BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16436
         (94 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9BXF3|CECR2_HUMAN Cat eye syndrome critical region protein 2 OS=Homo sapiens GN=CECR2
           PE=1 SV=2
          Length = 1484

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 29/35 (82%)

Query: 5   VYNLESDSLRLQPLGYDRNQSAFWYFYGTRLYRED 39
           +  L++DSLR++PLG D + + +WYFYGTR+Y+ED
Sbjct: 134 LKGLDADSLRVEPLGEDNSGALYWYFYGTRMYKED 168


>sp|Q54ST3|Y2237_DICDI DDT domain-containing protein DDB_G0282237 OS=Dictyostelium
           discoideum GN=DDB_G0282237 PE=3 SV=1
          Length = 885

 Score = 33.5 bits (75), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 8   LESDSLRLQPLGYDRNQSAFWYFYG--TRLYRED 39
           LE  S RL+ LG DRN   +WY+Y   +++Y E+
Sbjct: 767 LEKYSTRLESLGRDRNYRNYWYWYQLPSKIYVEN 800


>sp|Q96T23|RSF1_HUMAN Remodeling and spacing factor 1 OS=Homo sapiens GN=RSF1 PE=1 SV=2
          Length = 1441

 Score = 33.5 bits (75), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 4/41 (9%)

Query: 9   ESDSLRLQPLGYDRNQSAFWYF----YGTRLYREDYPKVDG 45
           ++D++RLQP+G D++   +WY     +  R+Y E+    DG
Sbjct: 145 DADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQDDQDG 185


>sp|Q488Q3|RLMG_COLP3 Ribosomal RNA large subunit methyltransferase G OS=Colwellia
           psychrerythraea (strain 34H / ATCC BAA-681) GN=rlmG PE=3
           SV=1
          Length = 392

 Score = 30.0 bits (66), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 32  GTRLYREDYPKVDGED-MLPIPCTNIAIVGLSVEANSPKGWVKLLESSHCCIT 83
           G R + E+ P V     ++ + C N  ++GL+V AN P+  V+ ++ S   I+
Sbjct: 233 GARYFIENLPTVAANSTVIDLGCGN-GVIGLTVLANQPEAHVQFIDESTMAIS 284


>sp|A8ERP6|SYS_ARCB4 Serine--tRNA ligase OS=Arcobacter butzleri (strain RM4018) GN=serS
           PE=3 SV=1
          Length = 412

 Score = 29.6 bits (65), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 36  YREDYPKVDGEDMLPIPCTNIAIVGLSVEANSPKGWVKLLESSHC-CITKQAG 87
           + +D  K++GED+  IP   +++  L  +    K  + LL +S+  C  K+AG
Sbjct: 211 FADDLFKIEGEDLYLIPTAEVSLTNLYNDEIIDKSELPLLLTSYTPCFRKEAG 263


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.139    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,867,741
Number of Sequences: 539616
Number of extensions: 1365982
Number of successful extensions: 2267
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2264
Number of HSP's gapped (non-prelim): 7
length of query: 94
length of database: 191,569,459
effective HSP length: 64
effective length of query: 30
effective length of database: 157,034,035
effective search space: 4711021050
effective search space used: 4711021050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)