BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy16436
MTLAVYNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYPKVDGEDMLPIPCTNIAIVG
LSVEANSPKGWVKLLESSHCCITKQAGPVPPGIF

High Scoring Gene Products

Symbol, full name Information P value
F1MSA7
Uncharacterized protein
protein from Bos taurus 3.4e-08
Cecr2
cat eye syndrome chromosome region, candidate 2
gene from Rattus norvegicus 3.7e-07
CECR2
Cat eye syndrome critical region protein 2
protein from Homo sapiens 3.4e-06

The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy16436
        (94 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|F1MSA7 - symbol:F1MSA7 "Uncharacterized protein...   120  3.4e-08   3
RGD|1564182 - symbol:Cecr2 "cat eye syndrome chromosome r...   121  3.7e-07   2
UNIPROTKB|F1NJP2 - symbol:CECR2 "Uncharacterized protein"...   124  2.0e-06   1
UNIPROTKB|Q9BXF3 - symbol:CECR2 "Cat eye syndrome critica...   122  3.4e-06   1


>UNIPROTKB|F1MSA7 [details] [associations]
            symbol:F1MSA7 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0021915 "neural tube development" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IEA] [GO:0005719 "nuclear
            euchromatin" evidence=IEA] InterPro:IPR001487 Pfam:PF00439
            PRINTS:PR00503 PROSITE:PS50014 SMART:SM00297 GO:GO:0006915
            GO:GO:0005719 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
            InterPro:IPR018359 GeneTree:ENSGT00660000095339 EMBL:DAAA02014628
            IPI:IPI00907686 Ensembl:ENSBTAT00000012801 OMA:MDSRVMR
            Uniprot:F1MSA7
        Length = 1399

 Score = 120 (47.3 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
 Identities = 19/32 (59%), Positives = 28/32 (87%)

Query:     8 LESDSLRLQPLGYDRNQSAFWYFYGTRLYRED 39
             L++DSLR++PLG D + + +WYFYGTR+Y+ED
Sbjct:    95 LDADSLRVEPLGEDSSGALYWYFYGTRMYKED 126

 Score = 37 (18.1 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query:    37 REDYPKVDGEDMLPIPCTNIAIVGL 61
             R+ Y K+  ED LP  C+ IA  G+
Sbjct:   227 RQLY-KLLSEDFLPEICSMIAQKGV 250

 Score = 31 (16.0 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query:    75 LESSHCCITKQAGPVPPGI 93
             L +S C       P+ PG+
Sbjct:  1246 LSASECLYGAPPAPLGPGM 1264


>RGD|1564182 [details] [associations]
            symbol:Cecr2 "cat eye syndrome chromosome region, candidate 2"
            species:10116 "Rattus norvegicus" [GO:0001842 "neural fold
            formation" evidence=ISO] [GO:0001843 "neural tube closure"
            evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
            [GO:0021915 "neural tube development" evidence=ISO] [GO:0060122
            "inner ear receptor stereocilium organization" evidence=ISO]
            [GO:0090102 "cochlea development" evidence=ISO] InterPro:IPR001487
            Pfam:PF00439 PRINTS:PR00503 PROSITE:PS50014 SMART:SM00297
            RGD:1564182 GO:GO:0006915 GO:GO:0005719 Gene3D:1.20.920.10
            SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
            GeneTree:ENSGT00660000095339 IPI:IPI00214223
            Ensembl:ENSRNOT00000015499 Uniprot:F1LYI0
        Length = 1390

 Score = 121 (47.7 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
 Identities = 19/32 (59%), Positives = 28/32 (87%)

Query:     8 LESDSLRLQPLGYDRNQSAFWYFYGTRLYRED 39
             L++DSLR++PLG D + + +WYFYGTR+Y+ED
Sbjct:    99 LDADSLRVEPLGEDNSGALYWYFYGTRMYKED 130

 Score = 36 (17.7 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query:    83 TKQAGPVPPGI 93
             TKQ+  +PPG+
Sbjct:   747 TKQSSFLPPGV 757

 Score = 31 (16.0 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query:    45 GEDMLPIPCTNIAIVGLSVEANSP 68
             G++    PCT+  ++  +V   SP
Sbjct:  1021 GQNATTPPCTDPNLMAGTVNQFSP 1044


>UNIPROTKB|F1NJP2 [details] [associations]
            symbol:CECR2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0006915
            "apoptotic process" evidence=IEA] [GO:0021915 "neural tube
            development" evidence=IEA] InterPro:IPR001487 Pfam:PF00439
            PRINTS:PR00503 PROSITE:PS50014 SMART:SM00297 GO:GO:0006915
            GO:GO:0005719 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
            InterPro:IPR018359 GeneTree:ENSGT00660000095339 OMA:MDSRVMR
            EMBL:AADN02006521 EMBL:AADN02006522 EMBL:AADN02006523
            EMBL:AADN02006524 EMBL:AADN02006525 EMBL:AADN02006526
            IPI:IPI00577705 Ensembl:ENSGALT00000021278 Uniprot:F1NJP2
        Length = 1435

 Score = 124 (48.7 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 22/41 (53%), Positives = 32/41 (78%)

Query:     8 LESDSLRLQPLGYDRNQSAFWYFYGTRLYRED--YPKVDGE 46
             L++DSLR++PLG D + + +WYFYGTR+Y+ED    K +GE
Sbjct:    95 LDADSLRVEPLGEDSSGALYWYFYGTRMYKEDPVQAKTNGE 135


>UNIPROTKB|Q9BXF3 [details] [associations]
            symbol:CECR2 "Cat eye syndrome critical region protein 2"
            species:9606 "Homo sapiens" [GO:0005719 "nuclear euchromatin"
            evidence=IEA] [GO:0021915 "neural tube development" evidence=IEA]
            [GO:0007010 "cytoskeleton organization" evidence=NAS] [GO:0000910
            "cytokinesis" evidence=NAS] [GO:0016192 "vesicle-mediated
            transport" evidence=NAS] [GO:0043044 "ATP-dependent chromatin
            remodeling" evidence=IDA] [GO:0090537 "CERF complex" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0006309 "apoptotic DNA fragmentation"
            evidence=TAS] [GO:0006915 "apoptotic process" evidence=IDA]
            InterPro:IPR001487 Pfam:PF00439 PRINTS:PR00503 PROSITE:PS50014
            SMART:SM00297 GO:GO:0007010 GO:GO:0016192 GO:GO:0000910
            GO:GO:0005719 GO:GO:0006309 GO:GO:0043044 Gene3D:1.20.920.10
            SUPFAM:SSF47370 PROSITE:PS00633 eggNOG:COG5076 InterPro:IPR018359
            EMBL:CH471193 Orphanet:195 EMBL:AF336133 EMBL:AC004019
            EMBL:BX647449 EMBL:AL832377 EMBL:AB051527 EMBL:AF411609
            IPI:IPI00215838 IPI:IPI00785169 IPI:IPI00848350 RefSeq:NP_113601.2
            UniGene:Hs.658723 PDB:3NXB PDBsum:3NXB ProteinModelPortal:Q9BXF3
            SMR:Q9BXF3 STRING:Q9BXF3 PhosphoSite:Q9BXF3 DMDM:114152782
            PaxDb:Q9BXF3 PRIDE:Q9BXF3 DNASU:27443 Ensembl:ENST00000262608
            GeneID:27443 KEGG:hsa:27443 UCSC:uc010gqw.1 CTD:27443
            GeneCards:GC22P017840 H-InvDB:HIX0023032 HGNC:HGNC:1840
            HPA:HPA002943 MIM:607576 neXtProt:NX_Q9BXF3 PharmGKB:PA26383
            HOGENOM:HOG000081808 HOVERGEN:HBG081078 ChiTaRS:CECR2
            EvolutionaryTrace:Q9BXF3 GenomeRNAi:27443 NextBio:50516
            ArrayExpress:Q9BXF3 Bgee:Q9BXF3 CleanEx:HS_CECR2
            Genevestigator:Q9BXF3 GermOnline:ENSG00000099954 GO:GO:0031010
            Uniprot:Q9BXF3
        Length = 1484

 Score = 122 (48.0 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 22/41 (53%), Positives = 32/41 (78%)

Query:     8 LESDSLRLQPLGYDRNQSAFWYFYGTRLYRED--YPKVDGE 46
             L++DSLR++PLG D + + +WYFYGTR+Y+ED    K +GE
Sbjct:   137 LDADSLRVEPLGEDNSGALYWYFYGTRMYKEDPVQGKSNGE 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.139   0.447    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       94        94   0.00091  102 3  11 22  0.38    30
                                                     29  0.42    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  565 (60 KB)
  Total size of DFA:  121 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.50u 0.10s 9.60t   Elapsed:  00:00:01
  Total cpu time:  9.50u 0.10s 9.60t   Elapsed:  00:00:01
  Start:  Thu Aug 15 11:41:36 2013   End:  Thu Aug 15 11:41:37 2013

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