BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16436
         (94 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
           Adenylation And Pcp Domains
 pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
           Adenylation And Pcp Domains Bound To Vinylsulfonamide
           Inhibitor
          Length = 620

 Score = 26.6 bits (57), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 61  LSVEANSPKGWVKLLESSHCCITKQAGPVPPGIF 94
           LS +A + + W  LL    CC+    GP+ PG+ 
Sbjct: 213 LSFDAATLEIWGALLNGG-CCVLNDLGPLDPGVL 245


>pdb|2FCR|A Chain A, Crystal Structure Of Oxidized Flavodoxin From A Red Alga
           Chondrus Crispus Refined At 1.8 Angstroms Resolution:
           Description Of The Flavin Mononucleotide Binding Site
          Length = 173

 Score = 25.8 bits (55), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 40  YPKVDGEDMLPIPCTNIAIVGLSVEANSPKGWVKLLESSHCCITKQ-AGPV 89
           Y K+   DM  +P   +AI GL      P  +   +E  H C  KQ A PV
Sbjct: 74  YDKLPEVDMKDLP---VAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPV 121


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.139    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,959,021
Number of Sequences: 62578
Number of extensions: 108209
Number of successful extensions: 183
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 4
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)