 28/138 (20%)
Query: 576 AGILDLYLTKMWALKY--------------ATSAANTILQQTKAKIAVYTCPVDIATTET 621
A I + +LT LK S T Q K T I TT +
Sbjct: 119 AAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAAT----IITTSS 174
Query: 622 KGTV-LIKS-ADELMKFSRGEENQLEEQIKAIADTGANVVV--AGAKFGDMALHYLNK-- 675
+ V K A ++ EE + K + G N+V+ G + L
Sbjct: 175 EEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVGGSYLSETAEVLAVDG 234
Query: 676 ----YGLMGVRLNSKFDL 689
YG MG KF+L
Sbjct: 235 KWIVYGFMGGAKVEKFNL 252
>gnl|CDD|237630 PRK14161, PRK14161, heat shock protein GrpE; Provisional.
Length = 178
Score = 29.9 bits (67), Expect = 2.8
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 213 NKIVINHIDKLFVTNDAATIIR-ELEIEHPAAKLIILGSQMQ------EEEMGDGTNFVI 265
N+ IN I + V I + EIE KLI +++ E+ + ++ I
Sbjct: 9 NEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAI 68
Query: 266 -IFAGALLVNADNLLRMIEHPAAKL------IILGSQMQEEEM 301
FA LL +DNL R + H A II G QM ++E+
Sbjct: 69 ATFAKELLNVSDNLSRALAHKPANSDVEVTNIIAGVQMTKDEL 111
>gnl|CDD|225230 COG2355, COG2355, Zn-dependent dipeptidase, microsomal dipeptidase
homolog [Amino acid transport and metabolism].
Length = 313
Score = 30.4 bits (69), Expect = 3.8
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 15/62 (24%)
Query: 642 NQLEEQIKAIADTGANV-VVAGAKF-----------GDMA---LHYLNKYGLMGVRLNSK 686
N +EQ+KAIA+TG + V F D+ H++ G+ V L S
Sbjct: 202 NLSDEQLKAIAETGGVIGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGSD 261
Query: 687 FD 688
FD
Sbjct: 262 FD 263
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex together
with SecB and SecD on the surface of Salmonella. All
these proteins are secreted by the type III secretion
system. Many mucosal pathogens use type III secretion
systems for the injection of effector proteins into
target cells. SecB, SseC and SecD are inserted into the
target cell membrane. where they form a small pore or
translocon. In addition to SseC, this family includes
the bacterial secreted proteins PopB, PepB, YopB and
EspD which are thought to be directly involved in pore
formation, and type III secretion system translocon.
Length = 303
Score = 29.7 bits (67), Expect = 5.3
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 4/99 (4%)
Query: 588 ALKYATSAANTILQQTKAKIAVYTCPVDIATTETKGTVLIKSADELM---KFSRGEENQL 644
A A ++ V V T VL K A +L R E QL
Sbjct: 202 AASAAGKLTAKAVEMAVQAADVVAG-VAQGGTGAAVAVLQKEAGKLEADLALLRAEMEQL 260
Query: 645 EEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRL 683
+ IK + + + + + + G ++
Sbjct: 261 QAVIKQLKEEFKKLQEQFQQAMKSISQAIQQSGDTLAQI 299
>gnl|CDD|222266 pfam13616, Rotamase_3, PPIC-type PPIASE domain. Rotamases increase
the rate of protein folding by catalyzing the
interconversion of cis-proline and trans-proline.
Length = 114
Score = 28.0 bits (63), Expect = 6.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 638 RGEENQLEEQIKAIADTGANVVVAGAKFGDMA 669
Q + + KA+AD+ N + GA F +A
Sbjct: 24 AYAGAQRKAEAKALADSIYNALKGGADFAALA 55
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed.
Length = 290
Score = 29.6 bits (66), Expect = 6.3
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 302 GDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDV 358
G +NF +I G L + N L + + I+ Y L+LAKTL I F V+DV
Sbjct: 184 GSHSNFFLIKNGTLYTHPANHLIL----NGIIRQYVLSLAKTLRIPVQEELFSVRDV 236
>gnl|CDD|180169 PRK05625, PRK05625, 5-amino-6-(5-phosphoribosylamino)uracil
reductase; Validated.
Length = 217
Score = 29.1 bits (66), Expect = 6.3
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 645 EEQIKAIADTGANVVVAGAKFGDM--ALHYLNKYG---LM---GVRLN 684
E+++ + GA V+VAG + D+ L L + G LM G L
Sbjct: 106 SEKVEELEKKGAEVIVAGGERVDLPDLLEDLYERGIKRLMVEGGGTLI 153
>gnl|CDD|177430 PHA02605, 54, baseplate subunit; Provisional.
Length = 305
Score = 29.4 bits (66), Expect = 7.0
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 12/77 (15%)
Query: 147 REIRRRGAFRTVYPTIPSPRRTTLPAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTA 206
++ +R F V+ T PS + L G +Y N+ DF +
Sbjct: 14 KDFQRSNLFSVVFATTPSSKSQAL-----------IDGFGGFLYNNLPLNNDFFGLTQGD 62
Query: 207 YGPNGMNKIVINHIDKL 223
G+ +V L
Sbjct: 63 IS-QGLTTLVTAGTQSL 78
>gnl|CDD|217629 pfam03591, AzlC, AzlC protein.
Length = 143
Score = 27.9 bits (63), Expect = 9.8
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 23/65 (35%)
Query: 264 VIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLL 323
+++FAGA A+ + +G + G + I LVN +LL
Sbjct: 33 LLVFAGA----------------AQFVAVGL------LAAGAPLLAIALTTFLVNLRHLL 70
Query: 324 RMGLT 328
+
Sbjct: 71 -YSAS 74
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.385
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 37,686,562
Number of extensions: 3753742
Number of successful extensions: 3623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3556
Number of HSP's successfully gapped: 151
Length of query: 745
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 641
Effective length of database: 6,324,786
Effective search space: 4054187826
Effective search space used: 4054187826
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.0 bits)