BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16437
(501 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ED9|A Chain A, Crystal Structure Of A CaibBAIF FAMILY PROTEIN FROM
BRUCELLA SUIS
Length = 385
Score = 255 bits (651), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 120/283 (42%), Positives = 177/283 (62%), Gaps = 3/283 (1%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLN--NTELSTYFTCV 277
+++++L RI+AGP+ L DLGA+VIKVE P GD+ R WGPPF++ + YF
Sbjct: 13 LKVVELARILAGPWVGQTLCDLGADVIKVESP-EGDDTRTWGPPFIDVEGERSAAYFHAC 71
Query: 278 NRNKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCS 337
NR K+S+ DF+T EG+++++ L + DV++ENF G LD+ L Y+ L IN QLIYCS
Sbjct: 72 NRGKRSITADFRTEEGRELVRRLVAEADVVIENFKLGGLDKYGLDYESLKAINPQLIYCS 131
Query: 338 VTGFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAA 397
+TGFG GPY +R GYD + +GG++ +TG PD P K+G+A D+ TGLY+ A+ +A
Sbjct: 132 ITGFGHTGPYAERAGYDFMIQGMGGIMDLTGEPDREPQKIGVAFADIFTGLYSVIAIQSA 191
Query: 398 LLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLNAGIEGKRWGTSHANVVPHQVFKTSNG 457
L+ + +TGKGQ ID L +L N NYL +G KR G +H N+ P+Q S+G
Sbjct: 192 LIMRARTGKGQHIDMALFDCMSGVLANQAMNYLASGKSPKRMGNAHPNIAPYQTLSVSDG 251
Query: 458 YVTIGTGSDKQYQDMCKVMNLQHLALDPRYLTGALILAMTSHL 500
Y I G+D Q+ + ++ + LA D R+ T + +A + L
Sbjct: 252 YFIIACGNDGQFGKLSTLLGIGELAKDERFATNSARVANRAAL 294
>pdb|1P5H|A Chain A, Crystal Structure Of Formyl-Coa Transferase (Apoenzyme)
From Oxalobacter Formigenes
pdb|1P5H|B Chain B, Crystal Structure Of Formyl-Coa Transferase (Apoenzyme)
From Oxalobacter Formigenes
pdb|1P5R|A Chain A, Formyl-Coa Transferase In Complex With Coenzyme A
pdb|1P5R|B Chain B, Formyl-Coa Transferase In Complex With Coenzyme A
Length = 428
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 115/191 (60%), Gaps = 2/191 (1%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR 279
+ +LD T + AGP CT ++ LGA VIK+E+ +GD R W N L YFT N
Sbjct: 8 INVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSL--YFTMFNC 65
Query: 280 NKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339
NK+S+ +D KTPEG+++++ + K+ DV+VENF PG LDR+ ++++ E+N ++I SV
Sbjct: 66 NKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVK 125
Query: 340 GFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALL 399
G+ + Y+ +A GG TG DGPP G A D +G++ ++AAL
Sbjct: 126 GYAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGDSNSGMHLMIGILAALE 185
Query: 400 HKYKTGKGQKI 410
++KTG+GQK+
Sbjct: 186 MRHKTGRGQKV 196
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
+C +++ DP Y T RV+ + IE K +K E P V
Sbjct: 292 ICDMIDKPEWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVM 351
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLK 120
S+ ++ D +Q + V E+ E G+ VG +S QPE+ T P LGEHTD VLK
Sbjct: 352 SMKELAHDPSLQKVGTVVEVVDEIRGNHLTVGAPFKFSGFQPEI-TRAPLLGEHTDEVLK 410
Query: 121 DL 122
+L
Sbjct: 411 EL 412
>pdb|1PT5|A Chain A, Crystal Structure Of Gene Yfdw Of E. Coli
pdb|1PT5|B Chain B, Crystal Structure Of Gene Yfdw Of E. Coli
pdb|1PT7|A Chain A, Crystal Structure Of The Apo-Form Of The Yfdw Gene Product
Of E. Coli
pdb|1PT7|B Chain B, Crystal Structure Of The Apo-Form Of The Yfdw Gene Product
Of E. Coli
pdb|1PT8|A Chain A, Crystal Structure Of The Yfdw Gene Product Of E. Coli, In
Complex With Oxalate And Acetyl-Coa
pdb|1PT8|B Chain B, Crystal Structure Of The Yfdw Gene Product Of E. Coli, In
Complex With Oxalate And Acetyl-Coa
Length = 437
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 121/195 (62%), Gaps = 2/195 (1%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR 279
+++LD T + +GP CT +LA GA+VIK+E+P GD R + L YFT +N
Sbjct: 29 IKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDAL--YFTMLNS 86
Query: 280 NKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339
NK+S+ ++ KT EG+++++ L ++ D+LVENF PG +D + ++H+ EIN +LI+ S+
Sbjct: 87 NKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSIK 146
Query: 340 GFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALL 399
GF PY + Y+ +A + GG TG DGPP A D TG++ ++AALL
Sbjct: 147 GFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPPLVSAAALGDSNTGMHLLIGLLAALL 206
Query: 400 HKYKTGKGQKIDCNL 414
H+ KTG+GQ++ ++
Sbjct: 207 HREKTGRGQRVTMSM 221
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 2/130 (1%)
Query: 2 CKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVNS 61
CK + DP Y T R + + EIE T+ E + P A V S
Sbjct: 302 CKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTIDKHEAVAYLTQFDIPCAPVLS 361
Query: 62 ISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLKD 121
+ ++ D ++ V E+ G VG + +S P+++ P LGEHT VL++
Sbjct: 362 MKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPMKFSAFTPDIKA-APLLGEHTAAVLQE 420
Query: 122 LLNYDETTIA 131
L Y + IA
Sbjct: 421 -LGYSDDEIA 429
>pdb|2VJO|A Chain A, Formyl-Coa Transferase Mutant Variant Q17a With Aspartyl-
Coa Thioester Intermediates And Oxalate
pdb|2VJO|B Chain B, Formyl-Coa Transferase Mutant Variant Q17a With Aspartyl-
Coa Thioester Intermediates And Oxalate
Length = 428
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 115/191 (60%), Gaps = 2/191 (1%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR 279
+ +LD T + AGP CT ++ LGA VIK+E+ +GD R W N L YFT N
Sbjct: 8 INVLDFTHVAAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSL--YFTMFNC 65
Query: 280 NKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339
NK+S+ +D KTPEG+++++ + K+ DV+VENF PG LDR+ ++++ E+N ++I SV
Sbjct: 66 NKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVK 125
Query: 340 GFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALL 399
G+ + Y+ +A GG TG DGPP G A D +G++ ++AAL
Sbjct: 126 GYAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGDSNSGMHLMIGILAALE 185
Query: 400 HKYKTGKGQKI 410
++KTG+GQK+
Sbjct: 186 IRHKTGRGQKV 196
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
+C +++ DP Y T RV+ + IE K +K E P V
Sbjct: 292 ICDMIDKPEWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVM 351
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLK 120
S+ ++ D +Q + V E+ E G+ VG +S QPE+ T P LGEHTD VLK
Sbjct: 352 SMKELAHDPSLQKVGTVVEVVDEIRGNHLTVGAPFKFSGFQPEI-TRAPLLGEHTDEVLK 410
Query: 121 DL 122
+L
Sbjct: 411 EL 412
>pdb|1Q6Y|A Chain A, Hypothetical Protein Yfdw From E. Coli Bound To Coenzyme A
Length = 428
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 121/195 (62%), Gaps = 2/195 (1%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR 279
+++LD T + +GP CT +LA GA+VIK+E+P GD R + L YFT +N
Sbjct: 10 IKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDAL--YFTMLNS 67
Query: 280 NKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339
NK+S+ ++ KT EG+++++ L ++ D+LVENF PG +D + ++H+ EIN +LI+ S+
Sbjct: 68 NKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSIK 127
Query: 340 GFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALL 399
GF PY + Y+ +A + GG TG DGPP A D TG++ ++AALL
Sbjct: 128 GFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPPLVSAAALGDSNTGMHLLIGLLAALL 187
Query: 400 HKYKTGKGQKIDCNL 414
H+ KTG+GQ++ ++
Sbjct: 188 HREKTGRGQRVTMSM 202
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 2/130 (1%)
Query: 2 CKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVNS 61
CK + DP Y T R + + EIE T+ E + P A V S
Sbjct: 283 CKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTIDKHEAVAYLTQFDIPCAPVLS 342
Query: 62 ISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLKD 121
+ ++ D ++ V E+ G VG + +S P+++ P LGEHT VL++
Sbjct: 343 MKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPMKFSAFTPDIKA-APLLGEHTAAVLQE 401
Query: 122 LLNYDETTIA 131
L Y + IA
Sbjct: 402 -LGYSDDEIA 410
>pdb|2VJK|A Chain A, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Oxalyl-Coa
pdb|2VJK|B Chain B, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Oxalyl-Coa
pdb|2VJL|A Chain A, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Formyl-Coa
pdb|2VJL|B Chain B, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Formyl-Coa
pdb|2VJM|A Chain A, Formyl-Coa Transferase With Aspartyl-Formyl Anhydide
Intermediate
Length = 428
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 115/191 (60%), Gaps = 2/191 (1%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR 279
+ +LD T + AGP CT ++ LGA VIK+E+ +GD R W N L YFT N
Sbjct: 8 INVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSL--YFTMFNC 65
Query: 280 NKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339
NK+S+ +D KTPEG+++++ + K+ DV+VENF PG LDR+ ++++ E+N ++I SV
Sbjct: 66 NKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVK 125
Query: 340 GFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALL 399
G+ + Y+ +A GG TG DGPP G A D +G++ ++AAL
Sbjct: 126 GYAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGDSNSGMHLMIGILAALE 185
Query: 400 HKYKTGKGQKI 410
++KTG+GQK+
Sbjct: 186 IRHKTGRGQKV 196
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
+C +++ DP Y T RV+ + IE K +K E P V
Sbjct: 292 ICDMIDKPEWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVM 351
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLK 120
S+ ++ D +Q + V E+ E G+ VG +S QPE+ T P LGEHTD VLK
Sbjct: 352 SMKELAHDPSLQKVGTVVEVVDEIRGNHLTVGAPFKFSGFQPEI-TRAPLLGEHTDEVLK 410
Query: 121 DL 122
+L
Sbjct: 411 EL 412
>pdb|1T4C|A Chain A, Formyl-Coa Transferase In Complex With Oxalyl-Coa
Length = 427
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 115/191 (60%), Gaps = 2/191 (1%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR 279
+ +LD T + AGP CT ++ LGA VIK+E+ +GD R W N L YFT N
Sbjct: 7 INVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSL--YFTMFNC 64
Query: 280 NKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339
NK+S+ +D KTPEG+++++ + K+ DV+VENF PG LDR+ ++++ E+N ++I SV
Sbjct: 65 NKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVK 124
Query: 340 GFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALL 399
G+ + Y+ +A GG TG DGPP G A D +G++ ++AAL
Sbjct: 125 GYAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGDSNSGMHLMIGILAALE 184
Query: 400 HKYKTGKGQKI 410
++KTG+GQK+
Sbjct: 185 IRHKTGRGQKV 195
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
+C +++ DP Y T RV+ + IE K +K E P V
Sbjct: 291 ICDMIDKPEWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVM 350
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLK 120
S+ ++ D +Q + V E+ E G+ VG +S QPE+ T P LGEHTD VLK
Sbjct: 351 SMKELAHDPSLQKVGTVVEVVDEIRGNHLTVGAPFKFSGFQPEI-TRAPLLGEHTDEVLK 409
Query: 121 DL 122
+L
Sbjct: 410 EL 411
>pdb|2VJN|A Chain A, Formyl-coa Transferase Mutant Variant G260a
pdb|2VJN|B Chain B, Formyl-coa Transferase Mutant Variant G260a
Length = 428
Score = 145 bits (365), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 115/191 (60%), Gaps = 2/191 (1%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR 279
+ +LD T + AGP CT ++ LGA VIK+E+ +GD R W N L YFT N
Sbjct: 8 INVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSL--YFTMFNC 65
Query: 280 NKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339
NK+S+ +D KTPEG+++++ + K+ DV+VENF PG LDR+ ++++ E+N ++I SV
Sbjct: 66 NKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVK 125
Query: 340 GFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALL 399
G+ + Y+ +A GG TG DGPP G A D +G++ ++AAL
Sbjct: 126 GYAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGDSNSGMHLMIGILAALE 185
Query: 400 HKYKTGKGQKI 410
++KTG+GQK+
Sbjct: 186 IRHKTGRGQKV 196
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
+C +++ DP Y T RV+ + IE K +K E P V
Sbjct: 292 ICDMIDKPEWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVM 351
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLK 120
S+ ++ D +Q + V E+ E G+ VG +S QPE+ T P LGEHTD VLK
Sbjct: 352 SMKELAHDPSLQKVGTVVEVVDEIRGNHLTVGAPFKFSGFQPEI-TRAPLLGEHTDEVLK 410
Query: 121 DL 122
+L
Sbjct: 411 EL 412
>pdb|1VGR|A Chain A, Formyl-Coa Transferase Mutant Asp169 To Glu
pdb|1VGR|B Chain B, Formyl-Coa Transferase Mutant Asp169 To Glu
Length = 427
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 115/191 (60%), Gaps = 2/191 (1%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR 279
+ +LD T + AGP CT ++ LGA VIK+E+ +GD R W N L YFT N
Sbjct: 7 INVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSL--YFTMFNC 64
Query: 280 NKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339
NK+S+ +D KTPEG+++++ + K+ DV+VENF PG LDR+ ++++ E+N ++I SV
Sbjct: 65 NKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVK 124
Query: 340 GFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALL 399
G+ + Y+ +A GG TG DGPP G A + +G++ ++AAL
Sbjct: 125 GYAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGESNSGMHLMIGILAALE 184
Query: 400 HKYKTGKGQKI 410
++KTG+GQK+
Sbjct: 185 IRHKTGRGQKV 195
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
+C +++ DP Y T RV+ + IE K +K E P V
Sbjct: 291 ICDMIDKPEWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVM 350
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLK 120
S+ ++ D +Q + V E+ E G+ VG +S QPE+ T P LGEHTD VLK
Sbjct: 351 SMKELAHDPSLQKVGTVVEVVDEIRGNHLTVGAPFKFSGFQPEI-TRAPLLGEHTDEVLK 409
Query: 121 DL 122
+L
Sbjct: 410 EL 411
>pdb|1T3Z|A Chain A, Formyl-Coa Tranferase Mutant Asp169 To Ser
pdb|1T3Z|B Chain B, Formyl-Coa Tranferase Mutant Asp169 To Ser
Length = 427
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 114/191 (59%), Gaps = 2/191 (1%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR 279
+ +LD T + AGP CT ++ LGA VIK+E+ +GD R W N L YFT N
Sbjct: 7 INVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSL--YFTMFNC 64
Query: 280 NKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339
NK+S+ +D KTPEG+++++ + K+ DV+VENF PG LDR+ ++++ E+N ++I SV
Sbjct: 65 NKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVK 124
Query: 340 GFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALL 399
G+ + Y+ +A GG TG DGPP G A +G++ ++AAL
Sbjct: 125 GYAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGSSNSGMHLMIGILAALE 184
Query: 400 HKYKTGKGQKI 410
++KTG+GQK+
Sbjct: 185 IRHKTGRGQKV 195
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
+C +++ DP Y T RV+ + IE K +K E P V
Sbjct: 291 ICDMIDKPEWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVM 350
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLK 120
S+ ++ D +Q + V E+ E G+ VG +S QPE+ T P LGEHTD VLK
Sbjct: 351 SMKELAHDPSLQKVGTVVEVVDEIRGNHLTVGAPFKFSGFQPEI-TRAPLLGEHTDEVLK 409
Query: 121 DL 122
+L
Sbjct: 410 EL 411
>pdb|1T4C|B Chain B, Formyl-Coa Transferase In Complex With Oxalyl-Coa
Length = 427
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 114/191 (59%), Gaps = 2/191 (1%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR 279
+ +LD T + AGP CT ++ LGA VIK+E+ +GD R W N L YFT N
Sbjct: 7 INVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSL--YFTMFNC 64
Query: 280 NKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339
NK+S+ +D KTPEG+++++ + K+ DV+VENF PG LDR+ ++++ E+N ++I SV
Sbjct: 65 NKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVK 124
Query: 340 GFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALL 399
G+ + Y+ +A GG TG DGPP G A +G++ ++AAL
Sbjct: 125 GYAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGXSNSGMHLMIGILAALE 184
Query: 400 HKYKTGKGQKI 410
++KTG+GQK+
Sbjct: 185 IRHKTGRGQKV 195
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
+C +++ DP Y T RV+ + IE K +K E P V
Sbjct: 291 ICDMIDKPEWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVM 350
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLK 120
S+ ++ D +Q + V E+ E G+ VG +S QPE+ T P LGEHTD VLK
Sbjct: 351 SMKELAHDPSLQKVGTVVEVVDEIRGNHLTVGAPFKFSGFQPEI-TRAPLLGEHTDEVLK 409
Query: 121 DL 122
+L
Sbjct: 410 EL 411
>pdb|2VJM|B Chain B, Formyl-Coa Transferase With Aspartyl-Formyl Anhydide
Intermediate
Length = 428
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 114/191 (59%), Gaps = 2/191 (1%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR 279
+ +LD T + AGP CT ++ LGA VIK+E+ +GD R W N L YFT N
Sbjct: 8 INVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSL--YFTMFNC 65
Query: 280 NKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339
NK+S+ +D KTPEG+++++ + K+ DV+VENF PG LDR+ ++++ E+N ++I SV
Sbjct: 66 NKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVK 125
Query: 340 GFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALL 399
G+ + Y+ +A GG TG DGPP G A +G++ ++AAL
Sbjct: 126 GYAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGXSNSGMHLMIGILAALE 185
Query: 400 HKYKTGKGQKI 410
++KTG+GQK+
Sbjct: 186 IRHKTGRGQKV 196
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
+C +++ DP Y T RV+ + IE K +K E P V
Sbjct: 292 ICDMIDKPEWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVM 351
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLK 120
S+ ++ D +Q + V E+ E G+ VG +S QPE+ T P LGEHTD VLK
Sbjct: 352 SMKELAHDPSLQKVGTVVEVVDEIRGNHLTVGAPFKFSGFQPEI-TRAPLLGEHTDEVLK 410
Query: 121 DL 122
+L
Sbjct: 411 EL 412
>pdb|1VGQ|A Chain A, Formyl-Coa Transferase Mutant Asp169 To Ala
pdb|1VGQ|B Chain B, Formyl-Coa Transferase Mutant Asp169 To Ala
Length = 427
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 114/191 (59%), Gaps = 2/191 (1%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR 279
+ +LD T + AGP CT ++ LGA VIK+E+ +GD R W N L YFT N
Sbjct: 7 INVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSL--YFTMFNC 64
Query: 280 NKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339
NK+S+ +D KTPEG+++++ + K+ DV+VENF PG LDR+ ++++ E+N ++I SV
Sbjct: 65 NKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVK 124
Query: 340 GFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALL 399
G+ + Y+ +A GG TG DGPP G A +G++ ++AAL
Sbjct: 125 GYAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGASNSGMHLMIGILAALE 184
Query: 400 HKYKTGKGQKI 410
++KTG+GQK+
Sbjct: 185 IRHKTGRGQKV 195
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
+C +++ DP Y T RV+ + IE K +K E P V
Sbjct: 291 ICDMIDKPEWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVM 350
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLK 120
S+ ++ D +Q + V E+ E G+ VG +S QPE+ T P LGEHTD VLK
Sbjct: 351 SMKELAHDPSLQKVGTVVEVVDEIRGNHLTVGAPFKFSGFQPEI-TRAPLLGEHTDEVLK 409
Query: 121 DL 122
+L
Sbjct: 410 EL 411
>pdb|2VJP|A Chain A, Formyl-Coa Transferase Mutant Variant W48f
pdb|2VJP|B Chain B, Formyl-Coa Transferase Mutant Variant W48f
Length = 428
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 116/193 (60%), Gaps = 6/193 (3%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTEL--STYFTCV 277
+ +LD T + AGP CT ++ LGA VIK+E+ +GD R FL + S YFT
Sbjct: 8 INVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRG----FLQDKPNVDSLYFTMF 63
Query: 278 NRNKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCS 337
N NK+S+ +D KTPEG+++++ + K+ DV+VENF PG LDR+ ++++ E+N ++I S
Sbjct: 64 NCNKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILAS 123
Query: 338 VTGFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAA 397
V G+ + Y+ +A GG TG DGPP G A D +G++ ++AA
Sbjct: 124 VKGYAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGDSNSGMHLMIGILAA 183
Query: 398 LLHKYKTGKGQKI 410
L ++KTG+GQK+
Sbjct: 184 LEIRHKTGRGQKV 196
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
+C +++ DP Y T RV+ + IE K +K E P V
Sbjct: 292 ICDMIDKPEWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVM 351
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLK 120
S+ ++ D +Q + V E+ E G+ VG +S QPE+ T P LGEHTD VLK
Sbjct: 352 SMKELAHDPSLQKVGTVVEVVDEIRGNHLTVGAPFKFSGFQPEI-TRAPLLGEHTDEVLK 410
Query: 121 DL 122
+L
Sbjct: 411 EL 412
>pdb|2VJQ|A Chain A, Formyl-Coa Transferase Mutant Variant W48q
pdb|2VJQ|B Chain B, Formyl-Coa Transferase Mutant Variant W48q
pdb|2VJQ|C Chain C, Formyl-Coa Transferase Mutant Variant W48q
pdb|2VJQ|D Chain D, Formyl-Coa Transferase Mutant Variant W48q
Length = 428
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 114/191 (59%), Gaps = 2/191 (1%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR 279
+ +LD T + AGP CT ++ LGA VIK+E+ +GD R G S YFT N
Sbjct: 8 INVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTR--GQLQDKPNVDSLYFTMFNC 65
Query: 280 NKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339
NK+S+ +D KTPEG+++++ + K+ DV+VENF PG LDR+ ++++ E+N ++I SV
Sbjct: 66 NKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVK 125
Query: 340 GFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALL 399
G+ + Y+ +A GG TG DGPP G A D +G++ ++AAL
Sbjct: 126 GYAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGDSNSGMHLMIGILAALE 185
Query: 400 HKYKTGKGQKI 410
++KTG+GQK+
Sbjct: 186 IRHKTGRGQKV 196
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
+C +++ DP Y T RV+ + IE K +K E P V
Sbjct: 292 ICDMIDKPEWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVM 351
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLK 120
S+ ++ D +Q + V E+ E G+ VG +S QPE+ T P LGEHTD VLK
Sbjct: 352 SMKELAHDPSLQKVGTVVEVVDEIRGNHLTVGAPFKFSGFQPEI-TRAPLLGEHTDEVLK 410
Query: 121 DL 122
+L
Sbjct: 411 EL 412
>pdb|1Q7E|A Chain A, Crystal Structure Of Yfdw Protein From E. Coli
Length = 428
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 116/191 (60%), Gaps = 2/191 (1%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR 279
+++LD T + +GP CT LA GA+VIK+E+P GD R + L YFT +N
Sbjct: 10 IKVLDFTGVQSGPSCTQXLAWFGADVIKIERPGVGDVTRHQLRDIPDIDAL--YFTXLNS 67
Query: 280 NKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339
NK+S+ ++ KT EG+++ + L ++ D+LVENF PG +D + ++H+ EIN +LI+ S+
Sbjct: 68 NKRSIELNTKTAEGKEVXEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSIK 127
Query: 340 GFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALL 399
GF PY + Y+ +A + GG TG DGPP A D TG + ++AALL
Sbjct: 128 GFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPPLVSAAALGDSNTGXHLLIGLLAALL 187
Query: 400 HKYKTGKGQKI 410
H+ KTG+GQ++
Sbjct: 188 HREKTGRGQRV 198
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 2/130 (1%)
Query: 2 CKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVNS 61
CK + DP Y T R + + EIE T+ E + P A V S
Sbjct: 283 CKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTIDKHEAVAYLTQFDIPCAPVLS 342
Query: 62 ISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLKD 121
++ D ++ V E+ G VG +S P+++ P LGEHT VL++
Sbjct: 343 XKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPXKFSAFTPDIKA-APLLGEHTAAVLQE 401
Query: 122 LLNYDETTIA 131
L Y + IA
Sbjct: 402 -LGYSDDEIA 410
>pdb|1PQY|A Chain A, Crystal Structure Of Formyl-Coa Transferase Yfdw From E.
Coli
Length = 428
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 115/191 (60%), Gaps = 2/191 (1%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR 279
+++LD T + +GP CT LA GA+VIK+E+P GD R + L YFT +N
Sbjct: 10 IKVLDFTGVQSGPSCTQXLAWFGADVIKIERPGVGDVTRHQLRDIPDIDAL--YFTXLNS 67
Query: 280 NKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339
NK+S+ ++ KT EG+++ + L ++ D+LVENF PG +D ++H+ EIN +LI+ S+
Sbjct: 68 NKRSIELNTKTAEGKEVXEKLIREADILVENFHPGAIDHXGFTWEHIQEINPRLIFGSIK 127
Query: 340 GFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALL 399
GF PY + Y+ +A + GG TG DGPP A D TG + ++AALL
Sbjct: 128 GFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPPLVSAAALGDSNTGXHLLIGLLAALL 187
Query: 400 HKYKTGKGQKI 410
H+ KTG+GQ++
Sbjct: 188 HREKTGRGQRV 198
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 2/130 (1%)
Query: 2 CKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVNS 61
CK + DP Y T R + + EIE T+ E + P A V S
Sbjct: 283 CKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTIDKHEAVAYLTQFDIPCAPVLS 342
Query: 62 ISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLKD 121
++ D ++ V E+ G VG +S P+++ P LGEHT VL++
Sbjct: 343 XKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPXKFSAFTPDIKA-APLLGEHTAAVLQE 401
Query: 122 LLNYDETTIA 131
L Y + IA
Sbjct: 402 -LGYSDDEIA 410
>pdb|3UBM|A Chain A, Formyl-Coa:oxalate Coa-Transferase From Acetobacter Aceti
pdb|3UBM|B Chain B, Formyl-Coa:oxalate Coa-Transferase From Acetobacter Aceti
pdb|3UBM|C Chain C, Formyl-Coa:oxalate Coa-Transferase From Acetobacter Aceti
pdb|3UBM|D Chain D, Formyl-Coa:oxalate Coa-Transferase From Acetobacter Aceti
Length = 456
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 15/208 (7%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR 279
++++D + + P LLA GA+VIK+E+ GD R + L YFT +N
Sbjct: 34 IKVIDFGGVQSVPSAAQLLAWYGADVIKIERVGVGDITRNQLRDIPDADAL--YFTMLNC 91
Query: 280 NKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339
NK+SV ++ KTPEG+ + + K D+L+ENF PG ++R+ +++L ++N +LIY +V
Sbjct: 92 NKRSVELNTKTPEGKAVFEKCIKWADILLENFRPGAMERMGFTWEYLQQLNPRLIYGTVK 151
Query: 340 GFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIAS-------------IDLAT 386
GFG P+ Y+ +A GG TG+ +G P G A D T
Sbjct: 152 GFGENSPWAGVSAYENVAQCAGGATSTTGYWNGAPLVDGQAPGNNNGPLVSAAALGDSNT 211
Query: 387 GLYAHGAVMAALLHKYKTGKGQKIDCNL 414
G + V+AAL + +TGKGQKI ++
Sbjct: 212 GNHLLIGVLAALFGRERTGKGQKISVSM 239
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 2 CKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVNS 61
C+ + A DP+Y T R + + IE +KT E + P + V S
Sbjct: 320 CEAIGKPEWATDPKYNTAKARETHMFEIFAAIEKAIADKTKYEAVAHLAKYRVPCSPVLS 379
Query: 62 ISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLKD 121
+ ++ +++ + E+ K G + P + +S PE++ P LG+HTD VL +
Sbjct: 380 MKEIAEAPDLRESGTIVEVQQPKRGTFLTINP-IKFSGFTPEIKA-APLLGQHTDEVLAE 437
Query: 122 L 122
L
Sbjct: 438 L 438
>pdb|1X74|A Chain A, Alpha-Methylacyl-Coa Racemase From Mycobacterium
Tuberculosis- Mutational And Structural Characterization
Of The Fold And Active Site
pdb|1X74|B Chain B, Alpha-Methylacyl-Coa Racemase From Mycobacterium
Tuberculosis- Mutational And Structural Characterization
Of The Fold And Active Site
pdb|1X74|C Chain C, Alpha-Methylacyl-Coa Racemase From Mycobacterium
Tuberculosis- Mutational And Structural Characterization
Of The Fold And Active Site
pdb|1X74|D Chain D, Alpha-Methylacyl-Coa Racemase From Mycobacterium
Tuberculosis- Mutational And Structural Characterization
Of The Fold And Active Site
pdb|2GCE|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A SMOOTH,
METHIONINE- Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCE|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A SMOOTH,
METHIONINE- Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCE|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A SMOOTH,
METHIONINE- Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCE|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A SMOOTH,
METHIONINE- Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCI|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AsparteHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCI|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AsparteHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCI|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AsparteHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCI|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AsparteHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD0|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD0|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD0|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD0|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD2|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD2|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD2|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD2|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD6|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD6|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD6|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD6|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2YIM|A Chain A, The Enolisation Chemistry Of A Thioester-Dependent
Racemase: The 1.4 A Crystal Structure Of A Complex With
A Planar Reaction Intermediate Analogue
pdb|2YIM|B Chain B, The Enolisation Chemistry Of A Thioester-Dependent
Racemase: The 1.4 A Crystal Structure Of A Complex With
A Planar Reaction Intermediate Analogue
pdb|2YIM|C Chain C, The Enolisation Chemistry Of A Thioester-Dependent
Racemase: The 1.4 A Crystal Structure Of A Complex With
A Planar Reaction Intermediate Analogue
pdb|2YIM|D Chain D, The Enolisation Chemistry Of A Thioester-Dependent
Racemase: The 1.4 A Crystal Structure Of A Complex With
A Planar Reaction Intermediate Analogue
Length = 360
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 135/275 (49%), Gaps = 28/275 (10%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR 279
+R+++L I GP M+L DLGA+V+++++P + D + + R
Sbjct: 8 LRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISR---------------DAMLR 52
Query: 280 NKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339
N++ V D K+ +G ++ L + DVL+E + PG +RL LG + +++N +LIY +T
Sbjct: 53 NRRIVTADLKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMT 112
Query: 340 GFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATG-LYAHGAVMAAL 398
G+G GP + G+DI S+ G+LH G D P D G ++ ++AAL
Sbjct: 113 GWGQTGPRSQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAAL 172
Query: 399 LHKYKTGKGQKIDCNLLSTQVSMLINVGANYLNAGIEGKRW-GTSHANVVP-----HQVF 452
+ +GKGQ +D ++ S+LI + G+ W T AN++ + +
Sbjct: 173 WERQSSGKGQVVDAAMVDGS-SVLIQMMWAMRATGM----WTDTRGANMLDGGAPYYDTY 227
Query: 453 KTSNG-YVTIGTGSDKQYQDMCKVMNLQHLALDPR 486
+ ++G YV +G + Y M + L L P+
Sbjct: 228 ECADGRYVAVGAIEPQFYAAMLAGLGLDAAELPPQ 262
>pdb|2G04|A Chain A, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|B Chain B, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|C Chain C, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|D Chain D, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|E Chain E, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
pdb|2G04|F Chain F, Crystal Structure Of Fatty Acid-Coa Racemase From
Mycobacterium Tuberculosis H37rv
Length = 359
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 16/197 (8%)
Query: 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR 279
V++++L I GP M+LADLGA+V++V +P T S ++R
Sbjct: 10 VKVIELGGIGPGPHAGMVLADLGADVVRVRRPG-------------GLTMPSEDRDLLHR 56
Query: 280 NKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339
K+ V +D KT Q + +LA + DVL++ F PG +RL +G + +N +LI+ +T
Sbjct: 57 GKRIVDLDVKTQP--QAMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIFARIT 114
Query: 340 GFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATG-LYAHGAVMAAL 398
G+G GP G+DI S G L G+ D PP D G + ++ AL
Sbjct: 115 GWGQDGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGIVVAL 174
Query: 399 LHKYKTGKGQKIDCNLL 415
+ ++G GQ +D ++
Sbjct: 175 YERERSGVGQVVDAAMV 191
>pdb|1XVU|A Chain A, Crystal Structure Of Caib Mutant D169a In Complex With
Coenzyme A
pdb|1XVV|A Chain A, Crystal Structure Of Caib Mutant D169a In Complex With
Carnitinyl-Coa
Length = 408
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 106/274 (38%), Gaps = 24/274 (8%)
Query: 229 IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDF 288
IAGPF + A+ GAEVI +E D R Y RN ++ ++
Sbjct: 27 IAGPFAGQMFAEWGAEVIWIENVAWADTIRV----------QPNYPQLSRRNLHALSLNI 76
Query: 289 KTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFGSKG--P 346
EG++ L + D+ +E R + + L + N +L+ ++GFG G
Sbjct: 77 FKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEE 136
Query: 347 YKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHG----AVMAALLHKY 402
Y + P Y+ IA + G L G D P T Y G A LHK
Sbjct: 137 YTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPY------TAAYFSGLTATTAALAALHKV 190
Query: 403 K-TGKGQKIDCNLLSTQVSMLINVGANYLNAGIEGKRWGTSHANVVPH-QVFKTSNGYVT 460
+ TGKG+ ID + + M +Y N G R ++K ++GY+
Sbjct: 191 RETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKCADGYIV 250
Query: 461 IGTGSDKQYQDMCKVMNLQHLALDPRYLTGALIL 494
+ Q ++ K + L HL P G ++
Sbjct: 251 MELVGITQIEECFKDIGLAHLLGTPEIPEGTQLI 284
>pdb|1XK7|A Chain A, Crystal Structure- C2 Form- Of Escherichia Coli
Crotonobetainyl-coa: Carnitine Coa Transferase (caib)
pdb|1XK7|B Chain B, Crystal Structure- C2 Form- Of Escherichia Coli
Crotonobetainyl-coa: Carnitine Coa Transferase (caib)
pdb|1XK7|C Chain C, Crystal Structure- C2 Form- Of Escherichia Coli
Crotonobetainyl-coa: Carnitine Coa Transferase (caib)
pdb|1XVT|A Chain A, Crystal Structure Of Native Caib In Complex With Coenzyme
A
Length = 408
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 106/269 (39%), Gaps = 14/269 (5%)
Query: 229 IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDF 288
IAGPF A+ GAEVI +E D R Y RN ++ ++
Sbjct: 27 IAGPFAGQXFAEWGAEVIWIENVAWADTIRV----------QPNYPQLSRRNLHALSLNI 76
Query: 289 KTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFGSKG--P 346
EG++ L + D+ +E R + + L + N +L+ ++GFG G
Sbjct: 77 FKDEGREAFLKLXETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEE 136
Query: 347 YKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALLHKYKTGK 406
Y + P Y+ IA + G L G D P + D +GL A A +AAL +TGK
Sbjct: 137 YTNLPAYNTIAQAFSGYLIQNGDVDQPXPAFPYTA-DYFSGLTATTAALAALHKVRETGK 195
Query: 407 GQKIDCNLLSTQVSMLINVGANYLNAGIEGKRWGTSHANVVPH-QVFKTSNGYVTIGTGS 465
G+ ID + +Y N G R ++K ++GY+
Sbjct: 196 GESIDIAXYEVXLRXGQYFXXDYFNGGEXCPRXSKGKDPYYAGCGLYKCADGYIVXELVG 255
Query: 466 DKQYQDMCKVMNLQHLALDPRYLTGALIL 494
Q ++ K + L HL P G ++
Sbjct: 256 ITQIEECFKDIGLAHLLGTPEIPEGTQLI 284
>pdb|1XK6|A Chain A, Crystal Structure- P1 Form- Of Escherichia Coli
Crotonobetainyl-Coa: Carnitine Coa Transferase (Caib)
pdb|1XK6|B Chain B, Crystal Structure- P1 Form- Of Escherichia Coli
Crotonobetainyl-Coa: Carnitine Coa Transferase (Caib)
pdb|1XK6|C Chain C, Crystal Structure- P1 Form- Of Escherichia Coli
Crotonobetainyl-Coa: Carnitine Coa Transferase (Caib)
pdb|1XK6|D Chain D, Crystal Structure- P1 Form- Of Escherichia Coli
Crotonobetainyl-Coa: Carnitine Coa Transferase (Caib)
Length = 408
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 106/269 (39%), Gaps = 14/269 (5%)
Query: 229 IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDF 288
IAGPF A+ GAEVI +E D R Y RN ++ ++
Sbjct: 27 IAGPFAGQXFAEWGAEVIWIENVAWADTIRV----------QPNYPQLSRRNLHALSLNI 76
Query: 289 KTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFGSKG--P 346
EG++ L + D+ +E R + + L + N +L+ ++GFG G
Sbjct: 77 FKDEGREAFLKLXETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEE 136
Query: 347 YKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALLHKYKTGK 406
Y + P Y+ IA + G L G D P + D +GL A A +AAL +TGK
Sbjct: 137 YTNLPAYNTIAQAFSGYLIQNGDVDQPXPAFPYTA-DYFSGLTATTAALAALHKVRETGK 195
Query: 407 GQKIDCNLLSTQVSMLINVGANYLNAGIEGKRWGTSHANVVPH-QVFKTSNGYVTIGTGS 465
G+ ID + +Y N G R ++K ++GY+
Sbjct: 196 GESIDIAXYEVXLRXGQYFXXDYFNGGEXCPRXSKGKDPYYAGCGLYKCADGYIVXELVG 255
Query: 466 DKQYQDMCKVMNLQHLALDPRYLTGALIL 494
Q ++ K + L HL P G ++
Sbjct: 256 ITQIEECFKDIGLAHLLGTPEIPEGTQLI 284
>pdb|1XA3|A Chain A, Crystal Structure Of Caib, A Type Iii Coa Transferase In
Carnitine Metabolism
pdb|1XA3|B Chain B, Crystal Structure Of Caib, A Type Iii Coa Transferase In
Carnitine Metabolism
pdb|1XA4|A Chain A, Crystal Structure Of Caib, A Type Iii Coa Transferase In
Carnitine Metabolism
pdb|1XA4|B Chain B, Crystal Structure Of Caib, A Type Iii Coa Transferase In
Carnitine Metabolism
Length = 437
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 106/269 (39%), Gaps = 14/269 (5%)
Query: 229 IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDF 288
IAGPF A+ GAEVI +E D R Y RN ++ ++
Sbjct: 48 IAGPFAGQXFAEWGAEVIWIENVAWADTIRV----------QPNYPQLSRRNLHALSLNI 97
Query: 289 KTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFGSKG--P 346
EG++ L + D+ +E R + + L + N +L+ ++GFG G
Sbjct: 98 FKDEGREAFLKLXETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEE 157
Query: 347 YKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALLHKYKTGK 406
Y + P Y+ IA + G L G D P + D +GL A A +AAL +TGK
Sbjct: 158 YTNLPAYNTIAQAFSGYLIQNGDVDQPXPAFPYTA-DYFSGLTATTAALAALHKVRETGK 216
Query: 407 GQKIDCNLLSTQVSMLINVGANYLNAGIEGKRWGTSHANVVPH-QVFKTSNGYVTIGTGS 465
G+ ID + +Y N G R ++K ++GY+
Sbjct: 217 GESIDIAXYEVXLRXGQYFXXDYFNGGEXCPRXSKGKDPYYAGCGLYKCADGYIVXELVG 276
Query: 466 DKQYQDMCKVMNLQHLALDPRYLTGALIL 494
Q ++ K + L HL P G ++
Sbjct: 277 ITQIEECFKDIGLAHLLGTPEIPEGTQLI 305
>pdb|2CE3|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|E Chain E, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|F Chain F, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|G Chain G, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|H Chain H, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|I Chain I, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|J Chain J, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|K Chain K, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|L Chain L, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|M Chain M, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|N Chain N, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
Length = 200
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 412 CNLLSTQVSMLINVGANYLNAGIEGKRWGTSHANVVPHQ 450
C++ + + M ++G L AG +GKR+ HA ++ HQ
Sbjct: 86 CDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQ 124
>pdb|2CBY|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|E Chain E, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|F Chain F, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|G Chain G, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
Length = 208
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 412 CNLLSTQVSMLINVGANYLNAGIEGKRWGTSHANVVPHQ 450
C++ + + M ++G L AG +GKR+ HA ++ HQ
Sbjct: 86 CDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQ 124
>pdb|2C8T|A Chain A, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|B Chain B, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|C Chain C, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|D Chain D, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|E Chain E, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|F Chain F, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|G Chain G, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|H Chain H, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|I Chain I, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|J Chain J, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|K Chain K, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|L Chain L, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|M Chain M, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|N Chain N, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
Length = 206
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 412 CNLLSTQVSMLINVGANYLNAGIEGKRWGTSHANVVPHQ 450
C++ + + M ++G L AG +GKR+ HA ++ HQ
Sbjct: 87 CDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQ 125
>pdb|3ST9|A Chain A, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|B Chain B, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|C Chain C, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|D Chain D, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|E Chain E, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|F Chain F, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|G Chain G, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3STA|V Chain V, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|A Chain A, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|B Chain B, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|C Chain C, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|E Chain E, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|F Chain F, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|G Chain G, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|I Chain I, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|K Chain K, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|L Chain L, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|M Chain M, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|N Chain N, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|S Chain S, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|T Chain T, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
Length = 197
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 408 QKIDCNLLSTQVSMLINVGANYLNAGIEGKRWGTSHANVVPHQVFKTSNGYVT 460
Q I ++ + + M ++G+ L AG +GKR+ +A V+ HQ + G T
Sbjct: 84 QHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQAT 136
>pdb|3QWD|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|B Chain B, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|C Chain C, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|D Chain D, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|E Chain E, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|F Chain F, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|G Chain G, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|H Chain H, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|I Chain I, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|J Chain J, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|K Chain K, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|L Chain L, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|M Chain M, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|N Chain N, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3V5E|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|B Chain B, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|C Chain C, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|D Chain D, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|E Chain E, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|F Chain F, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|G Chain G, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|H Chain H, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|I Chain I, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|J Chain J, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|K Chain K, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|L Chain L, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|M Chain M, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|N Chain N, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
Length = 203
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 408 QKIDCNLLSTQVSMLINVGANYLNAGIEGKRWGTSHANVVPHQVFKTSNGYVT 460
Q I ++ + + M ++G+ L AG +GKR+ +A V+ HQ + G T
Sbjct: 82 QHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQAT 134
>pdb|3CYN|A Chain A, The Structure Of Human Gpx8
pdb|3CYN|B Chain B, The Structure Of Human Gpx8
pdb|3CYN|C Chain C, The Structure Of Human Gpx8
Length = 189
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 380 ASIDLAT-GLYAHGAVMAALLHKYKTGKGQKIDCNLLSTQVSMLINVGA-------NYLN 431
+ +DL T LY + + + K KG+ + +VS+++NV + NYL
Sbjct: 9 SGVDLGTENLYFQSMINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLG 68
Query: 432 AGIEGKRWGTSHANVV 447
K +G SH +V+
Sbjct: 69 LKELHKEFGPSHFSVL 84
>pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|B Chain B, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|C Chain C, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|D Chain D, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|E Chain E, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|F Chain F, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|G Chain G, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
Length = 197
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 419 VSMLINVGANYLNAGIEGKRWGTSHANVVPHQVFKTSNGYVT 460
+ M ++GA L AG +GKR+ ++ V+ HQ + G T
Sbjct: 93 IGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQAT 134
>pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|B Chain B, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|C Chain C, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|D Chain D, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|E Chain E, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|F Chain F, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|G Chain G, Structure Of Clpp From Bacillus Subtilis In Compressed
State
Length = 196
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 419 VSMLINVGANYLNAGIEGKRWGTSHANVVPHQVFKTSNGYVT 460
+ M ++GA L AG +GKR+ ++ V+ HQ + G T
Sbjct: 92 IGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQAT 133
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 260 WGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIKDLAKQ---CDVLVENFVPGKL 316
+ P L+ L+ FT + +C D P + + D+ + D L NF K
Sbjct: 145 FNSPLLDGKALTEIFTQAKARQXIICADXIKPRLNETLDDICEALSYVDYLFPNFAEAK- 203
Query: 317 DRLNLGYKHLSEINSQLIYCSV 338
L G + L EI + C V
Sbjct: 204 --LLTGKETLDEIADCFLACGV 223
>pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|B Chain B, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|C Chain C, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|D Chain D, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|E Chain E, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|F Chain F, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|G Chain G, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTH|A Chain A, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|B Chain B, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|C Chain C, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|D Chain D, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|E Chain E, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|F Chain F, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|G Chain G, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
Length = 199
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 419 VSMLINVGANYLNAGIEGKRWGTSHANVVPHQVFKTSNGYVT 460
+ M ++GA L AG +GKR+ ++ V+ HQ + G T
Sbjct: 92 IGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQAT 133
>pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1
pdb|3KTI|B Chain B, Structure Of Clpp In Complex With Adep1
pdb|3KTI|C Chain C, Structure Of Clpp In Complex With Adep1
pdb|3KTI|D Chain D, Structure Of Clpp In Complex With Adep1
pdb|3KTI|E Chain E, Structure Of Clpp In Complex With Adep1
pdb|3KTI|F Chain F, Structure Of Clpp In Complex With Adep1
pdb|3KTI|G Chain G, Structure Of Clpp In Complex With Adep1
pdb|3KTJ|A Chain A, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|B Chain B, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|C Chain C, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|D Chain D, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|E Chain E, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|F Chain F, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|G Chain G, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTK|A Chain A, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|B Chain B, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|C Chain C, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|D Chain D, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|E Chain E, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|F Chain F, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|G Chain G, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|H Chain H, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|I Chain I, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|J Chain J, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|K Chain K, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|L Chain L, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|M Chain M, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|N Chain N, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
Length = 199
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 419 VSMLINVGANYLNAGIEGKRWGTSHANVVPHQVFKTSNGYVT 460
+ M ++GA L AG +GKR+ ++ V+ HQ + G T
Sbjct: 92 IGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQAT 133
>pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|B Chain B, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|C Chain C, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|D Chain D, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|E Chain E, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|F Chain F, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|G Chain G, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|H Chain H, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|I Chain I, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|J Chain J, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|K Chain K, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|L Chain L, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|M Chain M, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|N Chain N, Crystal Structure Of H.Pylori Clpp
pdb|2ZL2|A Chain A, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|B Chain B, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|C Chain C, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|D Chain D, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|E Chain E, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|F Chain F, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|G Chain G, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|H Chain H, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|I Chain I, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|J Chain J, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|K Chain K, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|L Chain L, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|M Chain M, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|N Chain N, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
Length = 196
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 387 GLYAH--GAVMAALLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLNAGIEGKRWGTSHA 444
GLY + G V+ + L Y T + D + + + ++GA L+ G +GKR+ H+
Sbjct: 62 GLYINSPGGVITSGLSIYDTMNFIRPDVSTIC--IGQAASMGAFLLSCGAKGKRFSLPHS 119
Query: 445 NVVPHQVFKTSNGYVT 460
++ HQ + G +
Sbjct: 120 RIMIHQPLGGAQGQAS 135
>pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|B Chain B, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|C Chain C, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|D Chain D, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|E Chain E, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|F Chain F, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|G Chain G, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|H Chain H, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|I Chain I, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|J Chain J, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|K Chain K, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|L Chain L, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|M Chain M, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|N Chain N, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL4|A Chain A, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|B Chain B, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|C Chain C, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|D Chain D, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|E Chain E, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|F Chain F, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|G Chain G, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|H Chain H, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|I Chain I, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|J Chain J, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|K Chain K, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|L Chain L, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|M Chain M, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|N Chain N, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
Length = 196
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 387 GLYAH--GAVMAALLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLNAGIEGKRWGTSHA 444
GLY + G V+ + L Y T + D + + + +GA L+ G +GKR+ H+
Sbjct: 62 GLYINSPGGVITSGLSIYDTMNFIRPDVSTIC--IGQAAAMGAFLLSCGAKGKRFSLPHS 119
Query: 445 NVVPHQVFKTSNGYVT 460
++ HQ + G +
Sbjct: 120 RIMIHQPLGGAQGQAS 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,085,120
Number of Sequences: 62578
Number of extensions: 573574
Number of successful extensions: 1616
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1524
Number of HSP's gapped (non-prelim): 60
length of query: 501
length of database: 14,973,337
effective HSP length: 103
effective length of query: 398
effective length of database: 8,527,803
effective search space: 3394065594
effective search space used: 3394065594
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)