Query psy16436
Match_columns 94
No_of_seqs 32 out of 34
Neff 1.8
Searched_HMMs 29240
Date Fri Aug 16 21:14:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fgl_B HIV-1 GAG protein; cycl 43.9 7.6 0.00026 21.0 0.8 10 84-93 6-15 (26)
2 1gff_3 Bacteriophage G4 capsid 36.6 20 0.00068 19.7 1.8 17 19-35 9-25 (26)
3 3jtz_A Integrase; four strande 30.5 25 0.00085 21.9 1.8 15 13-32 28-42 (88)
4 3ju0_A Phage integrase; four s 28.3 28 0.00096 22.6 1.8 14 13-31 28-41 (108)
5 4g06_A Uncharacterized protein 22.9 97 0.0033 20.3 3.6 30 45-76 6-35 (79)
6 2l6o_A Uncharacterized protein 20.4 18 0.00061 24.7 -0.4 9 77-85 89-97 (114)
7 1m06_J J protein, small core p 16.6 15 0.00051 20.2 -1.2 17 19-35 8-24 (26)
8 2l3a_A Uncharacterized protein 14.8 1.8E+02 0.0062 19.2 3.5 27 48-76 4-30 (82)
9 4fu0_A D-alanine--D-alanine li 14.4 1.2E+02 0.004 21.7 2.7 24 4-27 27-50 (357)
10 3lwb_A D-alanine--D-alanine li 14.0 1.2E+02 0.0041 22.2 2.7 25 3-27 33-57 (373)
No 1
>1fgl_B HIV-1 GAG protein; cyclophilin, binding protein for cyclosporin A, AIDS, isomer peptide complex; 1.80A {Human immunodeficiency virus type 1}
Probab=43.86 E-value=7.6 Score=20.98 Aligned_cols=10 Identities=50% Similarity=1.059 Sum_probs=7.8
Q ss_pred eccCCCCCCC
Q psy16436 84 KQAGPVPPGI 93 (94)
Q Consensus 84 ~~~~~~~~~~ 93 (94)
-||||+|||-
T Consensus 6 ~~agp~p~gq 15 (26)
T 1fgl_B 6 VHAGPIAPGQ 15 (26)
T ss_pred ccCCCCCCCC
Confidence 3689999983
No 2
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=36.57 E-value=20 Score=19.65 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=13.8
Q ss_pred eecCCCceEEEEeeeee
Q psy16436 19 GYDRNQSAFWYFYGTRL 35 (94)
Q Consensus 19 G~D~ngs~YWYFyGTRL 35 (94)
+.-++|+-.||-.||..
T Consensus 9 ~~r~kgarlwyvggtq~ 25 (26)
T 1gff_3 9 GGKSKGARLWYVGGTQY 25 (26)
T ss_pred CCCCCceEEEEecceec
Confidence 35678999999999863
No 3
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=30.53 E-value=25 Score=21.93 Aligned_cols=15 Identities=33% Similarity=0.700 Sum_probs=10.9
Q ss_pred eeeeeceecCCCceEEEEee
Q psy16436 13 LRLQPLGYDRNQSAFWYFYG 32 (94)
Q Consensus 13 LRvePLG~D~ngs~YWYFyG 32 (94)
|||.| +|+..|+|--
T Consensus 28 L~V~p-----sG~K~w~~ry 42 (88)
T 3jtz_A 28 LLVKP-----GGSRHWYLKY 42 (88)
T ss_dssp EEECT-----TSCEEEEEEE
T ss_pred EEEec-----CCCEEEEEEE
Confidence 56666 6789998853
No 4
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=28.26 E-value=28 Score=22.58 Aligned_cols=14 Identities=36% Similarity=0.823 Sum_probs=10.7
Q ss_pred eeeeeceecCCCceEEEEe
Q psy16436 13 LRLQPLGYDRNQSAFWYFY 31 (94)
Q Consensus 13 LRvePLG~D~ngs~YWYFy 31 (94)
|||.| +|+.+|+|-
T Consensus 28 L~V~p-----sG~K~w~~r 41 (108)
T 3ju0_A 28 LLVHP-----NGSKYWRLS 41 (108)
T ss_dssp EEECT-----TSCEEEEEE
T ss_pred EEEEc-----CCCEEEEEE
Confidence 66666 678999885
No 5
>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}
Probab=22.88 E-value=97 Score=20.33 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=16.6
Q ss_pred CCCccccceeEEEEEEeeeeecCccceeeeee
Q psy16436 45 GEDMLPIPCTNIAIVGLSVEANSPKGWVKLLE 76 (94)
Q Consensus 45 ~~~~l~l~c~~i~iv~ls~~~~~~~~~~~~~~ 76 (94)
.++|-.++.-.+--++.-|+ +++||.|-|-
T Consensus 6 ~~~ma~~~yEI~e~igvLS~--~~~GW~KELN 35 (79)
T 4g06_A 6 EKKMAEFTFEIEEHLLTLSE--NEKGWTKEIN 35 (79)
T ss_dssp ------CCEEEEEEEEEEEC--CTTSCEEEEE
T ss_pred hcccCcceeEEeEEEEEecc--CCCCceEEEE
Confidence 45677777777665554443 6899999774
No 6
>2l6o_A Uncharacterized protein YP_926445.1; structural genomics, PSI-biology, protein structure initiati center for structural genomics, JCSG; NMR {Shewanella amazonensis}
Probab=20.35 E-value=18 Score=24.66 Aligned_cols=9 Identities=44% Similarity=1.125 Sum_probs=7.1
Q ss_pred ccceEeeec
Q psy16436 77 SSHCCITKQ 85 (94)
Q Consensus 77 ~~~~~~~~~ 85 (94)
..|||++|-
T Consensus 89 ~g~cC~~KI 97 (114)
T 2l6o_A 89 LGHCCTSKM 97 (114)
T ss_dssp HTCCCSSSS
T ss_pred hCceehhhh
Confidence 369999984
No 7
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=16.64 E-value=15 Score=20.18 Aligned_cols=17 Identities=24% Similarity=0.645 Sum_probs=13.5
Q ss_pred eecCCCceEEEEeeeee
Q psy16436 19 GYDRNQSAFWYFYGTRL 35 (94)
Q Consensus 19 G~D~ngs~YWYFyGTRL 35 (94)
+.-++|+-.||-.||..
T Consensus 8 ~~r~kgarlwyvggtq~ 24 (26)
T 1m06_J 8 PSRRKGARLWYVGGSQF 24 (26)
T ss_dssp CCCCSSSCCCCSSSCCC
T ss_pred CCcCCceEEEEEcceEe
Confidence 45678999999988853
No 8
>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*
Probab=14.84 E-value=1.8e+02 Score=19.17 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=16.1
Q ss_pred ccccceeEEEEEEeeeeecCccceeeeee
Q psy16436 48 MLPIPCTNIAIVGLSVEANSPKGWVKLLE 76 (94)
Q Consensus 48 ~l~l~c~~i~iv~ls~~~~~~~~~~~~~~ 76 (94)
|-.++.-.+--++.-|+ +++||.|-|-
T Consensus 4 m~e~~yEI~e~igvLSe--~~kGW~KELN 30 (82)
T 2l3a_A 4 MAEFTFEIEEHLLTLSE--NEKGWTKEIN 30 (82)
T ss_dssp TTCCCEEEEEEEEEEEE--ETTTEEEEEE
T ss_pred cccceeEEeEEEEEecc--CCCCceEEEE
Confidence 44455555544444333 5799999774
No 9
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=14.41 E-value=1.2e+02 Score=21.73 Aligned_cols=24 Identities=17% Similarity=0.473 Sum_probs=20.0
Q ss_pred hhccCCCCceeeeeceecCCCceE
Q psy16436 4 AVYNLESDSLRLQPLGYDRNQSAF 27 (94)
Q Consensus 4 ~lk~LdaDsLRvePLG~D~ngs~Y 27 (94)
.++.|+.+-.++.|++.|++|..|
T Consensus 27 v~~aL~~~gy~v~~i~i~~~g~~~ 50 (357)
T 4fu0_A 27 VFENINTNKFDIIPIGITRSGEWY 50 (357)
T ss_dssp HHHHSCTTTEEEEEEEECTTCCEE
T ss_pred HHHHHhHhCCEEEEEEEeCCCcee
Confidence 467888888999999999998744
No 10
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=13.96 E-value=1.2e+02 Score=22.18 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=20.4
Q ss_pred hhhccCCCCceeeeeceecCCCceE
Q psy16436 3 LAVYNLESDSLRLQPLGYDRNQSAF 27 (94)
Q Consensus 3 ~~lk~LdaDsLRvePLG~D~ngs~Y 27 (94)
..++.|+.+--.|.|++.|.+|..|
T Consensus 33 ~v~~~l~~~~~~v~~i~i~~~g~w~ 57 (373)
T 3lwb_A 33 SILRNLDSRRFDVIAVGITPAGSWV 57 (373)
T ss_dssp HHHHHSCTTTEEEEEEEECTTCCEE
T ss_pred HHHHHhhhcCceEEEEEecCCCCeE
Confidence 3567889999999999999888643
Done!