RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16434
(745 letters)
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 245
Score = 110 bits (276), Expect = 7e-28
Identities = 65/277 (23%), Positives = 113/277 (40%), Gaps = 50/277 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+ A NI A K AD VRT GP GM+K++++ I + ++ND ATI++E++
Sbjct: 5 KNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMD-------- 56
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
+EHP AK+I+ S+ Q+ +GDGT
Sbjct: 57 ------------------------------------VEHPTAKMIVEVSKAQDTAVGDGT 80
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
++ +G LL A+ LL G+ P+ I NGY+LA+ + +I+ +
Sbjct: 81 TTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAE 140
Query: 366 KGIKSAIMSKQYGNEDFLT-DLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQ 424
++ A + G + L + KA I + + +D + L + I
Sbjct: 141 LAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISV 200
Query: 425 GMVFKRSVEGDITKQ-----TKAKIAVYTCPVDIATT 456
G+ + GD+ + + K V++AT
Sbjct: 201 GVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATM 237
Score = 65.5 bits (159), Expect = 2e-12
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 503 ATENYMDDIERAVDDGVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFD 562
Y + + + F ++ +TLAEN G+ + KL + +G+ + G D
Sbjct: 144 RLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVD 203
Query: 563 INGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
+ +N+ V D G++D K AL+ A A IL
Sbjct: 204 L--DNNGVGDMKAKGVVDPLRVKTHALESAVEVATMIL 239
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 243
Score = 97.5 bits (242), Expect = 3e-23
Identities = 38/100 (38%), Positives = 67/100 (67%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
++A+ NI A +++VR++ GP GM+K++++ + + +TND TI++E+++EHPAAK+
Sbjct: 1 KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKM 60
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHP 285
++ S+ Q+ +GDGT +I AG LL A L+ HP
Sbjct: 61 MVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHP 100
Score = 66.7 bits (162), Expect = 9e-13
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 503 ATENYMDDIERAVDDGVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFD 562
+Y I + F + + LAEN G+ +++ KL + H +G KTYG
Sbjct: 141 RLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYG-- 198
Query: 563 INGENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
IN + D + G+++ A++ AT AA IL
Sbjct: 199 INVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMIL 236
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon
Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}
Length = 153
Score = 90.4 bits (224), Expect = 8e-22
Identities = 41/102 (40%), Positives = 56/102 (54%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ +++ TET + I S D+LM F EE L++ + IA TGANVV
Sbjct: 19 ENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQ 78
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL KYG+M VR K D+ +L KA A + +
Sbjct: 79 KGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNV 120
Score = 33.4 bits (76), Expect = 0.045
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 425 GMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
G+V + V + AKIA+ +++ TET
Sbjct: 2 GVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDA 39
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 258
Score = 93.3 bits (231), Expect = 1e-21
Identities = 65/262 (24%), Positives = 110/262 (41%), Gaps = 52/262 (19%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
+ + G +A NI A + A+TVRT GP GM+K++++ + + VTND ATI+ +++
Sbjct: 9 QRYVG-RDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKID-- 65
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
++HPAAK+++ ++ Q++
Sbjct: 66 ------------------------------------------LQHPAAKMMVEVAKTQDK 83
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVR 359
E GDGT ++ AG LL A+ LL + PS I GY LA K EIL + V
Sbjct: 84 EAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRAVLPAG 143
Query: 360 NVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPD------GSSSFNVDNVRITKIL 413
+ I+ +KQ G ++ L + I+P G + + I++
Sbjct: 144 GAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHK 203
Query: 414 GSGL-FNSEIVQGMVFKRSVEG 434
GL ++ +G +G
Sbjct: 204 NRGLGIGIDVFEGKPADMLEKG 225
Score = 53.3 bits (127), Expect = 3e-08
Identities = 33/156 (21%), Positives = 54/156 (34%), Gaps = 5/156 (3%)
Query: 445 AVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRGAT 504
+ ++ A A + L + A+ I +
Sbjct: 98 ELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRAVLPAGGAPEIE---LAIRL 154
Query: 505 ENYMDDIERAVDDGVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDIN 564
+ Y + + F K+ KTLAEN G+ + E++ K+ S H G D+
Sbjct: 155 DEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDV- 213
Query: 565 GENSSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
D E GI++ K A+K A+ AA IL
Sbjct: 214 -FEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMIL 248
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon
Thermoplasma acidophilum, beta chain [TaxId: 2303]}
Length = 152
Score = 87.8 bits (217), Expect = 5e-21
Identities = 36/102 (35%), Positives = 52/102 (50%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ P++I E + I+ + KF EEN L E + I GANVV+
Sbjct: 18 KDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQ 77
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
DMA HYL++ G+ VR K D+ +L KA A+ + +
Sbjct: 78 KGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTI 119
Score = 33.5 bits (76), Expect = 0.039
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 425 GMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
G++ + G AKIA+ P++I E T
Sbjct: 1 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDT 38
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma
acidophilum, alpha chain [TaxId: 2303]}
Length = 152
Score = 81.6 bits (201), Expect = 8e-19
Identities = 34/102 (33%), Positives = 51/102 (50%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
AKIA+ ++I TE + V I ++ F E N ++ ++ I +GANVV+
Sbjct: 20 KNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQ 79
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL K G+ VR K D+ +L KA A + L
Sbjct: 80 KGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDL 121
Score = 33.8 bits (77), Expect = 0.029
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 423 VQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKT 460
+ G+V + AKIA+ ++I TE +
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEA 40
Score = 28.0 bits (62), Expect = 2.7
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 462 PAASELGYADSVAVDELGDTAVVVFK 487
S LG A++V ++GD +
Sbjct: 124 LTPSVLGEAETVEERKIGDDRMTFVM 149
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus),
gamma chain [TaxId: 10090]}
Length = 168
Score = 78.2 bits (192), Expect = 2e-17
Identities = 20/102 (19%), Positives = 43/102 (42%)
Query: 603 TKAKIAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAG 662
+I + ++ E++ + I ++ + + EE + + + I +VV+
Sbjct: 24 KNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITE 83
Query: 663 AKFGDMALHYLNKYGLMGVRLNSKFDLRRLCKAVNATALPRL 704
D+A HYL + + +R K D R+ +A A + R
Sbjct: 84 KGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRP 125
Score = 37.3 bits (86), Expect = 0.002
Identities = 7/61 (11%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 419 NSEIVQGMVFKRSV--EGDITKQTKAKIAVYTCPVDIATTETKTPPAASELGYADSVAVD 476
+S +++G++ + V +I + ++ E++T + +
Sbjct: 1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 60
Query: 477 E 477
E
Sbjct: 61 E 61
Score = 26.2 bits (57), Expect = 9.7
Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 443 KIAVYTCPVDIATTETKTPPAASELGYADSVAVDELGDTAVVVFKLEAAESRIATLVIRG 502
+IA ++ E A + + ++GD + + + T+++RG
Sbjct: 112 RIARACGARIVSRPEELRED--DVGTGAGLLEIKKIGDEYFTFIT-DCKDPKACTILLRG 168
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 107
Score = 71.5 bits (175), Expect = 8e-16
Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
Query: 357 DVRNVENVTKGIKSAIMSKQYGNE-DFLTDLITKACVSILP--DGSSSFNVDNVRITKIL 413
D + E + K ++I K + + L L +A + DG ++DN++ K
Sbjct: 2 DPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKA 61
Query: 414 GSGLFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
G G+ SE+V+ + G + + A+ +
Sbjct: 62 GEGVEESELVKAVTILIR-GGTEHVIDEVERALEDAVKVVKDVMED 106
Score = 30.2 bits (68), Expect = 0.23
Identities = 2/20 (10%), Positives = 6/20 (30%)
Query: 604 KAKIAVYTCPVDIATTETKG 623
+ + A+ + G
Sbjct: 88 EVERALEDAVKVVKDVMEDG 107
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia
coli [TaxId: 562]}
Length = 252
Score = 71.3 bits (174), Expect = 2e-14
Identities = 46/283 (16%), Positives = 90/283 (31%), Gaps = 54/283 (19%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+A + + AD V+ GP G N ++ +T D ++ RE+E+E
Sbjct: 9 NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDK---- 64
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
E+ A+++ + + GDGT
Sbjct: 65 ------------------------------------FENMGAQMVKEVASKANDAAGDGT 88
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
+ A A++ + G+ P ++ G A+ +E L V V
Sbjct: 89 TTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVE---ELKALSVGVVAGGGVAL 145
Query: 366 KGIKSAIMSKQYGNED------FLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFN 419
+ S + + N D + I+ + +V + G+ +N
Sbjct: 146 IRVASKLADLRGQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYN 205
Query: 420 S-EIVQGMVFKRSVEGDITKQTKAKI--AVYTCPVDIATTETK 459
+ G + + D TK T++ + A + + TTE
Sbjct: 206 AATEEYGNMIDMGI-LDPTKVTRSALQYAASVAGL-MITTECM 246
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 105
Score = 65.3 bits (159), Expect = 1e-13
Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 360 NVENVTKGIKSAIMSKQYGNE-DFLTDLITKACVSILP--DGSSSFNVDNVRITKILGSG 416
+ + K +A+ K G DFL DL+ KA ++ DG + + N+++ K G
Sbjct: 2 DDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGS 61
Query: 417 LFNSEIVQGMVFKRSVEGDITKQTKAKIAVYTCPVDIATTETK 459
+ +++ + + G ++ + A+ +A T+
Sbjct: 62 VNDTQFISAVSILIR-GGTDHVVSEVERALNDAIRVVAITKED 103
Score = 28.3 bits (63), Expect = 0.97
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 603 TKAKIAVYTCPVDIATTETKG 623
++ + A+ +A T+ G
Sbjct: 84 SEVERALNDAIRVVAITKEDG 104
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 252
Score = 68.3 bits (166), Expect = 3e-13
Identities = 45/282 (15%), Positives = 91/282 (32%), Gaps = 51/282 (18%)
Query: 186 EEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIEHPAAKL 245
+A R + AD V+ GP G N ++ +T D ++ +E+E+
Sbjct: 9 SDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDK---- 64
Query: 246 IILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEEEMGDGT 305
E+ A+++ + +E GDGT
Sbjct: 65 ------------------------------------FENMGAQMVREVASRTNDEAGDGT 88
Query: 306 NFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLTCFEVKDVRNVENVT 365
+ A A++ + G+ P ++ G +A AK +E + + V
Sbjct: 89 TTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARGIVVGGGVALVQG 148
Query: 366 KGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGLFNSEIVQ- 424
+ + ++D +I +A + + + + VD + + +
Sbjct: 149 AKVLEGLSGAN-SDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNA 207
Query: 425 -----GMVFKRSVEGDITKQTKAKI--AVYTCPVDIATTETK 459
G +FK V D K + + A + + TTE
Sbjct: 208 QTEEYGDMFKFGVI-DPAKVVRTALEDAASVAGL-LITTEAM 247
Score = 30.5 bits (68), Expect = 0.67
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 518 GVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAG 577
G+ + + ++ +AEN GV V K+ + F N + D + G
Sbjct: 165 GIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESS-----DKAFGFNAQTEEYGDMFKFG 219
Query: 578 ILDLYLTKMWALKYATSAANTILQQTKAKIA 608
++D AL+ A S A ++ T+A IA
Sbjct: 220 VIDPAKVVRTALEDAASVAGLLI-TTEAMIA 249
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus
thermophilus [TaxId: 274]}
Length = 255
Score = 57.6 bits (138), Expect = 9e-10
Identities = 47/290 (16%), Positives = 87/290 (30%), Gaps = 51/290 (17%)
Query: 180 KHFSGLEEAVYRNISACKDFADTVRTAYGPNGMNKIVINHIDKLFVTNDAATIIRELEIE 239
K E A A+ V+ GP G N ++ +T D T+ +E+E+E
Sbjct: 2 KILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELE 61
Query: 240 HPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHPAAKLIILGSQMQEE 299
+E+ A+L+ + +
Sbjct: 62 DH----------------------------------------LENIGAQLLKEVASKTND 81
Query: 300 EMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALAKTLEILPTLT--CFEVKD 357
GDGT + A A++ + G P + G + A+ +E + L V
Sbjct: 82 VAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVGIVPG 141
Query: 358 VRNVENVTKGIKSAIMSKQYGNEDFLTDLITKACVSILPDGSSSFNVDNVRITKILGSGL 417
++ K G+E ++ +A + + + I + + +
Sbjct: 142 GGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAET 201
Query: 418 FNSE----IVQGMVFKRSVEG--DITKQTKAKI--AVYTCPVDIATTETK 459
N G G D K T++ + A + I TTE
Sbjct: 202 KNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGAL-ILTTEAV 250
Score = 42.6 bits (99), Expect = 9e-05
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 518 GVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGENSSVIDAAEAG 577
G + + + +AEN G + + ++ ++ + + N +D EAG
Sbjct: 167 GAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNP----RYGFNAATGEFVDMVEAG 222
Query: 578 ILDLYLTKMWALKYATSAANTILQQTKAKIA 608
I+D AL+ A S IL T+A +A
Sbjct: 223 IVDPAKVTRSALQNAASIGALIL-TTEAVVA 252
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 107
Score = 51.0 bits (122), Expect = 1e-08
Identities = 16/102 (15%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 360 NVENVTKGIKSAIMSKQYGNE-DFLTDLITKACVSILP--DGSSSFNVDNVRITKILGSG 416
+ K ++++ SK D L ++ +A S+ DG + DN+++ K G
Sbjct: 4 EKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGA 63
Query: 417 LFNSEIVQGMVF------KRSVEGDITKQTKAKIAVYTCPVD 452
+ +++++ V V ++ + + V ++
Sbjct: 64 IDDTQLINKAVSILVRGETEHVVDEMERSITDSLHVVASALE 105
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain
{Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Length = 180
Score = 42.1 bits (98), Expect = 7e-05
Identities = 17/96 (17%), Positives = 32/96 (33%)
Query: 282 IEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMGLTPSEIVNGYKLALA 341
E A+L+ ++ ++ GDGT + A AL+ + G P + G + A+
Sbjct: 3 YEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVE 62
Query: 342 KTLEILPTLTCFEVKDVRNVENVTKGIKSAIMSKQY 377
K E L + + +
Sbjct: 63 KVTETLLKGAKIVAGGGVTLLQAAPTLDELKLEGDE 98
Score = 41.3 bits (96), Expect = 1e-04
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 508 MDDIERAVDDGVNTFKGITKVFVKTLAENTGVKSNEVISKLYSAHNEGKKTYGFDINGEN 567
+E G N K + +K +A N+G++ V K+ + G +N +
Sbjct: 91 ELKLEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLP------AGHGLNAQT 144
Query: 568 SSVIDAAEAGILDLYLTKMWALKYATSAANTIL 600
D AG+ D AL+ A S A L
Sbjct: 145 GVYEDLLAAGVADPVKVTRSALQNAASIAGLFL 177
Score = 36.3 bits (83), Expect = 0.006
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 238 IEHPAAKLIILGSQMQEEEMGDGTNFVIIFAGALLVNADNLLRMIEHP 285
E A+L+ ++ ++ GDGT + A AL+ + +P
Sbjct: 3 YEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANP 50
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory
protein PrpR {Escherichia coli [TaxId: 562]}
Length = 186
Score = 28.5 bits (64), Expect = 1.9
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 641 ENQLEEQIKAIADTGANVVVAGAKFGDMALHYLNKYGLMGVRLNS 685
E QI + G VV + + G+ G+ + S
Sbjct: 128 EEDARGQINELKANGTEAVVGAG----LITDLAEEAGMTGIFIYS 168
>d1tvla_ c.1.16.4 (A:) Putative monooxygenase YtnJ {Bacillus
subtilis [TaxId: 1423]}
Length = 430
Score = 29.1 bits (64), Expect = 1.9
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 8/31 (25%)
Query: 144 KVVREIRRRGAFRTVYPT--------IPSPR 166
KV+ ++ RG +R Y + P+
Sbjct: 400 KVIPILQERGLYRQDYRGGTLRENLGLGIPQ 430
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 25.5 bits (56), Expect = 8.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 520 NTFKGITKVFVKTLAENTGVK 540
+ +GITK ++ LA GVK
Sbjct: 5 DNIQGITKPAIRRLARRGGVK 25
>d1cpqa_ a.24.3.2 (A:) Cytochrome c' {Rhodobacter capsulatus [TaxId:
1061]}
Length = 129
Score = 26.1 bits (57), Expect = 9.7
Identities = 14/93 (15%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 563 INGENSSVIDAAEAGILDLYLTKMWALKYATSAANTILQQTKAKIAVYTCPVDIATTETK 622
++ A + + T + L A +++ + QT+AK A++ D K
Sbjct: 28 AKAFDAEAAKVEAAKLEKILATDVAPLFPAGTSSTDLPGQTEAKAAIWANMDDFG---AK 84
Query: 623 GTVLIKSADELMKFSR-GEENQLEEQIKAIADT 654
G + ++ ++ + G+ ++ + T
Sbjct: 85 GKAMHEAGGAVIAAANAGDGAAFGAALQKLGGT 117
>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 26.0 bits (57), Expect = 10.0
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 607 IAVYTCPVDIATTETKGTVLIKSADELMKFSRGEENQLEEQIKAIADTGANVVVAGAK-- 664
I V+ + + + +L +F E + + + + A+T A+ AG +
Sbjct: 6 IGVFRSGGE-------KALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGERQS 58
Query: 665 --FGDMALH-YLNKYGLMGV 681
G+ H Y G+ GV
Sbjct: 59 IEEGNYIGHVYARSEGICGV 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.385
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,689,740
Number of extensions: 126788
Number of successful extensions: 458
Number of sequences better than 10.0: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 44
Length of query: 745
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 653
Effective length of database: 1,144,436
Effective search space: 747316708
Effective search space used: 747316708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)