Query psy16436
Match_columns 94
No_of_seqs 32 out of 34
Neff 1.8
Searched_HMMs 13730
Date Fri Aug 16 21:15:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16436.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16436hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b3aa_ d.9.1.1 (A:) RANTES (r 43.0 3.6 0.00027 23.4 0.8 17 76-92 5-21 (67)
2 d1e4ea1 c.30.1.2 (A:2-131) D-a 36.2 12 0.00089 22.8 2.6 27 4-32 26-52 (130)
3 d1egaa1 c.37.1.8 (A:4-182) GTP 24.6 12 0.00084 21.6 0.9 13 51-63 3-15 (179)
4 d1el0a_ d.9.1.1 (A:) CC chemok 21.0 12 0.00085 21.6 0.4 18 76-93 7-24 (74)
5 d1i8ka_ b.1.1.1 (A:) Immunoglo 20.7 16 0.0012 21.0 1.0 13 12-24 72-84 (106)
6 d2avue1 e.64.1.1 (E:5-160) Fla 17.1 10 0.00073 25.3 -0.6 18 34-51 38-55 (156)
7 d2cupa3 g.39.1.3 (A:8-34) Four 16.4 35 0.0026 17.4 1.6 14 16-29 6-23 (27)
8 d1x5ja1 b.1.2.1 (A:8-107) Neog 15.8 35 0.0026 17.7 1.6 55 6-61 11-68 (100)
9 d1iuka_ c.2.1.8 (A:) Hypotheti 15.3 16 0.0012 22.2 0.1 17 54-70 14-30 (136)
10 d1b50a_ d.9.1.1 (A:) Macrophag 14.8 28 0.0021 19.4 1.1 16 78-93 8-23 (69)
No 1
>d1b3aa_ d.9.1.1 (A:) RANTES (regulated upon activation, normal T-cell expressed and secreted) {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.03 E-value=3.6 Score=23.41 Aligned_cols=17 Identities=29% Similarity=0.847 Sum_probs=14.4
Q ss_pred eccceEeeeccCCCCCC
Q psy16436 76 ESSHCCITKQAGPVPPG 92 (94)
Q Consensus 76 ~~~~~~~~~~~~~~~~~ 92 (94)
+++.||..-..+++|+.
T Consensus 5 ~~~~CC~~~~~~~Ip~~ 21 (67)
T d1b3aa_ 5 DTTPCCFAYIARPLPRA 21 (67)
T ss_dssp BCEEEESCCCSSCCCGG
T ss_pred CCCCccCcccCCcCChh
Confidence 67889999988999864
No 2
>d1e4ea1 c.30.1.2 (A:2-131) D-alanine:D-lactate ligase VanA, N-domain {Enterococcus faecium [TaxId: 1352]}
Probab=36.16 E-value=12 Score=22.80 Aligned_cols=27 Identities=11% Similarity=0.293 Sum_probs=22.5
Q ss_pred hhccCCCCceeeeeceecCCCceEEEEee
Q psy16436 4 AVYNLESDSLRLQPLGYDRNQSAFWYFYG 32 (94)
Q Consensus 4 ~lk~LdaDsLRvePLG~D~ngs~YWYFyG 32 (94)
.++.|+.+...+.|++.|.+|. ||...
T Consensus 26 v~~~L~~~~y~v~~i~i~k~g~--w~~~~ 52 (130)
T d1e4ea1 26 IAANINKEKYEPLYIGITKSGV--WKMCE 52 (130)
T ss_dssp HHHHSCTTTEEEEEEEECTTSC--EEEES
T ss_pred HHHhhcccceeEEEEEecCCCc--EEecc
Confidence 5778999999999999999996 66543
No 3
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.57 E-value=12 Score=21.57 Aligned_cols=13 Identities=46% Similarity=0.483 Sum_probs=10.3
Q ss_pred cceeEEEEEEeee
Q psy16436 51 IPCTNIAIVGLSV 63 (94)
Q Consensus 51 l~c~~i~iv~ls~ 63 (94)
-||.+|+|+|.+.
T Consensus 3 ~~~~~I~iiG~~n 15 (179)
T d1egaa1 3 SYCGFIAIVGRPN 15 (179)
T ss_dssp CEEEEEEEECSSS
T ss_pred ccccEEEEECCCC
Confidence 3799999998763
No 4
>d1el0a_ d.9.1.1 (A:) CC chemokine I-309 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.02 E-value=12 Score=21.61 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=15.0
Q ss_pred eccceEeeeccCCCCCCC
Q psy16436 76 ESSHCCITKQAGPVPPGI 93 (94)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~ 93 (94)
.++.||..-..+++|+..
T Consensus 7 ~~s~CC~~~~~~~Ip~~~ 24 (74)
T d1el0a_ 7 PFSRCCFSFAEQEIPLRA 24 (74)
T ss_dssp SSCCCCSSCSCSCCCTTT
T ss_pred CcCCeeccccCCcCChhH
Confidence 478899998899999853
No 5
>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}
Probab=20.71 E-value=16 Score=21.04 Aligned_cols=13 Identities=0% Similarity=-0.100 Sum_probs=6.7
Q ss_pred ceeeeeceecCCC
Q psy16436 12 SLRLQPLGYDRNQ 24 (94)
Q Consensus 12 sLRvePLG~D~ng 24 (94)
+|++..+-.+..+
T Consensus 72 ~L~I~~~~~~Dsa 84 (106)
T d1i8ka_ 72 VFTIENTLSEDVG 84 (106)
T ss_dssp EEEESSCCGGGCE
T ss_pred eecccCCccccCE
Confidence 3666666554433
No 6
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}
Probab=17.05 E-value=10 Score=25.29 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=15.5
Q ss_pred eeeeecCCCCCCCCcccc
Q psy16436 34 RLYREDYPKVDGEDMLPI 51 (94)
Q Consensus 34 RLYrEdp~~~~~~~~l~l 51 (94)
|||||---.+..+||++.
T Consensus 38 rLykE~~g~sppkG~lP~ 55 (156)
T d2avue1 38 KLYKELRGSPPPKGMLPF 55 (156)
T ss_dssp HHHHHHSSSCCCCSCCCC
T ss_pred HHHHHHhCCCCCCCcCCC
Confidence 789998888888999875
No 7
>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.38 E-value=35 Score=17.44 Aligned_cols=14 Identities=36% Similarity=1.009 Sum_probs=9.3
Q ss_pred eeceecCC----CceEEE
Q psy16436 16 QPLGYDRN----QSAFWY 29 (94)
Q Consensus 16 ePLG~D~n----gs~YWY 29 (94)
.|+|.|++ ++-||.
T Consensus 6 kpigad~ke~h~knr~wh 23 (27)
T d2cupa3 6 KPIGADSKEVHYKNRFWH 23 (27)
T ss_dssp CBCCSSSCEEEETTEEEE
T ss_pred CCcCcchHHhhccccccc
Confidence 58888887 345553
No 8
>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.85 E-value=35 Score=17.67 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=25.9
Q ss_pred ccCCCCceeee---eceecCCCceEEEEeeeeeeeecCCCCCCCCccccceeEEEEEEe
Q psy16436 6 YNLESDSLRLQ---PLGYDRNQSAFWYFYGTRLYREDYPKVDGEDMLPIPCTNIAIVGL 61 (94)
Q Consensus 6 k~LdaDsLRve---PLG~D~ngs~YWYFyGTRLYrEdp~~~~~~~~l~l~c~~i~iv~l 61 (94)
.++.+.+++|. |...+.++..+.+.|--| |++.........+.....+.+.|-+|
T Consensus 11 ~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~-~~~~~~~~~~~~~~~~~~~~~~i~~L 68 (100)
T d1x5ja1 11 SILSHDTIRITWADNSLPKHQKITDSRYYTVR-WKTNIPANTKYKNANATTLSYLVTGL 68 (100)
T ss_dssp EEEETTEEEEEEECTTSCSSSCCCSSCEEEEE-ECBSSSSSCCCEECCBCSSEEEEESC
T ss_pred EEecCCEEEEEEcCCccccccceeeEEEEEEE-eeecCCCcceeEecCCCccEEEECCC
Confidence 34566677765 333344444443333222 45544444444344344455555554
No 9
>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}
Probab=15.29 E-value=16 Score=22.21 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=13.0
Q ss_pred eEEEEEEeeeeecCccc
Q psy16436 54 TNIAIVGLSVEANSPKG 70 (94)
Q Consensus 54 ~~i~iv~ls~~~~~~~~ 70 (94)
-.|||||.|...+++-.
T Consensus 14 ksIAVVGaS~~~~k~g~ 30 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAH 30 (136)
T ss_dssp CEEEEETCCSSTTSHHH
T ss_pred CeEEEEeecCCCCCchH
Confidence 36999999987776543
No 10
>d1b50a_ d.9.1.1 (A:) Macrophage inflammatory protein, MIP {Human (Homo sapiens), 1-alpha [TaxId: 9606]}
Probab=14.77 E-value=28 Score=19.40 Aligned_cols=16 Identities=19% Similarity=0.748 Sum_probs=12.0
Q ss_pred cceEeeeccCCCCCCC
Q psy16436 78 SHCCITKQAGPVPPGI 93 (94)
Q Consensus 78 ~~~~~~~~~~~~~~~~ 93 (94)
+.||..-..+++|+..
T Consensus 8 ~~CC~~~~~~~Ip~~~ 23 (69)
T d1b50a_ 8 TACCFSYTSRQIPQNF 23 (69)
T ss_dssp CCCCSCCCSSCCCTTT
T ss_pred cccccCccCCcCChhH
Confidence 3588888888888753
Done!