Query psy16435
Match_columns 277
No_of_seqs 337 out of 1397
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 21:13:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g0l_A Hwalp4, bromodomain adj 100.0 5.7E-30 2E-34 203.1 14.0 103 108-210 13-115 (117)
2 3d7c_A General control of amin 100.0 3.7E-30 1.3E-34 202.7 12.7 105 105-209 4-108 (112)
3 2grc_A Probable global transcr 100.0 4.9E-30 1.7E-34 206.9 12.8 113 102-214 5-124 (129)
4 2oss_A HUNK1 protein, bromodom 100.0 1.1E-29 3.7E-34 204.4 13.8 108 103-210 16-125 (127)
5 2dat_A Possible global transcr 100.0 9E-30 3.1E-34 203.7 13.1 109 102-210 7-121 (123)
6 2i7k_A Bromodomain-containing 100.0 1.4E-29 4.6E-34 201.0 13.8 106 106-211 6-111 (117)
7 2d9e_A Peregrin; four-helix bu 100.0 1.6E-29 5.4E-34 201.8 13.5 104 107-210 6-109 (121)
8 4alg_A Bromodomain-containing 100.0 1E-29 3.4E-34 210.9 12.8 110 102-211 26-137 (154)
9 3q2e_A Bromodomain and WD repe 100.0 1.3E-29 4.5E-34 202.8 11.5 109 106-214 8-117 (123)
10 1e6i_A Transcriptional activat 100.0 1.9E-29 6.5E-34 201.3 11.7 102 109-210 14-115 (121)
11 3p1f_A CREB-binding protein; s 100.0 5E-29 1.7E-33 198.3 13.7 108 103-210 6-116 (119)
12 3nxb_A CAT eye syndrome critic 100.0 2.1E-29 7.2E-34 199.6 11.4 100 108-207 16-115 (116)
13 3mb3_A PH-interacting protein; 100.0 2.2E-29 7.4E-34 204.6 11.4 107 106-212 19-126 (135)
14 3ljw_A Protein polybromo-1; al 100.0 7.3E-29 2.5E-33 197.6 12.4 107 105-211 5-117 (120)
15 3hme_A Bromodomain-containing 100.0 9E-29 3.1E-33 197.9 13.0 101 108-208 13-113 (123)
16 3rcw_A Bromodomain-containing 100.0 1.4E-28 4.8E-33 199.8 14.1 103 108-210 13-115 (135)
17 3mb4_A Protein polybromo-1; PB 100.0 8.5E-29 2.9E-33 198.3 12.2 103 107-209 14-122 (124)
18 3k2j_A Protein polybromo-1; PB 100.0 1.4E-28 4.7E-33 198.6 13.3 110 103-212 12-127 (130)
19 2ouo_A HUNK1 protein, bromodom 100.0 7.6E-29 2.6E-33 200.2 11.4 105 106-210 20-129 (130)
20 3mqm_A Probable histone-lysine 100.0 9.4E-29 3.2E-33 198.6 11.8 106 107-212 8-119 (126)
21 3fkm_X Signaling protein; brom 100.0 1.1E-28 3.8E-33 207.0 12.3 110 100-209 13-124 (166)
22 3iu5_A Protein polybromo-1; PB 100.0 1.6E-28 5.3E-33 194.6 11.9 103 109-211 6-114 (116)
23 3jvl_A Bromodomain-containing 100.0 4.4E-29 1.5E-33 198.9 8.7 104 108-211 9-117 (120)
24 2yyn_A Transcription intermedi 100.0 3.6E-28 1.2E-32 197.4 13.6 106 107-213 19-126 (135)
25 3uv4_A Second bromodomain of h 99.9 1.6E-27 5.3E-32 198.5 12.6 106 106-211 27-133 (158)
26 3dai_A ATPase family AAA domai 99.9 6.2E-27 2.1E-31 188.9 12.9 103 106-208 8-114 (130)
27 2ri7_A Nucleosome-remodeling f 99.9 2.7E-27 9.3E-32 199.9 11.2 103 106-208 70-172 (174)
28 3tlp_A Protein polybromo-1; PB 99.9 9E-27 3.1E-31 192.4 12.1 103 110-212 26-135 (150)
29 3o36_A Transcription intermedi 99.9 1.7E-26 5.9E-31 196.8 13.4 107 103-210 76-184 (184)
30 2dkw_A Hypothetical protein KI 99.9 1.5E-25 5.3E-30 180.9 11.8 101 105-210 9-113 (131)
31 3uv5_A Transcription initiatio 99.9 2E-25 6.9E-30 200.4 13.4 104 106-209 12-115 (265)
32 3u5n_A E3 ubiquitin-protein li 99.9 4E-25 1.4E-29 191.7 13.5 107 105-212 78-204 (207)
33 3uv5_A Transcription initiatio 99.9 1.1E-24 3.9E-29 195.5 12.9 105 107-211 135-240 (265)
34 2ro1_A Transcription intermedi 99.9 4.1E-25 1.4E-29 189.0 9.5 103 107-214 75-182 (189)
35 3aad_A Transcription initiatio 99.9 2.3E-24 7.9E-29 196.0 10.3 103 106-208 45-147 (292)
36 3aad_A Transcription initiatio 99.9 5.3E-24 1.8E-28 193.6 12.7 103 108-210 169-272 (292)
37 2r0y_A Chromatin structure-rem 99.9 1.9E-23 6.4E-28 191.4 9.9 87 122-208 177-263 (311)
38 2r10_A Chromatin structure-rem 99.9 3.7E-23 1.2E-27 193.2 10.3 86 123-208 228-313 (361)
39 3iu6_A Protein polybromo-1; PB 99.9 4.4E-21 1.5E-25 156.2 12.8 101 108-212 7-113 (147)
40 2r10_A Chromatin structure-rem 99.8 9.2E-22 3.1E-26 183.7 8.4 99 108-208 78-179 (361)
41 2r0y_A Chromatin structure-rem 99.8 1.4E-21 4.8E-26 179.0 8.4 99 108-208 28-129 (311)
42 3lqh_A Histone-lysine N-methyl 99.6 2.3E-16 7.8E-21 133.7 8.5 98 106-214 73-170 (183)
43 2jb0_B Colicin E7; hydrolase/i 36.8 27 0.00092 27.2 3.3 33 152-184 33-65 (131)
44 1fr2_B Colicin E9; protein-pro 36.7 27 0.00093 27.3 3.3 34 152-185 36-69 (134)
45 1pp5_A Microcin J25; lariat, p 27.8 9.2 0.00031 20.6 -0.5 15 137-151 5-19 (26)
46 7cei_B Protein (colicin E7 imm 26.0 57 0.0019 27.1 3.6 33 152-184 108-140 (206)
47 3kxe_C Antitoxin protein PARD- 25.0 86 0.003 22.4 4.1 29 152-180 16-44 (88)
No 1
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.97 E-value=5.7e-30 Score=203.13 Aligned_cols=103 Identities=29% Similarity=0.588 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q psy16435 108 DLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLD 187 (277)
Q Consensus 108 ~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~ 187 (277)
.....|..||..|..++.+++|..||+...+||||++|++||||+||++||.+|.|.++++|.+||+|||.||+.||+++
T Consensus 13 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 92 (117)
T 3g0l_A 13 KDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDD 92 (117)
T ss_dssp THHHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhc
Q psy16435 188 NEYTDMVRRLQQIFRDAVSRYLD 210 (277)
Q Consensus 188 s~i~~~A~~L~~~f~~~~~~~~~ 210 (277)
|.+|.+|..|++.|+..|.+++.
T Consensus 93 s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 93 SDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999875
No 2
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.97 E-value=3.7e-30 Score=202.73 Aligned_cols=105 Identities=36% Similarity=0.661 Sum_probs=101.6
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy16435 105 TEEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYN 184 (277)
Q Consensus 105 ~~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN 184 (277)
....|...|..||+.|..++.+++|..||++..+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 4 ~~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 83 (112)
T 3d7c_A 4 DPDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYN 83 (112)
T ss_dssp SHHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhh
Q psy16435 185 GLDNEYTDMVRRLQQIFRDAVSRYL 209 (277)
Q Consensus 185 ~~~s~i~~~A~~L~~~f~~~~~~~~ 209 (277)
+++|.+|.+|..|+..|+..+.++.
T Consensus 84 ~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 84 PPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999998764
No 3
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.97 E-value=4.9e-30 Score=206.89 Aligned_cols=113 Identities=19% Similarity=0.360 Sum_probs=105.1
Q ss_pred CCCChHHHHHHHHHHHHHHHcCC-------CCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHH
Q psy16435 102 YRSTEEDLRIGMHKVMNRLKSHE-------DAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQ 174 (277)
Q Consensus 102 ~~~~~~~l~~~l~~il~~l~~~~-------~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~ 174 (277)
+.+.+..|...|..||+.|..+. .+++|..||+...+||||++|++||||+||++||.+|.|.++.+|.+||+
T Consensus 5 ~~~~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~ 84 (129)
T 2grc_A 5 LSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVM 84 (129)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 44566799999999999999875 48899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCC
Q psy16435 175 LIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSRYLDGERS 214 (277)
Q Consensus 175 lm~~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 214 (277)
|||.||++||+++|.+|.+|..|+++|...+.++.....+
T Consensus 85 Li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~~ 124 (129)
T 2grc_A 85 LLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDS 124 (129)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 9999999999999999999999999999999999876543
No 4
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.96 E-value=1.1e-29 Score=204.38 Aligned_cols=108 Identities=28% Similarity=0.553 Sum_probs=102.0
Q ss_pred CCChHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC--CCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q psy16435 103 RSTEEDLRIGMHKVMNRLKSHEDAWPFCDPVDEA--TAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNC 180 (277)
Q Consensus 103 ~~~~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~--~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na 180 (277)
.....+|+..|..||..|+.++.+++|..||+.. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||
T Consensus 16 ~r~~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 95 (127)
T 2oss_A 16 KRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNC 95 (127)
T ss_dssp CCCCHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3445789999999999999999999999999975 89999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHhhc
Q psy16435 181 RKYNGLDNEYTDMVRRLQQIFRDAVSRYLD 210 (277)
Q Consensus 181 ~~YN~~~s~i~~~A~~L~~~f~~~~~~~~~ 210 (277)
++||+++|.+|.+|..|++.|+..+.+++.
T Consensus 96 ~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 125 (127)
T 2oss_A 96 YIYNKPGDDIVLMAEALEKLFLQKINELPT 125 (127)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999988754
No 5
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=9e-30 Score=203.75 Aligned_cols=109 Identities=19% Similarity=0.372 Sum_probs=102.6
Q ss_pred CCCChHHHHHHHHHHHHHHHcCC------CCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHH
Q psy16435 102 YRSTEEDLRIGMHKVMNRLKSHE------DAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQL 175 (277)
Q Consensus 102 ~~~~~~~l~~~l~~il~~l~~~~------~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~l 175 (277)
...+...|...|..||+.|..+. .+++|..||+...+||||++|++||||+||++||.++.|.++++|.+||+|
T Consensus 7 ~~~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~l 86 (123)
T 2dat_A 7 GSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVML 86 (123)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 34456799999999999999886 488999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhc
Q psy16435 176 IVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSRYLD 210 (277)
Q Consensus 176 m~~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~~~~ 210 (277)
||.||++||+++|.+|.+|..|+++|+..+++++.
T Consensus 87 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 87 LCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999988764
No 6
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.96 E-value=1.4e-29 Score=200.96 Aligned_cols=106 Identities=25% Similarity=0.420 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcC
Q psy16435 106 EEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNG 185 (277)
Q Consensus 106 ~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~ 185 (277)
..+|+..|..||..|+.++.+++|..||++..+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||+
T Consensus 6 ~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 85 (117)
T 2i7k_A 6 QTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNK 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcc
Q psy16435 186 LDNEYTDMVRRLQQIFRDAVSRYLDG 211 (277)
Q Consensus 186 ~~s~i~~~A~~L~~~f~~~~~~~~~~ 211 (277)
++|.+|.+|..|++.|...+..++-.
T Consensus 86 ~~s~i~~~A~~L~~~f~~~~~~~~~~ 111 (117)
T 2i7k_A 86 PETIYYKAAKKLLHSGMKILSQERLE 111 (117)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987643
No 7
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.96 E-value=1.6e-29 Score=201.76 Aligned_cols=104 Identities=32% Similarity=0.563 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCC
Q psy16435 107 EDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGL 186 (277)
Q Consensus 107 ~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~ 186 (277)
.+|...|..||+.|+.++.+++|..||++..+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++
T Consensus 6 ~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 85 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAK 85 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred cHHHHHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhc
Q psy16435 187 DNEYTDMVRRLQQIFRDAVSRYLD 210 (277)
Q Consensus 187 ~s~i~~~A~~L~~~f~~~~~~~~~ 210 (277)
+|.+|.+|..|++.|...+.++..
T Consensus 86 ~s~~~~~A~~L~~~~~~~l~~~~~ 109 (121)
T 2d9e_A 86 DTIFYRAAVRLREQGGAVLRQARR 109 (121)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987754
No 8
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.96 E-value=1e-29 Score=210.94 Aligned_cols=110 Identities=29% Similarity=0.496 Sum_probs=104.1
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC--CCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q psy16435 102 YRSTEEDLRIGMHKVMNRLKSHEDAWPFCDPVDEA--TAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDN 179 (277)
Q Consensus 102 ~~~~~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~--~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~N 179 (277)
-.....+|+..|..||+.|+.++.+++|..||+.. .+||||++|++||||+||++||.++.|.++++|..||+|||.|
T Consensus 26 ~~r~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N 105 (154)
T 4alg_A 26 PGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTN 105 (154)
T ss_dssp CCCCBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 34456799999999999999999999999999988 6999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcc
Q psy16435 180 CRKYNGLDNEYTDMVRRLQQIFRDAVSRYLDG 211 (277)
Q Consensus 180 a~~YN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 211 (277)
|++||+++|.||.+|..|+++|+..+.++...
T Consensus 106 a~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 137 (154)
T 4alg_A 106 CYIYNKPTDDIVLMAQTLEKIFLQKVASMPQE 137 (154)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCch
Confidence 99999999999999999999999999988654
No 9
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.96 E-value=1.3e-29 Score=202.77 Aligned_cols=109 Identities=28% Similarity=0.479 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcC
Q psy16435 106 EEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNG 185 (277)
Q Consensus 106 ~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~ 185 (277)
...|+..|..||+.|..++.+++|..||++..+||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||+
T Consensus 8 ~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 87 (123)
T 3q2e_A 8 ESNWKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTP 87 (123)
T ss_dssp --CHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHHhhcccCC
Q psy16435 186 L-DNEYTDMVRRLQQIFRDAVSRYLDGERS 214 (277)
Q Consensus 186 ~-~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 214 (277)
+ +|.+|.+|..|+.+|+..+.++++....
T Consensus 88 ~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 117 (123)
T 3q2e_A 88 NKRSKIYSMTLRLSALFEEKMKKISSDFKI 117 (123)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 9999999999999999999999876543
No 10
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.96 E-value=1.9e-29 Score=201.29 Aligned_cols=102 Identities=35% Similarity=0.771 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCC
Q psy16435 109 LRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDN 188 (277)
Q Consensus 109 l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s 188 (277)
....|..||..|+.++.+++|..||+...+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||+++|
T Consensus 14 ~~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s 93 (121)
T 1e6i_A 14 HDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENT 93 (121)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q psy16435 189 EYTDMVRRLQQIFRDAVSRYLD 210 (277)
Q Consensus 189 ~i~~~A~~L~~~f~~~~~~~~~ 210 (277)
.+|.+|..|++.|+..+..++.
T Consensus 94 ~i~~~A~~L~~~f~~~~~~~p~ 115 (121)
T 1e6i_A 94 SYYKYANRLEKFFNNKVKEIPE 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999988754
No 11
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.96 E-value=5e-29 Score=198.25 Aligned_cols=108 Identities=27% Similarity=0.531 Sum_probs=102.5
Q ss_pred CCChHHHHHHHHHHHHHHHc-CCCCCCCCCCCCCC--CCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q psy16435 103 RSTEEDLRIGMHKVMNRLKS-HEDAWPFCDPVDEA--TAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDN 179 (277)
Q Consensus 103 ~~~~~~l~~~l~~il~~l~~-~~~s~~F~~pv~~~--~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~N 179 (277)
.....+|...|..+|..|.. ++.+++|..||++. .+||||++|++||||+||++||.+|.|.++++|.+||+|||.|
T Consensus 6 ~~~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (119)
T 3p1f_A 6 IFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNN 85 (119)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 34578999999999999988 67999999999988 7999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHHHhhc
Q psy16435 180 CRKYNGLDNEYTDMVRRLQQIFRDAVSRYLD 210 (277)
Q Consensus 180 a~~YN~~~s~i~~~A~~L~~~f~~~~~~~~~ 210 (277)
|++||+++|.+|.+|..|+..|++.+..++.
T Consensus 86 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 116 (119)
T 3p1f_A 86 AWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 116 (119)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998865
No 12
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.96 E-value=2.1e-29 Score=199.57 Aligned_cols=100 Identities=47% Similarity=0.838 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q psy16435 108 DLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLD 187 (277)
Q Consensus 108 ~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~ 187 (277)
++...|..+|..|+.++.+++|..||++..+||||++|++||||+||++||.+|.|.++++|..||+|||.||+.||+++
T Consensus 16 ~~~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 95 (116)
T 3nxb_A 16 DDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGES 95 (116)
T ss_dssp CHHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q psy16435 188 NEYTDMVRRLQQIFRDAVSR 207 (277)
Q Consensus 188 s~i~~~A~~L~~~f~~~~~~ 207 (277)
|.++.+|..|+.+|+..|.+
T Consensus 96 s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 96 SEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998864
No 13
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.96 E-value=2.2e-29 Score=204.62 Aligned_cols=107 Identities=28% Similarity=0.460 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcC
Q psy16435 106 EEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNG 185 (277)
Q Consensus 106 ~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~ 185 (277)
...|...|..||+.|..++.+++|..||+...+||||++|++||||+||++||.+|.|.++++|..||.|||.||+.||+
T Consensus 19 ~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 98 (135)
T 3mb3_A 19 IQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTP 98 (135)
T ss_dssp SSTHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHHhhccc
Q psy16435 186 L-DNEYTDMVRRLQQIFRDAVSRYLDGE 212 (277)
Q Consensus 186 ~-~s~i~~~A~~L~~~f~~~~~~~~~~~ 212 (277)
+ +|.||.+|..|+++|+..+..+++..
T Consensus 99 ~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 126 (135)
T 3mb3_A 99 SKRSRIYSMSLRLSAFFEEHISSVLSDY 126 (135)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 89999999999999999999987753
No 14
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.96 E-value=7.3e-29 Score=197.63 Aligned_cols=107 Identities=19% Similarity=0.364 Sum_probs=101.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q psy16435 105 TEEDLRIGMHKVMNRLKSHED------AWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVD 178 (277)
Q Consensus 105 ~~~~l~~~l~~il~~l~~~~~------s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~ 178 (277)
.+..|+..|..+++.|..+.+ +++|..||+...+||||++|++||||+||++||.+|.|.++.+|..||+|||.
T Consensus 5 ~p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 84 (120)
T 3ljw_A 5 SPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAK 84 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 356889999999999998877 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhcc
Q psy16435 179 NCRKYNGLDNEYTDMVRRLQQIFRDAVSRYLDG 211 (277)
Q Consensus 179 Na~~YN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 211 (277)
||+.||+++|.+|.+|..|+++|+..+.++...
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 85 NAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999988643
No 15
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.96 E-value=9e-29 Score=197.93 Aligned_cols=101 Identities=30% Similarity=0.499 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q psy16435 108 DLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLD 187 (277)
Q Consensus 108 ~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~ 187 (277)
+++..|..||..|..++.+++|..||++..+||||++|++||||+||++||.+|.|.++++|..||+|||.||+.||+++
T Consensus 13 p~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 92 (123)
T 3hme_A 13 PIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPD 92 (123)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q psy16435 188 NEYTDMVRRLQQIFRDAVSRY 208 (277)
Q Consensus 188 s~i~~~A~~L~~~f~~~~~~~ 208 (277)
|.+|.+|..|.+.|...+.+.
T Consensus 93 s~~~~~A~~L~~~~~~~~~~~ 113 (123)
T 3hme_A 93 TVYYKLAKKILHAGFKMMSKE 113 (123)
T ss_dssp SHHHHHHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987653
No 16
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=199.82 Aligned_cols=103 Identities=32% Similarity=0.587 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q psy16435 108 DLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLD 187 (277)
Q Consensus 108 ~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~ 187 (277)
+|...|..||+.|+.++.+++|..||+...+||||++|++||||+||++||.+|.|.++++|..||+|||.||+.||+++
T Consensus 13 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 92 (135)
T 3rcw_A 13 PLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARD 92 (135)
T ss_dssp HHHHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhc
Q psy16435 188 NEYTDMVRRLQQIFRDAVSRYLD 210 (277)
Q Consensus 188 s~i~~~A~~L~~~f~~~~~~~~~ 210 (277)
|.+|.+|..|.+.|...+..+..
T Consensus 93 s~~~~~A~~L~~~~~~~~~~~~~ 115 (135)
T 3rcw_A 93 TVFYRAAVRLRDQGGVVLRQARR 115 (135)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998744
No 17
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.96 E-value=8.5e-29 Score=198.34 Aligned_cols=103 Identities=18% Similarity=0.349 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHcC------CCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q psy16435 107 EDLRIGMHKVMNRLKSH------EDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNC 180 (277)
Q Consensus 107 ~~l~~~l~~il~~l~~~------~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na 180 (277)
.+|+..|..||+.|..+ ..+++|..||+...+||||++|++||||+||++||.+|.|.++++|..||+|||.||
T Consensus 14 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 93 (124)
T 3mb4_A 14 TPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNA 93 (124)
T ss_dssp CHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 38899999999999984 447999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy16435 181 RKYNGLDNEYTDMVRRLQQIFRDAVSRYL 209 (277)
Q Consensus 181 ~~YN~~~s~i~~~A~~L~~~f~~~~~~~~ 209 (277)
++||+++|.+|.+|..|+++|...+.++.
T Consensus 94 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 94 CTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999874
No 18
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=198.60 Aligned_cols=110 Identities=25% Similarity=0.458 Sum_probs=103.3
Q ss_pred CCChHHHHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHH
Q psy16435 103 RSTEEDLRIGMHKVMNRLKSHED------AWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLI 176 (277)
Q Consensus 103 ~~~~~~l~~~l~~il~~l~~~~~------s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm 176 (277)
......|...|..+++.|....+ +++|..||+...+||||++|++||||+||++||.++.|.|+++|..||+||
T Consensus 12 ~~~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Li 91 (130)
T 3k2j_A 12 DLGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLM 91 (130)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 34567899999999999998755 899999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhhccc
Q psy16435 177 VDNCRKYNGLDNEYTDMVRRLQQIFRDAVSRYLDGE 212 (277)
Q Consensus 177 ~~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 212 (277)
|.||++||+++|.+|.+|..|++.|+..+.++....
T Consensus 92 f~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~ 127 (130)
T 3k2j_A 92 FENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARRD 127 (130)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999987643
No 19
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.96 E-value=7.6e-29 Score=200.18 Aligned_cols=105 Identities=32% Similarity=0.611 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHHHHcCCC---CCCCCCCCCCC--CCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q psy16435 106 EEDLRIGMHKVMNRLKSHED---AWPFCDPVDEA--TAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNC 180 (277)
Q Consensus 106 ~~~l~~~l~~il~~l~~~~~---s~~F~~pv~~~--~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na 180 (277)
.......|..||..|..++. +++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||
T Consensus 20 ~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na 99 (130)
T 2ouo_A 20 VSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNC 99 (130)
T ss_dssp HHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 34556779999999998875 89999999987 49999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHhhc
Q psy16435 181 RKYNGLDNEYTDMVRRLQQIFRDAVSRYLD 210 (277)
Q Consensus 181 ~~YN~~~s~i~~~A~~L~~~f~~~~~~~~~ 210 (277)
++||+++|.+|.+|..|+.+|+..|.+++.
T Consensus 100 ~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 100 YKYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999998764
No 20
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.96 E-value=9.4e-29 Score=198.59 Aligned_cols=106 Identities=26% Similarity=0.393 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q psy16435 107 EDLRIGMHKVMNRLKSHED------AWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNC 180 (277)
Q Consensus 107 ~~l~~~l~~il~~l~~~~~------s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na 180 (277)
..|+..|..+++.|..+.+ +++|..||+...+||||++|++||||+||++||.+|.|.++++|.+||+|||.||
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 87 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNA 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 4788899999999998754 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHhhccc
Q psy16435 181 RKYNGLDNEYTDMVRRLQQIFRDAVSRYLDGE 212 (277)
Q Consensus 181 ~~YN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 212 (277)
+.||+++|.+|.+|..|+++|+..+.++.+..
T Consensus 88 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l 119 (126)
T 3mqm_A 88 EKYYGRKSPVGRDVCRLRKAYYNARHEASAQI 119 (126)
T ss_dssp HHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887653
No 21
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.96 E-value=1.1e-28 Score=207.04 Aligned_cols=110 Identities=25% Similarity=0.410 Sum_probs=100.0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC--CCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q psy16435 100 GGYRSTEEDLRIGMHKVMNRLKSHEDAWPFCDPVDEA--TAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIV 177 (277)
Q Consensus 100 ~~~~~~~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~--~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~ 177 (277)
....+...+|+..|..||..|+.++.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||
T Consensus 13 ~~~~p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif 92 (166)
T 3fkm_X 13 NLYFQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIF 92 (166)
T ss_dssp ----CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3445567899999999999999999999999999976 69999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy16435 178 DNCRKYNGLDNEYTDMVRRLQQIFRDAVSRYL 209 (277)
Q Consensus 178 ~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~~~ 209 (277)
.||++||+++|.||.+|..|+++|...|.++.
T Consensus 93 ~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 93 DNCSLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999998864
No 22
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.95 E-value=1.6e-28 Score=194.59 Aligned_cols=103 Identities=22% Similarity=0.443 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhh
Q psy16435 109 LRIGMHKVMNRLKSHED------AWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRK 182 (277)
Q Consensus 109 l~~~l~~il~~l~~~~~------s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~ 182 (277)
....|..|++.|..+.+ +++|..||+...+||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.
T Consensus 6 ~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 85 (116)
T 3iu5_A 6 PIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKS 85 (116)
T ss_dssp HHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 46779999999998744 899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHhhcc
Q psy16435 183 YNGLDNEYTDMVRRLQQIFRDAVSRYLDG 211 (277)
Q Consensus 183 YN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 211 (277)
||+++|.+|.+|..|+++|+..+.+++..
T Consensus 86 yN~~~s~~~~~A~~L~~~f~~~~~~l~~~ 114 (116)
T 3iu5_A 86 YYKPDSPEYKAACKLWDLYLRTRNEFVQK 114 (116)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999764
No 23
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.95 E-value=4.4e-29 Score=198.88 Aligned_cols=104 Identities=32% Similarity=0.621 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHcCCC---CCCCCCCCCCCC--CcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhh
Q psy16435 108 DLRIGMHKVMNRLKSHED---AWPFCDPVDEAT--APNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRK 182 (277)
Q Consensus 108 ~l~~~l~~il~~l~~~~~---s~~F~~pv~~~~--~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~ 182 (277)
+....|..||..|..++. +++|..||++.. +||||++|++||||+||++||.+|.|.++++|..||+|||.||++
T Consensus 9 ~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 88 (120)
T 3jvl_A 9 EQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYK 88 (120)
T ss_dssp HHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 567789999999999887 899999999987 999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHhhcc
Q psy16435 183 YNGLDNEYTDMVRRLQQIFRDAVSRYLDG 211 (277)
Q Consensus 183 YN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 211 (277)
||+++|.+|.+|..|+..|+..+.+++..
T Consensus 89 yN~~~s~~~~~A~~L~~~f~~~~~~~p~~ 117 (120)
T 3jvl_A 89 YNPPDHEVVAMARKLQDVFEMRFAKMPDE 117 (120)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCcCC
Confidence 99999999999999999999999988653
No 24
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.95 E-value=3.6e-28 Score=197.41 Aligned_cols=106 Identities=31% Similarity=0.534 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhhhhhc
Q psy16435 107 EDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDA--GRYKTFGQFRADFQLIVDNCRKYN 184 (277)
Q Consensus 107 ~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~--~~Y~s~~~f~~Dv~lm~~Na~~YN 184 (277)
+..+..|..||..|+.++.+++|..||+. .+||||++|++||||+||++||.+ +.|.++.+|.+||+|||.||++||
T Consensus 19 p~~~~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN 97 (135)
T 2yyn_A 19 PIDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFN 97 (135)
T ss_dssp HHHHHHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34567899999999999999999999997 799999999999999999999998 599999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcccC
Q psy16435 185 GLDNEYTDMVRRLQQIFRDAVSRYLDGER 213 (277)
Q Consensus 185 ~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 213 (277)
+++|.+|.+|..|+.+|+..+.++++...
T Consensus 98 ~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 126 (135)
T 2yyn_A 98 EPDSEVANAGIKLENYFEELLKNLYPEKR 126 (135)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999987653
No 25
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.95 E-value=1.6e-27 Score=198.46 Aligned_cols=106 Identities=25% Similarity=0.595 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHHH-HHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy16435 106 EEDLRIGMHKVMNR-LKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYN 184 (277)
Q Consensus 106 ~~~l~~~l~~il~~-l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN 184 (277)
...|...|..|+.. |+.++.+++|..||++..+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 27 ~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN 106 (158)
T 3uv4_A 27 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN 106 (158)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34555566666554 67789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcc
Q psy16435 185 GLDNEYTDMVRRLQQIFRDAVSRYLDG 211 (277)
Q Consensus 185 ~~~s~i~~~A~~L~~~f~~~~~~~~~~ 211 (277)
+++|.+|.+|..|...|...+.++...
T Consensus 107 ~~~s~i~~~A~~L~~~~~~~l~e~~~~ 133 (158)
T 3uv4_A 107 GPESQYTKTAQEIVNVCYQTLTEYDEH 133 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988654
No 26
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.94 E-value=6.2e-27 Score=188.95 Aligned_cols=103 Identities=28% Similarity=0.402 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcC
Q psy16435 106 EEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNG 185 (277)
Q Consensus 106 ~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~ 185 (277)
...|+..|..+++.|..++.+++|..||++..+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+
T Consensus 8 l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 87 (130)
T 3dai_A 8 FRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNP 87 (130)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHH----HHHHHHHHHHHHHHHHHh
Q psy16435 186 LDNEY----TDMVRRLQQIFRDAVSRY 208 (277)
Q Consensus 186 ~~s~i----~~~A~~L~~~f~~~~~~~ 208 (277)
++|++ +.+|..|...+...+..-
T Consensus 88 ~~s~~~~~i~~~A~~L~~~~~~~i~~e 114 (130)
T 3dai_A 88 DRDPGDRLIRHRACALRDTAYAIIKEE 114 (130)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99976 677888888888777633
No 27
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.94 E-value=2.7e-27 Score=199.87 Aligned_cols=103 Identities=38% Similarity=0.723 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcC
Q psy16435 106 EEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNG 185 (277)
Q Consensus 106 ~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~ 185 (277)
.......|..||..|..++.+++|..||++..+|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||+
T Consensus 70 ~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 149 (174)
T 2ri7_A 70 TEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNP 149 (174)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q psy16435 186 LDNEYTDMVRRLQQIFRDAVSRY 208 (277)
Q Consensus 186 ~~s~i~~~A~~L~~~f~~~~~~~ 208 (277)
++|.+|.+|..|+++|++.+..+
T Consensus 150 ~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 150 SDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999988765
No 28
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.94 E-value=9e-27 Score=192.39 Aligned_cols=103 Identities=19% Similarity=0.308 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHcCCC-------CCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhh
Q psy16435 110 RIGMHKVMNRLKSHED-------AWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRK 182 (277)
Q Consensus 110 ~~~l~~il~~l~~~~~-------s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~ 182 (277)
...|..|++.|..... +.+|..||+...+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++
T Consensus 26 ~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 105 (150)
T 3tlp_A 26 KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARH 105 (150)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5677888888876544 899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHhhccc
Q psy16435 183 YNGLDNEYTDMVRRLQQIFRDAVSRYLDGE 212 (277)
Q Consensus 183 YN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 212 (277)
||+++|.+|.+|..|+++|...+.++.+..
T Consensus 106 yN~~~s~i~~~A~~L~~~f~~~~~~l~~~p 135 (150)
T 3tlp_A 106 YNEEGSQVYNDAHILEKLLKEKRKELGPLP 135 (150)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999997543
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.94 E-value=1.7e-26 Score=196.77 Aligned_cols=107 Identities=30% Similarity=0.503 Sum_probs=100.8
Q ss_pred CCChHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhh
Q psy16435 103 RSTEEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDA--GRYKTFGQFRADFQLIVDNC 180 (277)
Q Consensus 103 ~~~~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~--~~Y~s~~~f~~Dv~lm~~Na 180 (277)
......++..|..||..|..++.+++|..||+. .+|+||++|++||||+||++||.+ |.|.++.+|.+||+|||.||
T Consensus 76 ~~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na 154 (184)
T 3o36_A 76 VKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNC 154 (184)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhchhhhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 345567889999999999999999999999995 599999999999999999999998 79999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHhhc
Q psy16435 181 RKYNGLDNEYTDMVRRLQQIFRDAVSRYLD 210 (277)
Q Consensus 181 ~~YN~~~s~i~~~A~~L~~~f~~~~~~~~~ 210 (277)
++||+++|.||.+|..|+++|++.+.++++
T Consensus 155 ~~yN~~~s~v~~~a~~L~~~f~~~~~~~~P 184 (184)
T 3o36_A 155 AEFNEPDSEVANAGIKLENYFEELLKNLYP 184 (184)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999998864
No 30
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=180.88 Aligned_cols=101 Identities=30% Similarity=0.428 Sum_probs=93.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy16435 105 TEEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYN 184 (277)
Q Consensus 105 ~~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN 184 (277)
+..+|+..|..||+.|..++.+++|..| +||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 9 ~~~~L~~~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN 83 (131)
T 2dkw_A 9 TLRELRLFLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYN 83 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4568899999999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred CCCCH----HHHHHHHHHHHHHHHHHHhhc
Q psy16435 185 GLDNE----YTDMVRRLQQIFRDAVSRYLD 210 (277)
Q Consensus 185 ~~~s~----i~~~A~~L~~~f~~~~~~~~~ 210 (277)
+++|+ ++.+|..|...|...+..-+.
T Consensus 84 ~~~s~~~~~i~~~A~~L~~~~~~~l~~~l~ 113 (131)
T 2dkw_A 84 PDKDPGDKIIRHRACTLKDTAHAIIAAELD 113 (131)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99995 578999999999988865443
No 31
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.93 E-value=2e-25 Score=200.42 Aligned_cols=104 Identities=25% Similarity=0.510 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcC
Q psy16435 106 EEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNG 185 (277)
Q Consensus 106 ~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~ 185 (277)
...|...|..||..|..++.+++|..||++..+||||.+|++||||+||++||.+|.|.++.+|..||+|||.||++||+
T Consensus 12 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 91 (265)
T 3uv5_A 12 MVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNG 91 (265)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhh
Q psy16435 186 LDNEYTDMVRRLQQIFRDAVSRYL 209 (277)
Q Consensus 186 ~~s~i~~~A~~L~~~f~~~~~~~~ 209 (277)
++|.+|.+|..|...|...+.++.
T Consensus 92 ~~s~i~~~A~~l~~~~~~~~~~~~ 115 (265)
T 3uv5_A 92 PKHSLTQISQSMLDLCDEKLKEKE 115 (265)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 32
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.92 E-value=4e-25 Score=191.69 Aligned_cols=107 Identities=29% Similarity=0.505 Sum_probs=101.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhhh
Q psy16435 105 TEEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDA---GRYKTFGQFRADFQLIVDNCR 181 (277)
Q Consensus 105 ~~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~---~~Y~s~~~f~~Dv~lm~~Na~ 181 (277)
.....+..|..||..|..++.+++|..||+. .+|+||++|++||||+||++||.+ |.|.++.+|..||+|||.||+
T Consensus 78 ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~ 156 (207)
T 3u5n_A 78 LSPVDQRKCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCE 156 (207)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999996 799999999999999999999997 799999999999999999999
Q ss_pred hhcC-----------------CCCHHHHHHHHHHHHHHHHHHHhhccc
Q psy16435 182 KYNG-----------------LDNEYTDMVRRLQQIFRDAVSRYLDGE 212 (277)
Q Consensus 182 ~YN~-----------------~~s~i~~~A~~L~~~f~~~~~~~~~~~ 212 (277)
+||+ ++|.++.+|..|+.+|+..+.+++++.
T Consensus 157 ~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~~ 204 (207)
T 3u5n_A 157 RFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSDR 204 (207)
T ss_dssp HHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999 999999999999999999999998764
No 33
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.92 E-value=1.1e-24 Score=195.51 Aligned_cols=105 Identities=26% Similarity=0.595 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHH-HHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcC
Q psy16435 107 EDLRIGMHKVMNR-LKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNG 185 (277)
Q Consensus 107 ~~l~~~l~~il~~-l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~ 185 (277)
..+...|..++.. |..++.+++|..||+...+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+
T Consensus 135 ~~~~~il~~i~~~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~ 214 (265)
T 3uv5_A 135 VAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 214 (265)
T ss_dssp HHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 3456666666654 788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcc
Q psy16435 186 LDNEYTDMVRRLQQIFRDAVSRYLDG 211 (277)
Q Consensus 186 ~~s~i~~~A~~L~~~f~~~~~~~~~~ 211 (277)
++|.+|.+|..|...|...+.++...
T Consensus 215 ~~s~~~~~A~~l~~~~~~~~~~~~~~ 240 (265)
T 3uv5_A 215 PESQYTKTAQEIVNVCYQTLTEYDEH 240 (265)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988644
No 34
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.92 E-value=4.1e-25 Score=189.03 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhcc--CCCcHHHHHHHHhCC---CCCCHHHHHHHHHHHHHhhh
Q psy16435 107 EDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIK--RPMDLTRMEEKLDAG---RYKTFGQFRADFQLIVDNCR 181 (277)
Q Consensus 107 ~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk--~PmdL~tI~~kl~~~---~Y~s~~~f~~Dv~lm~~Na~ 181 (277)
..-+..|..||..|..|+.++||++||+ |+||.+|+ +||||+||++||.++ .|.++++|++||+|||+||+
T Consensus 75 ~~~~~~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~ 150 (189)
T 2ro1_A 75 PANQRKCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFN 150 (189)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHH
Confidence 3445679999999999999999999999 78999998 899999999999999 99999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHhhcccCC
Q psy16435 182 KYNGLDNEYTDMVRRLQQIFRDAVSRYLDGERS 214 (277)
Q Consensus 182 ~YN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 214 (277)
+|| +++.+|.+|..|+++|+..|.++++....
T Consensus 151 ~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~~~ 182 (189)
T 2ro1_A 151 KLT-EDKADVQSIIGLQRFFETRMNEAFGDTKF 182 (189)
T ss_dssp HHC-CSSCSSHHHHHHHHHHHHHHHHHTTTSCS
T ss_pred HHC-CCCHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 999 58889999999999999999999886543
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.91 E-value=2.3e-24 Score=196.00 Aligned_cols=103 Identities=25% Similarity=0.524 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcC
Q psy16435 106 EEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNG 185 (277)
Q Consensus 106 ~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~ 185 (277)
...|...|..||+.|+.++.+++|+.||++..+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+
T Consensus 45 ~~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 124 (292)
T 3aad_A 45 MVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNG 124 (292)
T ss_dssp HHHHHHHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcC
Confidence 36678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q psy16435 186 LDNEYTDMVRRLQQIFRDAVSRY 208 (277)
Q Consensus 186 ~~s~i~~~A~~L~~~f~~~~~~~ 208 (277)
++|.++.+|..|..+|...+..+
T Consensus 125 ~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 125 PKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp SSSHHHHHHTHHHHTTTTTGGGS
T ss_pred CchHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999998777653
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.90 E-value=5.3e-24 Score=193.58 Aligned_cols=103 Identities=26% Similarity=0.621 Sum_probs=94.1
Q ss_pred HHHHHHHHHHH-HHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCC
Q psy16435 108 DLRIGMHKVMN-RLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGL 186 (277)
Q Consensus 108 ~l~~~l~~il~-~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~ 186 (277)
.+...|..++. .|+.++.+++|..||+...+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||++
T Consensus 169 ~~~~~l~~i~~~~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~ 248 (292)
T 3aad_A 169 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGP 248 (292)
T ss_dssp HHHHHHHHHHHHTGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhhhhhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34445555554 47889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhc
Q psy16435 187 DNEYTDMVRRLQQIFRDAVSRYLD 210 (277)
Q Consensus 187 ~s~i~~~A~~L~~~f~~~~~~~~~ 210 (277)
+|.+|.+|..|+..|...+..+..
T Consensus 249 ~s~i~~~A~~L~~~~~~~~~~~~~ 272 (292)
T 3aad_A 249 ESQYTKTAQEIVNVCYQTLTEYDE 272 (292)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988754
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.89 E-value=1.9e-23 Score=191.37 Aligned_cols=87 Identities=24% Similarity=0.429 Sum_probs=84.0
Q ss_pred cCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHH
Q psy16435 122 SHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIF 201 (277)
Q Consensus 122 ~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~i~~~A~~L~~~f 201 (277)
.+..+++|+.||+...+||||+||++||||+||++||.+|.|.++.+|..||+|||.||++||+++|.+|.+|..|+.+|
T Consensus 177 ~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f 256 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYF 256 (311)
T ss_dssp SSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy16435 202 RDAVSRY 208 (277)
Q Consensus 202 ~~~~~~~ 208 (277)
+..+.+.
T Consensus 257 ~~~~~~~ 263 (311)
T 2r0y_A 257 NYLIQKE 263 (311)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999974
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.88 E-value=3.7e-23 Score=193.18 Aligned_cols=86 Identities=24% Similarity=0.434 Sum_probs=83.6
Q ss_pred CCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Q psy16435 123 HEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFR 202 (277)
Q Consensus 123 ~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~~~s~i~~~A~~L~~~f~ 202 (277)
+..+++|+.||+...+||||+||++||||+||++||.+|.|.++.+|..||+|||.||++||+++|.||.+|..|+.+|+
T Consensus 228 ~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~ 307 (361)
T 2r10_A 228 VKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 307 (361)
T ss_dssp SCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q psy16435 203 DAVSRY 208 (277)
Q Consensus 203 ~~~~~~ 208 (277)
..+.+.
T Consensus 308 ~~~~~~ 313 (361)
T 2r10_A 308 YLIQKE 313 (361)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999973
No 39
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.85 E-value=4.4e-21 Score=156.17 Aligned_cols=101 Identities=19% Similarity=0.344 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHcCCC------CCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q psy16435 108 DLRIGMHKVMNRLKSHED------AWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCR 181 (277)
Q Consensus 108 ~l~~~l~~il~~l~~~~~------s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~ 181 (277)
.++..+..|++.|..+.+ +.+|+..|+.. |+||. +.||+|.+|++||.+|.|.++++|..||.+||.||+
T Consensus 7 ~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NAr 82 (147)
T 3iu6_A 7 LIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERAR 82 (147)
T ss_dssp HHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 678889999999998765 67999999987 89998 999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHhhccc
Q psy16435 182 KYNGLDNEYTDMVRRLQQIFRDAVSRYLDGE 212 (277)
Q Consensus 182 ~YN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 212 (277)
.||.++|+||.+|..|+++|.....++....
T Consensus 83 ~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~g 113 (147)
T 3iu6_A 83 RMNRTDSEIYEDAVELQQFFIKIRDELCKNG 113 (147)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999997764
No 40
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.85 E-value=9.2e-22 Score=183.71 Aligned_cols=99 Identities=18% Similarity=0.294 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHcC--CCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhhhhhc
Q psy16435 108 DLRIGMHKVMNRLKSH--EDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYK-TFGQFRADFQLIVDNCRKYN 184 (277)
Q Consensus 108 ~l~~~l~~il~~l~~~--~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~-s~~~f~~Dv~lm~~Na~~YN 184 (277)
.|...|..+|+.+... ..+++|+.||+...+||||+||++||||+||++|| +.|. ++.+|..||+|||.||++||
T Consensus 78 ~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN 155 (361)
T 2r10_A 78 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYN 155 (361)
T ss_dssp THHHHHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcC
Confidence 4567888899888654 34799999999999999999999999999999998 4454 89999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Q psy16435 185 GLDNEYTDMVRRLQQIFRDAVSRY 208 (277)
Q Consensus 185 ~~~s~i~~~A~~L~~~f~~~~~~~ 208 (277)
+++|.||.+|..|+++|...|.+.
T Consensus 156 ~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 156 EYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999988765
No 41
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.84 E-value=1.4e-21 Score=178.97 Aligned_cols=99 Identities=18% Similarity=0.294 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHc--CCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhhhhhc
Q psy16435 108 DLRIGMHKVMNRLKS--HEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYK-TFGQFRADFQLIVDNCRKYN 184 (277)
Q Consensus 108 ~l~~~l~~il~~l~~--~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~-s~~~f~~Dv~lm~~Na~~YN 184 (277)
.|...|..+|..+.. ...+++|+.||+...+||||+||++||||+||++|| +.|. ++.+|..||+|||.||++||
T Consensus 28 ~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN 105 (311)
T 2r0y_A 28 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYN 105 (311)
T ss_dssp THHHHHHHHHHHHHHHSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHcc
Confidence 445555566666654 235899999999999999999999999999999998 4555 89999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Q psy16435 185 GLDNEYTDMVRRLQQIFRDAVSRY 208 (277)
Q Consensus 185 ~~~s~i~~~A~~L~~~f~~~~~~~ 208 (277)
+++|.||.+|..|+++|...|.+.
T Consensus 106 ~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 106 EYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999988765
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.65 E-value=2.3e-16 Score=133.67 Aligned_cols=98 Identities=19% Similarity=0.326 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcchhhhccCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcC
Q psy16435 106 EEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNG 185 (277)
Q Consensus 106 ~~~l~~~l~~il~~l~~~~~s~~F~~pv~~~~~PdYy~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~ 185 (277)
...|+..|..||..|..++.++||+.. .++.||||+||++||++|.|.|+.+|+.||.|||.||..||.
T Consensus 73 ~~el~~~l~~vl~~L~~~~~s~~~~~y-----------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~ 141 (183)
T 3lqh_A 73 EKELQISLKQVLTALLNSRTTSHLLRY-----------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDG 141 (183)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHTC-----------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhccccHhhhhh-----------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccC
Confidence 457788899999999999999999873 259999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcccCC
Q psy16435 186 LDNEYTDMVRRLQQIFRDAVSRYLDGERS 214 (277)
Q Consensus 186 ~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 214 (277)
+++.+..++..|..+|.+.++++++....
T Consensus 142 ~~~e~~~ag~~l~~~f~~~l~~vfpwf~~ 170 (183)
T 3lqh_A 142 GQPEIKKANSMVKSFFIRQMERVFPWFSV 170 (183)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCTTSCG
T ss_pred CChhhhhhhhHHHHHHHHHHHHHCCCCCc
Confidence 99999999999999999999999987643
No 43
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=36.81 E-value=27 Score=27.19 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=29.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy16435 152 TRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYN 184 (277)
Q Consensus 152 ~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN 184 (277)
+.|..||....|.|+++|...|++-+.|.-.+-
T Consensus 33 ~qIAdkLRGr~F~sFd~FR~afW~eVs~DpeL~ 65 (131)
T 2jb0_B 33 DRIANKLRDKEFKSFDDFRKKFWEEVSKDPELS 65 (131)
T ss_dssp HHHHHHHTTCEESSHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHcCCcCCCHHHHHHHHHHHHhcCHHHH
Confidence 679999999999999999999999988876553
No 44
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=36.72 E-value=27 Score=27.30 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=29.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcC
Q psy16435 152 TRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYNG 185 (277)
Q Consensus 152 ~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN~ 185 (277)
+.|..||....|.|+++|...|++-+.|.-.+-.
T Consensus 36 ~~IAdkLRGr~F~sFd~FR~afW~eVs~DpeL~~ 69 (134)
T 1fr2_B 36 DRIADKLRDKEFKSFDDFRKAVWEEVSKDPELSK 69 (134)
T ss_dssp HHHHHHHTTCEESSHHHHHHHHHHHHHHCHHHHT
T ss_pred HHHHHHhcCCcCCCHHHHHHHHHHHHhcCHHHHH
Confidence 6799999999999999999999999888765533
No 45
>1pp5_A Microcin J25; lariat, protoknot, backbone-sidechain amide linkage, structu genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: j.5.1.1 PDB: 1q71_A
Probab=27.79 E-value=9.2 Score=20.59 Aligned_cols=15 Identities=27% Similarity=0.747 Sum_probs=13.1
Q ss_pred CCcchhhhccCCCcH
Q psy16435 137 TAPNYYEQIKRPMDL 151 (277)
Q Consensus 137 ~~PdYy~iIk~PmdL 151 (277)
-+|.||--|-.||+|
T Consensus 5 hvpeyfvgigtpisf 19 (26)
T 1pp5_A 5 HVPEYFVGIGTPISF 19 (26)
T ss_dssp SEECCCSSSSCCCSE
T ss_pred cCcceeEecCCCeEE
Confidence 479999999999986
No 46
>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1
Probab=25.99 E-value=57 Score=27.08 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy16435 152 TRMEEKLDAGRYKTFGQFRADFQLIVDNCRKYN 184 (277)
Q Consensus 152 ~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na~~YN 184 (277)
+.|..||....|.+++.|...|++-+.|.-.|-
T Consensus 108 sqIADKLRGR~F~sFD~FR~AFWkeVa~DPeLs 140 (206)
T 7cei_B 108 DRIANKLRDKEFKSFDDFRKKFWEEVSKDPELS 140 (206)
T ss_dssp HHHHHHHTTCBCSSHHHHHHHHHHHHTTCTTTG
T ss_pred HHHHHHhcCCcCCCHHHHHHHHHHHHccCHHHH
Confidence 689999999999999999999999998865553
No 47
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=25.02 E-value=86 Score=22.41 Aligned_cols=29 Identities=10% Similarity=0.220 Sum_probs=24.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q psy16435 152 TRMEEKLDAGRYKTFGQFRADFQLIVDNC 180 (277)
Q Consensus 152 ~tI~~kl~~~~Y~s~~~f~~Dv~lm~~Na 180 (277)
..|...+..|.|.|..+++.|.-..+..-
T Consensus 16 ~~i~~~V~sG~Y~s~SEviR~~lR~l~~r 44 (88)
T 3kxe_C 16 AFIDSQVADGRYGSASEVIRAGLRLLEEN 44 (88)
T ss_dssp HHHHHHHTTTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 46889999999999999999976666553
Done!