RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16436
         (94 letters)



>3l22_A SUSD superfamily protein; structural genomics, joint center
           structural genomics, JCSG, protein structure initiative;
           HET: MSE; 2.05A {Bacteroides fragilis}
          Length = 441

 Score = 25.5 bits (56), Expect = 2.7
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 26  AFWYFYGTRLYREDYPKVDGEDMLPIP 52
           A  Y+Y   LY   Y        +P+ 
Sbjct: 125 ALAYYYLNNLYPTPYSVNPDAKSVPLR 151


>3v5q_A NT-3 growth factor receptor; kinase domain, kinase,
           phosphorylation, transferase-transfer inhibitor complex;
           HET: 0F4; 2.20A {Homo sapiens}
          Length = 297

 Score = 25.3 bits (56), Expect = 3.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 35  LYREDYPKVDGEDMLPI 51
           +Y  DY +V G  MLPI
Sbjct: 183 VYSTDYYRVGGHTMLPI 199


>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor;
           HET: V4Z; 2.75A {Homo sapiens}
          Length = 329

 Score = 25.0 bits (55), Expect = 5.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 35  LYREDYPKVDGEDMLPI 51
           +Y  DY +V G  MLPI
Sbjct: 208 IYSTDYYRVGGRTMLPI 224


>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation,
           signal transduction, MASS spectrometry, transferase;
           2.05A {Rattus norvegicus} SCOP: d.144.1.7
          Length = 343

 Score = 24.6 bits (54), Expect = 6.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 35  LYREDYPKVDGEDMLPI 51
           +Y  DY K DG D +PI
Sbjct: 224 IYSADYYKADGNDAIPI 240


>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase;
           HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A*
           2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
          Length = 327

 Score = 24.2 bits (53), Expect = 7.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 35  LYREDYPKVDGEDMLPI 51
           +YR  Y +  G  MLP+
Sbjct: 193 IYRASYYRKGGCAMLPV 209


>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding,
           glycoprotein, membrane, nucleotide-binding,
           phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
          Length = 367

 Score = 24.3 bits (53), Expect = 8.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 35  LYREDYPKVDGEDMLPI 51
           +YR  Y +  G  MLP+
Sbjct: 234 IYRAGYYRKGGCAMLPV 250


>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase,
           neurotrophic tyrosine kinase, receptor-related NTRKR2;
           2.90A {Homo sapiens}
          Length = 289

 Score = 24.1 bits (53), Expect = 8.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 35  LYREDYPKVDGEDMLPI 51
           +Y  DY K+ G  +LPI
Sbjct: 178 VYAADYYKLLGNSLLPI 194


>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase
           domain, hormone-growth factor complex; 1.50A {Homo
           sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A*
           1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A*
           3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A*
           1gag_A* 1irk_A 3bu3_A* ...
          Length = 322

 Score = 23.8 bits (52), Expect = 9.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)

Query: 35  LYREDYPKVDGEDMLPI 51
           +Y  DY +  G+ +LP+
Sbjct: 188 IYETDYYRKGGKGLLPV 204


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0736    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,431,547
Number of extensions: 68814
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 11
Length of query: 94
Length of database: 6,701,793
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,998,612
Effective search space: 164954196
Effective search space used: 164954196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)