RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16434
(745 letters)
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 302 bits (777), Expect = 1e-94
Identities = 151/281 (53%), Positives = 190/281 (67%), Gaps = 45/281 (16%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
KHFSGLEEAVYRNI ACK+ A T RTAYGPNGMNK+VINH++KLFVTNDAATI+RELE++
Sbjct: 4 KHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQ 63
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPAAK+I+ M S MQE+
Sbjct: 64 HPAAKMIV---------------------------------MA-----------SHMQEQ 79
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
E+GDGTNFV++FAGALL A+ LLR+GL+ SE++ GY++A K EILP L C K++R
Sbjct: 80 EVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLR 139
Query: 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN 419
+V+ V+ + +++MSKQYGNE FL LI +ACVSI PD S FNVDN+R+ KILGSG+ +
Sbjct: 140 DVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFPD-SGHFNVDNIRVCKILGSGVHS 198
Query: 420 SEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETKT 460
S ++ GMVFK+ EGD+T AKIAVY+CP D TETK
Sbjct: 199 SSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKG 239
Score = 153 bits (390), Expect = 4e-40
Identities = 85/220 (38%), Positives = 112/220 (50%), Gaps = 56/220 (25%)
Query: 426 MVFKRSVEGD---ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTA 482
M+ + + + D + K A + E+G+ DSV + E+GDT
Sbjct: 295 MLVRLNSKWDLRRLCKTVGATA--------LPRLNPPVL---EEMGHCDSVYLSEVGDTQ 343
Query: 483 VVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK--------------- 527
VVVFK E + I+T+V+RG+T+N MDDIERAVDDGVNTFK +T+
Sbjct: 344 VVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIEL 403
Query: 528 ---------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKKTYG 560
+ LAEN+GVK+NEVISKLY+ H EG K G
Sbjct: 404 AKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVG 463
Query: 561 FDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
DI E +V D EAG+LD YL K WA+K AT+AA T+L
Sbjct: 464 LDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVL 503
Score = 152 bits (387), Expect = 1e-39
Identities = 75/102 (73%), Positives = 84/102 (82%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIAVY+CP D TETKGTVLIKSA+ELM FS+GEEN ++ Q+KAIADTGANVVV G
Sbjct: 219 KDAKIAVYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTG 278
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
+ DMALHY NKY +M VRLNSK+DLRRLCK V ATALPRL
Sbjct: 279 GRVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRL 320
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h*
Length = 568
Score = 295 bits (758), Expect = 3e-91
Identities = 102/289 (35%), Positives = 159/289 (55%), Gaps = 52/289 (17%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
+S + + ++I+A ++ T+ GP G NKI++NH+ K+ +TNDAAT++REL+I
Sbjct: 19 NSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIV 78
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
HPA K+++ M ++ Q+
Sbjct: 79 HPAVKVLV---------------------------------MA-----------TEQQKI 94
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
+MGDGTN V+I AG LL ++ L+ MGL+ EI+ GY +A TL+ L + E+ D
Sbjct: 95 DMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKN 154
Query: 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILP-----DGSSSFNVDNVRITKILG 414
+ + K IK I SK+YG+ED L++L+++A +LP FNVD++R+ KI+G
Sbjct: 155 DKNELLKMIKPVISSKKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMG 214
Query: 415 SGLFNSEIVQGMVFKRSVEGDI---TKQTKAKIAVYTCPVDIATTETKT 460
L NS +++GMVF R EG + ++ K K+AV+TCP+DIA TETK
Sbjct: 215 GSLSNSTVIKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTETKG 263
Score = 155 bits (395), Expect = 2e-40
Identities = 58/102 (56%), Positives = 80/102 (78%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
K K+AV+TCP+DIA TETKGTVL+ +A E++ FS+GEE Q++ +K IAD G +VAG
Sbjct: 243 KKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAG 302
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
A G++ALHYLN+YG++ +++ SKF+LRRLC+ AT LPRL
Sbjct: 303 AGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRL 344
Score = 140 bits (354), Expect = 4e-35
Identities = 70/232 (30%), Positives = 98/232 (42%), Gaps = 68/232 (29%)
Query: 426 MVFKRSVEGD---ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTA 482
+V K + + + + A + TP ELG ++V E+G
Sbjct: 319 LVLKVPSKFELRRLCRVCGATP--------LPRLGAPTP---EELGLVETVKTMEIGGDR 367
Query: 483 VVVFKLE-AAESRIATLVIRGATENYMDDIERAVDDGVNTFKGITK-------------- 527
V VFK E SR +T+++RGAT+N +DDIERA+DDGV KG+ K
Sbjct: 368 VTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATE 427
Query: 528 ------------------------------VFVKTLAENTGVKSNEVISKLYSAHNEGKK 557
V +TLAE G+ NEV+ LY+AHN +
Sbjct: 428 IELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEP 487
Query: 558 T--------YGFDINGE-NSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G DI+GE + V D E I D+ TK +A+ AT AA T+L
Sbjct: 488 GAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVL 539
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 172 bits (438), Expect = 2e-46
Identities = 69/278 (24%), Positives = 135/278 (48%), Gaps = 47/278 (16%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
EA+ +I A K A+T++T+ GPNG++K++++ + VTND ATI+ ++++H AKL
Sbjct: 9 LEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKL 68
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ E+ S+ Q++E+GDGT
Sbjct: 69 MV--------EL------------------------------------SKSQDDEIGDGT 84
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
V++ AGALL A+ LL G+ P I +GY+ A +E L ++ + D++N E +
Sbjct: 85 TGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLI 144
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQ 424
+ K+ + SK + + ++ A +++ + + +++ +G L ++++++
Sbjct: 145 QTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIK 204
Query: 425 GMVFK--RSVEGDITKQTKAKIAVYTCPVDIATTETKT 460
G++ S + AKIA+ TCP + +TK
Sbjct: 205 GVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKH 242
Score = 93.7 bits (234), Expect = 3e-20
Identities = 31/102 (30%), Positives = 49/102 (48%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ TCP + +TK + + S ++ + E+ + EE I+ I +TGAN+ V
Sbjct: 222 EDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQ 281
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
F D A H L + L VR ++ + A +PR
Sbjct: 282 WGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRF 323
Score = 78.7 bits (195), Expect = 2e-15
Identities = 34/224 (15%), Positives = 71/224 (31%), Gaps = 64/224 (28%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELG-- 479
+ V G I T +I + T +LG+A V G
Sbjct: 298 PAVRW-VGGPEIELIAIATGGRI--------VPRFSELTA---EKLGFAGLVKEISFGTT 345
Query: 480 DTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV-------------------- 519
++V + + SR T+ IRG + +++ +R++ D +
Sbjct: 346 KDKMLVIE-QCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAE 404
Query: 520 -----------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAH-NEGK 556
+ + + + LAEN+G+ + ++++ + E
Sbjct: 405 ISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVN 464
Query: 557 KTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G I+ + D +++ + K + AT IL
Sbjct: 465 PALG--IDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMIL 506
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 172 bits (438), Expect = 2e-46
Identities = 72/278 (25%), Positives = 136/278 (48%), Gaps = 49/278 (17%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+ + NISA K AD +RT+ GP GM+K++ + + +TND ATI++++++ HPAA++
Sbjct: 10 AQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARM 69
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ E+ S+ Q+ E GDGT
Sbjct: 70 LV--------EL------------------------------------SKAQDIEAGDGT 85
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
V+I AG+LL + LL+ G+ P+ I ++ AL K +EIL ++ V ++ + E +
Sbjct: 86 TSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMS-RPV-ELSDRETLL 143
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKACVSIL-PDGSSSFNVDNVRITKILGSGLFNSEIV 423
+++ SK L+ + A + ++ P ++S ++ +++I K LG + + E+V
Sbjct: 144 NSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELV 203
Query: 424 QGMVF-KRSVEGDITKQTKAKIAVYTCPVDIATTETKT 460
+G+V ++ IT+ KAKI + + T+
Sbjct: 204 EGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDMDN 241
Score = 94.5 bits (236), Expect = 2e-20
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 601 QQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVV- 659
+ KAKI + + T+ +++ ++ + R E + +K I TG NV+
Sbjct: 219 RVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLL 278
Query: 660 ----VAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
+ D+ALH+LNK +M V+ + D+ +CK + + +
Sbjct: 279 IQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHV 327
Score = 86.0 bits (214), Expect = 8e-18
Identities = 46/222 (20%), Positives = 80/222 (36%), Gaps = 61/222 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVA-VDELGD 480
MV K +E + I K K +A + T LG A+ V G
Sbjct: 302 MVVKD-IEREDIEFICKTIGTKP--------VAHVDQFTA---DMLGSAELAEEVSLNGS 349
Query: 481 TAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV--------------------- 519
++ A+ + T+V+RG+ + +++ ER++ D +
Sbjct: 350 GKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEI 409
Query: 520 ----------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKKT 558
T G+ + TLAEN G+ +++L + H +G+KT
Sbjct: 410 ELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKT 469
Query: 559 YGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G IN + + E ++ L + AL AT +IL
Sbjct: 470 TG--INVRKGGISNILEELVVQPLLVSVSALTLATETVRSIL 509
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 171 bits (436), Expect = 4e-46
Identities = 66/294 (22%), Positives = 133/294 (45%), Gaps = 51/294 (17%)
Query: 171 PAAIFQYYDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAA 230
+ +E NI A + AD +RT+ GP GM+K++ ++ ++ND
Sbjct: 4 KVPSNATFKNKEKP-QEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGH 62
Query: 231 TIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLI 290
TI++++ I HP A++++ E+
Sbjct: 63 TILKQMAILHPVARMLV--------EV--------------------------------- 81
Query: 291 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTL 350
S Q+ E GDGT V+I GALL A+ LL G+ P+ I + ++ A ++++IL +
Sbjct: 82 ---SAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEM 138
Query: 351 TCFEVKDVRNVENVTKGIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRI 409
+V + + E + + +++ SK FL L + + I + S + +++++R+
Sbjct: 139 C-HKV-SLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRL 196
Query: 410 TKILGSGLFNSEIVQGMVFKRSV---EGDITKQTKAKIAVYTCPVDIATTETKT 460
K +G + ++E++ G+V ++ G T++ KAKI + + +T+
Sbjct: 197 VKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDTEN 250
Score = 91.1 bits (227), Expect = 3e-19
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVV--- 659
KAKI + + +T+ +++ ++ K + E L K I NV+
Sbjct: 230 EKAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQ 289
Query: 660 --VAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
+ D+ALH+L+K +M V+ + ++ L K + + +
Sbjct: 290 KSILRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADI 336
Score = 88.7 bits (221), Expect = 1e-18
Identities = 48/223 (21%), Positives = 76/223 (34%), Gaps = 62/223 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
MV K +E + ++K K IA E T L AD V + +
Sbjct: 311 MVVKD-IEREEIEFLSKGLGCKP--------IADIELFTE---DRLDSADLVEEIDSDGS 358
Query: 482 AVVVFK--LEAAESRIATLVIRGATENYMDDIERAVDDGV-------------------- 519
+V ++VIRGA +D+ ER++ D +
Sbjct: 359 KIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPE 418
Query: 520 -----------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKK 557
+ +G+ TLAEN G+ S +V+++L S H G+
Sbjct: 419 IEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGEL 478
Query: 558 TYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G I+ S + E IL L A+ A+ +IL
Sbjct: 479 NDG--ISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSIL 519
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 170 bits (432), Expect = 2e-45
Identities = 76/280 (27%), Positives = 132/280 (47%), Gaps = 53/280 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+ A NI A K AD VRT GP GM+K++++ I + ++ND ATI++E+++EHP AK+
Sbjct: 21 KNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKM 80
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
I+ E+ S+ Q+ +GDGT
Sbjct: 81 IV--------EV------------------------------------SKAQDTAVGDGT 96
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
++ +G LL A+ LL G+ P+ I NGY+LA+ + +I+ + + + +
Sbjct: 97 TTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIA----EKSTDDATLR 152
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKA--CVSILPDGSSSFNVDNVRITKILGSGLFNSEI 422
K +A+ K G DFL DL+ KA V+ + DG + + N+++ K G + +++
Sbjct: 153 KIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQF 212
Query: 423 VQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
+ G+V + AKIA+ ++I TE +
Sbjct: 213 ISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEA 252
Score = 95.3 bits (238), Expect = 1e-20
Identities = 34/102 (33%), Positives = 51/102 (50%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ ++I TE + V I ++ F E N ++ ++ I +GANVV+
Sbjct: 232 KNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQ 291
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL K G+ VR K D+ +L KA A + L
Sbjct: 292 KGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDL 333
Score = 91.4 bits (228), Expect = 2e-19
Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 61/221 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
+R V+ + K T AKI + + TP S LG A++V ++GD
Sbjct: 308 YAVRR-VKKSDMEKLAKATGAKI--------VTDLDDLTP---SVLGEAETVEERKIGDD 355
Query: 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---------------------- 519
+ + +++IRG T++ + ++ERA++D +
Sbjct: 356 RMTFVM-GCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAE 414
Query: 520 ---------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKKTY 559
N+ G ++ + +TLAEN G+ + KL + +G+ +
Sbjct: 415 LAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISV 474
Query: 560 GFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G ++ +N+ V D G++D K AL+ A A IL
Sbjct: 475 G--VDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMIL 513
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 169 bits (430), Expect = 4e-45
Identities = 82/278 (29%), Positives = 138/278 (49%), Gaps = 50/278 (17%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+A NI A + A+TVR+ GP GM+K++++ + + VTND TI+RE+ +EHPAAK+
Sbjct: 18 RDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKM 77
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
+I E+ ++ QE+E+GDGT
Sbjct: 78 LI--------EV------------------------------------AKTQEKEVGDGT 93
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
++ AG LL A+ LL + P+ +V GY+ A K E+L T+ EV ++ E +T
Sbjct: 94 TTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIA-CEV-GAQDKEILT 151
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQ 424
K ++I K + L ++I +A VS + D + D ++I K G+ + ++E+++
Sbjct: 152 KIAMTSITGKGAEKAKEKLAEIIVEA-VSAVVDDEGKVDKDLIKIEKKSGASIDDTELIK 210
Query: 425 GMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
G++ + K T AKIA+ C ++I TET
Sbjct: 211 GVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDA 248
Score = 94.6 bits (236), Expect = 2e-20
Identities = 36/102 (35%), Positives = 54/102 (52%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
T AKIA+ C ++I TET + I +LM+F EE L++ + I +GANV+
Sbjct: 228 TDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQ 287
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL K G++ R K D+ +L KA A + +
Sbjct: 288 KGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAI 329
Score = 86.1 bits (214), Expect = 9e-18
Identities = 48/222 (21%), Positives = 88/222 (39%), Gaps = 62/222 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
+ +R V+ + K T A + IA + +LG A V ++
Sbjct: 304 VAARR-VKKSDMEKLAKATGANV--------IAAIAALSA---QDLGDAGLVEERKISGD 351
Query: 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---------------------- 519
+++ + E + T++IRG TE+ ++++ RAVDD V
Sbjct: 352 SMIFVE-ECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVE 410
Query: 520 ---------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAH-NEGKKT 558
G ++ V +TLAEN G+ + E++ K+ +AH + G K
Sbjct: 411 LSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKC 470
Query: 559 YGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G +N +V D E G+++ K A++ A + +L
Sbjct: 471 AG--LNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLL 510
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 168 bits (428), Expect = 6e-45
Identities = 66/280 (23%), Positives = 132/280 (47%), Gaps = 51/280 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
++A+ NI A +++VR++ GP GM+K++++ + + +TND TI++E+++EHPAAK+
Sbjct: 20 KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKM 79
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ E+ S+ Q+ +GDGT
Sbjct: 80 MV--------EV------------------------------------SKTQDSFVGDGT 95
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
+I AG LL A L+ + P+ I GY++A + ++ ++ ++ +
Sbjct: 96 TTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEIS-TKI-GADEKALLL 153
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKA--CVSILPDGSSSFNVDNVRITKILGSGLFNSEI 422
K ++++ SK D L ++ +A V+ L DG + DN+++ K G + ++++
Sbjct: 154 KMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQL 213
Query: 423 VQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
+ G++ + G AKIA+ P++I E T
Sbjct: 214 INGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDT 253
Score = 94.1 bits (235), Expect = 3e-20
Identities = 36/102 (35%), Positives = 52/102 (50%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ P++I E + I+ + KF EEN L E + I GANVV+
Sbjct: 233 KDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQ 292
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
DMA HYL++ G+ VR K D+ +L KA A+ + +
Sbjct: 293 KGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTI 334
Score = 90.7 bits (226), Expect = 4e-19
Identities = 46/220 (20%), Positives = 88/220 (40%), Gaps = 59/220 (26%)
Query: 426 MVFKRSVEGD---ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTA 482
+R + D + K T A I ++T + + S+LG A+ V ++G+
Sbjct: 309 YAVRRVKKSDMDKLAKATGASI--------VSTIDEISS---SDLGTAERVEQVKVGEDY 357
Query: 483 VVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV----------------------- 519
+ + ++++RG TE+ +D++ER++ D +
Sbjct: 358 MTFVT-GCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEI 416
Query: 520 --------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKKTYG 560
G ++ + + LAEN G+ +++ KL + H +G KTYG
Sbjct: 417 AFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYG 476
Query: 561 FDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
IN + D + G+++ A++ AT AA IL
Sbjct: 477 --INVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMIL 514
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 168 bits (428), Expect = 6e-45
Identities = 70/280 (25%), Positives = 137/280 (48%), Gaps = 51/280 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+EAV NI+A K + +++ YGP GM+K++++ + + +TND ATI+ +++++HPAAKL
Sbjct: 29 KEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKL 88
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ ++ ++ Q+EE DGT
Sbjct: 89 LV--------QI------------------------------------AKGQDEETADGT 104
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
+IF+G L+ A++LL + P+ I++GYK A L+ + L V + + + +
Sbjct: 105 KTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELA-QTV-SINDTDLLR 162
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKA--CVSILPDGSSSFNVDNVRITKILGSGLFNSEI 422
K +++ SK +++ D++ KA V+ L ++DN++I K G + ++++
Sbjct: 163 KIAMTSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQL 222
Query: 423 VQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
V G+V + V G + AKIA+ +++ E
Sbjct: 223 VYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDA 262
Score = 94.5 bits (236), Expect = 2e-20
Identities = 30/102 (29%), Positives = 51/102 (50%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ +++ E + I ++ KF EEN ++E++ I TGANV++
Sbjct: 242 ENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQ 301
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
++A YL K G++ VR K DL +L +A + +
Sbjct: 302 KGIDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNI 343
Score = 86.1 bits (214), Expect = 1e-17
Identities = 46/222 (20%), Positives = 85/222 (38%), Gaps = 62/222 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
+ +R + + + T ++ ++ + + +LGYA + ++G+
Sbjct: 318 LAVRR-AKKSDLEKLARATGGRV--------VSNIDEISE---QDLGYASLIEERKVGED 365
Query: 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---------------------- 519
+V + A + +++IRG E +D+ ERA+ D +
Sbjct: 366 KMVFVE-GAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIE 424
Query: 520 ---------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAH-NEGKKT 558
G ++ V L EN G +++ KL S H NE K
Sbjct: 425 IAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKW 484
Query: 559 YGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
YG I+ +D + G+++ L KM A+K AT AA +L
Sbjct: 485 YG--IDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVL 524
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 167 bits (426), Expect = 9e-45
Identities = 66/281 (23%), Positives = 123/281 (43%), Gaps = 51/281 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
E +N+ A A+ V+++ GP G++K++++ I + +TND ATI++ LE+EHPAAK+
Sbjct: 9 EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 68
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
+ E+ + +Q++E+GDGT
Sbjct: 69 LC--------EL------------------------------------ADLQDKEVGDGT 84
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
V+I A LL NAD L++ + P+ +++GY+LA + + + D + +
Sbjct: 85 TSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINT-DELGRDCLI 143
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKACVSI---LPDGSSSFNVDNVRITKILGSGLFNSE 421
K+++ SK G DF +L+ A ++I G + V+++ + K G S
Sbjct: 144 NAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESM 203
Query: 422 IVQGMVFK--RSVEGDITKQTKAKIAVYTCPVDIATTETKT 460
++ G +G + AKIA + +
Sbjct: 204 LINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGV 244
Score = 93.0 bits (232), Expect = 6e-20
Identities = 34/102 (33%), Positives = 50/102 (49%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA + + V+I ++L + + E + +E+I+ I TGANV++
Sbjct: 224 VNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTT 283
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
DM L Y + G M VR K DL+R+ KA AT L L
Sbjct: 284 GGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTL 325
Score = 81.1 bits (201), Expect = 3e-16
Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 69/232 (29%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTP---PAASELGYADSVAVDEL 478
M +R V I K + A + ++T AS LG A+ V + +
Sbjct: 300 MAVRR-VLKRDLKRIAKASGATV--------LSTLANLEGEETFEASMLGQAEEVVQERI 350
Query: 479 GDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV------------------- 519
D +++ K A++++RGA + D++ER++ D +
Sbjct: 351 CDDELILIK-NTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAV 409
Query: 520 ------------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGK 556
+ ++ + TLA N S ++++KL + HNE +
Sbjct: 410 EAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQ 469
Query: 557 --------KTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
K G ++ N D +AG+ + + K+ +LK+AT AA TIL
Sbjct: 470 VNPERKNLKWIG--LDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITIL 519
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 165 bits (420), Expect = 7e-44
Identities = 81/280 (28%), Positives = 132/280 (47%), Gaps = 51/280 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+A NI A + A+TVRT GP GM+K++++ + + VTND ATI+ +++++HPAAK+
Sbjct: 22 RDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKM 81
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ E+ ++ Q++E GDGT
Sbjct: 82 MV--------EV------------------------------------AKTQDKEAGDGT 97
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
++ AG LL A+ LL + PS I GY LA K EIL + V D + E +
Sbjct: 98 TTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIA-IRV-DPDDEETLL 155
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKA--CVSILPDGSSSFNVDNVRITKILGSGLFNSEI 422
K ++I K + + L L +A V+ DG ++DN++ K G G+ SE+
Sbjct: 156 KIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESEL 215
Query: 423 VQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
V+G+V + V + AKIA+ +++ TET
Sbjct: 216 VRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDA 255
Score = 96.9 bits (242), Expect = 4e-21
Identities = 41/102 (40%), Positives = 56/102 (54%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ +++ TET + I S D+LM F EE L++ + IA TGANVV
Sbjct: 235 ENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQ 294
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL KYG+M VR K D+ +L KA A + +
Sbjct: 295 KGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNV 336
Score = 93.8 bits (234), Expect = 3e-20
Identities = 54/221 (24%), Positives = 86/221 (38%), Gaps = 61/221 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
M +R V+ + K T AKI + + TP +LGYA+ V +L
Sbjct: 311 MAVRR-VKKSDMEKLAKATGAKI--------VTNVKDLTP---EDLGYAEVVEERKLAGE 358
Query: 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---------------------- 519
++ + + T++IRG TE+ +D++ERA++D V
Sbjct: 359 NMIFVE-GCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIE 417
Query: 520 ---------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKKTY 559
G + + KTLAEN G+ + E++ K+ S H
Sbjct: 418 LAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGI 477
Query: 560 GFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G I+ D E GI++ K A+K A+ AA IL
Sbjct: 478 G--IDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMIL 516
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 165 bits (421), Expect = 8e-44
Identities = 59/286 (20%), Positives = 125/286 (43%), Gaps = 55/286 (19%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
EA +I A + A ++T+ GP G++KI+I+ ++ +TND ATI+ ++E+++ AKL
Sbjct: 44 LEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKL 103
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ ++ S+ Q++E+GDGT
Sbjct: 104 LV--------QL------------------------------------SKSQDDEIGDGT 119
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTC-FEVKD-VRNVEN 363
V++ A ALL A L++ G+ P +I NG+ A + L + +
Sbjct: 120 TGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDF 179
Query: 364 VTKGIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEI 422
+ + K+++ SK + D ++ +A ++++ + D +++ +G + +S++
Sbjct: 180 LLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKL 239
Query: 423 VQGMVFKRSV--------EGDITKQTKAKIAVYTCPVDIATTETKT 460
+ G++ + K+A+ TCP + +TK
Sbjct: 240 INGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKPKTKH 285
Score = 93.0 bits (232), Expect = 7e-20
Identities = 30/101 (29%), Positives = 48/101 (47%)
Query: 604 KAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGA 663
K+A+ TCP + +TK + I S +E K E+++ +E I + GA+VV+
Sbjct: 266 GVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQW 325
Query: 664 KFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
F D A H L + L VR +L + + N +PR
Sbjct: 326 GFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRF 366
Score = 79.2 bits (196), Expect = 2e-15
Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 64/224 (28%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELG-- 479
+ V G I T +I + + + +LG + E G
Sbjct: 341 PAVRW-VGGQELEHIAISTNGRI--------VPRFQDLSK---DKLGTCSRIYEQEFGTT 388
Query: 480 DTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV-------------------- 519
+++ + ++ E++ T +RG+ + +D+ ERA+ D +
Sbjct: 389 KDRMLIIE-QSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAE 447
Query: 520 -----------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGK- 556
+ +GI + TLAEN+G+ +S L S + K
Sbjct: 448 VTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKI 507
Query: 557 KTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G ++ D E ++D ++ K + AT IL
Sbjct: 508 SNIG--VDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMIL 549
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 164 bits (418), Expect = 2e-43
Identities = 63/283 (22%), Positives = 120/283 (42%), Gaps = 53/283 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
++ +N+ A A+ V+++ GP G++K++++ I VTND ATI+ L+++HPA K+
Sbjct: 23 DDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKI 82
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ E+ +Q Q+ E+GDGT
Sbjct: 83 LV--------EL------------------------------------AQQQDREIGDGT 98
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
V+I A LL A+ L++ + P+ I+ G+++AL + + + + V D E +
Sbjct: 99 TSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSV-DTLGKETLI 157
Query: 366 KGIKSAIMSKQYGNE-DFLTDLITKACVSIL---PDGSSSFNVDNVRITKILGSGLFNSE 421
K+++ SK G + DF ++++ A +++ G + V V + K G S
Sbjct: 158 NIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESL 217
Query: 422 IVQGMVFK--RSVEG--DITKQTKAKIAVYTCPVDIATTETKT 460
+V G + + KIA + A
Sbjct: 218 LVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKARMAMGV 260
Score = 92.7 bits (231), Expect = 8e-20
Identities = 29/105 (27%), Positives = 47/105 (44%)
Query: 600 LQQTKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVV 659
+ KIA + A + I ++L + + E + E++K I D GA VV
Sbjct: 237 IAGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVV 296
Query: 660 VAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
+ D+ L + +MGVR K DLRR+ +A AT + +
Sbjct: 297 LTTKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSM 341
Score = 79.9 bits (198), Expect = 9e-16
Identities = 44/236 (18%), Positives = 89/236 (37%), Gaps = 73/236 (30%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTP---PAASELGYADSVAVDEL 478
M +R + + I + T A + +++ +S LG D V +
Sbjct: 316 MGVRR-CKKEDLRRIARATGATL--------VSSMSNLEGEETFESSYLGLCDEVVQAKF 366
Query: 479 GDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV------------------- 519
D ++ K ++ +++++RGA + +D++ER++ D +
Sbjct: 367 SDDECILIK-GTSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCV 425
Query: 520 ------------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGK 556
T ++ + KTLA N S+E+++KL S H +
Sbjct: 426 EAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQ 485
Query: 557 ------------KTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
+ YG ++ ++D AG+L+ ++K+ +LK A A IL
Sbjct: 486 MAKPEDVKRRSYRNYG--LDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAIL 539
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 164 bits (417), Expect = 2e-43
Identities = 60/282 (21%), Positives = 114/282 (40%), Gaps = 54/282 (19%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+ + NI+AC + ++ GP G + +++ K ++ND ATI++ L++ HPAAK
Sbjct: 23 KGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKT 82
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ ++ S+ Q+ E+GDGT
Sbjct: 83 LV--------DI------------------------------------SRAQDAEVGDGT 98
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTL-TCFEVKDVRNVENV 364
V I AG L+ A L G++ I+ GY+ A++ +E + L + E +
Sbjct: 99 TSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEKSSGRELL 158
Query: 365 TKGIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIV 423
+ ++A+ SK N DF + A +S+ + + + I KI G + S +
Sbjct: 159 ERCARTAMSSKLIHNNADFFVKMCVDAVLSL---DRNDLDDKLIGIKKIPGGAMEESLFI 215
Query: 424 QGMVFKRSVEGDITKQ-----TKAKIAVYTCPVDIATTETKT 460
G+ FK++ +Q KI +++ +
Sbjct: 216 NGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKDNA 257
Score = 93.0 bits (232), Expect = 6e-20
Identities = 18/102 (17%), Positives = 42/102 (41%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
KI +++ + V ++ ++ E + E+++ + +TGAN+V++
Sbjct: 237 NNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSK 296
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
GD+A + + S D+ R+ +AV +
Sbjct: 297 LPIGDLATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTT 338
Score = 90.7 bits (226), Expect = 4e-19
Identities = 46/221 (20%), Positives = 81/221 (36%), Gaps = 61/221 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
R V D + + I +TT P LG ++G
Sbjct: 313 FCAGR-VSADDMNRVIQAVGGSI--------QSTTSDIKP---EHLGTCALFEEMQIGSE 360
Query: 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---------------------- 519
+F+ +++ TL++RG E + ++ER++ D +
Sbjct: 361 RYNLFQ-GCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEME 419
Query: 520 ---------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKKTY 559
T G ++ + + L EN G + E+++KL AH++G+K Y
Sbjct: 420 VSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEKWY 479
Query: 560 GFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G + E ++ D + + L K+ AL AT A N IL
Sbjct: 480 G--VVFETENIGDNFAKFVWEPALVKINALNSATEATNLIL 518
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 163 bits (416), Expect = 3e-43
Identities = 48/277 (17%), Positives = 111/277 (40%), Gaps = 47/277 (16%)
Query: 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLI 246
A+ N+++ + + T GP G K++++ + +T D ++ E++I+ P A LI
Sbjct: 17 AALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLI 76
Query: 247 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTN 306
+ Q+E GDGT
Sbjct: 77 A--------RA------------------------------------AAAQDEITGDGTT 92
Query: 307 FVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTK 366
V+ G LL A ++ G+ P I +G+++A ++++ L + + E + +
Sbjct: 93 TVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQ 152
Query: 367 GIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQG 425
+S++++K + + LT ++T A +S+ + + ++ V I ++ ++ ++G
Sbjct: 153 VARSSLLTKVDADLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSPKDTTFIKG 212
Query: 426 MVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
+V T+ A + + ++ TE +
Sbjct: 213 LVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNS 249
Score = 83.8 bits (208), Expect = 6e-17
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 10/112 (8%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIAD--------- 653
A + + ++ TE SAD+ K + E ++ ++K I D
Sbjct: 229 KNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMD 288
Query: 654 -TGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
V++ M+L K+ ++ +R + ++ RL A +
Sbjct: 289 PDKGFVIINQKGIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSV 340
Score = 83.0 bits (206), Expect = 1e-16
Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 53/187 (28%)
Query: 464 ASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDG----- 518
LG++ V + +G+ E + + T++I+G+T + + AV DG
Sbjct: 345 PQILGFSGLVYQETIGEEKFTYVT-ENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVA 403
Query: 519 -----------------------------VNTFKGITKVFV-----------KTLAENTG 538
KG TK + KTL +N+G
Sbjct: 404 NVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSG 463
Query: 539 VKSNEVISKLYSAHN-----EGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYAT 593
+V++ + + + + G ++ D GI D Y A+ AT
Sbjct: 464 FDPLDVLAMVEDELDDAQDSDETRYVG--VDLNIGDSCDPTIEGIWDSYRVLRNAITGAT 521
Query: 594 SAANTIL 600
A+ +L
Sbjct: 522 GIASNLL 528
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 162 bits (413), Expect = 4e-43
Identities = 65/280 (23%), Positives = 123/280 (43%), Gaps = 52/280 (18%)
Query: 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLI 246
+ NI+A K AD +RT GP M K++++ + + +TND I+RE++++HPAAK +
Sbjct: 9 KVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSM 68
Query: 247 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTN 306
I E+ S+ Q+EE+GDGT
Sbjct: 69 I--------EI------------------------------------SRTQDEEVGDGTT 84
Query: 307 FVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTK 366
VII AG +L A++ L + P+ +++ Y+ AL + L ++ V D N + +
Sbjct: 85 SVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKIS-IPV-DTSNRDTMLN 142
Query: 367 GIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVD---NVRITKILGSGLFNSEI 422
I S+I +K ++ A ++ + + +D R+ KI G + +S +
Sbjct: 143 IINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCV 202
Query: 423 VQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
++G++ + V +I + ++ E++T
Sbjct: 203 LRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQT 242
Score = 96.4 bits (241), Expect = 5e-21
Identities = 20/102 (19%), Positives = 44/102 (43%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
+I + ++ E++ + I ++ + + EE +++ + I +VV+
Sbjct: 222 KNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITE 281
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL + + +R K D R+ +A A + R
Sbjct: 282 KGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRP 323
Score = 81.4 bits (202), Expect = 3e-16
Identities = 38/223 (17%), Positives = 80/223 (35%), Gaps = 63/223 (28%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVA-VDELGD 480
+R V I + A+I ++ E ++G + + ++GD
Sbjct: 298 TAIRR-VRKTDNNRIARACGARI--------VSRPEELRE---EDVGTGAGLLEIKKIGD 345
Query: 481 TAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV--------------------- 519
E + + T+++RGA++ + ++ER + D +
Sbjct: 346 EYFTFIT-ECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEM 404
Query: 520 ----------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGK-K 557
G+ + +TL +N G + +++ L + H + +
Sbjct: 405 AVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCE 464
Query: 558 TYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
T+G +NGE +++D E GI + K+ K A A +L
Sbjct: 465 TWG--VNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLL 505
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 158 bits (403), Expect = 9e-42
Identities = 61/283 (21%), Positives = 115/283 (40%), Gaps = 56/283 (19%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+ NISAC+ A+ VRT GP GM+K++++ K ++ND ATI++ L++ HPAAK
Sbjct: 10 IPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKT 69
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
++ ++ ++ Q+ E+GDGT
Sbjct: 70 LV--------DI------------------------------------AKSQDAEVGDGT 85
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTC-FEVKD-VRNVEN 363
V + A L + GL P I+ ++ A + + + + +D V +
Sbjct: 86 TSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKL 145
Query: 364 VTKGIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEI 422
+ K +A+ SK + F ++ A + + + + I K+ G L S++
Sbjct: 146 LEKCAMTALSSKLISQQKAFFAKMVVDAVMML----DDLLQLKMIGIKKVQGGALEESQL 201
Query: 423 VQGMVFKRSV-----EGDITKQTKAKIAVYTCPVDIATTETKT 460
V G+ FK++ E K IA+ +++ +
Sbjct: 202 VAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNA 244
Score = 92.2 bits (230), Expect = 1e-19
Identities = 18/102 (17%), Positives = 41/102 (40%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
IA+ +++ + + + + ++ E N L ++++ I +GA VV++
Sbjct: 224 HNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSK 283
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
GD+A Y + + DL+R A + +
Sbjct: 284 LPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSV 325
Score = 89.1 bits (222), Expect = 1e-18
Identities = 35/221 (15%), Positives = 73/221 (33%), Gaps = 61/221 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
R V + I + + LG ++G
Sbjct: 300 FCAGR-VPEEDLKRTMMACGGSI--------QTSVNALSS---DVLGRCQVFEETQIGGE 347
Query: 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---------------------- 519
F +++ T+++RG E +M++ ER++ D +
Sbjct: 348 RYNFFT-GCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEME 406
Query: 520 ---------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKKTY 559
T G ++ + + L +N G + +++KL + H +G Y
Sbjct: 407 LSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWY 466
Query: 560 GFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G ++ + D EA + + + ++ AL A+ AA I+
Sbjct: 467 G--VDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIV 505
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 158 bits (401), Expect = 2e-41
Identities = 64/279 (22%), Positives = 115/279 (41%), Gaps = 53/279 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHI-DKLFVTNDAATIIRELEIEHPAAK 244
E A D V++ GP GM+K++ + + VTND ATI++ + +++PAAK
Sbjct: 16 ENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAK 75
Query: 245 LIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDG 304
+++ + S++Q++E+GDG
Sbjct: 76 VLV--------NI------------------------------------SKVQDDEVGDG 91
Query: 305 TNFVIIFAGALLVNADNLLRMGLT-PSEIVNGYKLALAKTLEILPTL-TCFEVKDVRNVE 362
T V + + LL A+ L+ P I+ GY+LA A L+ L E
Sbjct: 92 TTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFRE 151
Query: 363 NVTKGIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421
++ K+ + SK + D +L T A + + S N+++++I KILG L +S
Sbjct: 152 DLIHIAKTTLSSKILSQDKDHFAELATNAILRL----KGSTNLEHIQIIKILGGKLSDSF 207
Query: 422 IVQGMVF-KRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
+ +G + K+ + AKI + +D +
Sbjct: 208 LDEGFILAKKFGNNQPKRIENAKILIANTTLDTDKVKIF 246
Score = 92.6 bits (231), Expect = 9e-20
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 1/103 (0%)
Query: 603 TKAKIAVYTCPVDIATTETKGT-VLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVA 661
AKI + +D + GT + S +L + + E +++ +I I+ G N +
Sbjct: 227 ENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFIN 286
Query: 662 GAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D G+ + + RL +
Sbjct: 287 RQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTGGEVVSTF 329
Score = 89.5 bits (223), Expect = 7e-19
Identities = 43/221 (19%), Positives = 81/221 (36%), Gaps = 61/221 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
+ + + + T ++ ++T + + +LG D + LG+
Sbjct: 304 NSIEH-ADFEGVERLALVTGGEV--------VSTFDEPSK---CKLGECDVIEEIMLGEQ 351
Query: 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---------------------- 519
+ F T+V+RGAT+ +D+ ER++ D +
Sbjct: 352 PFLKFS-GCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMV 410
Query: 520 ---------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKKTY 559
G + V LA+N G S+E++SKL S+ G T
Sbjct: 411 MSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTS 470
Query: 560 GFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G ++ N ++ D + GI++ Y K + A+ AA +L
Sbjct: 471 G--LDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLL 509
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 157 bits (399), Expect = 3e-41
Identities = 61/278 (21%), Positives = 116/278 (41%), Gaps = 53/278 (19%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHI--DKLFVTNDAATIIRELEIEHPAA 243
E A + D V++ GP GM+KI+++ L VTND ATI++ + +++PAA
Sbjct: 9 ETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAA 68
Query: 244 KLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGD 303
K+++ +M S++Q++E+GD
Sbjct: 69 KVLV--------DM------------------------------------SRVQDDEVGD 84
Query: 304 GTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTC-FEVKDVRNVE 362
GT V + A LL A++L+ + P I+ G++ A + L +V+ +
Sbjct: 85 GTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQ 144
Query: 363 NVTKGIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421
++ + + SK + D T L +A + + S N++ + + K LG L +S
Sbjct: 145 DLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVIKKLGGSLADSY 200
Query: 422 IVQGMVF-KRSVEGDITKQTKAKIAVYTCPVDIATTET 458
+ +G + K+ + AKI + +D +
Sbjct: 201 LDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKI 238
Score = 90.3 bits (225), Expect = 4e-19
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 1/103 (0%)
Query: 603 TKAKIAVYTCPVDIATTETKGT-VLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVA 661
AKI + +D + G+ V + S ++ + E+ +++E+++ I G N +
Sbjct: 220 ENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFIN 279
Query: 662 GAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
+ G+M + + RL
Sbjct: 280 RQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIASTF 322
Score = 88.7 bits (221), Expect = 2e-18
Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 61/221 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
M + + + T +I +T + +LG + +G+
Sbjct: 297 MAIEH-ADFVGVERLALVTGGEI--------ASTFDHPEL---VKLGSCKLIEEVMIGED 344
Query: 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---------------------- 519
++ F A T+V+RGAT+ +D+ ER++ D +
Sbjct: 345 KLIHFS-GVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEML 403
Query: 520 ---------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKKTY 559
+ G V + +A+N G S +++++L +AH+EGK T
Sbjct: 404 MAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTA 463
Query: 560 GFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G ++ + ++ D + GI + + K L A AA IL
Sbjct: 464 G--LDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVIL 502
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 156 bits (398), Expect = 4e-41
Identities = 54/277 (19%), Positives = 107/277 (38%), Gaps = 51/277 (18%)
Query: 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLI 246
A+ NISA + D +RT GP G K++++ + +T D ++ E++I+HP A LI
Sbjct: 10 AALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLI 69
Query: 247 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTN 306
++ + Q++ GDGT
Sbjct: 70 A--------KV------------------------------------ATAQDDITGDGTT 85
Query: 307 FVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTK 366
++ G LL AD + GL P I G++ A K L+ L + V + E +
Sbjct: 86 SNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVK---VSKEMDRETLID 142
Query: 367 GIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQG 425
++++ +K + D LT+ + + + + ++ V I ++ ++ +++G
Sbjct: 143 VARTSLRTKVHAELADVLTEAVVDS-ILAIKKQDEPIDLFMVEIMEMKHKSETDTSLIRG 201
Query: 426 MVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
+V + A I ++ TE +
Sbjct: 202 LVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNS 238
Score = 91.4 bits (228), Expect = 2e-19
Identities = 40/179 (22%), Positives = 64/179 (35%), Gaps = 45/179 (25%)
Query: 464 ASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---- 519
L V LG+ + + R TL+I+G ++ + I+ A+ DG+
Sbjct: 333 PDCLLGHAGVYEYTLGEEKFTFIE-KCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVK 391
Query: 520 ---------------------------NTFKGITKVFV-----------KTLAENTGVKS 541
+ KG ++ V K LA+N+G
Sbjct: 392 NAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDL 451
Query: 542 NEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
E + K+ + H+E + G ++ + AAEAGI D Y K L T A IL
Sbjct: 452 QETLVKVQAEHSESGQLVG--VDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNIL 508
Score = 87.6 bits (218), Expect = 3e-18
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
A I ++ TE KSA+E K + E +E+++K I + V
Sbjct: 218 EDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDS 277
Query: 663 AK---------FGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
K +L L K G++ +R + ++ RL A AL L
Sbjct: 278 DKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSL 328
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 155 bits (393), Expect = 4e-40
Identities = 71/286 (24%), Positives = 124/286 (43%), Gaps = 57/286 (19%)
Query: 187 EAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLI 246
+A NI+A K AD +RT GP M K++++ + L +TND I+RE+++ HPAAK +
Sbjct: 19 QAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSM 78
Query: 247 ILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTN 306
+ S+ Q+EE+GDGT VII AG +L
Sbjct: 79 LELSRTQDEEVGDGTTTVIILAGEILAQC------------------------------- 107
Query: 307 FVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTK 366
A L+ + P I+ K AL LE++ + V DV N + K
Sbjct: 108 ------------APYLIEKNIHPVIIIQALKKALTDALEVIKQV-SKPV-DVENDAAMKK 153
Query: 367 GIKSAIMSKQYGNE-DFLTDLITKACVSILPDGSSSFNV---------DNVRITKILGSG 416
I+++I +K + + + +L A ++ D + VR+ KI G
Sbjct: 154 LIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGD 213
Query: 417 LFNSEIVQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
+ +S +++G++ + V ++ + CP++ E++T
Sbjct: 214 VLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGESQT 259
Score = 94.0 bits (234), Expect = 4e-20
Identities = 23/102 (22%), Positives = 47/102 (46%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
++ + CP++ E++ + I+ ++ + + EE Q++ + I +V+
Sbjct: 239 ENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITE 298
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL K G +R K D R+ + AT + R+
Sbjct: 299 KGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRV 340
Score = 63.2 bits (154), Expect = 2e-10
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 531 KTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALK 590
+TL +N G ++S+L + H +G T G I+G+ ++D GI + + K ++K
Sbjct: 510 RTLIQNAGGDPIRLLSQLRAKHAQGNFTTG--IDGDKGKIVDMVSYGIWEPEVIKQQSVK 567
Query: 591 YATSAANTIL 600
A +A +L
Sbjct: 568 TAIESACLLL 577
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 130 bits (329), Expect = 3e-32
Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 52/242 (21%)
Query: 225 VTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEH 284
+TND ATI++E++I+HPAAK+I+ E+
Sbjct: 11 ITNDGATILKEMDIQHPAAKMIV--------EV--------------------------- 35
Query: 285 PAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTL 344
S+ Q+ E+GDGT + +G LL A+ L+ G+ + I GY+ A K
Sbjct: 36 ---------SKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRHAAEKCR 86
Query: 345 EILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNE-DFLTDLITKACVSI---LPDGSS 400
EIL T+T + + + K +AI K + L+ L KA SI DG
Sbjct: 87 EILETIT-IAI-SPDDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLK 144
Query: 401 SFNVDNVRITKILGSGLFNSEIVQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTET 458
++N++I K G + +SE++ G+V + K AKI + +CPV+ TE
Sbjct: 145 VNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEV 204
Query: 459 KT 460
+
Sbjct: 205 DS 206
Score = 94.9 bits (237), Expect = 1e-20
Identities = 36/102 (35%), Positives = 51/102 (50%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKI + +CPV+ TE + I S ++ F EE + E + + +GANVV
Sbjct: 186 ENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQ 245
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
DMA +Y+ K G+ VR K DL+RL K AT + L
Sbjct: 246 KGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDL 287
Score = 91.1 bits (227), Expect = 2e-19
Identities = 45/221 (20%), Positives = 80/221 (36%), Gaps = 61/221 (27%)
Query: 426 MVFKRSVEGD----ITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDT 481
+R V+ ++K T A I I + T ++G A V E+
Sbjct: 262 YAVRR-VKKSDLKRLSKVTGATI--------IQDLDQITT---EDVGTAGLVEEKEVRGG 309
Query: 482 AVVVFKLEAAESRIATLVIRGATENYMDDIERAVDDGV---------------------- 519
+ S+ T+++ G TE+ +D ++ A++D +
Sbjct: 310 KMTYVT-GCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVE 368
Query: 520 ---------NTFKGITKVFV-----------KTLAENTGVKSNEVISKLYSAHNEGKKTY 559
+T KG ++ V LAEN G+ +++ +L S H +G K
Sbjct: 369 LSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKGNKNA 428
Query: 560 GFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
G +N V+D E +++ K A+ A A IL
Sbjct: 429 G--LNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMIL 467
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI
ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP:
c.8.5.2 PDB: 1asx_A
Length = 159
Score = 96.1 bits (240), Expect = 2e-23
Identities = 34/102 (33%), Positives = 51/102 (50%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ ++I TE + V I ++ F E N ++ ++ I +GANVV+
Sbjct: 20 KNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQ 79
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL K G+ VR K D+ +L KA A + L
Sbjct: 80 KGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDL 121
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin,
tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Length = 178
Score = 93.8 bits (234), Expect = 3e-22
Identities = 20/102 (19%), Positives = 43/102 (42%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
+I + ++ E++ + I ++ + + EE + + + I +VV+
Sbjct: 26 KNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITE 85
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL + + +R K D R+ +A A + R
Sbjct: 86 KGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRP 127
Score = 30.2 bits (69), Expect = 1.7
Identities = 8/47 (17%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 464 ASELGY-ADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMD 509
++G A + + ++GD + + + T+++RGA+ ++
Sbjct: 132 EDDVGTGAGLLEIKKIGDEYFTFIT-DCKDPKACTILLRGASHHHHH 177
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 2e-09
Identities = 77/464 (16%), Positives = 145/464 (31%), Gaps = 176/464 (37%)
Query: 7 ESYLTTC--------RIPSPEL---ASDGQN--YQTYG----IEKYFT--RN--QTYQCL 45
++Y+T + + L +G +G + YF R+ QTY L
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 46 VCKNKTLFH-------DLAEGARHVERHH--------W-----DQPDKN-------SLFV 78
V L +L E+ W + PDK+ S +
Sbjct: 184 V---GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 79 ISDRFLCNLCGNEYKFRNFIIGRATSNDTIGTNRTRIACSLYPTDSYVTCAGMMATVPYT 138
I + L ++++ T G R+ + + + VT A +A +
Sbjct: 241 I---GVIQLA-------HYVVTAKLLGFTPGELRSYLKGATGHSQGLVT-AVAIAETD-S 288
Query: 139 GITLLKVVREIRRRGAF----RT--VYPTIPSPRRTTLPAAIFQYYDKHFSG-----LEE 187
+ VR+ F R YP T+LP +I + ++ G L
Sbjct: 289 WESFFVSVRKAITV-LFFIGVRCYEAYP------NTSLPPSILEDSLENNEGVPSPML-- 339
Query: 188 AVYRNISACK--DFADTVRTAYGP----------NGMNKIVI-----------NHIDKLF 224
++ N++ + D+ + ++ P NG +V+ + K
Sbjct: 340 SI-SNLTQEQVQDYVNKTN-SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 225 VTN--DAATII---RELEIE----------H-----PAAKLIILGSQMQE-----EEMG- 258
+ D + I R+L+ H PA+ LI +++
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 259 ------DGTNFVIIFAGALLVNADNLLRMI-EHP-----AAKL----II---------LG 293
DG++ + +G++ + ++ I P + I+ LG
Sbjct: 458 PVYDTFDGSDLRV-LSGSIS---ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLG 513
Query: 294 SQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYK 337
+ DGT +I AG L +N D+ G+K
Sbjct: 514 VLTHRNK--DGTGVRVIVAGTLDINPDDDY-----------GFK 544
Score = 59.7 bits (144), Expect = 3e-09
Identities = 109/607 (17%), Positives = 174/607 (28%), Gaps = 247/607 (40%)
Query: 228 DAATIIRELEIEH---------PAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNL 278
DA + R L + H P A + SQ+QE+ F L +
Sbjct: 2 DAYST-RPLTLSHGSLEHVLLVPTA-SFFIASQLQEQ-----------FNKILPEPTEGF 48
Query: 279 LRMIEHPAAK--LI--ILG---SQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSE 331
E P L+ LG S ++ ++G D +L + LT E
Sbjct: 49 AADDE-PTTPAELVGKFLGYVSSLVEPSKVGQ---------------FDQVLNLCLT--E 90
Query: 332 IVNGYKL------ALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGNEDFLTD 385
N Y L ALA L T + K++ IK+ I ++ F
Sbjct: 91 FENCY-LEGNDIHALAAKLLQENDTTLVKTKEL---------IKNYITARIMAKRPF--- 137
Query: 386 LITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMV---FK---------RSVE 433
K S L N ++ I G G QG F+ +
Sbjct: 138 --DKKSNSALFRAVGE---GNAQLVAIFG-G-------QGNTDDYFEELRDLYQTYHVLV 184
Query: 434 GDITKQTKAKIA-----------VYTCPVDIA---TTETKTPPAASELGYADSVAV---- 475
GD+ K + ++ V+T ++I + TP Y S+ +
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD----YLLSIPISCPL 240
Query: 476 --------------------DELGD-------------TAVVV--------FKLEAAESR 494
EL TAV + F +
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF-FVSVRKA 299
Query: 495 IATLVIRG--ATENY----------MDDIERAVDDGVNTF----KGITKVFVKTLAE--N 536
I L G E Y D +E ++GV + +T+ V+ N
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLE--NNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 537 TGVKSNEVISKLYSAHNEGKKT----------YGFDIN--------GENSSVI------- 571
+ + + + + S N G K YG ++ G + S I
Sbjct: 358 SHLPAGKQVE--ISLVN-GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 572 -------------------DAAEAGILDLYLTKM-WA---LK---YAT-SAANTILQQTK 604
A++ DL + + ++ Y T ++ L+
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD--LRVLS 472
Query: 605 AKI------AVYTCPVD-IATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIAD-TGA 656
I + PV TT+ K T ++ D F G + L D TG
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHIL---D----FGPGGASGLGVLTHRNKDGTGV 525
Query: 657 NVVVAGA 663
V+VAG
Sbjct: 526 RVIVAGT 532
Score = 55.1 bits (132), Expect = 8e-08
Identities = 48/282 (17%), Positives = 82/282 (29%), Gaps = 75/282 (26%)
Query: 459 KTPPAASEL-GYADSVAVDELG-----------DTAVVVFKLEAAESRIATLVIRGATEN 506
KT AA ++ AD+ D G + F E + IR EN
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR------IR---EN 1687
Query: 507 YMDDIERAVDDGVNTFKGITKVFVKTLAENTGVKSNEVISK-------L----YSAHNEG 555
Y I + DG + I K + T ++S L +A +
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 556 KKTYGFDIN--------GENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKI 607
K + GE +++ A+ A ++ + + ++ +
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAAL--ASLADVMSI------------ESLVEVVFY-RGMT 1792
Query: 608 AVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIA-DTG-----AN---- 657
P D G +I + S +E L+ ++ + TG N
Sbjct: 1793 MQVAVPRDELGRSNYG--MIAINPGRVAASFSQE-ALQYVVERVGKRTGWLVEIVNYNVE 1849
Query: 658 ---VVVAGAKFG-DMALHYLNKYGLMGV---RLNSKFDLRRL 692
V AG D + LN L + L L +
Sbjct: 1850 NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 54.7 bits (131), Expect = 1e-07
Identities = 56/352 (15%), Positives = 103/352 (29%), Gaps = 111/352 (31%)
Query: 457 ETKTPP--AASELGY-ADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATENYMDDIER 513
E TP LGY + V ++G V+ L + Y++ +
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL-----------NLCLTEFENCYLEGND- 100
Query: 514 AVDDGVNTFKGITKVFVKTL---AENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSV 570
++ L + T VK+ E+I +A K+ + NS++
Sbjct: 101 -----IHAL-------AAKLLQENDTTLVKTKELIKNYITARIMAKRPFD---KKSNSAL 145
Query: 571 IDAAEA------------GILDLYLTKMWALKYAT----------SAANTILQQTKAKIA 608
A G D Y ++ L Y T +A T+ + + +
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDL-YQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 609 ---VYTCPVDI----ATTETKGTV-----------LI--------KSADELMKFSRGEEN 642
V+T ++I LI +L+ F+ GE
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE-- 262
Query: 643 QLEEQIKAIADTGANVVVA--------GAKFGDMALHYLNKYGLMGVRLNSKFDLRRLC- 693
L +K +V A F + +GVR C
Sbjct: 263 -LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR----------CY 311
Query: 694 KAVNATAL-PRLVSTYIKMPSFCPAP--PVQGRERD----RPAQTCKYLHQN 738
+A T+L P ++ ++ P+P + ++ +T +L
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Score = 52.0 bits (124), Expect = 7e-07
Identities = 68/476 (14%), Positives = 130/476 (27%), Gaps = 204/476 (42%)
Query: 382 FLTDLITKACVSILPDGSSSFNVDNVRITKILGSGL--FNSEIVQG----MVFKRSVEGD 435
+++ L+ P F ++L L F + ++G + + ++ +
Sbjct: 67 YVSSLVE-------PSKVGQF-------DQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 436 ITKQTKAK--IAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAES 493
T K K I Y I + S L A
Sbjct: 113 DTTLVKTKELIKNYI-TARIMAKRPFDKKSNSAL--------------------FRAVGE 151
Query: 494 RIATL-VI---RGATENYMDDIERAVDDGVNTFKGITKVFVKTLAENTGVKSNEVISKLY 549
A L I +G T++Y +++ R + T+ + +K AE +S+L
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEEL-RDL---YQTYHVLVGDLIKFSAE--------TLSELI 199
Query: 550 SAHNEGKKTY--GFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAA-----NTILQQ 602
+ +K + G +I ++ YL S ++Q
Sbjct: 200 RTTLDAEKVFTQGLNIL----EWLENPSNTPDKDYLL---------SIPISCPLIGVIQ- 245
Query: 603 TKAKIAVY--TC------PVDI------ATTETKGTV---LIKSAD-------------E 632
+A Y T P ++ AT ++G V I D
Sbjct: 246 ----LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 633 LMKFSRG--------------------EEN-----------------QLEEQIKA----- 650
++ F G EN Q+++ +
Sbjct: 302 VL-FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 651 -------IA--DTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATAL 701
I+ + N+VV+G +L+ LN LR+ KA + L
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPP---QSLYGLNLT------------LRKA-KA--PSGL 402
Query: 702 -----------PRLVSTYIKMPSFCP------APPVQGRERDRPAQTCKYLHQNAL 740
+ + + +P P P +D + + +
Sbjct: 403 DQSRIPFSERKLKFSNRF--LPVASPFHSHLLVPASDLINKDLVKNNVSF-NAKDI 455
Score = 47.0 bits (111), Expect = 2e-05
Identities = 58/313 (18%), Positives = 93/313 (29%), Gaps = 121/313 (38%)
Query: 55 DL---AEGARHVERHHWDQPDKNSL----FVISDRFLCNLCGNEYKFRNFIIGRATSNDT 107
DL ++ A+ V W++ D + F I D I+ N T
Sbjct: 1634 DLYKTSKAAQDV----WNRADNHFKDTYGFSILD----------------IVINNPVNLT 1673
Query: 108 I---GTNRTRIACSLYPTDSYVTCAGMMATVPYTG-ITLLKVVREIRRRGAFRTVYPTIP 163
I G RI ++Y + M+ G + K+ +EI T Y T
Sbjct: 1674 IHFGGEKGKRI------RENY---SAMIFETIVDGKLKTEKIFKEINEHS---TSY-TFR 1720
Query: 164 SPR----RT--TLPA------AIFQY--------YDKHFSG--LEEAVYRNISA--CK-- 197
S + T T PA A F+ D F+G L E Y +A
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE--Y---AALASLAD 1775
Query: 198 --DFADTVRTAY------------GPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAA 243
V + G + + + + + E A
Sbjct: 1776 VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM-------IAINPGRVAASFSQE--AL 1826
Query: 244 KLIILGSQMQEEEMGDGT-------NF------VIIFAGAL--LVNADNLLRMIEHPAAK 288
+ ++ E +G T N+ + AG L L N+L I+
Sbjct: 1827 QYVV-------ERVGKRTGWLVEIVNYNVENQQYVA-AGDLRALDTVTNVLNFIKLQKID 1878
Query: 289 LIILGSQMQEEEM 301
+I L + EE+
Sbjct: 1879 IIELQKSLSLEEV 1891
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 5e-08
Identities = 95/631 (15%), Positives = 195/631 (30%), Gaps = 129/631 (20%)
Query: 176 QY-YDKHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIV-----INHIDKLFVT--N 227
QY Y S E+A N CKD D ++ ++ I+ ++ +LF T +
Sbjct: 15 QYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 228 DAATIIRE-----LEIEHPAAKLIILGSQMQEEEM---GDGTNFV----IIFAGALLVNA 275
++++ L I + L S ++ E+ ++ ++ +
Sbjct: 74 KQEEMVQKFVEEVLRINYK-----FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 276 DNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIF--AG------ALLVNADNLLRMGL 327
N+ R P KL +++ + V+I G AL V ++ +
Sbjct: 129 YNVSR--LQPYLKLRQALLELRPAK------NVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 328 TPSEI--VN-GYKLALAKTLEILPTLTCFEV-KDVRNVENVTKGIKSAIMSKQYGNEDFL 383
+I +N + LE+L L +++ + + + + IK I S Q L
Sbjct: 181 -DFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 384 TDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAK 443
+ C+ +L NV+ K + + +I ++ R + +T A
Sbjct: 239 KSKPYENCLLVL---------LNVQNAKAWNAFNLSCKI---LLTTRFKQ--VTDFLSAA 284
Query: 444 IAVYTCPVDIATTETKTPPAASELGYAD--SVAVDELGDTAVVVFKLEAAESRIATLVIR 501
+ + T TP L +L + S IA +
Sbjct: 285 TTTHISLDHH--SMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPR--RLSIIAESIRD 339
Query: 502 GAT--ENY----MDDIERAVDDGVNTFK-GITKVFVKTLA---ENTGVKSNEVISKLYSA 551
G +N+ D + ++ +N + + L+ + + + ++S ++
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-ILLSLIW-- 396
Query: 552 HNEGKKTYGFDINGE--NSSVI--DAAEA--GILDLYLTKMWALKYATSAANTILQQTKA 605
+ K+ + + S++ E+ I +YL L+ + +I+
Sbjct: 397 -FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 606 KIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQI--------KAIADTGAN 657
D+ L E L + + I
Sbjct: 456 PKTF--DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 658 VVVAGAKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRLVSTYIKMPSFCPA 717
+G+ L L Y +C N RLV+ + F P
Sbjct: 514 WNASGSILNT--LQQLKFYK------------PYICD--NDPKYERLVNAILD---FLPK 554
Query: 718 PP---VQGRERDRPAQTCKYLHQNALDPDDD 745
+ + D L + AL +D+
Sbjct: 555 IEENLICSKYTD--------LLRIALMAEDE 577
Score = 45.2 bits (106), Expect = 9e-05
Identities = 66/467 (14%), Positives = 136/467 (29%), Gaps = 130/467 (27%)
Query: 9 YLTTCRIPSPELASDGQNYQTYGIEKYFTRNQTYQCLVCKNKTLFHDLAEGARHVERHHW 68
+L SPE + Y I+ +T + + + + R
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS------NIKLRIHSIQAELRRLLK 239
Query: 69 DQPDKNSLFVISDRFLCNL---------CGNEYKFRNFIIGRATSN-DTIGTNRTR---- 114
+P +N L V+ + + N C + + R D + T
Sbjct: 240 SKPYENCLLVLLN--VQNAKAWNAFNLSC------KILLTTRFKQVTDFLSAATTTHISL 291
Query: 115 --IACSLYPTDSYVTCAGMMATVPYTGITLLKVVREIRRRGAFRTVYPTIPSPRRTTLPA 172
+ +L P + ++ Y + RE+ +PRR ++ A
Sbjct: 292 DHHSMTLTPDEV----KSLLLK--YLDCRPQDLPREVLTT-----------NPRRLSIIA 334
Query: 173 AI-------FQYYDKHFSGLEEAVYRNISACKDFADT--VRTAYGPNGMNKIVINHIDKL 223
+ + KH + + + I + + + R + D+L
Sbjct: 335 ESIRDGLATWDNW-KHVNC--DKLTTIIESSLNVLEPAEYRKMF-------------DRL 378
Query: 224 FVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIE 283
V +A I P L ++ + + ++ V LV I
Sbjct: 379 SVFPPSAHI--------PTILLSLIWFDVIKSDVMV---VVNKLHKYSLVEKQPKESTIS 427
Query: 284 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRM----GLTPSEIVN----- 334
P+ L + E + +V+ N+ + L P +
Sbjct: 428 IPSIYLELKVKLENEYAL-----------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 335 -GYKLA---LAKTLEILPTLTCF------EVKDVRNVE---NVTKGIKSAIMS-KQYGNE 380
G+ L + + + + F E K +R+ N + I + + K Y +
Sbjct: 477 IGHHLKNIEHPERMTLFRMV--FLDFRFLEQK-IRHDSTAWNASGSILNTLQQLKFY--K 531
Query: 381 DFLTD------LITKACVSILPDGSSSFNVDNVRITKILGSGLFNSE 421
++ D + A + LP N+ + T +L L +
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEE--NLICSKYTDLLRIALMAED 576
Score = 44.1 bits (103), Expect = 2e-04
Identities = 38/254 (14%), Positives = 70/254 (27%), Gaps = 76/254 (29%)
Query: 2 LPRETESYLTTCRIPSP-------ELASDG----QNYQTYGIEKYFT-RNQTYQCLVCKN 49
LPRE +P E DG N++ +K T + L
Sbjct: 318 LPREV------LTT-NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 50 -KTLFHDLA---EGARHVERH----HWDQPDKNSLFVISDRF----LCNLCGNEYKFRNF 97
+ +F L+ A H+ W K+ + V+ ++ L E
Sbjct: 371 YRKMFDRLSVFPPSA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-- 427
Query: 98 IIG-----RATSNDTIGTNRTRIA------------CSLYPTDSYVTCAGMMATVPYTGI 140
I + + +R+ + D Y Y+ I
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF----------YSHI 477
Query: 141 TL-LKVVREIRRRGAFRTVY------------PTIPSPRRTTLPAAI--FQYYDKHFSGL 185
LK + R FR V+ + ++ + ++Y +
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 186 EEAVYRNISACKDF 199
+ R ++A DF
Sbjct: 538 DPKYERLVNAILDF 551
Score = 39.5 bits (91), Expect = 0.005
Identities = 82/465 (17%), Positives = 130/465 (27%), Gaps = 146/465 (31%)
Query: 325 MGLTPSEIVNGYKLALAKTLEILPT-LTCFEVKD--VRNVENVTKGIKSAIMSKQYGNED 381
M E YK +IL F V + ++V+++ K I S E+
Sbjct: 7 MDFETGEHQYQYK-------DILSVFEDAF-VDNFDCKDVQDMPKSILS--------KEE 50
Query: 382 FLTDLITKACVSILPDGSSSFNVDNVR--ITKILGSGLFNSEIVQGMVFKRSVEGDITKQ 439
D I + D V +L E+VQ + VE +
Sbjct: 51 I--DHIIMS-----KD-----AVSGTLRLFWTLLSKQ---EEMVQ-----KFVEEVLRIN 90
Query: 440 TKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIAT-L 498
Y + TE + P + + Y + D L + V K SR+ L
Sbjct: 91 -------YKFLMSPIKTEQRQPSMMTRM-YIE--QRDRLYNDNQVFAKYNV--SRLQPYL 138
Query: 499 VIRGATENYMDDIERAVDDGVNTFKGITK-VFVKTLAENTGVKSN--------------- 542
+R A + + + DGV G K + + V+
Sbjct: 139 KLRQALLE-LRPAKNVLIDGV---LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 543 -----EVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKMWALKYATSAAN 597
E++ KL + T D + I + +A + L +K Y
Sbjct: 195 PETVLEMLQKLLY-QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK----PYENCL-- 247
Query: 598 TILQ--QTKAKIAVY--TCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIAD 653
+L Q + +C + + TT K SA S L+ +
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHIS------LDHHSMTLTP 300
Query: 654 TGANVVVAGAKFGDMALHYLNKYGLMGVRLNSKF-DLRRLCKAVNATALPRLVSTYIKMP 712
D L KY L+ + DL R N PR +S
Sbjct: 301 -------------DEVKSLLLKY------LDCRPQDLPREVLTTN----PRRLSI----- 332
Query: 713 SFCPAPPVQGRERDRPAQTCKYLHQN-------------ALDPDD 744
RD A + H N L+P +
Sbjct: 333 --IAE-----SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Score = 34.8 bits (79), Expect = 0.11
Identities = 50/388 (12%), Positives = 107/388 (27%), Gaps = 132/388 (34%)
Query: 10 LTTCRIPSPELASDGQNYQTYGIEKY---FTRNQTY----QCLVCKNKTL------FHDL 56
LTT R ++ + T ++ + L C+ + L +
Sbjct: 270 LTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 57 AE---GAR-HVERHHWD---QPDKNSLFVISDRFLCNLCGNEYKFRNFIIGRATSNDTIG 109
WD + + L I + L L EY+ + F
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-KMF------------ 375
Query: 110 TNRTRIACSLYPTDSYVTCAGMMATVPYTGITLL----------KVVREIRRRG-AFRTV 158
S++P ++ +P ++L+ VV ++ + +
Sbjct: 376 -----DRLSVFPPSAH---------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ- 420
Query: 159 YPTIPSPRRTTLPAAIFQY-------YDKHFSGLEEAVYRNISACKDFADTVRTAYGPNG 211
P ++P+ + Y H S ++ Y NI D
Sbjct: 421 ----PKESTISIPSIYLELKVKLENEYALHRSIVDH--Y-NIPKTFDS------------ 461
Query: 212 MNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGSQMQEEEMGDGT---------- 261
+ ++ ++D+ F H +G ++ E +
Sbjct: 462 -DDLIPPYLDQYF-------------YSH-------IGHHLKNIEHPERMTLFRMVFLDF 500
Query: 262 NFV---IIFAGALLVN----ADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGA 314
F+ I + L ++ + I E + +F+
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFY--KPYICDNDPKYERLVNAILDFLPK-IEE 557
Query: 315 LLVNAD--NLLRMGL-TPSEIVNGYKLA 339
L+ + +LLR+ L E + ++ A
Sbjct: 558 NLICSKYTDLLRIALMAEDEAI--FEEA 583
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A
{Mycobacterium tuberculosis} PDB: 1sjp_A
Length = 546
Score = 40.6 bits (96), Expect = 0.002
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 18/73 (24%)
Query: 200 ADTVRTAYGPNGMNKIVINHIDKLF----VTNDAATIIRELEIEHPAAKLIILGSQMQEE 255
AD V+ GP G N V+ ++K + +TND +I +E+E+E P K +G+++ +E
Sbjct: 23 ADAVKVTLGPKGRN--VV--LEKKWGAPTITNDGVSIAKEIELEDPYEK---IGAELVKE 75
Query: 256 -------EMGDGT 261
GDGT
Sbjct: 76 VAKKTDDVAGDGT 88
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 40.6 bits (96), Expect = 0.002
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 18/73 (24%)
Query: 200 ADTVRTAYGPNGMNKIVINHIDKLF----VTNDAATIIRELEIEHPAAKLIILGSQMQEE 255
A+ V+ GP G N V+ ++K F +T D T+ +E+E+E +G+Q+ +E
Sbjct: 23 ANAVKVTLGPRGRN--VV--LEKKFGSPTITKDGVTVAKEVELEDHLEN---IGAQLLKE 75
Query: 256 -------EMGDGT 261
GDGT
Sbjct: 76 VASKTNDVAGDGT 88
Score = 32.1 bits (74), Expect = 0.73
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 530 VKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAGILDLYLTKM--W 587
+ +AEN G + + ++ ++ YGF N +D EAGI+D K+
Sbjct: 450 ARQIAENAGYEGSVIVQQI--LAETKNPRYGF--NAATGEFVDMVEAGIVD--PAKVTRS 503
Query: 588 ALKYATSAANTILQQTKAKIA 608
AL+ A S IL T+A +A
Sbjct: 504 ALQNAASIGALIL-TTEAVVA 523
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 40.2 bits (95), Expect = 0.002
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 18/73 (24%)
Query: 200 ADTVRTAYGPNGMNKIVINHIDKLF----VTNDAATIIRELEIEHPAAKLIILGSQMQEE 255
AD V+ GP G N V+ +DK F +T D ++ RE+E+E +G+QM +E
Sbjct: 23 ADAVKVTLGPKGRN--VV--LDKSFGAPTITKDGVSVAREIELEDKFEN---MGAQMVKE 75
Query: 256 -------EMGDGT 261
GDGT
Sbjct: 76 VASKANDAAGDGT 88
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 40.2 bits (95), Expect = 0.002
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 18/73 (24%)
Query: 200 ADTVRTAYGPNGMNKIVINHIDKLF----VTNDAATIIRELEIEHPAAKLIILGSQMQEE 255
AD V+ GP G N V+ IDK F +T D ++ +E+E+ +G+QM E
Sbjct: 24 ADAVKVTLGPKGRN--VV--IDKSFGAPRITKDGVSVAKEIELSDKFEN---MGAQMVRE 76
Query: 256 -------EMGDGT 261
E GDGT
Sbjct: 77 VASRTNDEAGDGT 89
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding,
glycoprotein, membrane, nucleotide-binding,
phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Length = 367
Score = 33.1 bits (76), Expect = 0.29
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 402 FNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
N+ + + LG G F G V++ V G + ++AV T P ++ + + +
Sbjct: 68 VPRKNITLIRGLGHGAF------GEVYEGQVSGMPNDPSPLQVAVKTLP-EVCSEQDE 118
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase;
HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A*
2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Length = 327
Score = 33.1 bits (76), Expect = 0.32
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 402 FNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
N+ + + LG G F G V++ V G + ++AV T P ++ + + +
Sbjct: 27 VPRKNITLIRGLGHGAF------GEVYEGQVSGMPNDPSPLQVAVKTLP-EVCSEQDE 77
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase
domain, hormone-growth factor complex; 1.50A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A*
1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A*
3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A*
1gag_A* 1irk_A 3bu3_A* ...
Length = 322
Score = 32.3 bits (74), Expect = 0.55
Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 405 DNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVD 452
+ + +++ LG G F GMV++ +G + + + ++A+ T
Sbjct: 25 EKITMSRELGQGSF------GMVYEGVAKGVVKDEPETRVAIKTVNEA 66
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease,
double strand DNA repair, protein-DNA CO hydrolase-DNA
complex; HET: DNA; 2.80A {Bacillus subtilis} PDB:
3u44_A*
Length = 1232
Score = 31.9 bits (72), Expect = 0.95
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 634 MKFSRGEENQL-EEQIKAIADTGANVVV-AGA 663
M + ++ ++Q AI TG +++V A A
Sbjct: 1 MNIPKPADSTWTDDQWNAIVSTGQDILVAAAA 32
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation,
signal transduction, MASS spectrometry, transferase;
2.05A {Rattus norvegicus} SCOP: d.144.1.7
Length = 343
Score = 31.1 bits (71), Expect = 1.1
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 402 FNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVD 452
+ +N+ + +G G F G VF+ G + + +AV +
Sbjct: 44 YPRNNIEYVRDIGEGAF------GRVFQARAPGLLPYEPFTMVAVKMLKEE 88
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis,
nucleotide-binding, inhibitor, phosphorylation receptor,
transferase, transmembrane; HET: 00J; 1.50A {Homo
sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A*
3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A*
2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A*
3cpc_A* ...
Length = 316
Score = 31.1 bits (71), Expect = 1.3
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 405 DNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
D +++ K LG G F G V + G T +AV + AT
Sbjct: 27 DRLKLGKPLGRGAF------GQVIEADAFGIDKTATCRTVAVKMLK-EGATHSEH 74
>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase,
neurotrophic tyrosine kinase, receptor-related NTRKR2;
2.90A {Homo sapiens}
Length = 289
Score = 31.0 bits (71), Expect = 1.3
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 402 FNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVD 452
++ VR + LG F G V+K + G + +A+ T
Sbjct: 6 ISLSAVRFMEELGEDRF------GKVYKGHLFGPAPGEQTQAVAIKTLKDK 50
>3hxl_A Uncharacterized protein DSY3957; alpha-beta three-domained
protein., structural genomics, PSI protein structure
initiative; 1.90A {Desulfitobacterium hafniense}
Length = 446
Score = 31.2 bits (70), Expect = 1.4
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 15/142 (10%)
Query: 450 PVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGATE---- 505
D + T +EL + L V+F A + A + ++
Sbjct: 125 IDDETKFDVSTLVDGAELDKQTVSDIAGLAANDWVIFSGTGALTETAGAPLINGSDGAVT 184
Query: 506 -----NYMDDIER------AVDDGVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNE 554
+Y+ +E A+ + K F K L ++ G K V+ +A E
Sbjct: 185 NQAYIDYLAAVEIFDFNTIALPSTDDALKATFTAFAKRLRDDEGKKIQVVLENYPAADYE 244
Query: 555 GKKTYGFDINGENSSVIDAAEA 576
G + + + +++ AA+A
Sbjct: 245 GVISVKNGVVLADGTILTAAQA 266
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease
mutation, glycoprotein, nucleot binding,
phosphorylation, receptor; HET: ADP; 1.90A {Homo
sapiens} PDB: 3bpr_A* 2p0c_A*
Length = 313
Score = 31.1 bits (71), Expect = 1.4
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 405 DNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
+ + + KILG G F G V + +++ + K+AV T +D ++
Sbjct: 34 NLLILGKILGEGEF------GSVMEGNLKQEDGTSL--KVAVKTMKLDNSSQREI 80
>2xoc_A E3 ubiquitin-protein ligase CHFR; zinc-binding, poly(ADP-ribose)
mitosis, antephase checkpoint, cell cycle; HET: PGE ADP
ADE; 1.89A {Homo sapiens} PDB: 2xoy_A* 2xoz_A* 2xp0_A
Length = 261
Score = 30.9 bits (69), Expect = 1.4
Identities = 17/100 (17%), Positives = 27/100 (27%), Gaps = 16/100 (16%)
Query: 9 YLTTCRIPSPELASDGQNYQTYG--IEKYFTRNQ-----TYQCLVCKNKTLFHDLAEGAR 61
Y R + ++ N L + T + L E
Sbjct: 118 YWGCTRTGCYGCLAPFCELNLGDKCLDGVLNNNSYESDILKNYLATRGLTWKNMLTESLV 177
Query: 62 HVERHHWDQPDKNSLFVISDRFLCNLCGNE------YKFR 95
++R + D V D LC CG Y++R
Sbjct: 178 ALQRGVFLLSDYR---VTGDTVLCYCCGLRSFRELTYQYR 214
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor;
HET: V4Z; 2.75A {Homo sapiens}
Length = 329
Score = 30.7 bits (70), Expect = 1.7
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 402 FNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTC 449
++ + LG G F G VF + +Q K +AV
Sbjct: 38 IKRRDIVLKWELGEGAF------GKVFLAECHNLLPEQDKMLVAVKAL 79
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET;
nucleotide-binding, hirschsprung disease,
phosphorylation, disease mutation; HET: ACK; 2.00A {Homo
sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A*
2ivv_A*
Length = 314
Score = 30.7 bits (70), Expect = 1.8
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 405 DNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
N+ + K LG G F G V K + + +AV + A+
Sbjct: 23 KNLVLGKTLGEGEF------GKVVKATAFHLKGRAGYTTVAVKMLK-ENASPSEL 70
>3v5q_A NT-3 growth factor receptor; kinase domain, kinase,
phosphorylation, transferase-transfer inhibitor complex;
HET: 0F4; 2.20A {Homo sapiens}
Length = 297
Score = 30.7 bits (70), Expect = 1.9
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 402 FNVDNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCP 450
++ + + LG G F G VF + K +AV
Sbjct: 12 IKRRDIVLKRELGEGAF------GKVFLAECYNLSPTKDKMLVAVKALK 54
>2pju_A Propionate catabolism operon regulatory protein; structural
genomics, PRPR, transcriptional regulation, PSI- 2,
protein structure initiative; 2.10A {Escherichia coli}
SCOP: c.92.3.1
Length = 225
Score = 29.9 bits (67), Expect = 2.4
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 632 ELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNSK 686
L + S E QI + G VV D+A + G+ G+ + S
Sbjct: 131 RLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLA----EEAGMTGIFIYSA 181
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition,
juxtamembrane domain, transferase; 2.10A {Homo sapiens}
SCOP: d.144.1.7
Length = 344
Score = 29.6 bits (67), Expect = 3.4
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 405 DNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAV 446
+N+ K+LGSG F G V + G ++AV
Sbjct: 45 ENLEFGKVLGSGAF------GKVMNATAYGISKTGVSIQVAV 80
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein
structure initiative; HET: SO4 GOL; 1.49A {Clostridium
acetobutylicum atcc 824}
Length = 196
Score = 29.4 bits (66), Expect = 3.7
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 632 ELMKFSRGEENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNS 685
++ +F E+++ I + +VV+G D A K GL G +NS
Sbjct: 119 KIKEFLFSSEDEITTLISKVKTENIKIVVSGKTVTDEA----IKQGLYGETINS 168
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 29.5 bits (65), Expect = 4.1
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 10 LTTCRIPSPELASDGQNYQTYGIEKYFTRNQ---TYQCLVCKNKTLFHDLA 57
++ R+ P + + ++ Q + + T+QC VC+ +LA
Sbjct: 254 ISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA 304
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling,
decatenation, DNA bindi topology; 1.70A {Escherichia
coli}
Length = 256
Score = 29.3 bits (65), Expect = 4.2
Identities = 16/154 (10%), Positives = 41/154 (26%), Gaps = 3/154 (1%)
Query: 517 DGVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEA 576
V + + + G + ++ ++ A++A
Sbjct: 45 QPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDA 104
Query: 577 GILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVD---IATTETKGTVLIKSADEL 633
G + + A L + + + G +L+ +L
Sbjct: 105 GYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDL 164
Query: 634 MKFSRGEENQLEEQIKAIADTGANVVVAGAKFGD 667
+ S+G+ N++ A A G + +
Sbjct: 165 PQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPP 198
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain,
kinase inhibitor complex, transferase; HET: 5CN; 1.80A
{Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A*
3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Length = 333
Score = 29.5 bits (67), Expect = 4.3
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 405 DNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAV 446
+N++ K LG+G F G V + + G + K+AV
Sbjct: 46 NNLQFGKTLGAGAF------GKVVEATAFGLGKEDAVLKVAV 81
>2nyn_A Phenylalanine/histidine ammonia-lyase; methylidene imidazolone
prosthetic group; HET: MDO; 1.90A {Anabaena variabilis}
PDB: 3czo_A* 2nyf_A*
Length = 565
Score = 29.3 bits (65), Expect = 5.0
Identities = 14/90 (15%), Positives = 34/90 (37%)
Query: 301 MGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRN 360
+G +F + F G + L ++ L+P ++ LA+ ++ + V D +
Sbjct: 180 IGLDPSFKVDFNGKEMDAPTALRQLNLSPLTLLPKEGLAMMNGTSVMTGIAANCVYDTQI 239
Query: 361 VENVTKGIKSAIMSKQYGNEDFLTDLITKA 390
+ + G+ + + G I +
Sbjct: 240 LTAIAMGVHALDIQALNGTNQSFHPFIHNS 269
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
domain, structural GE consortium, SGC; 2.39A {Homo
sapiens} PDB: 2asq_B
Length = 360
Score = 29.2 bits (64), Expect = 5.5
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 10 LTTCRIPSPELASDGQNYQTYGIEKYFTRNQ---TYQCLVCKNKTLFHDLA 57
L R+ P A + Q + Y N+ T+ C VC K + L
Sbjct: 220 LGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI 270
>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia
pickettii} SCOP: b.92.1.3 c.1.9.6
Length = 457
Score = 28.7 bits (65), Expect = 7.3
Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 487 KLEAAESRIAT-----LVIRGATENYMDDIERAVDDGVNTFK 523
A + A +++ T++ ++++E D G+ +FK
Sbjct: 107 WDGMAGGKSAIDYGYHIIVLDPTDSVIEELEVLPDLGITSFK 148
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene
homolog; kinase, structure, inhibitor, STI-571, gleevec,
transferase activator; HET: STI; 1.60A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Length = 313
Score = 28.8 bits (65), Expect = 7.4
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 405 DNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAV 446
+ + K LG+G F G V + + G I +AV
Sbjct: 23 NRLSFGKTLGAGAF------GKVVEATAYGLIKSDAAMTVAV 58
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain,
kinase, transferase-transferase inhibitor COM; HET: 42Q;
1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A*
3hng_A*
Length = 359
Score = 28.7 bits (64), Expect = 7.5
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 405 DNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
D +++ K LG G F G V + G T +AV +E +
Sbjct: 22 DRLKLGKPLGRGAF------GQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHR 70
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein
structure initiative, midwest center for structural
genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP:
c.47.1.13
Length = 175
Score = 27.8 bits (62), Expect = 8.0
Identities = 20/157 (12%), Positives = 40/157 (25%), Gaps = 30/157 (19%)
Query: 194 SACKDFADTV---RTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKLIILGS 250
C+ + + +G + +I DK + + I +
Sbjct: 40 PYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNV---------MHHYIDYSA 90
Query: 251 QMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGTNFVII 310
Q + D + A ++E++ + VI
Sbjct: 91 PEQALSALH----------KMFATQDEWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIA 140
Query: 311 FAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEIL 347
A A + P+ I+ Y + T E L
Sbjct: 141 EANAAHIQF--------VPTIIIGEYIFDESVTEEEL 169
>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate,
product-bound, structural genomics, protein STRU
initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens
str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A
Length = 419
Score = 28.7 bits (64), Expect = 8.1
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 320 DNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQYGN 379
D LL G++ EI +GY L + L++L ++ +R V VT + + Y
Sbjct: 140 DTLLSEGVSTIEIKSGYGLDIETELKMLRVAR--RLETLRPVRIVTSYLAAHATPADY-- 195
Query: 380 EDFLTDLITKACVSILPD 397
+ D IT + L
Sbjct: 196 KGRNADYITDVVLPGLEK 213
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor,
receptor tyrosine kinase, spirocyc kinase domain,
phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus
musculus}
Length = 323
Score = 28.5 bits (64), Expect = 9.4
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 405 DNVRITKILGSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTE 457
+ ++LG G F G V + ++ + K+AV DI +
Sbjct: 23 QQFTLGRMLGKGEF------GSVREAQLKQEDGSFV--KVAVKMLKADIIASS 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.385
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,396,069
Number of extensions: 724539
Number of successful extensions: 2134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2019
Number of HSP's successfully gapped: 164
Length of query: 745
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 644
Effective length of database: 3,881,772
Effective search space: 2499861168
Effective search space used: 2499861168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.0 bits)