RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16436
         (94 letters)



>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha,
          eIF2alpha, N-terminal domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 86

 Score = 23.8 bits (51), Expect = 2.4
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 34 RLYREDYPKVDGEDMLPIPCTNIAIVGLSVEANSPKGWVKLLESSHCCITKQAGP 88
          R Y+  +P+V+  D++ +   +IA +G  V          ++  S     +    
Sbjct: 4  RFYQHKFPEVE--DVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSI 56


>d1chua1 a.7.3.1 (A:423-533) L-aspartate oxidase {Escherichia coli
           [TaxId: 562]}
          Length = 111

 Score = 23.5 bits (50), Expect = 3.7
 Identities = 3/11 (27%), Positives = 6/11 (54%)

Query: 36  YREDYPKVDGE 46
           +  DYP++   
Sbjct: 93  FTLDYPELLTH 103


>d1neka1 a.7.3.1 (A:451-588) Succinate dehydogenase {Escherichia
           coli [TaxId: 562]}
          Length = 138

 Score = 23.2 bits (49), Expect = 5.0
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 36  YREDYPKVDGEDML 49
            R D+P  D E+ L
Sbjct: 91  SRFDFPDRDDENWL 104


>d1i4ma_ d.6.1.1 (A:) Prion protein domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 108

 Score = 22.9 bits (49), Expect = 7.1
 Identities = 8/39 (20%), Positives = 14/39 (35%)

Query: 21 DRNQSAFWYFYGTRLYREDYPKVDGEDMLPIPCTNIAIV 59
          DR      + Y  ++Y     +   ++     C NI I 
Sbjct: 29 DRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCVNITIK 67


>d1jnra1 a.7.3.1 (A:503-643) Adenylylsulfate reductase A subunit
           {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 141

 Score = 22.7 bits (48), Expect = 8.8
 Identities = 6/12 (50%), Positives = 10/12 (83%)

Query: 36  YREDYPKVDGED 47
           YR DYP+++ E+
Sbjct: 99  YRTDYPELNDEE 110


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0502    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 360,336
Number of extensions: 14085
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 6
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)