RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16435
(277 letters)
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 97.4 bits (242), Expect = 7e-26
Identities = 27/105 (25%), Positives = 49/105 (46%)
Query: 106 EEDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKT 165
L + ++N ++ + +PF PV+ +YY+ I RPMDL + E + Y +
Sbjct: 24 MVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPS 83
Query: 166 FGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSRYLD 210
+FR +LIV N YNG + T + + + + + + D
Sbjct: 84 REEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKED 128
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 111
Score = 92.7 bits (230), Expect = 1e-24
Identities = 35/91 (38%), Positives = 56/91 (61%)
Query: 113 MHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRAD 172
+ ++ L++H AWPF PV++ P+YY+ IK PMDL+ ME KL++ +Y+ F D
Sbjct: 8 IQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYD 67
Query: 173 FQLIVDNCRKYNGLDNEYTDMVRRLQQIFRD 203
+L+ +NCR YNG + Y RL++ F +
Sbjct: 68 ARLVFNNCRMYNGENTSYYKYANRLEKFFNN 98
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 102
Score = 92.0 bits (228), Expect = 2e-24
Identities = 38/95 (40%), Positives = 58/95 (61%)
Query: 107 EDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTF 166
+ L + ++ ++KSH AWPF +PV ++ AP+YYE I+ P+DL M E+L + Y T
Sbjct: 1 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTR 60
Query: 167 GQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIF 201
F AD Q ++ NCR+YN D+EY L++ F
Sbjct: 61 KLFVADLQRVIANCREYNPPDSEYCRCASALEKFF 95
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 92.7 bits (230), Expect = 3e-24
Identities = 28/95 (29%), Positives = 52/95 (54%)
Query: 116 VMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTFGQFRADFQL 175
V ++ + D+WPF PV++ P+YY+ I PMDL + + + +Y++ F D L
Sbjct: 18 VTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 77
Query: 176 IVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSRYLD 210
I+ N KYNG +++YT + + + ++ Y +
Sbjct: 78 ILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDE 112
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 90.4 bits (224), Expect = 1e-23
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 105 TEEDLRIGMHKVMNRLKSH-EDAWPFCDPVD--EATAPNYYEQIKRPMDLTRMEEKLDAG 161
E+LR + + L ++ PF PVD P+Y++ +K PMDL+ ++ KLD G
Sbjct: 3 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTG 62
Query: 162 RYKTFGQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRDAVSRYL 209
+Y+ Q+ D L+ +N YN + +L ++F + +
Sbjct: 63 QYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVM 110
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase
bromodomain {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 89.7 bits (222), Expect = 2e-23
Identities = 36/97 (37%), Positives = 54/97 (55%)
Query: 107 EDLRIGMHKVMNRLKSHEDAWPFCDPVDEATAPNYYEQIKRPMDLTRMEEKLDAGRYKTF 166
+ L + ++ ++KSH+ AWPF +PV AP YYE I+ PMDL M E+L Y +
Sbjct: 12 DQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSK 71
Query: 167 GQFRADFQLIVDNCRKYNGLDNEYTDMVRRLQQIFRD 203
F AD Q + NC++YN ++EY L++ F
Sbjct: 72 KLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFS 108
>d1rh1a1 b.110.1.1 (A:10-312) Colicin B N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 303
Score = 27.7 bits (61), Expect = 1.8
Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 39 EEETRRHQEEEERLEEEWRKHK 60
++R QE E ++++R K
Sbjct: 283 NSLSQR-QEAENNAKDDFRVKK 303
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 27.0 bits (59), Expect = 2.3
Identities = 7/53 (13%), Positives = 23/53 (43%)
Query: 22 EKLKHSKEIERKLQKQKEEETRRHQEEEERLEEEWRKHKAARERQRRIENRER 74
+K + +E ++L ++ E + + +E+ER + + ++ +
Sbjct: 236 QKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRI 288
Score = 25.5 bits (55), Expect = 8.5
Identities = 9/49 (18%), Positives = 24/49 (48%)
Query: 20 RIEKLKHSKEIERKLQKQKEEETRRHQEEEERLEEEWRKHKAARERQRR 68
+ K + + L++Q+ + QE+E+ L+E ++K + + +
Sbjct: 246 KQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQ 294
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 25.8 bits (56), Expect = 5.4
Identities = 7/55 (12%), Positives = 21/55 (38%)
Query: 22 EKLKHSKEIERKLQKQKEEETRRHQEEEERLEEEWRKHKAARERQRRIENRERGS 76
E + + + + + Q+ + R+ + ++ A R + +RG+
Sbjct: 225 EAWQTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEAIRAASLDRGA 279
Score = 25.8 bits (56), Expect = 5.4
Identities = 6/67 (8%), Positives = 23/67 (34%)
Query: 17 QSTRIEKLKHSKEIERKLQKQKEEETRRHQEEEERLEEEWRKHKAARERQRRIENRERGS 76
+ + ++ ++ + E + ++ +E W+ A +R + +
Sbjct: 188 IADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLA 247
Query: 77 RSNSEDR 83
+ + R
Sbjct: 248 PQDRDAR 254
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 26.1 bits (56), Expect = 5.8
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 22 EKLKHSKEIERKLQKQKEEETRRHQEEE-ERLEEE 55
K +++ + KE+ R+ +EE E +++E
Sbjct: 330 VSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
disjunctional) {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 368
Score = 26.0 bits (56), Expect = 5.9
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 34 LQKQKEEETRRHQEEEERLEEEWRKHKAARERQRRIEN 71
L+++ EE R ++++ LE + + ++ + N
Sbjct: 1 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHN 38
>d1iyba_ d.124.1.1 (A:) RNase NW {Nicotiana glutinosa [TaxId:
35889]}
Length = 208
Score = 25.1 bits (54), Expect = 9.7
Identities = 8/46 (17%), Positives = 14/46 (30%)
Query: 14 SSCQSTRIEKLKHSKEIERKLQKQKEEETRRHQEEEERLEEEWRKH 59
S+C S ++ ++Q+ EW KH
Sbjct: 56 SNCDSNSPYDQSQVSDLISRMQQNWPTLACPSGTGSAFWSHEWEKH 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.129 0.369
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,076,663
Number of extensions: 51559
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 73
Length of query: 277
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,254,276
Effective search space: 242075268
Effective search space used: 242075268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.3 bits)