Query psy16435
Match_columns 277
No_of_seqs 337 out of 1397
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 21:13:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05496 Bromo_WDR9_II Bromodom 100.0 1.2E-29 2.5E-34 202.5 12.8 107 106-212 3-110 (119)
2 cd05495 Bromo_cbp_like Bromodo 100.0 2E-29 4.3E-34 198.3 13.0 103 107-209 2-107 (108)
3 cd05497 Bromo_Brdt_I_like Brom 100.0 2.9E-29 6.2E-34 197.1 12.5 102 107-208 4-107 (107)
4 cd05505 Bromo_WSTF_like Bromod 100.0 4.4E-29 9.6E-34 192.6 11.2 94 111-204 3-96 (97)
5 cd05510 Bromo_SPT7_like Bromod 100.0 1.4E-28 2.9E-33 194.6 12.8 106 105-210 4-111 (112)
6 cd05508 Bromo_RACK7 Bromodomai 100.0 9.9E-29 2.2E-33 191.2 11.6 97 107-204 2-98 (99)
7 cd05507 Bromo_brd8_like Bromod 100.0 1.7E-28 3.7E-33 191.9 12.2 101 108-208 3-103 (104)
8 cd05504 Bromo_Acf1_like Bromod 100.0 5.5E-28 1.2E-32 192.1 13.2 102 107-208 11-112 (115)
9 cd05503 Bromo_BAZ2A_B_like Bro 100.0 3.2E-28 6.8E-33 188.1 11.1 95 111-205 3-97 (97)
10 cd05509 Bromo_gcn5_like Bromod 100.0 4.4E-28 9.4E-33 188.6 11.5 100 109-208 2-101 (101)
11 cd05502 Bromo_tif1_like Bromod 100.0 1.7E-27 3.7E-32 187.8 13.2 103 108-211 4-109 (109)
12 cd05516 Bromo_SNF2L2 Bromodoma 99.9 7.9E-28 1.7E-32 189.0 10.7 99 109-207 2-106 (107)
13 cd05513 Bromo_brd7_like Bromod 99.9 1E-27 2.2E-32 185.3 10.8 95 108-202 1-95 (98)
14 cd05512 Bromo_brd1_like Bromod 99.9 1.1E-27 2.4E-32 185.2 10.8 94 108-201 1-94 (98)
15 cd05528 Bromo_AAA Bromodomain; 99.9 2.6E-27 5.7E-32 187.3 12.4 105 107-211 2-110 (112)
16 cd05511 Bromo_TFIID Bromodomai 99.9 3.3E-27 7E-32 186.9 11.5 102 110-211 2-103 (112)
17 cd05506 Bromo_plant1 Bromodoma 99.9 4E-27 8.6E-32 182.5 11.1 96 110-205 2-99 (99)
18 cd05501 Bromo_SP100C_like Brom 99.9 9.4E-27 2E-31 180.4 12.8 97 111-210 5-101 (102)
19 cd05499 Bromo_BDF1_2_II Bromod 99.9 8.5E-27 1.8E-31 181.7 11.2 95 111-205 3-102 (102)
20 cd05500 Bromo_BDF1_2_I Bromodo 99.9 1.4E-26 3.1E-31 180.7 12.1 97 108-204 4-102 (103)
21 cd05498 Bromo_Brdt_II_like Bro 99.9 2.3E-26 5E-31 179.2 11.4 96 110-205 2-102 (102)
22 cd05524 Bromo_polybromo_I Brom 99.9 2.9E-26 6.2E-31 181.8 11.5 102 110-211 4-111 (113)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 2E-26 4.2E-31 179.9 10.4 96 109-204 1-102 (103)
24 cd05515 Bromo_polybromo_V Brom 99.9 2.2E-26 4.7E-31 180.3 10.3 96 110-205 2-103 (105)
25 KOG1474|consensus 99.9 2.5E-26 5.4E-31 229.4 12.0 109 106-214 220-330 (640)
26 cd05517 Bromo_polybromo_II Bro 99.9 2.8E-26 6.1E-31 178.9 9.6 94 110-203 2-101 (103)
27 cd05525 Bromo_ASH1 Bromodomain 99.9 5.2E-26 1.1E-30 178.2 10.9 96 109-204 3-104 (106)
28 cd05520 Bromo_polybromo_III Br 99.9 5.8E-26 1.2E-30 177.2 10.3 81 124-204 22-102 (103)
29 cd05518 Bromo_polybromo_IV Bro 99.9 9.3E-26 2E-30 175.9 10.1 83 122-204 20-102 (103)
30 cd05529 Bromo_WDR9_I_like Brom 99.9 3.4E-25 7.3E-30 179.3 12.6 103 104-206 20-126 (128)
31 smart00297 BROMO bromo domain. 99.9 4.3E-25 9.3E-30 172.7 12.3 102 106-207 5-106 (107)
32 KOG0955|consensus 99.9 2.4E-25 5.2E-30 227.6 9.1 187 1-208 470-665 (1051)
33 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 2.4E-24 5.1E-29 168.8 11.2 95 109-205 2-102 (106)
34 cd05522 Bromo_Rsc1_2_II Bromod 99.9 2.1E-24 4.6E-29 168.7 10.3 95 110-204 3-103 (104)
35 PF00439 Bromodomain: Bromodom 99.9 1.2E-23 2.6E-28 157.5 9.4 84 113-196 1-84 (84)
36 cd04369 Bromodomain Bromodomai 99.9 3.9E-23 8.5E-28 157.6 10.1 95 110-204 2-98 (99)
37 cd05492 Bromo_ZMYND11 Bromodom 99.9 1.9E-22 4E-27 158.4 11.6 97 112-208 4-106 (109)
38 cd05526 Bromo_polybromo_VI Bro 99.9 1.5E-21 3.3E-26 152.9 10.6 100 108-209 3-108 (110)
39 COG5076 Transcription factor i 99.8 2.2E-19 4.8E-24 169.6 9.4 89 124-212 164-252 (371)
40 KOG1245|consensus 99.8 3.3E-19 7.2E-24 188.9 8.3 97 113-210 1306-1402(1404)
41 KOG1472|consensus 99.6 2.6E-16 5.6E-21 156.1 6.3 103 108-210 606-708 (720)
42 cd05494 Bromodomain_1 Bromodom 99.3 1.2E-12 2.6E-17 103.8 5.0 76 110-185 5-89 (114)
43 KOG1827|consensus 99.2 1.2E-11 2.5E-16 121.6 7.5 101 107-207 51-157 (629)
44 cd05491 Bromo_TBP7_like Bromod 99.2 1.6E-11 3.5E-16 96.8 4.6 42 147-188 63-104 (119)
45 KOG0008|consensus 99.2 3.2E-11 6.9E-16 124.8 6.2 99 111-209 1385-1483(1563)
46 KOG0386|consensus 99.1 8.7E-11 1.9E-15 119.2 7.9 100 111-210 1027-1132(1157)
47 KOG0008|consensus 99.0 8.7E-10 1.9E-14 114.4 7.1 99 108-206 1261-1359(1563)
48 KOG1472|consensus 98.9 1.8E-09 4E-14 107.8 6.2 82 105-193 290-371 (720)
49 KOG1828|consensus 98.8 1.2E-09 2.5E-14 101.2 0.1 99 108-206 19-117 (418)
50 KOG1828|consensus 98.7 1.5E-08 3.3E-13 93.9 3.4 89 110-199 210-298 (418)
51 KOG1474|consensus 98.5 3E-08 6.4E-13 99.9 0.8 92 120-211 4-97 (640)
52 COG5076 Transcription factor i 97.5 3.7E-05 8E-10 72.9 0.8 93 115-207 270-362 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 96.8 0.003 6.6E-08 51.1 5.8 66 148-213 59-124 (131)
54 KOG0644|consensus 95.9 0.0053 1.2E-07 62.6 2.8 61 145-205 1050-1110(1113)
55 KOG0732|consensus 92.1 0.17 3.6E-06 53.7 4.3 63 125-187 532-601 (1080)
56 COG5141 PHD zinc finger-contai 91.6 0.064 1.4E-06 52.0 0.6 21 2-22 440-460 (669)
57 KOG1827|consensus 87.2 0.062 1.4E-06 53.9 -3.2 77 126-202 213-289 (629)
58 KOG0644|consensus 78.2 0.89 1.9E-05 47.1 0.8 70 129-199 86-185 (1113)
59 PF09026 CENP-B_dimeris: Centr 69.3 1.5 3.3E-05 33.5 0.0 8 268-275 35-42 (101)
60 PF14812 PBP1_TM: Transmembran 68.8 1.6 3.5E-05 32.4 0.0 11 267-277 46-56 (81)
61 TIGR02606 antidote_CC2985 puta 56.4 22 0.00048 25.4 4.1 27 152-178 12-38 (69)
62 PF14372 DUF4413: Domain of un 54.4 53 0.0011 25.0 6.2 49 160-208 3-51 (101)
63 KOG4032|consensus 53.1 59 0.0013 27.9 6.7 23 184-206 81-103 (184)
64 KOG0954|consensus 40.3 17 0.00036 37.6 1.8 64 3-76 505-572 (893)
65 PF03693 RHH_2: Uncharacterise 40.3 42 0.00092 24.7 3.5 27 152-178 15-41 (80)
66 KOG0732|consensus 28.2 17 0.00037 39.1 -0.4 59 130-188 790-850 (1080)
67 KOG0772|consensus 27.0 58 0.0013 32.5 3.0 18 256-273 133-150 (641)
68 PF09866 DUF2093: Uncharacteri 24.5 22 0.00048 23.0 -0.2 11 4-14 21-31 (42)
No 1
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.2e-29 Score=202.53 Aligned_cols=107 Identities=29% Similarity=0.479 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcC
Q psy16435 106 EEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNG 185 (277)
Q Consensus 106 ~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~ 185 (277)
...|+..|..||+.|+.++.+++|..||++..+||||++|++||||+||+.||.+|.|.++.+|.+||+|||.||++||+
T Consensus 3 ~~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~ 82 (119)
T cd05496 3 ESDWKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTP 82 (119)
T ss_pred HHHHHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHHhhccc
Q psy16435 186 L-DNEYTDMVRRLQQIFRDAVSRYLDGE 212 (277)
Q Consensus 186 ~-~s~i~~~A~~L~~~f~~~~~~~~~~~ 212 (277)
+ +|.||.+|..|+++|+..+.+++...
T Consensus 83 ~~~s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 83 NKRSRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 89999999999999999999997653
No 2
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=2e-29 Score=198.35 Aligned_cols=103 Identities=29% Similarity=0.585 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCCCCCC--CCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy16435 107 EDLRIGMHKVMNRLKSH-EDAWPFCDPVDEA--TAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKY 183 (277)
Q Consensus 107 ~~l~~~l~~il~~l~~~-~~s~~F~~pv~~~--~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~Y 183 (277)
++|+..|..+++.|..+ +.|++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||.|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999 9999999999987 69999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy16435 184 NGLDNEYTDMVRRLQQIFRDAVSRYL 209 (277)
Q Consensus 184 N~~~s~i~~~A~~L~~~f~~~~~~~~ 209 (277)
|+++|.+|.+|..|++.|+..+..++
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998765
No 3
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=2.9e-29 Score=197.09 Aligned_cols=102 Identities=29% Similarity=0.565 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCC--CCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy16435 107 EDLRIGMHKVMNRLKSHEDAWPFCDPVDEA--TAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYN 184 (277)
Q Consensus 107 ~~l~~~l~~il~~l~~~~~s~~F~~pv~~~--~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN 184 (277)
.++...+..||..|+.++.|++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||.|||.||+.||
T Consensus 4 ~q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (107)
T cd05497 4 NQLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYN 83 (107)
T ss_pred HHHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 478888899999999999999999999986 699999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Q psy16435 185 GLDNEYTDMVRRLQQIFRDAVSRY 208 (277)
Q Consensus 185 ~~~s~i~~~A~~L~~~f~~~~~~~ 208 (277)
+++|.++.+|..|++.|.+.+.++
T Consensus 84 ~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 84 KPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999988753
No 4
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=4.4e-29 Score=192.63 Aligned_cols=94 Identities=26% Similarity=0.488 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHH
Q psy16435 111 IGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEY 190 (277)
Q Consensus 111 ~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~i 190 (277)
..|..||+.|+.++.+++|..||++..+||||++|++||||+||++||++|.|.|+.+|.+||.|||.||+.||+++|.+
T Consensus 3 ~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i 82 (97)
T cd05505 3 QKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSYV 82 (97)
T ss_pred HHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy16435 191 TDMVRRLQQIFRDA 204 (277)
Q Consensus 191 ~~~A~~L~~~f~~~ 204 (277)
+.+|..|++.|...
T Consensus 83 ~~~a~~le~~f~~~ 96 (97)
T cd05505 83 LSCMRKTEQCCVNL 96 (97)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
No 5
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.4e-28 Score=194.58 Aligned_cols=106 Identities=32% Similarity=0.496 Sum_probs=100.3
Q ss_pred ChHHHHHHHHHHHHHHHcC-CCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy16435 105 TEEDLRIGMHKVMNRLKSH-EDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKY 183 (277)
Q Consensus 105 ~~~~l~~~l~~il~~l~~~-~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~Y 183 (277)
.+++|...|..||..|+.+ +.+++|..||++..+||||++|++||||+||++||++|.|.|+.+|.+||.|||.||+.|
T Consensus 4 ~~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~y 83 (112)
T cd05510 4 GQEEFYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLY 83 (112)
T ss_pred cHHHHHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC-HHHHHHHHHHHHHHHHHHHhhc
Q psy16435 184 NGLDN-EYTDMVRRLQQIFRDAVSRYLD 210 (277)
Q Consensus 184 N~~~s-~i~~~A~~L~~~f~~~~~~~~~ 210 (277)
|+++| .++.+|..|++.|...+..+++
T Consensus 84 N~~~s~~~~~~A~~l~~~~~~~~~~~~~ 111 (112)
T cd05510 84 NSDPSHPLRRHANFMKKKAEHLLKLIPD 111 (112)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99876 6889999999999999988753
No 6
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=9.9e-29 Score=191.22 Aligned_cols=97 Identities=29% Similarity=0.487 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCC
Q psy16435 107 EDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGL 186 (277)
Q Consensus 107 ~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~ 186 (277)
.+|...|..++..|+ ++.+++|..||++..+||||.+|++||||+||++||.+|.|.++++|.+||.|||.||+.||++
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~ 80 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGG 80 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 478899999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy16435 187 DNEYTDMVRRLQQIFRDA 204 (277)
Q Consensus 187 ~s~i~~~A~~L~~~f~~~ 204 (277)
+|.++.+|..|.+.|...
T Consensus 81 ~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 81 DHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 999999999999988764
No 7
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.7e-28 Score=191.87 Aligned_cols=101 Identities=27% Similarity=0.439 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q psy16435 108 DLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLD 187 (277)
Q Consensus 108 ~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~ 187 (277)
.|+..|..+++.|..++.+++|..||+...+|+||++|++||||+||++||++|.|.++.+|.+||.|||.||+.||+++
T Consensus 3 ~~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 82 (104)
T cd05507 3 AWKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSD 82 (104)
T ss_pred HHHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q psy16435 188 NEYTDMVRRLQQIFRDAVSRY 208 (277)
Q Consensus 188 s~i~~~A~~L~~~f~~~~~~~ 208 (277)
|.++.+|..|+..|...+..+
T Consensus 83 s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 83 HDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999998887654
No 8
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=5.5e-28 Score=192.14 Aligned_cols=102 Identities=33% Similarity=0.624 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCC
Q psy16435 107 EDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGL 186 (277)
Q Consensus 107 ~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~ 186 (277)
......|..||..|+.++.+++|..||+...+||||++|++||||+||++||.+|.|.|+.+|.+||.|||.||++||++
T Consensus 11 ~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~ 90 (115)
T cd05504 11 PLNLSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPE 90 (115)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 35577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q psy16435 187 DNEYTDMVRRLQQIFRDAVSRY 208 (277)
Q Consensus 187 ~s~i~~~A~~L~~~f~~~~~~~ 208 (277)
+|.+|.+|..|+++|...++++
T Consensus 91 ~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 91 HTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999876
No 9
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=3.2e-28 Score=188.07 Aligned_cols=95 Identities=35% Similarity=0.740 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHH
Q psy16435 111 IGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEY 190 (277)
Q Consensus 111 ~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~i 190 (277)
..|..||+.|..++.+++|+.||++..+|+||.+|++||||+||++||.+|.|.|+.+|.+||.|||.||+.||+++|.+
T Consensus 3 ~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i 82 (97)
T cd05503 3 ALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEV 82 (97)
T ss_pred HHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy16435 191 TDMVRRLQQIFRDAV 205 (277)
Q Consensus 191 ~~~A~~L~~~f~~~~ 205 (277)
+.+|..|++.|+..|
T Consensus 83 ~~~a~~l~~~f~~~~ 97 (97)
T cd05503 83 GRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999864
No 10
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=4.4e-28 Score=188.57 Aligned_cols=100 Identities=48% Similarity=0.913 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCC
Q psy16435 109 LRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDN 188 (277)
Q Consensus 109 l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s 188 (277)
++..|..||+.|..++.+++|..||++..+|+||++|++||||+||++||.+|.|.|+.+|..||.|||.||+.||+++|
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s 81 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDT 81 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy16435 189 EYTDMVRRLQQIFRDAVSRY 208 (277)
Q Consensus 189 ~i~~~A~~L~~~f~~~~~~~ 208 (277)
.++.+|..|+..|++.++++
T Consensus 82 ~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 82 EYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999988764
No 11
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.7e-27 Score=187.78 Aligned_cols=103 Identities=32% Similarity=0.565 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhhhhhc
Q psy16435 108 DLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDA---GRYKTFGQFRADFQLIVDNCRKYN 184 (277)
Q Consensus 108 ~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~---~~Y~s~~~f~~Dv~lm~~Na~~YN 184 (277)
..+..|..||..|..++.+++|..||++ .+|+||++|++||||+||++||.+ |.|.++++|.+||+|||.||+.||
T Consensus 4 ~~~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN 82 (109)
T cd05502 4 IDQRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFN 82 (109)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4477899999999999999999999998 899999999999999999999998 699999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcc
Q psy16435 185 GLDNEYTDMVRRLQQIFRDAVSRYLDG 211 (277)
Q Consensus 185 ~~~s~i~~~A~~L~~~f~~~~~~~~~~ 211 (277)
+++|.++.+|..|++.|++.+.+++++
T Consensus 83 ~~~s~i~~~a~~l~~~f~~~~~~~~p~ 109 (109)
T cd05502 83 EEDSEVAQAGKELELFFEEQLKEILPD 109 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 999999999999999999999998763
No 12
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=7.9e-28 Score=188.98 Aligned_cols=99 Identities=23% Similarity=0.446 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhh
Q psy16435 109 LRIGMHKVMNRLKSHED------AWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRK 182 (277)
Q Consensus 109 l~~~l~~il~~l~~~~~------s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~ 182 (277)
|...|..||+.|..+.+ +++|..||+...+||||.+|++||||+||++||.+|.|.++.+|..||.|||.||+.
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQT 81 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 67889999999988877 899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHH
Q psy16435 183 YNGLDNEYTDMVRRLQQIFRDAVSR 207 (277)
Q Consensus 183 YN~~~s~i~~~A~~L~~~f~~~~~~ 207 (277)
||+++|.+|.+|..|+++|...+.+
T Consensus 82 yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 82 FNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998875
No 13
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1e-27 Score=185.26 Aligned_cols=95 Identities=29% Similarity=0.534 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q psy16435 108 DLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLD 187 (277)
Q Consensus 108 ~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~ 187 (277)
+|...|..||+.|+.++.+++|..||+...+||||++|++||||+||++||.++.|.|+.+|.+||.|||.||+.||+++
T Consensus 1 ~l~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 80 (98)
T cd05513 1 PLQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPD 80 (98)
T ss_pred CHHHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy16435 188 NEYTDMVRRLQQIFR 202 (277)
Q Consensus 188 s~i~~~A~~L~~~f~ 202 (277)
|.+|.+|..|...-.
T Consensus 81 s~~~~~A~~L~~~~~ 95 (98)
T cd05513 81 TIYYKAAKKLLHSGM 95 (98)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999976543
No 14
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.1e-27 Score=185.20 Aligned_cols=94 Identities=36% Similarity=0.690 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q psy16435 108 DLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLD 187 (277)
Q Consensus 108 ~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~ 187 (277)
+|...|+.+|+.|..++.+++|..||+...+|+||++|++||||+||++||.+|.|.|+++|..||+|||.||+.||+++
T Consensus 1 p~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 80 (98)
T cd05512 1 PLEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKD 80 (98)
T ss_pred CHHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy16435 188 NEYTDMVRRLQQIF 201 (277)
Q Consensus 188 s~i~~~A~~L~~~f 201 (277)
|.+|++|..|++.-
T Consensus 81 s~~~~~A~~l~~~~ 94 (98)
T cd05512 81 TIFYRAAVRLRDQG 94 (98)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998764
No 15
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.95 E-value=2.6e-27 Score=187.31 Aligned_cols=105 Identities=35% Similarity=0.524 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCC
Q psy16435 107 EDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGL 186 (277)
Q Consensus 107 ~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~ 186 (277)
.+|+..|..|++.|+.++.+++|..||+...+||||++|++||||+||++||++|.|.|+.+|.+||.|||.||+.||++
T Consensus 2 ~~lr~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~ 81 (112)
T cd05528 2 RELRLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPD 81 (112)
T ss_pred hHHHHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCC
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C----CHHHHHHHHHHHHHHHHHHHhhcc
Q psy16435 187 D----NEYTDMVRRLQQIFRDAVSRYLDG 211 (277)
Q Consensus 187 ~----s~i~~~A~~L~~~f~~~~~~~~~~ 211 (277)
+ |.++.+|..|++.|...+...++.
T Consensus 82 ~s~~~s~i~~~A~~L~~~~~~~~~~~~~~ 110 (112)
T cd05528 82 RDPADKLIRSRACELRDEVHAMIEAELDP 110 (112)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5 699999999999999999887653
No 16
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=3.3e-27 Score=186.92 Aligned_cols=102 Identities=33% Similarity=0.672 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCH
Q psy16435 110 RIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNE 189 (277)
Q Consensus 110 ~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~ 189 (277)
...+..|+..|+.++.+++|..||++..+|+||++|++||||+||++||.+|.|.|+++|.+||.|||.||+.||+++|.
T Consensus 2 ~~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 81 (112)
T cd05511 2 SFILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSV 81 (112)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q psy16435 190 YTDMVRRLQQIFRDAVSRYLDG 211 (277)
Q Consensus 190 i~~~A~~L~~~f~~~~~~~~~~ 211 (277)
++.+|..|...|...+..+...
T Consensus 82 i~~~A~~l~~~~~~~~~~~~~~ 103 (112)
T cd05511 82 YTKKAKEMLELAEELLAEREEK 103 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999988553
No 17
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=4e-27 Score=182.49 Aligned_cols=96 Identities=32% Similarity=0.593 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCC--CCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q psy16435 110 RIGMHKVMNRLKSHEDAWPFCDPVDEA--TAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLD 187 (277)
Q Consensus 110 ~~~l~~il~~l~~~~~s~~F~~pv~~~--~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~ 187 (277)
...|..||+.|+.++.+++|..||++. .+|+||.+|++||||+||+.||++|.|.|+.+|.+||.+||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 568999999999999999999999976 699999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy16435 188 NEYTDMVRRLQQIFRDAV 205 (277)
Q Consensus 188 s~i~~~A~~L~~~f~~~~ 205 (277)
|.++.+|..|...|+..|
T Consensus 82 s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 NDVHTMAKELLKIFETRW 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999864
No 18
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=9.4e-27 Score=180.36 Aligned_cols=97 Identities=20% Similarity=0.312 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHH
Q psy16435 111 IGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEY 190 (277)
Q Consensus 111 ~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~i 190 (277)
..|..||..|..++.|++|..++ ..+||||++|++||||+||++||.+|.|.|+++|.+||+|||.||++||+++ .+
T Consensus 5 ~~ce~il~~l~~~~~s~~f~~~p--~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~~ 81 (102)
T cd05501 5 LKCEFLLLKVYCMSKSGFFISKP--YYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-DF 81 (102)
T ss_pred HHHHHHHHHHHhCcccccccCCC--CCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-HH
Confidence 34999999999999999997643 4899999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q psy16435 191 TDMVRRLQQIFRDAVSRYLD 210 (277)
Q Consensus 191 ~~~A~~L~~~f~~~~~~~~~ 210 (277)
+.+|..|++.|++.+.+++.
T Consensus 82 ~~~a~~L~~~Fek~~~~~f~ 101 (102)
T cd05501 82 GQVGITLEKKFEKNFKEVFA 101 (102)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998764
No 19
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=8.5e-27 Score=181.66 Aligned_cols=95 Identities=35% Similarity=0.655 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHcC---CCCCCCCCCCCCC--CCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcC
Q psy16435 111 IGMHKVMNRLKSH---EDAWPFCDPVDEA--TAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNG 185 (277)
Q Consensus 111 ~~l~~il~~l~~~---~~s~~F~~pv~~~--~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~ 185 (277)
..|..||..|..+ +.+++|+.||++. .+|+||++|++||||++|++||.+|.|.|+.+|.+||+|||.||+.||+
T Consensus 3 ~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn~ 82 (102)
T cd05499 3 KFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFNP 82 (102)
T ss_pred HHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 5689999999884 5699999999998 8999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy16435 186 LDNEYTDMVRRLQQIFRDAV 205 (277)
Q Consensus 186 ~~s~i~~~A~~L~~~f~~~~ 205 (277)
++|.++.+|..|++.|+..|
T Consensus 83 ~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 83 EGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999864
No 20
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.4e-26 Score=180.70 Aligned_cols=97 Identities=38% Similarity=0.636 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCC--CCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcC
Q psy16435 108 DLRIGMHKVMNRLKSHEDAWPFCDPVDEA--TAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNG 185 (277)
Q Consensus 108 ~l~~~l~~il~~l~~~~~s~~F~~pv~~~--~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~ 185 (277)
.....|..||..|+.++.+++|..||++. .+|+||++|++||||++|+.||.+|.|.++.+|..||.|||.||+.||+
T Consensus 4 ~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 83 (103)
T cd05500 4 HQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNG 83 (103)
T ss_pred HHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45778999999999999999999999976 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy16435 186 LDNEYTDMVRRLQQIFRDA 204 (277)
Q Consensus 186 ~~s~i~~~A~~L~~~f~~~ 204 (277)
++|.++.+|..|++.|++.
T Consensus 84 ~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 84 PEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 21
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.3e-26 Score=179.19 Aligned_cols=96 Identities=38% Similarity=0.628 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCCCCCC--CCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy16435 110 RIGMHKVMNRLKSH---EDAWPFCDPVDEA--TAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYN 184 (277)
Q Consensus 110 ~~~l~~il~~l~~~---~~s~~F~~pv~~~--~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN 184 (277)
...|..||+.|+.+ +.+++|..||++. .+|+||++|++||||++|++||.+|.|.|+.+|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45799999999999 7899999999986 599999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy16435 185 GLDNEYTDMVRRLQQIFRDAV 205 (277)
Q Consensus 185 ~~~s~i~~~A~~L~~~f~~~~ 205 (277)
+++|.++.+|..|++.|++.|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999864
No 22
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.94 E-value=2.9e-26 Score=181.75 Aligned_cols=102 Identities=23% Similarity=0.456 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHcCCC------CCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy16435 110 RIGMHKVMNRLKSHED------AWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKY 183 (277)
Q Consensus 110 ~~~l~~il~~l~~~~~------s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~Y 183 (277)
...|..|++.|+.+.. +.+|..+|+...+|+||++|++||||+||++||.+|.|.|+.+|.+||.|||+||+.|
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 83 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAY 83 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5678999999986544 5689999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhcc
Q psy16435 184 NGLDNEYTDMVRRLQQIFRDAVSRYLDG 211 (277)
Q Consensus 184 N~~~s~i~~~A~~L~~~f~~~~~~~~~~ 211 (277)
|+++|.+|.+|..|+++|+..+.+++.+
T Consensus 84 N~~~s~~~~~A~~L~~~f~~~~~~~~~~ 111 (113)
T cd05524 84 YKPDSPEHKDACKLWELFLSARNEVLSG 111 (113)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999998765
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2e-26 Score=179.94 Aligned_cols=96 Identities=23% Similarity=0.466 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHcC------CCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhh
Q psy16435 109 LRIGMHKVMNRLKSH------EDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRK 182 (277)
Q Consensus 109 l~~~l~~il~~l~~~------~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~ 182 (277)
|+..|..|++.|..+ ..+++|..||+...+|+||++|++||||++|++||++|.|.|+.+|..||+|||.||+.
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 80 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANART 80 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 467889999999844 44889999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHH
Q psy16435 183 YNGLDNEYTDMVRRLQQIFRDA 204 (277)
Q Consensus 183 YN~~~s~i~~~A~~L~~~f~~~ 204 (277)
||+++|.+|.+|..|++.|..+
T Consensus 81 yn~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 81 YNQEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.94 E-value=2.2e-26 Score=180.26 Aligned_cols=96 Identities=24% Similarity=0.487 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy16435 110 RIGMHKVMNRLKSH------EDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKY 183 (277)
Q Consensus 110 ~~~l~~il~~l~~~------~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~Y 183 (277)
++.|..|++.|..+ ..+++|..||+...+||||++|++||||+||++||.++.|.|+++|..||.|||.||++|
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45677888888765 447899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q psy16435 184 NGLDNEYTDMVRRLQQIFRDAV 205 (277)
Q Consensus 184 N~~~s~i~~~A~~L~~~f~~~~ 205 (277)
|+++|.+|.+|..|+++|....
T Consensus 82 N~~~s~i~~~A~~L~~~~~~~~ 103 (105)
T cd05515 82 NEPDSQIYKDALTLQKVLLETK 103 (105)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 25
>KOG1474|consensus
Probab=99.93 E-value=2.5e-26 Score=229.42 Aligned_cols=109 Identities=34% Similarity=0.619 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC--CCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy16435 106 EEDLRIGMHKVMNRLKSHEDAWPFCDPVDEA--TAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKY 183 (277)
Q Consensus 106 ~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~--~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~Y 183 (277)
..++...|..||..|+.|..+|||..|||+. .+||||+||++||||+||+.||.+|.|.++.+|..||+|||.||++|
T Consensus 220 ~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~Y 299 (640)
T KOG1474|consen 220 TVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTY 299 (640)
T ss_pred cHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhc
Confidence 4566778999999999999999999999997 68999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhcccCC
Q psy16435 184 NGLDNEYTDMVRRLQQIFRDAVSRYLDGERS 214 (277)
Q Consensus 184 N~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 214 (277)
|++++.||.||..|+.+|+..|..++.....
T Consensus 300 Np~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~ 330 (640)
T KOG1474|consen 300 NPEGSDVYAMAKKLQEVFEERWASMPLEIEE 330 (640)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9999999999999999999999998766543
No 26
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=2.8e-26 Score=178.91 Aligned_cols=94 Identities=21% Similarity=0.467 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHcCCC------CCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy16435 110 RIGMHKVMNRLKSHED------AWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKY 183 (277)
Q Consensus 110 ~~~l~~il~~l~~~~~------s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~Y 183 (277)
++.|..|++.|..+.+ +++|..+|++..+||||++|++||||+||++||.++.|.++.+|..||.|||.||+.|
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTF 81 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5677888888877544 6899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q psy16435 184 NGLDNEYTDMVRRLQQIFRD 203 (277)
Q Consensus 184 N~~~s~i~~~A~~L~~~f~~ 203 (277)
|+++|.+|.+|..|+++|..
T Consensus 82 N~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 82 NEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999976
No 27
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=5.2e-26 Score=178.19 Aligned_cols=96 Identities=29% Similarity=0.513 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhh
Q psy16435 109 LRIGMHKVMNRLKSHED------AWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRK 182 (277)
Q Consensus 109 l~~~l~~il~~l~~~~~------s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~ 182 (277)
|...|..|++.|....+ +++|..+|++..+||||++|++||||++|++||.+|.|.|+.+|..||.|||.||+.
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~ 82 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEK 82 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 56778888888876544 689999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHH
Q psy16435 183 YNGLDNEYTDMVRRLQQIFRDA 204 (277)
Q Consensus 183 YN~~~s~i~~~A~~L~~~f~~~ 204 (277)
||+++|.+|.+|..|+++|.+.
T Consensus 83 yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 83 YYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999874
No 28
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=5.8e-26 Score=177.17 Aligned_cols=81 Identities=28% Similarity=0.560 Sum_probs=78.1
Q ss_pred CCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHH
Q psy16435 124 EDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRD 203 (277)
Q Consensus 124 ~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~i~~~A~~L~~~f~~ 203 (277)
..+++|..||+...+||||++|++||||+||+.||.+|.|.++.+|+.||.|||.||+.||+++|.+|.+|..|+++|+.
T Consensus 22 ~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f~~ 101 (103)
T cd05520 22 LLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLMQA 101 (103)
T ss_pred CccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred H
Q psy16435 204 A 204 (277)
Q Consensus 204 ~ 204 (277)
.
T Consensus 102 ~ 102 (103)
T cd05520 102 K 102 (103)
T ss_pred h
Confidence 3
No 29
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=9.3e-26 Score=175.94 Aligned_cols=83 Identities=23% Similarity=0.453 Sum_probs=79.0
Q ss_pred cCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q psy16435 122 SHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIF 201 (277)
Q Consensus 122 ~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~i~~~A~~L~~~f 201 (277)
++..+.+|..+|+...+||||++|++||||+||+.||.+|.|.|+.+|.+||.|||.||+.||+++|.+|.+|..|+++|
T Consensus 20 gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~ 99 (103)
T cd05518 20 GRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEGSQVYEDANILEKVL 99 (103)
T ss_pred CCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q psy16435 202 RDA 204 (277)
Q Consensus 202 ~~~ 204 (277)
...
T Consensus 100 ~~~ 102 (103)
T cd05518 100 KEK 102 (103)
T ss_pred Hhc
Confidence 763
No 30
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=3.4e-25 Score=179.32 Aligned_cols=103 Identities=25% Similarity=0.424 Sum_probs=97.4
Q ss_pred CChHHHHHHHHHHHHHHH---cCCCCCCCCCCCCCC-CCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q psy16435 104 STEEDLRIGMHKVMNRLK---SHEDAWPFCDPVDEA-TAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDN 179 (277)
Q Consensus 104 ~~~~~l~~~l~~il~~l~---~~~~s~~F~~pv~~~-~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~N 179 (277)
+....++..|..+|..|. .++.+++|..||+.. .+|+||++|++||||+||++||.+|.|.++++|..||.|||.|
T Consensus 20 ~~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~N 99 (128)
T cd05529 20 HIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSN 99 (128)
T ss_pred CCCHHHHHHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 345677888999999999 899999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy16435 180 CRKYNGLDNEYTDMVRRLQQIFRDAVS 206 (277)
Q Consensus 180 a~~YN~~~s~i~~~A~~L~~~f~~~~~ 206 (277)
|+.||+++|.++.+|..|.+.|...+.
T Consensus 100 a~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 100 AETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999988765
No 31
>smart00297 BROMO bromo domain.
Probab=99.93 E-value=4.3e-25 Score=172.70 Aligned_cols=102 Identities=37% Similarity=0.774 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcC
Q psy16435 106 EEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNG 185 (277)
Q Consensus 106 ~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~ 185 (277)
...+...|..|++.+..++.+++|..||+...+|+||.+|++||||++|++||++|.|.|+.+|.+||.+||.||+.||+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~ 84 (107)
T smart00297 5 QKKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNG 84 (107)
T ss_pred HHHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q psy16435 186 LDNEYTDMVRRLQQIFRDAVSR 207 (277)
Q Consensus 186 ~~s~i~~~A~~L~~~f~~~~~~ 207 (277)
++|.++.+|..|...|...+.+
T Consensus 85 ~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 85 PDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998875
No 32
>KOG0955|consensus
Probab=99.92 E-value=2.4e-25 Score=227.62 Aligned_cols=187 Identities=22% Similarity=0.395 Sum_probs=164.8
Q ss_pred CcccccchhhhhcccccchhHHhhccchHHHHHhhhhhHHHH--hhhhHHHHHHHH---HHHHhhHHHHHHH----HHHh
Q psy16435 1 MELEHFGWLVDSISSCQSTRIEKLKHSKEIERKLQKQKEEET--RRHQEEEERLEE---EWRKHKAARERQR----RIEN 71 (277)
Q Consensus 1 ~~~~~~~W~~kr~~r~g~~llkr~~~~~~~e~~~~~~~~~~~--~~~~e~~~~~~e---~~~~~r~~~er~R----~~rk 71 (277)
|+++|+||++||..|.|+||+++||+ +.+++++.++ ++.+.+..++.+ +|+.|++++++.+ +.++
T Consensus 470 ~~~i~~~w~~kR~~r~g~pLl~~lq~------~~~s~rn~~~~~~~~D~~~~~~~d~~k~~~~L~~~~~s~~~l~e~~r~ 543 (1051)
T KOG0955|consen 470 MDRICKYWYLKRLSRNGAPLLGRLQS------LSKSSRNKEQVGREGDLKNKARVDSLKYWQALRLDLESAQLLVELTRK 543 (1051)
T ss_pred hhhhhhhHHHHHHhhCCcchhhhhhh------hhhccccchhcccccCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 56899999999999999999999987 7888888887 455666666655 8999999999999 7888
Q ss_pred hhccCCCCCccCcCCcCcccccccCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcH
Q psy16435 72 RERGSRSNSEDRWTTEDTSSLCSYQTSTGGYRSTEEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDL 151 (277)
Q Consensus 72 Re~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL 151 (277)
|++.++.+..... ..+..+..++...|..+++.|...+....|..||+..++|||+++|++||||
T Consensus 544 r~~lk~~~~~~~~---------------~~~~~~l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~ 608 (1051)
T KOG0955|consen 544 REKLKRILVKSQK---------------EALELGLNPFKKLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDF 608 (1051)
T ss_pred HHHHHHHHhchhh---------------hhhcccCchHHHHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccch
Confidence 9999887655431 1122244578889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy16435 152 TRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSRY 208 (277)
Q Consensus 152 ~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~~ 208 (277)
.+|+.++.+|.|.++++|..|+.+|+.||+.||..++.+|++|.+++......+...
T Consensus 609 ~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~e~~~~~~~~a 665 (1051)
T KOG0955|consen 609 FTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLRELIKKDFRNA 665 (1051)
T ss_pred hhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHHhhhhhHHHhc
Confidence 999999999999999999999999999999999999999999999999888877665
No 33
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.4e-24 Score=168.76 Aligned_cols=95 Identities=21% Similarity=0.308 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhh
Q psy16435 109 LRIGMHKVMNRLKSHED------AWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRK 182 (277)
Q Consensus 109 l~~~l~~il~~l~~~~~------s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~ 182 (277)
|...|..+++.|..... +.+|..+|+...+||||++|++||||+||++||.+ |.|+.+|.+||.|||.||+.
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~ 79 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARL 79 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHH
Confidence 56778888888877655 46999999999999999999999999999999998 99999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHH
Q psy16435 183 YNGLDNEYTDMVRRLQQIFRDAV 205 (277)
Q Consensus 183 YN~~~s~i~~~A~~L~~~f~~~~ 205 (277)
||+++|.+|.+|..|+++|...+
T Consensus 80 yN~~~s~i~~~A~~le~~~~~~~ 102 (106)
T cd05521 80 YNTKGSVIYKYALILEKYINDVI 102 (106)
T ss_pred HcCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998865
No 34
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.1e-24 Score=168.69 Aligned_cols=95 Identities=25% Similarity=0.449 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHc------CCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy16435 110 RIGMHKVMNRLKS------HEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKY 183 (277)
Q Consensus 110 ~~~l~~il~~l~~------~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~Y 183 (277)
.+.+..|++.|.+ ++.+.+|..+|+...+|+||++|++||||++|++||.+|.|.++.+|..||.|||.||+.|
T Consensus 3 ~~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 82 (104)
T cd05522 3 EARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLY 82 (104)
T ss_pred HHHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3455666666655 4458899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q psy16435 184 NGLDNEYTDMVRRLQQIFRDA 204 (277)
Q Consensus 184 N~~~s~i~~~A~~L~~~f~~~ 204 (277)
|+++|.+|.+|..|++.|...
T Consensus 83 n~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 83 NENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999863
No 35
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.90 E-value=1.2e-23 Score=157.54 Aligned_cols=84 Identities=38% Similarity=0.722 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHH
Q psy16435 113 MHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEYTD 192 (277)
Q Consensus 113 l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~i~~ 192 (277)
|..||+.|..++.+.+|..||+...+|+|+.+|++||||++|++||.+|.|.++.+|..||.+||.||+.||+++|.+|.
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~ 80 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYK 80 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy16435 193 MVRR 196 (277)
Q Consensus 193 ~A~~ 196 (277)
+|.+
T Consensus 81 ~A~~ 84 (84)
T PF00439_consen 81 AAEK 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9963
No 36
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.89 E-value=3.9e-23 Score=157.64 Aligned_cols=95 Identities=36% Similarity=0.702 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q psy16435 110 RIGMHKVMNRLKSH--EDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLD 187 (277)
Q Consensus 110 ~~~l~~il~~l~~~--~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~ 187 (277)
...|..+++.|..+ +.+.+|..||+...+|+||.+|++||||++|+.||.+|.|.++.+|..||.+||.||+.||+++
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 35688999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy16435 188 NEYTDMVRRLQQIFRDA 204 (277)
Q Consensus 188 s~i~~~A~~L~~~f~~~ 204 (277)
|.++.+|..|...|...
T Consensus 82 ~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 82 SPIYKDAKKLEKLFEKL 98 (99)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 37
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.9e-22 Score=158.37 Aligned_cols=97 Identities=22% Similarity=0.316 Sum_probs=87.9
Q ss_pred HHHHHHHHHHc-CCCCCCCCCCCCC-----CCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcC
Q psy16435 112 GMHKVMNRLKS-HEDAWPFCDPVDE-----ATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNG 185 (277)
Q Consensus 112 ~l~~il~~l~~-~~~s~~F~~pv~~-----~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~ 185 (277)
.|..++..++. .+.+.||..||.. ..+|+||.+|++||||+||++||++|.|.++++|..||.|||+||..||+
T Consensus 4 ~L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg 83 (109)
T cd05492 4 LLKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHG 83 (109)
T ss_pred hHHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46677788887 6778999999952 25999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q psy16435 186 LDNEYTDMVRRLQQIFRDAVSRY 208 (277)
Q Consensus 186 ~~s~i~~~A~~L~~~f~~~~~~~ 208 (277)
++|.++.+|..|..-....+.++
T Consensus 84 ~~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 84 ADSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888877765
No 38
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=1.5e-21 Score=152.88 Aligned_cols=100 Identities=19% Similarity=0.308 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q psy16435 108 DLRIGMHKVMNRLKSHED------AWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCR 181 (277)
Q Consensus 108 ~l~~~l~~il~~l~~~~~------s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~ 181 (277)
-++..+..|+..+++|.+ +.+|+++|+ ..|+||.+|+.||||++|+.||.+|.|.++++|..||.+||.||+
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr 80 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERAR 80 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHH
Confidence 467788899999998865 779999998 567889999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy16435 182 KYNGLDNEYTDMVRRLQQIFRDAVSRYL 209 (277)
Q Consensus 182 ~YN~~~s~i~~~A~~L~~~f~~~~~~~~ 209 (277)
.||.++|.+|.+|..|+++|.....++.
T Consensus 81 ~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 81 RLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887764
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.79 E-value=2.2e-19 Score=169.56 Aligned_cols=89 Identities=34% Similarity=0.574 Sum_probs=85.1
Q ss_pred CCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHH
Q psy16435 124 EDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRD 203 (277)
Q Consensus 124 ~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~i~~~A~~L~~~f~~ 203 (277)
..+.+|..+|++..+|+||.||+.||||.+|+++|+++.|.++.+|..||+|||.||.+||+++|.+|.+|..|++.|..
T Consensus 164 ~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~ 243 (371)
T COG5076 164 FLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLK 243 (371)
T ss_pred ccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHHH
Confidence 44889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccc
Q psy16435 204 AVSRYLDGE 212 (277)
Q Consensus 204 ~~~~~~~~~ 212 (277)
.+..+....
T Consensus 244 ~i~~~~~~~ 252 (371)
T COG5076 244 LIEEIPEEM 252 (371)
T ss_pred HHHhccccc
Confidence 999886654
No 40
>KOG1245|consensus
Probab=99.77 E-value=3.3e-19 Score=188.90 Aligned_cols=97 Identities=34% Similarity=0.693 Sum_probs=94.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHH
Q psy16435 113 MHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEYTD 192 (277)
Q Consensus 113 l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~i~~ 192 (277)
|..||..|..|+.||||++||+...+||||+||++||||+||+.|+..|.|.++.+|..||.|||.||.+||.. |.+++
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ 1384 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGR 1384 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy16435 193 MVRRLQQIFRDAVSRYLD 210 (277)
Q Consensus 193 ~A~~L~~~f~~~~~~~~~ 210 (277)
+...|.++|...|...++
T Consensus 1385 ag~~l~~ff~~~~~~~~~ 1402 (1404)
T KOG1245|consen 1385 AGTCLRRFFHKRWRKKFP 1402 (1404)
T ss_pred hcchHHHHHHHHHHhhcC
Confidence 999999999998877654
No 41
>KOG1472|consensus
Probab=99.63 E-value=2.6e-16 Score=156.09 Aligned_cols=103 Identities=34% Similarity=0.713 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q psy16435 108 DLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLD 187 (277)
Q Consensus 108 ~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~ 187 (277)
.+...+..+|..|..|..+|||.+||+..++||||.+|++||||.||+.+|.++.|..+..|+.|+..||.||+.||+.+
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~ 685 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSD 685 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCcc
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhc
Q psy16435 188 NEYTDMVRRLQQIFRDAVSRYLD 210 (277)
Q Consensus 188 s~i~~~A~~L~~~f~~~~~~~~~ 210 (277)
+.+|+.|..|..+|...+...+.
T Consensus 686 ~~y~k~~~~le~~~~~k~~~~i~ 708 (720)
T KOG1472|consen 686 TQYYKCAQALEKFFLFKLNELIL 708 (720)
T ss_pred chheecccchhhhhcchhhhhhh
Confidence 99999999999999998887643
No 42
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.33 E-value=1.2e-12 Score=103.85 Aligned_cols=76 Identities=24% Similarity=0.335 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCC--CCCcchhhhccCCCcHHHHHHHHhCCCCCCHH-------HHHHHHHHHHHhh
Q psy16435 110 RIGMHKVMNRLKSHEDAWPFCDPVDE--ATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFG-------QFRADFQLIVDNC 180 (277)
Q Consensus 110 ~~~l~~il~~l~~~~~s~~F~~pv~~--~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~-------~f~~Dv~lm~~Na 180 (277)
...|..+|..+..++.++||..||++ ..+||||++|++||||+||+.+|.++.+++.. .+.+++..+..||
T Consensus 5 ~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (114)
T cd05494 5 LERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRR 84 (114)
T ss_pred HHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccccc
Confidence 34566777777778899999999999 78999999999999999999999997553333 3344444444444
Q ss_pred hhhcC
Q psy16435 181 RKYNG 185 (277)
Q Consensus 181 ~~YN~ 185 (277)
..+|.
T Consensus 85 ~~~~~ 89 (114)
T cd05494 85 SPSNI 89 (114)
T ss_pred Ccccc
Confidence 44443
No 43
>KOG1827|consensus
Probab=99.25 E-value=1.2e-11 Score=121.55 Aligned_cols=101 Identities=26% Similarity=0.406 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q psy16435 107 EDLRIGMHKVMNRLKSHED------AWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNC 180 (277)
Q Consensus 107 ~~l~~~l~~il~~l~~~~~------s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na 180 (277)
..+...+..+|..+..+.+ ...|.+.++....|+||.+|..||+|..|+.|+..+.|.+++.|..||.||+.||
T Consensus 51 ~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena 130 (629)
T KOG1827|consen 51 PPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENA 130 (629)
T ss_pred hHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 3455666677777765533 6799999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy16435 181 RKYNGLDNEYTDMVRRLQQIFRDAVSR 207 (277)
Q Consensus 181 ~~YN~~~s~i~~~A~~L~~~f~~~~~~ 207 (277)
..||.++|.+|++|..|+..|.....+
T Consensus 131 ~~~n~~ds~~~~~s~~l~~~~~~~~~~ 157 (629)
T KOG1827|consen 131 RLYNRPDSLIYKDSGELEKYFISLEDE 157 (629)
T ss_pred HHhcCcchhhhhhhhhhhcchhhhhcc
Confidence 999999999999999999999886654
No 44
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.19 E-value=1.6e-11 Score=96.83 Aligned_cols=42 Identities=31% Similarity=0.432 Sum_probs=40.0
Q ss_pred CCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCC
Q psy16435 147 RPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDN 188 (277)
Q Consensus 147 ~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s 188 (277)
.||||+||.+||.+|.|.++.+|++||+|||.||..||+++.
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 589999999999999999999999999999999999998754
No 45
>KOG0008|consensus
Probab=99.16 E-value=3.2e-11 Score=124.81 Aligned_cols=99 Identities=28% Similarity=0.650 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHH
Q psy16435 111 IGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEY 190 (277)
Q Consensus 111 ~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~i 190 (277)
..+-.++.+++..+.+|+|.+||+++.+|+||.+|++||||.+|.+++..+.|.+..+|..||++|+.||..||+..+.+
T Consensus 1385 ~~~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y 1464 (1563)
T KOG0008|consen 1385 FILDNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAY 1464 (1563)
T ss_pred hhhhhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccc
Confidence 55677888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy16435 191 TDMVRRLQQIFRDAVSRYL 209 (277)
Q Consensus 191 ~~~A~~L~~~f~~~~~~~~ 209 (277)
..-|+.+-.+....+.+.+
T Consensus 1465 ~~k~~k~~ev~~~~~~e~~ 1483 (1563)
T KOG0008|consen 1465 TKKARKIGEVGLANLLEYI 1483 (1563)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 9998888877777666543
No 46
>KOG0386|consensus
Probab=99.14 E-value=8.7e-11 Score=119.20 Aligned_cols=100 Identities=22% Similarity=0.397 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy16435 111 IGMHKVMNRLKSH------EDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYN 184 (277)
Q Consensus 111 ~~l~~il~~l~~~------~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN 184 (277)
..|..|+.....+ ..+..|...++...+||||.||+.||++..|.++|.++.|.+..+...||.++|.||.+||
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~ 1106 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYN 1106 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhc
Confidence 3466677666644 4478999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhc
Q psy16435 185 GLDNEYTDMVRRLQQIFRDAVSRYLD 210 (277)
Q Consensus 185 ~~~s~i~~~A~~L~~~f~~~~~~~~~ 210 (277)
..+|.+|.+|..|+.+|......+..
T Consensus 1107 ~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1107 EEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred cCCceechhHHHHHHHHhhhHHHHhc
Confidence 99999999999999999999888865
No 47
>KOG0008|consensus
Probab=98.97 E-value=8.7e-10 Score=114.42 Aligned_cols=99 Identities=25% Similarity=0.460 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q psy16435 108 DLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLD 187 (277)
Q Consensus 108 ~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~ 187 (277)
-+...+..|++++.......+|..||+.+.++|||.||+.||+|.++++.+....|.+-++|..|+.||+.|..+||++.
T Consensus 1261 ~~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~ 1340 (1563)
T KOG0008|consen 1261 SLSSILETIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPL 1340 (1563)
T ss_pred ecccchHHHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCch
Confidence 44667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy16435 188 NEYTDMVRRLQQIFRDAVS 206 (277)
Q Consensus 188 s~i~~~A~~L~~~f~~~~~ 206 (277)
+.+...+..+...+-..|.
T Consensus 1341 ~~~t~~~q~mls~~~~~~~ 1359 (1563)
T KOG0008|consen 1341 ASLTRQQQSMLSLCFEKLK 1359 (1563)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999988877665544443
No 48
>KOG1472|consensus
Probab=98.90 E-value=1.8e-09 Score=107.79 Aligned_cols=82 Identities=37% Similarity=0.558 Sum_probs=71.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy16435 105 TEEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYN 184 (277)
Q Consensus 105 ~~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN 184 (277)
..+.+...+. .+..+++|..+|+...+|+||.||+.||||+++.+|+..+.|.+.+.|+.|+.+||.||..||
T Consensus 290 ~~~~~~~~~~-------~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n 362 (720)
T KOG1472|consen 290 GQEELYEAAE-------RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYN 362 (720)
T ss_pred cCHHHHHHhc-------ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhc
Confidence 3445555544 478899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHH
Q psy16435 185 GLDNEYTDM 193 (277)
Q Consensus 185 ~~~s~i~~~ 193 (277)
...+.....
T Consensus 363 ~ee~~~~~~ 371 (720)
T KOG1472|consen 363 SEESHGLIE 371 (720)
T ss_pred cccchhhhh
Confidence 877654433
No 49
>KOG1828|consensus
Probab=98.77 E-value=1.2e-09 Score=101.18 Aligned_cols=99 Identities=25% Similarity=0.285 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q psy16435 108 DLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLD 187 (277)
Q Consensus 108 ~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~ 187 (277)
++..-...++..+-..+.-..|.-||.....|+|.+||+.|||+.||+.|++.+.|.++.+|..|..+|..||..||..+
T Consensus 19 p~~~~~ehhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~ 98 (418)
T KOG1828|consen 19 PDSGDAEHHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHP 98 (418)
T ss_pred cchhhHHHHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCC
Confidence 33444567777888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy16435 188 NEYTDMVRRLQQIFRDAVS 206 (277)
Q Consensus 188 s~i~~~A~~L~~~f~~~~~ 206 (277)
+.++..|.+|..+-.....
T Consensus 99 Tv~~~aaKrL~~v~~~~~q 117 (418)
T KOG1828|consen 99 TVPIVAAKRLCPVRLGMTQ 117 (418)
T ss_pred ccccccccccchhhcchhh
Confidence 9999999999887665554
No 50
>KOG1828|consensus
Probab=98.65 E-value=1.5e-08 Score=93.85 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCH
Q psy16435 110 RIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNE 189 (277)
Q Consensus 110 ~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~ 189 (277)
...+-....++...+...+|..+|....+|.|..+|++|+++.|+..|..++.|.| -+|..|+.||+.||++||.++..
T Consensus 210 ~~l~~~q~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~ 288 (418)
T KOG1828|consen 210 QQLQTLQEDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKS 288 (418)
T ss_pred HHHHHHHHHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchH
Confidence 34455667788888899999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy16435 190 YTDMVRRLQQ 199 (277)
Q Consensus 190 i~~~A~~L~~ 199 (277)
+|..|..+..
T Consensus 289 yyelank~lh 298 (418)
T KOG1828|consen 289 YYELANKQLH 298 (418)
T ss_pred HHHHHHhhhh
Confidence 9999987765
No 51
>KOG1474|consensus
Probab=98.49 E-value=3e-08 Score=99.94 Aligned_cols=92 Identities=32% Similarity=0.640 Sum_probs=84.0
Q ss_pred HHcCCCCCCCCCCCCCC--CCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q psy16435 120 LKSHEDAWPFCDPVDEA--TAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRL 197 (277)
Q Consensus 120 l~~~~~s~~F~~pv~~~--~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~i~~~A~~L 197 (277)
+..|..+++|..||+.. ..|+||.+|.+|||+.+|..++.+.+|.+..+..+||..+|.||..||.+.-.++.++..+
T Consensus 4 ~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~ 83 (640)
T KOG1474|consen 4 ARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSL 83 (640)
T ss_pred cccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccc
Confidence 45678899999999965 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q psy16435 198 QQIFRDAVSRYLDG 211 (277)
Q Consensus 198 ~~~f~~~~~~~~~~ 211 (277)
...|.+.+..++..
T Consensus 84 ~~~~~~~~~~~~~~ 97 (640)
T KOG1474|consen 84 EKLFPKKLRSMPSD 97 (640)
T ss_pred hhhccccccccccc
Confidence 99998877766443
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.45 E-value=3.7e-05 Score=72.94 Aligned_cols=93 Identities=32% Similarity=0.607 Sum_probs=83.5
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHH
Q psy16435 115 KVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEYTDMV 194 (277)
Q Consensus 115 ~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~i~~~A 194 (277)
.++.....+-.+|+|..+++....|+|+++|..+|++++..-++..+.|.....|..|..+++.||..||+....++..+
T Consensus 270 ~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (371)
T COG5076 270 VLITNSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNA 349 (371)
T ss_pred hcccccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhc
Confidence 33444466677999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy16435 195 RRLQQIFRDAVSR 207 (277)
Q Consensus 195 ~~L~~~f~~~~~~ 207 (277)
..+...+...+.-
T Consensus 350 ~~~~~~~~~~~~~ 362 (371)
T COG5076 350 NVLEDFVIKKTRL 362 (371)
T ss_pred cchhhhHhhhhhh
Confidence 9888888776553
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.81 E-value=0.003 Score=51.07 Aligned_cols=66 Identities=21% Similarity=0.289 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccC
Q psy16435 148 PMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSRYLDGER 213 (277)
Q Consensus 148 PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 213 (277)
|.||..|++|+..|.|.++.+|.+||-.|+.-++.=.+....+-++-..+..+|-+.+..+++...
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~ 124 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFN 124 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccccc
Confidence 889999999999999999999999999999988866554455555555667788888888877643
No 54
>KOG0644|consensus
Probab=95.90 E-value=0.0053 Score=62.58 Aligned_cols=61 Identities=16% Similarity=0.373 Sum_probs=53.1
Q ss_pred ccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHH
Q psy16435 145 IKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAV 205 (277)
Q Consensus 145 Ik~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~i~~~A~~L~~~f~~~~ 205 (277)
...|.+|..|+.+|++.+|++++.|.+|+..|.+||.+|.+.+--+...+..|..+|...+
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 5678999999999999999999999999999999999999888777777777777775543
No 55
>KOG0732|consensus
Probab=92.13 E-value=0.17 Score=53.72 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCCC-----CcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHH--HHHHHHHhhhhhcCCC
Q psy16435 125 DAWPFCDPVDEAT-----APNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRA--DFQLIVDNCRKYNGLD 187 (277)
Q Consensus 125 ~s~~F~~pv~~~~-----~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~--Dv~lm~~Na~~YN~~~ 187 (277)
.+..|-.|++... +++|-.+|++|||+...-.++..+.|.++.+|.. ++.|||.|++.||+..
T Consensus 532 ~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 532 SSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred cccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 3678888888653 5689999999999999999999999999999999 9999999999999876
No 56
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=91.65 E-value=0.064 Score=51.99 Aligned_cols=21 Identities=10% Similarity=-0.140 Sum_probs=19.0
Q ss_pred cccccchhhhhcccccchhHH
Q psy16435 2 ELEHFGWLVDSISSCQSTRIE 22 (277)
Q Consensus 2 ~~~~~~W~~kr~~r~g~~llk 22 (277)
-.+|+||.+||+++-|+||++
T Consensus 440 fdIckyw~mKR~~~~g~PL~~ 460 (669)
T COG5141 440 FDICKYWEMKRKSEIGGPLVI 460 (669)
T ss_pred hHHHHHHHHhhhhcCCCCcee
Confidence 368999999999999999984
No 57
>KOG1827|consensus
Probab=87.23 E-value=0.062 Score=53.88 Aligned_cols=77 Identities=9% Similarity=-0.096 Sum_probs=70.7
Q ss_pred CCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Q psy16435 126 AWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFR 202 (277)
Q Consensus 126 s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~i~~~A~~L~~~f~ 202 (277)
...|...++...+|.||.+++-||.+....+++..+.|.....|..|..++|.|+..||.....++..+..|.+...
T Consensus 213 Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~dv 289 (629)
T KOG1827|consen 213 IERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEEDV 289 (629)
T ss_pred ecccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccce
Confidence 45788888989999999999999999999999999999999999999999999999999999999999887766543
No 58
>KOG0644|consensus
Probab=78.18 E-value=0.89 Score=47.07 Aligned_cols=70 Identities=10% Similarity=0.085 Sum_probs=54.8
Q ss_pred CCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCC--------------C----------CHHH------HHHHHHHHHH
Q psy16435 129 FCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRY--------------K----------TFGQ------FRADFQLIVD 178 (277)
Q Consensus 129 F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y--------------~----------s~~~------f~~Dv~lm~~ 178 (277)
|.-+++...+|-|..+...|..|+|++..|.+..| . ++.+ ..+-+.+|-.
T Consensus 86 lv~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~ 165 (1113)
T KOG0644|consen 86 LVPMLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGC 165 (1113)
T ss_pred hccCcCCCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccccc
Confidence 34577878899999999999999999999988776 2 3333 5667888999
Q ss_pred hhhhhcCCCCHHHHHHHHHHH
Q psy16435 179 NCRKYNGLDNEYTDMVRRLQQ 199 (277)
Q Consensus 179 Na~~YN~~~s~i~~~A~~L~~ 199 (277)
||..+|.|+| +++-++.+..
T Consensus 166 at~~~akPgt-mvqkmk~ikr 185 (1113)
T KOG0644|consen 166 ATFSIAKPGT-MVQKMKNIKR 185 (1113)
T ss_pred ceeeecCcHH-HHHHHHHHHH
Confidence 9999999999 5555544433
No 59
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=69.34 E-value=1.5 Score=33.47 Aligned_cols=8 Identities=25% Similarity=0.468 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q psy16435 268 GTPFDSIP 275 (277)
Q Consensus 268 ~~~~d~~~ 275 (277)
+++++.+|
T Consensus 35 dee~de~p 42 (101)
T PF09026_consen 35 DEEEDEVP 42 (101)
T ss_dssp --------
T ss_pred cccccccc
Confidence 33333443
No 60
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=68.80 E-value=1.6 Score=32.42 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q psy16435 267 SGTPFDSIPSK 277 (277)
Q Consensus 267 ~~~~~d~~~~~ 277 (277)
+++++..+|.|
T Consensus 46 Ddeeee~m~rK 56 (81)
T PF14812_consen 46 DDEEEEPMPRK 56 (81)
T ss_dssp -----------
T ss_pred chhhccccccc
Confidence 33555555543
No 61
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=56.36 E-value=22 Score=25.37 Aligned_cols=27 Identities=11% Similarity=0.303 Sum_probs=23.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH
Q psy16435 152 TRMEEKLDAGRYKTFGQFRADFQLIVD 178 (277)
Q Consensus 152 ~tI~~kl~~~~Y~s~~~f~~Dv~lm~~ 178 (277)
..|+..+.+|.|.|..+++.+.-.++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999877665
No 62
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=54.42 E-value=53 Score=25.03 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy16435 160 AGRYKTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSRY 208 (277)
Q Consensus 160 ~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~~ 208 (277)
...|.|..-|...+..|-.....++..+..+..+|..|...|.+.|.+.
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3568888889888888887777777777889999999999999999864
No 63
>KOG4032|consensus
Probab=53.09 E-value=59 Score=27.85 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=15.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q psy16435 184 NGLDNEYTDMVRRLQQIFRDAVS 206 (277)
Q Consensus 184 N~~~s~i~~~A~~L~~~f~~~~~ 206 (277)
+..+..++..|..|..+|.....
T Consensus 81 ~~eDDS~~~ia~~L~n~f~~~~~ 103 (184)
T KOG4032|consen 81 KVEDDSLPEIAQLLLNLFHDIQN 103 (184)
T ss_pred cccCCCHHHHHHHHHHHHHHHHc
Confidence 35566678888888887766543
No 64
>KOG0954|consensus
Probab=40.32 E-value=17 Score=37.55 Aligned_cols=64 Identities=22% Similarity=0.145 Sum_probs=39.5
Q ss_pred ccccchhhhhcccccchhHHhhccchHHHHHhhhhhHHHHhhhhHHHHHHHHHHHHhhHHHHHHH----HHHhhhccC
Q psy16435 3 LEHFGWLVDSISSCQSTRIEKLKHSKEIERKLQKQKEEETRRHQEEEERLEEEWRKHKAARERQR----RIENRERGS 76 (277)
Q Consensus 3 ~~~~~W~~kr~~r~g~~llkr~~~~~~~e~~~~~~~~~~~~~~~e~~~~~~e~~~~~r~~~er~R----~~rkRe~~~ 76 (277)
-++.||.|||-+|..-+||= .+..+..+-.++..+..... ....-.+|.|++|+| .+-.|++..
T Consensus 505 ~iynywklkrks~~n~~lip----pk~d~~~~i~kk~~~~~kv~------~kl~ahlrqdlerv~~~~~~~trrekas 572 (893)
T KOG0954|consen 505 AIYNYWKLKRKSRFNKELIP----PKSDEVGLIAKKLEDLGKVR------VKLVAHLRQDLERVRNLCYTKTRREKAS 572 (893)
T ss_pred HHHHHHHHhhhccCCCcCCC----CcchhccchhhHHHHhhhhh------hHHHHHHHHHHHHhhcccchhcccchhh
Confidence 35789999999999899883 33344444444333332221 014567889999999 344455544
No 65
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=40.31 E-value=42 Score=24.67 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH
Q psy16435 152 TRMEEKLDAGRYKTFGQFRADFQLIVD 178 (277)
Q Consensus 152 ~tI~~kl~~~~Y~s~~~f~~Dv~lm~~ 178 (277)
.-|...+.+|.|.|..+++.|.-.++.
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 358999999999999999999666554
No 66
>KOG0732|consensus
Probab=28.15 E-value=17 Score=39.15 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=45.8
Q ss_pred CCCCCCCCCcchhhhccCC--CcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCC
Q psy16435 130 CDPVDEATAPNYYEQIKRP--MDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDN 188 (277)
Q Consensus 130 ~~pv~~~~~PdYy~iIk~P--mdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s 188 (277)
...+.-..+.+++.++..| |++..|-+++..|.|.+..+|..|+.+|..||..++....
T Consensus 790 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~r~~s~~~~~~~q~l~d~~li~r~a~~~~~~~~ 850 (1080)
T KOG0732|consen 790 KEECQYESSDNVVKILQINQMDWLEEILKRVWSGEYSTPKQFLSDIKLILRDASSSEDSET 850 (1080)
T ss_pred cCCccccccccceeehhhhhhHHHHHHhhcCCcccccccccccccchhhcccchhccCchh
Confidence 3333434567777777766 4455688999999999999999999999999999987543
No 67
>KOG0772|consensus
Probab=26.99 E-value=58 Score=32.46 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=7.3
Q ss_pred CccccccccccCCCCCCC
Q psy16435 256 DEEEDKENEEKSGTPFDS 273 (277)
Q Consensus 256 ~~ee~ee~ee~~~~~~d~ 273 (277)
++++++.++++|++++.+
T Consensus 133 e~~ddd~e~deD~~~e~~ 150 (641)
T KOG0772|consen 133 EGEDDDSEEDEDEDEEES 150 (641)
T ss_pred cCccccccccccccchhc
Confidence 333333333344444444
No 68
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=24.51 E-value=22 Score=22.98 Aligned_cols=11 Identities=36% Similarity=0.389 Sum_probs=8.8
Q ss_pred cccchhhhhcc
Q psy16435 4 EHFGWLVDSIS 14 (277)
Q Consensus 4 ~~~~W~~kr~~ 14 (277)
.++||+.-|+-
T Consensus 21 ~LrYWsv~~QE 31 (42)
T PF09866_consen 21 ELRYWSVDRQE 31 (42)
T ss_pred HhccCChhhhh
Confidence 58999998763
Done!