BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16435
(277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
Length = 116
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 69/97 (71%)
Query: 112 GMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRA 171
M+KV++ +K+H+D+WPF +PVDE+ APNYY+ IK PMD++ ME+KL+ G Y T +F
Sbjct: 20 AMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVN 79
Query: 172 DFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSRY 208
D + + NCRKYNG +EYT M L++ F A+ ++
Sbjct: 80 DMKTMFRNCRKYNGESSEYTKMSDNLERCFHRAMMKH 116
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%)
Query: 112 GMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRA 171
+ ++ L++H AWPF PV++ P+YY+ IK PMDL+ ME KL++ +Y+ F
Sbjct: 17 AIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIY 76
Query: 172 DFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAV 205
D +L+ +NCR YNG + Y RL++ F + V
Sbjct: 77 DARLVFNNCRMYNGENTSYYKYANRLEKFFNNKV 110
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 105 TEEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYK 164
TE+D G+ +V+ L++H+ AWPF +PVD AP+YY IK PMDL MEE++ Y+
Sbjct: 11 TEKDYE-GLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYE 69
Query: 165 TFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIF 201
+F AD I DNCR YN D+ + L+ F
Sbjct: 70 KLTEFVADMTAIFDNCRYYNPSDSPFYQCAEVLESFF 106
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 105 TEEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYK 164
TE+D G+ +V+ L++H+ AWPF +PVD AP+YY IK PMDL MEE++ Y+
Sbjct: 18 TEKDYE-GLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYE 76
Query: 165 TFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIF 201
+F AD I DNCR YN D+ + L+ F
Sbjct: 77 KLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFF 113
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 105 TEEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYK 164
TE+D G+ +V+ L++H+ AWPF +PVD AP+YY IK PMDL MEE++ Y+
Sbjct: 11 TEKDYE-GLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYE 69
Query: 165 TFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIF 201
+F AD I DNCR YN D+ + L+ F
Sbjct: 70 KLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFF 106
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 105 TEEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYK 164
TE+D G+ +V+ L++H+ AWPF +PVD AP+YY IK PMDL MEE++ Y+
Sbjct: 70 TEKDYE-GLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYE 128
Query: 165 TFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIF 201
+F AD I DNCR YN D+ + L+ F
Sbjct: 129 KLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFF 165
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 105 TEEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYK 164
TE+D G+ +V+ L++H+ AWPF +PVD AP+YY IK PMDL MEE++ Y+
Sbjct: 70 TEKDYE-GLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYE 128
Query: 165 TFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIF 201
+F AD I DNCR YN D+ + L+ F
Sbjct: 129 KLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFF 165
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5
Length = 103
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 58/95 (61%)
Query: 107 EDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTF 166
+ L + ++ ++KSH AWPF +PV ++ AP+YYE I+ P+DL M E+L + Y T
Sbjct: 2 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTR 61
Query: 167 GQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIF 201
F AD Q ++ NCR+YN D+EY L++ F
Sbjct: 62 KLFVADLQRVIANCREYNPPDSEYCRCASALEKFF 96
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
Length = 112
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 58/95 (61%)
Query: 107 EDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTF 166
+ L + ++ ++KSH AWPF +PV ++ AP+YYE I+ P+DL M E+L + Y T
Sbjct: 6 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTR 65
Query: 167 GQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIF 201
F AD Q ++ NCR+YN D+EY L++ F
Sbjct: 66 KLFVADLQRVIANCREYNPPDSEYCRCASALEKFF 100
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 98 STGGYRSTE----EDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTR 153
S G +S E + L + ++ ++KSH+ AWPF +PV AP YYE I+ PMDL
Sbjct: 1 SMGKEKSKEPRDPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKT 60
Query: 154 MEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIF 201
M E+L Y + F AD Q + NC++YN ++EY L++ F
Sbjct: 61 MSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFF 108
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%)
Query: 113 MHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRAD 172
+ ++ ++KSH+ AWPF +PV AP YYE I+ PMDL M E+L Y + F AD
Sbjct: 18 LKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMAD 77
Query: 173 FQLIVDNCRKYNGLDNEYTDMVRRLQQIF 201
Q + NC++YN ++EY L++ F
Sbjct: 78 LQRVFTNCKEYNPPESEYYKCANILEKFF 106
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 105 TEEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYK 164
TE+D G+ +V+ L++H+ AWPF +PVD AP+YY IK P DL EE++ Y+
Sbjct: 70 TEKDYE-GLKRVLRSLQAHKXAWPFLEPVDPNDAPDYYGVIKEPXDLATXEERVQRRYYE 128
Query: 165 TFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIF 201
+F AD I DNCR YN D+ + L+ F
Sbjct: 129 KLTEFVADXTKIFDNCRYYNPSDSPFYQCAEVLESFF 165
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%)
Query: 116 VMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQL 175
++ +++HEDAWPF PV+ P Y + IK+PMD + + EKL +G+Y F D +L
Sbjct: 21 ILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRL 80
Query: 176 IVDNCRKYNGLDNEYTDMVRRLQQIF 201
+ DNC +N D++ +++ F
Sbjct: 81 VFDNCETFNEDDSDIGRAGHNMRKYF 106
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%)
Query: 116 VMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQL 175
++ +++HEDAWPF PV+ P Y + IK+PMD + + EKL +G+Y F D +L
Sbjct: 18 ILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRL 77
Query: 176 IVDNCRKYNGLDNEYTDMVRRLQQIF 201
+ DNC +N D++ +++ F
Sbjct: 78 VFDNCETFNEDDSDIGRAGHNMRKYF 103
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 126 AWPFCDPVDEATAP--NYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKY 183
AWPF +PVD NYY+ +K PMDL ++ K+D YK +F AD +L+ NC KY
Sbjct: 35 AWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYKDAYEFAADVRLMFMNCYKY 94
Query: 184 NGLDNEYTDMVRRLQQIF 201
N D+E M R LQ +F
Sbjct: 95 NPPDHEVVAMARTLQDVF 112
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%)
Query: 109 LRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQ 168
L + + V+++L+ + A F PV P+Y + IK PMD M ++L+A YK +
Sbjct: 14 LTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHE 73
Query: 169 FRADFQLIVDNCRKYNGLDNEYTDMVRRLQ 198
F DF LI+DNC KYN D + RL+
Sbjct: 74 FEEDFDLIIDNCMKYNARDTVFYRAAVRLR 103
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 112 GMHKVMNRLKSHEDAWPFCDPVD-EATA-PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQF 169
G+ K M K AWPF PVD EA +Y + IK PMD++ ++ KL+A Y+ +F
Sbjct: 29 GILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEF 88
Query: 170 RADFQLIVDNCRKYNGLDNEYTDMVRRLQQIF 201
AD +L+ NC KYN D+E M R+LQ +F
Sbjct: 89 GADVRLMFSNCYKYNPPDHEVVAMARKLQDVF 120
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 112 GMHKVMNRLKSHEDAWPFCDPVD-EATA-PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQF 169
G+ K M K AWPF PVD EA +Y + IK PMD++ ++ KL+A Y+ +F
Sbjct: 27 GILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEF 86
Query: 170 RADFQLIVDNCRKYNGLDNEYTDMVRRLQQIF 201
AD +L+ NC KYN D+E M R+LQ +F
Sbjct: 87 GADVRLMFSNCYKYNPPDHEVVAMARKLQDVF 118
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 112 GMHKVMNRLKSHEDAWPFCDPVD-EATA-PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQF 169
G+ K M K AWPF PVD EA +Y + IK PMD++ ++ KL+A Y+ +F
Sbjct: 8 GILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEF 67
Query: 170 RADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSRYL 209
AD +L+ NC KYN D+E M R+LQ +F ++ L
Sbjct: 68 GADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKML 107
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
Complex With Histone H4k5ac Peptide
Length = 121
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 111 IGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFR 170
I + K + +L+ + F +PV + P+Y + IK+PMD M++ L+A RY F F
Sbjct: 10 ILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFE 69
Query: 171 ADFQLIVDNCRKYNGLDNEYTDMVRRLQQ 199
DF LIV NC KYN D + RL++
Sbjct: 70 EDFNLIVSNCLKYNAKDTIFYRAAVRLRE 98
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 112 GMHKVMNRLKSHEDAWPFCDPVD-EATA-PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQF 169
G+ K M K AWPF PVD EA +Y + IK PMD++ ++ KL++ Y+ +F
Sbjct: 16 GILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEF 75
Query: 170 RADFQLIVDNCRKYNGLDNEYTDMVRRLQQIF 201
AD +L+ NC KYN D+E M R+LQ +F
Sbjct: 76 GADVRLMFSNCYKYNPPDHEVVAMARKLQDVF 107
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 113
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 126 AWPFCDPVDEATAP--NYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKY 183
AWPF PVD +Y++ IK PMDL+ ++ K+D Y F AD +L+ NC KY
Sbjct: 28 AWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKY 87
Query: 184 NGLDNEYTDMVRRLQQIF 201
N D+E M R+LQ +F
Sbjct: 88 NPPDHEVVAMARKLQDVF 105
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
Bromodomain-Containing Protein 3
Length = 117
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 126 AWPFCDPVDEATAP--NYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKY 183
AWPF PVD +Y++ IK PMDL+ ++ K+D Y F AD +L+ NC KY
Sbjct: 33 AWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKY 92
Query: 184 NGLDNEYTDMVRRLQQIF 201
N D+E M R+LQ +F
Sbjct: 93 NPPDHEVVAMARKLQDVF 110
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
In Complex With The Inhibitor Jq1
Length = 114
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 126 AWPFCDPVDEATAP--NYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKY 183
AWPF PVD + +Y++ IK PMDL+ ++ K++ Y+ +F AD +L+ NC KY
Sbjct: 28 AWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKY 87
Query: 184 NGLDNEYTDMVRRLQQIF 201
N D++ M R+LQ +F
Sbjct: 88 NPPDHDVVAMARKLQDVF 105
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 126 AWPFCDPVDEATAP--NYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKY 183
AWPF PVD + +Y++ IK PMDL+ ++ K++ Y+ +F AD +L+ NC KY
Sbjct: 26 AWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKY 85
Query: 184 NGLDNEYTDMVRRLQQIF 201
N D++ M R+LQ +F
Sbjct: 86 NPPDHDVVAMARKLQDVF 103
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 126 AWPFCDPVDEATAP--NYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKY 183
AWPF PVD + +Y++ IK PMDL+ ++ K++ Y+ +F AD +L+ NC KY
Sbjct: 22 AWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKY 81
Query: 184 NGLDNEYTDMVRRLQQIF 201
N D++ M R+LQ +F
Sbjct: 82 NPPDHDVVAMARKLQDVF 99
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%)
Query: 116 VMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQL 175
V ++ + D+WPF PV++ P+YY+ I P+DL + + + +Y++ F D L
Sbjct: 35 VTQKMMAVPDSWPFHHPVNKKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESFLDDVNL 94
Query: 176 IVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSRY 208
I+ N KYNG +++YT + + I ++ Y
Sbjct: 95 ILANSVKYNGPESQYTKTAQEIVNICYQTITEY 127
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%)
Query: 116 VMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQL 175
V ++ + D+WPF PV++ P+YY+ I PMDL + + + +Y++ F D L
Sbjct: 178 VTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 237
Query: 176 IVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSRY 208
I+ N KYNG +++YT + + + ++ Y
Sbjct: 238 ILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY 270
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 113 MHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRAD 172
+ ++N ++ + +PF PV+ +YY+ I RPMDL + E + Y + +FR
Sbjct: 52 LESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREH 111
Query: 173 FQLIVDNCRKYNG 185
+LIV N YNG
Sbjct: 112 LELIVKNSATYNG 124
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%)
Query: 116 VMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQL 175
V ++ + D+WPF PV++ P+YY+ I PMDL + + + +Y++ F D L
Sbjct: 157 VTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 216
Query: 176 IVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSRY 208
I+ N KYNG +++YT + + + ++ Y
Sbjct: 217 ILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY 249
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 113 MHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRAD 172
+ ++N ++ + +PF PV+ +YY+ I RPMDL + E + Y + +FR
Sbjct: 31 LESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREH 90
Query: 173 FQLIVDNCRKYNG 185
+LIV N YNG
Sbjct: 91 LELIVKNSATYNG 103
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
pdb|3HME|B Chain B, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
Length = 123
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 129 FCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDN 188
F PV +A AP Y IK PMD M++K+ A YK+ +F+ADF+L+ DN YN D
Sbjct: 34 FAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDT 93
Query: 189 EYTDMVRRL 197
Y + +++
Sbjct: 94 VYYKLAKKI 102
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%)
Query: 116 VMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQL 175
V ++ + D+WPF PV++ P+YY+ I PMDL + + + +Y++ F D L
Sbjct: 145 VTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 204
Query: 176 IVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSRY 208
I+ N KYNG +++YT + + + ++ Y
Sbjct: 205 ILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY 237
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 113 MHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRAD 172
+ ++N ++ + +PF PV+ +YY+ I RPMDL + E + Y + +FR
Sbjct: 19 LESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREH 78
Query: 173 FQLIVDNCRKYNG 185
+LIV N YNG
Sbjct: 79 LELIVKNSATYNG 91
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%)
Query: 116 VMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQL 175
V ++ + D+WPF PV++ P+YY+ I PMDL + + + +Y++ F D L
Sbjct: 38 VTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 97
Query: 176 IVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSRY 208
I+ N KYNG +++YT + + + ++ Y
Sbjct: 98 ILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY 130
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 113 MHKV-MNRLKSHEDAWPFCDPVDEATA--PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQF 169
+HKV M L H+ AWPF PVD P+Y++ IK+PMD+ ++ +L+ Y +
Sbjct: 36 LHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASEC 95
Query: 170 RADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVS 206
DF + NC YN ++ M + L++IF V+
Sbjct: 96 MQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVA 132
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 113 MHKV-MNRLKSHEDAWPFCDPVDEATA--PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQF 169
+HKV M L H+ AWPF PVD P+Y++ IK+PMD+ ++ +L+ Y +
Sbjct: 36 LHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASEC 95
Query: 170 RADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVS 206
DF + NC YN ++ M + L++IF V+
Sbjct: 96 MQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVA 132
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 116 VMNRLKSHEDAWPFCDPVD--EATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADF 173
V+ L H+ AWPF PVD + P+Y++ IK PMD+ ++++L+ Y + + DF
Sbjct: 27 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDF 86
Query: 174 QLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSR 207
+ NC YN ++ M + L++IF V++
Sbjct: 87 NTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQ 120
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 109 LRIGMHKVMNRLKSHEDAWPFCDPVD--EATAPNYYEQIKRPMDLTRMEEKLDAGRYKTF 166
L+ + V+ L H+ AWPF PVD + P+Y++ IK PMD+ ++++L+ Y +
Sbjct: 18 LQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSA 77
Query: 167 GQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSR 207
+ DF + NC YN ++ M + L++IF V++
Sbjct: 78 SECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQ 118
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 116 VMNRLKSHEDAWPFCDPVD--EATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADF 173
V+ L H+ AWPF PVD + P+Y++ IK PMD+ ++++L+ Y + + DF
Sbjct: 29 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDF 88
Query: 174 QLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSR 207
+ NC YN ++ M + L++IF V++
Sbjct: 89 NTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQ 122
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4
Length = 114
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 126 AWPFCDPVD-EATA-PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKY 183
AWPF PVD EA +Y + IK P D + ++ KL++ Y+ +F AD +L NC KY
Sbjct: 28 AWPFYKPVDVEALGLHDYCDIIKHPXDXSTIKSKLESREYRDAQEFGADVRLXFSNCYKY 87
Query: 184 NGLDNEYTDMVRRLQQIF 201
N D+E R+LQ +F
Sbjct: 88 NPPDHEVVAXARKLQDVF 105
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 116 VMNRLKSHEDAWPFCDPVDEATA--PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADF 173
V+ L H +WPF PVD P+YY IK PMDL ++++L+ Y+ + DF
Sbjct: 22 VLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIEDF 81
Query: 174 QLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSR 207
+ NC YN ++ M + L+++F +S+
Sbjct: 82 NTMFSNCYLYNKTGDDIVVMAQALEKLFMQKLSQ 115
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 120 LKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKL--DAGRYKTFGQFRADFQLIV 177
L HE + F DPV T P+YY+ IK PMDL+ ++++L D Y F ADF+LI
Sbjct: 32 LYCHEMSLAFQDPV-PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIF 90
Query: 178 DNCRKYNGLDNEYTDMVRRLQQIFRDAV 205
NC ++N D+E + +L+ F + +
Sbjct: 91 QNCAEFNEPDSEVANAGIKLENYFEELL 118
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 120 LKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKL--DAGRYKTFGQFRADFQLIV 177
L HE + F DPV T P+YY+ IK PMDL+ ++++L D Y F ADF+LI
Sbjct: 93 LYCHEMSLAFQDPV-PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIF 151
Query: 178 DNCRKYNGLDNEYTDMVRRLQQIFRDAV 205
NC ++N D+E + +L+ F + +
Sbjct: 152 QNCAEFNEPDSEVANAGIKLENYFEELL 179
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 109 LRIGMHKVMNRLKSHEDAWPFCDPVDEA--TAPNYYEQIKRPMDLTRMEEKLDAGRYKTF 166
L+ + V+ L H+ AWPF PVD P+YY+ IK PMD+ ++++L+ Y
Sbjct: 26 LQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNA 85
Query: 167 GQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVS 206
+ DF + NC YN ++ M L+++F ++
Sbjct: 86 QECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKIN 125
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 109 LRIGMHKVMNRLKSHEDAWPFCDPVDEA--TAPNYYEQIKRPMDLTRMEEKLDAGRYKTF 166
L+ + V+ L H+ AWPF PVD P+YY+ IK PMD+ ++++L+ Y
Sbjct: 22 LQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNA 81
Query: 167 GQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVS 206
+ DF + NC YN ++ M L+++F ++
Sbjct: 82 QECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKIN 121
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 109 LRIGMHKVMNRLKSHEDAWPFCDPVDEA--TAPNYYEQIKRPMDLTRMEEKLDAGRYKTF 166
L+ + V+ L H+ AWPF PVD P+YY+ IK PMD+ ++++L+ Y
Sbjct: 42 LQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNA 101
Query: 167 GQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVS 206
+ DF + NC YN ++ M L+++F ++
Sbjct: 102 QECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKIN 141
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 109 LRIGMHKVMNRLKSHEDAWPFCDPVDEA--TAPNYYEQIKRPMDLTRMEEKLDAGRYKTF 166
L+ + V+ L H+ AWPF PVD P+YY+ IK PMD+ ++++L+ Y
Sbjct: 22 LQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNA 81
Query: 167 GQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVS 206
+ DF + NC YN ++ M L+++F ++
Sbjct: 82 QECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKIN 121
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 116 VMNRLKSHEDAWPFCDPVDEATA--PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADF 173
V+ L H +WPF PVD P+YY IK PMDL ++++L+ Y + DF
Sbjct: 21 VLKDLWKHSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIEDF 80
Query: 174 QLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSR 207
+ NC YN ++ M + L+++F +S+
Sbjct: 81 NTMFSNCYLYNKPGDDIVLMAQALEKLFMQKLSQ 114
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 113 MHKVMNR-LKSHEDAWPFCDPVDEATA--PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQF 169
+HKV+ + L H+ AWPF PVD P+Y++ IK+P D ++ +L+ Y +
Sbjct: 16 LHKVVXKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASEC 75
Query: 170 RADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVS 206
DF NC YN ++ + L++IF V+
Sbjct: 76 XQDFNTXFTNCYIYNKPTDDIVLXAQTLEKIFLQKVA 112
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 113 MHKVMNR-LKSHEDAWPFCDPVDEATA--PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQF 169
+HKV+ + L H+ AWPF PVD P+Y++ IK+P D ++ +L+ Y +
Sbjct: 10 LHKVVXKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASEC 69
Query: 170 RADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVS 206
DF NC YN ++ + L++IF V+
Sbjct: 70 XQDFNTXFTNCYIYNKPTDDIVLXAQTLEKIFLQKVA 106
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 115 KVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQ 174
+++N + ED+ PF PVD P+Y + I PMD + E LDAG Y + +F D +
Sbjct: 17 ELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIR 76
Query: 175 LIVDNCRKY--NGLDNEYTDMVRRLQQIFRDAVSR 207
LI N + Y N Y+ M RL +F + + +
Sbjct: 77 LIFSNAKAYTPNKRSKIYS-MTLRLSALFEEKMKK 110
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2
Length = 130
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%)
Query: 105 TEEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYK 164
T +LRI + V +RL + F PVD P+Y IK+PMDL+ + K+D +Y
Sbjct: 7 TFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYL 66
Query: 165 TFGQFRADFQLIVDNCRKYN 184
T + D LI N +YN
Sbjct: 67 TVKDYLRDIDLICSNALEYN 86
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 107 EDLRIGMHKVMNRL-KSHEDAWPFCDPVDEAT--APNYYEQIKRPMDLTRMEEKLDAGRY 163
E+LR + + L + ++ PF PVD P+Y++ +K PMDL+ ++ KLD G+Y
Sbjct: 15 EELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQY 74
Query: 164 KTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAV 205
+ Q+ D L+ +N YN + +L ++F +
Sbjct: 75 QEPWQYVDDIWLMFNNAWLYNRKTSRVYKYCSKLSEVFEQEI 116
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 107 EDLRIGMHKVMNRL-KSHEDAWPFCDPVDEAT--APNYYEQIKRPMDLTRMEEKLDAGRY 163
E+LR + + L + ++ PF PVD P+Y++ +K PMDL+ ++ KLD G+Y
Sbjct: 10 EELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQY 69
Query: 164 KTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAV 205
+ Q+ D L+ +N YN + +L ++F +
Sbjct: 70 QEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEI 111
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 107 EDLRIGMHKVMNRL-KSHEDAWPFCDPVDEAT--APNYYEQIKRPMDLTRMEEKLDAGRY 163
E+LR + + L + ++ PF PVD P+Y++ +K PMDL+ ++ KLD G+Y
Sbjct: 12 EELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQY 71
Query: 164 KTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAV 205
+ Q+ D L+ +N YN + +L ++F +
Sbjct: 72 QEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEI 113
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 115 KVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLD---AGRYKTFGQFRA 171
+++ L HE + F +PV A+ PNYY+ IK+PMDL+ +++KL + Y+ F A
Sbjct: 88 RLLLYLYCHELSIEFQEPV-PASIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVA 146
Query: 172 DFQLIVDNCRKYNGL 186
D +LI NC ++N +
Sbjct: 147 DVRLIFKNCERFNEM 161
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7
Protein
Length = 117
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%)
Query: 109 LRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQ 168
L+ ++++M +L+ + + F PV + AP Y IK PMD + M+EK+ Y++ +
Sbjct: 9 LQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEE 68
Query: 169 FRADFQLIVDNCRKYNGLDNEYTDMVRRL 197
+ +F+L+ N YN + Y ++L
Sbjct: 69 LKDNFKLMCTNAMIYNKPETIYYKAAKKL 97
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|B Chain B, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|C Chain C, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|D Chain D, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
Length = 136
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%)
Query: 104 STEEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRY 163
+T +LR+ + V RL + + F PVD +Y E IK PMDL+ + K+D Y
Sbjct: 8 NTLRELRLFLRDVTKRLATDKRFNIFSKPVDIEEVSDYLEVIKEPMDLSTVITKIDKHNY 67
Query: 164 KTFGQFRADFQLIVDNCRKYN 184
T F D LI N +YN
Sbjct: 68 LTAKDFLKDIDLICSNALEYN 88
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 115 KVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQ 174
+++N + ED+ PF PVD P+Y + I PMD + E L+AG Y++ + D +
Sbjct: 28 ELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVR 87
Query: 175 LIVDNCRKYN-GLDNEYTDMVRRLQQIFRDAVSRYL 209
LI N + Y + M RL F + +S L
Sbjct: 88 LIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVL 123
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 126 AWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNG 185
A PF + P+YY+QIK P+ L ++ KL Y+T D L+ +N ++YN
Sbjct: 41 AEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNV 100
Query: 186 LDNEYTDMVRRLQQIFR 202
++ V +LQQ+ +
Sbjct: 101 PNSAIYKRVLKLQQVMQ 117
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein
Kiaa1240
Length = 131
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 98 STGGYRSTEEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEK 157
S+G +T +LR+ + V RL + + F PV + Y E IK PMDL+ + K
Sbjct: 2 SSGSSGNTLRELRLFLRDVTKRLATDKRFNIFSKPVSD-----YLEVIKEPMDLSTVITK 56
Query: 158 LDAGRYKTFGQFRADFQLIVDNCRKYN 184
+D Y T F D LI N +YN
Sbjct: 57 IDKHNYLTAKDFLKDIDLICSNALEYN 83
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 114 HKVMNRLKSHEDAWPFCDPVD--EATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRA 171
++++ L +E F VD + P+YY+ IK P + ++ KL G+Y +F
Sbjct: 27 NQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQYAYPSEFVK 86
Query: 172 DFQLIVDNCRKYN 184
D QLI DNC YN
Sbjct: 87 DVQLIFDNCSLYN 99
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF
Related Matrix Associated Actin Dependent Regulator Of
Cromatin Subfamily A Member 2
Length = 123
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 139 PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQ 198
P YYE I++P+D +++E++ +Y++ G D L+ N + +N ++ + LQ
Sbjct: 50 PEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQ 109
Query: 199 QIFRDA 204
+F+ A
Sbjct: 110 SVFKSA 115
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 126 AWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNG 185
A P + + +YYE+I P+DL +E+++ G YKT F AD + N KY G
Sbjct: 33 AAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYG 92
Query: 186 LDNEYTDMVRRLQQIFRDA 204
+ V RL++ + +A
Sbjct: 93 RKSPVGRDVCRLRKAYYNA 111
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 139 PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKY 183
P+YYE + +P+DL ++++KL Y ADFQL+ +N + Y
Sbjct: 42 PDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSY 86
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 139 PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQ 198
P+YY IK P+DL + +++ G YK+ D L+ N + YN +
Sbjct: 46 PDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGS---------- 95
Query: 199 QIFRDAVS 206
Q+F+DA S
Sbjct: 96 QVFKDANS 103
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 128 PFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYN 184
PF + VD+ P YYE + PM L+ +++ L+ G+Y F D L+ N +N
Sbjct: 218 PFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFN 274
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 139 PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLD 187
P YY +I++PM + ++ + D F D +L+ NC+ YN D
Sbjct: 96 PQYYYKIQQPMSINEIKSR-DYEYEDGPSNFLLDVELLTKNCQAYNEYD 143
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 128 PFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYN 184
PF + VD+ P YYE + PM L+ +++ L+ G+Y F D L+ N +N
Sbjct: 233 PFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFN 289
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 139 PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLD 187
P YY +I++PM + ++ + D F D +L+ NC+ YN D
Sbjct: 111 PQYYYKIQQPMSINEIKSR-DYEYEDGPSNFLLDVELLTKNCQAYNEYD 158
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 139 PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQ 198
P+YY IK P+DL + +++ G YK+ D L+ N + YN +
Sbjct: 45 PDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGS---------- 94
Query: 199 QIFRDAVS 206
Q+F+DA S
Sbjct: 95 QVFKDANS 102
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 139 PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQ 198
P+YY IK P+DL + +++ G YK+ D L+ N + YN +
Sbjct: 43 PDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGS---------- 92
Query: 199 QIFRDAVS 206
Q+F+DA S
Sbjct: 93 QVFKDANS 100
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 128 PFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYN 184
PF + VD+ P YYE + P L+ +++ L+ G+Y F D L+ N +N
Sbjct: 177 PFXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFN 233
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 139 PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLD 187
P YY +I++P + ++ + D F D +L+ NC+ YN D
Sbjct: 55 PQYYYKIQQPXSINEIKSR-DYEYEDGPSNFLLDVELLTKNCQAYNEYD 102
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 139 PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYN 184
P YYE I++P+D +++E++ +Y++ D L+ N + +N
Sbjct: 49 PEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN 94
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 128 PFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYN 184
PF + VD+ P YYE + P L+ +++ L+ G+Y F D L+ N +N
Sbjct: 183 PFXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFN 239
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 139 PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLD 187
P YY +I++P + ++ + D F D +L+ NC+ YN D
Sbjct: 61 PQYYYKIQQPXSINEIKSR-DYEYEDGPSNFLLDVELLTKNCQAYNEYD 108
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 139 PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYN 184
P YYE I++P+D +++E++ +Y++ D L+ N + +N
Sbjct: 50 PEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN 95
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 139 PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYN 184
P YYE I++P+D +++E++ +Y++ D L+ N + +N
Sbjct: 45 PEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN 90
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 139 PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYN 184
P+YY IK+PMD+ ++ + A +Y+ DF ++ +N YN
Sbjct: 52 PDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYN 97
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 139 PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYN 184
P+YY IK+PMD+ ++ + A +Y+ DF ++ +N YN
Sbjct: 52 PDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYN 97
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 139 PNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYN 184
P+YY+ I PMDL +E + +Y D +L+ N R YN
Sbjct: 62 PDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYN 107
>pdb|3IU6|A Chain A, Crystal Structure Of The Sixth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 147
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 113 MHKVMNRLKSHED--AWPFCDPVDE--ATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQ 168
+H + + SH+D + D + E A PN+ K P+ + + ++ RY+
Sbjct: 12 IHNLFVSVMSHQDDEGRXYSDSLAEIPAVDPNFPN--KPPLTFDIIRKNVENNRYRRLDL 69
Query: 169 FRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIF 201
F+ +++ R+ N D+E + LQQ F
Sbjct: 70 FQEHMFEVLERARRMNRTDSEIYEDAVELQQFF 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,888,269
Number of Sequences: 62578
Number of extensions: 188199
Number of successful extensions: 438
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 84
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)