Query psy16437
Match_columns 501
No_of_seqs 517 out of 2587
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 21:15:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11430 putative CoA-transfer 100.0 4E-80 8.6E-85 643.3 32.1 284 214-500 7-290 (381)
2 COG1804 CaiB Predicted acyl-Co 100.0 1E-79 2.2E-84 634.2 28.2 284 214-501 5-289 (396)
3 PRK05398 formyl-coenzyme A tra 100.0 1.9E-76 4.2E-81 623.0 30.2 284 214-500 2-308 (416)
4 PRK03525 crotonobetainyl-CoA:c 100.0 4E-76 8.6E-81 618.2 30.5 276 214-500 9-292 (405)
5 TIGR03253 oxalate_frc formyl-C 100.0 5.9E-76 1.3E-80 619.5 30.8 283 215-500 2-307 (415)
6 KOG3957|consensus 100.0 1.4E-58 3E-63 450.3 21.4 267 215-500 3-271 (387)
7 PF02515 CoA_transf_3: CoA-tra 100.0 1.3E-52 2.8E-57 398.5 20.2 189 284-472 1-191 (191)
8 TIGR03253 oxalate_frc formyl-C 99.9 2.7E-26 5.8E-31 242.4 13.6 137 1-139 279-415 (415)
9 PRK05398 formyl-coenzyme A tra 99.9 2.7E-26 5.8E-31 242.3 13.5 137 1-139 280-416 (416)
10 PRK03525 crotonobetainyl-CoA:c 99.9 2.5E-25 5.5E-30 234.0 13.0 140 1-141 259-403 (405)
11 COG1804 CaiB Predicted acyl-Co 99.9 3.2E-25 7E-30 229.6 11.3 137 1-139 260-396 (396)
12 PRK11430 putative CoA-transfer 99.9 1.5E-21 3.2E-26 203.9 11.9 117 1-122 262-379 (381)
13 KOG3957|consensus 99.7 3.4E-18 7.3E-23 168.0 8.0 135 7-141 249-383 (387)
14 PF00670 AdoHcyase_NAD: S-aden 93.8 0.21 4.6E-06 46.2 7.1 95 215-342 19-113 (162)
15 PF01262 AlaDh_PNT_C: Alanine 92.1 0.29 6.2E-06 45.4 5.5 108 216-341 17-141 (168)
16 PRK04148 hypothetical protein; 87.0 3.4 7.4E-05 37.0 8.0 97 218-340 16-112 (134)
17 PF02826 2-Hacid_dh_C: D-isome 86.3 1.6 3.5E-05 40.8 5.9 96 215-339 32-127 (178)
18 TIGR00518 alaDH alanine dehydr 85.2 7 0.00015 41.1 10.7 108 217-346 165-273 (370)
19 TIGR00561 pntA NAD(P) transhyd 81.7 11 0.00023 41.5 10.4 108 216-341 161-286 (511)
20 KOG2422|consensus 79.8 0.61 1.3E-05 50.8 0.2 9 328-336 317-325 (665)
21 COG2227 UbiG 2-polyprenyl-3-me 78.9 3.4 7.4E-05 40.6 5.0 71 217-310 58-131 (243)
22 PRK08306 dipicolinate synthase 78.6 12 0.00026 38.1 9.2 96 215-341 148-243 (296)
23 PRK06487 glycerate dehydrogena 78.5 14 0.0003 38.0 9.7 90 215-339 144-233 (317)
24 PF04127 DFP: DNA / pantothena 75.9 10 0.00022 35.9 7.2 75 215-312 15-91 (185)
25 COG0499 SAM1 S-adenosylhomocys 75.1 12 0.00026 39.0 7.9 94 215-341 205-298 (420)
26 PRK06932 glycerate dehydrogena 74.7 13 0.00027 38.3 8.2 91 215-339 143-233 (314)
27 PRK13243 glyoxylate reductase; 74.1 16 0.00034 37.9 8.8 94 215-339 146-240 (333)
28 PRK15409 bifunctional glyoxyla 71.7 20 0.00042 37.0 8.7 95 215-339 141-236 (323)
29 PLN02494 adenosylhomocysteinas 69.9 26 0.00057 38.0 9.4 94 215-342 250-344 (477)
30 TIGR02853 spore_dpaA dipicolin 69.7 39 0.00084 34.2 10.3 95 216-341 148-242 (287)
31 PLN02928 oxidoreductase family 69.1 30 0.00065 36.0 9.5 120 215-360 155-276 (347)
32 KOG2422|consensus 68.9 1.6 3.4E-05 47.7 0.0 8 148-155 77-84 (665)
33 PF01488 Shikimate_DH: Shikima 68.3 16 0.00035 32.3 6.4 100 216-339 9-109 (135)
34 PRK08410 2-hydroxyacid dehydro 67.8 31 0.00066 35.3 9.2 92 215-339 141-232 (311)
35 PTZ00075 Adenosylhomocysteinas 67.6 32 0.0007 37.4 9.5 94 215-341 250-343 (476)
36 PRK06436 glycerate dehydrogena 66.3 44 0.00096 34.1 9.9 92 215-339 118-209 (303)
37 cd01078 NAD_bind_H4MPT_DH NADP 65.6 18 0.00039 33.9 6.6 106 216-343 25-133 (194)
38 TIGR00521 coaBC_dfp phosphopan 65.2 20 0.00043 38.0 7.3 77 214-313 196-275 (390)
39 PRK05476 S-adenosyl-L-homocyst 65.0 37 0.00079 36.5 9.3 94 216-342 209-302 (425)
40 PRK07060 short chain dehydroge 65.0 42 0.0009 32.0 9.2 81 215-312 5-86 (245)
41 PRK14191 bifunctional 5,10-met 64.8 1.7E+02 0.0036 29.8 14.1 122 215-397 153-277 (285)
42 COG0686 Ald Alanine dehydrogen 64.7 23 0.0005 36.3 7.2 100 220-340 169-269 (371)
43 cd05311 NAD_bind_2_malic_enz N 63.8 9 0.00019 37.4 4.2 105 215-339 21-128 (226)
44 TIGR02085 meth_trns_rumB 23S r 63.5 12 0.00026 39.3 5.4 99 217-339 232-335 (374)
45 PRK15469 ghrA bifunctional gly 62.9 24 0.00052 36.2 7.3 94 216-339 133-226 (312)
46 cd03088 ManB ManB is a bacteri 62.1 32 0.0007 37.2 8.4 34 217-250 163-197 (459)
47 TIGR00869 sec62 protein transl 61.2 4.8 0.0001 39.4 1.7 6 137-142 194-199 (232)
48 PLN02342 ornithine carbamoyltr 61.1 46 0.001 34.8 9.0 101 215-338 190-306 (348)
49 PRK06732 phosphopantothenate-- 61.0 33 0.00072 33.4 7.6 80 214-313 11-91 (229)
50 PRK09424 pntA NAD(P) transhydr 60.6 61 0.0013 35.7 10.2 108 216-341 162-287 (509)
51 PRK12480 D-lactate dehydrogena 60.0 21 0.00046 36.8 6.4 109 215-364 142-253 (330)
52 PRK00779 ornithine carbamoyltr 59.4 72 0.0016 32.6 10.0 101 215-338 148-264 (304)
53 TIGR00936 ahcY adenosylhomocys 58.8 43 0.00094 35.7 8.5 94 216-342 192-285 (406)
54 PRK02102 ornithine carbamoyltr 58.0 56 0.0012 33.9 8.9 107 215-338 151-272 (331)
55 PF02879 PGM_PMM_II: Phosphogl 56.9 49 0.0011 27.6 7.1 31 221-251 24-54 (104)
56 TIGR00670 asp_carb_tr aspartat 56.2 67 0.0015 32.8 9.1 103 215-340 146-264 (301)
57 PRK11790 D-3-phosphoglycerate 56.0 45 0.00098 35.5 8.2 93 215-339 147-239 (409)
58 PRK03522 rumB 23S rRNA methylu 55.7 18 0.0004 36.9 5.0 32 217-250 172-203 (315)
59 PRK08261 fabG 3-ketoacyl-(acyl 55.1 82 0.0018 33.6 10.1 84 214-312 205-293 (450)
60 COG2521 Predicted archaeal met 55.0 26 0.00055 34.6 5.4 80 214-311 130-213 (287)
61 COG1052 LdhA Lactate dehydroge 54.9 81 0.0018 32.6 9.5 114 215-365 142-256 (324)
62 cd01080 NAD_bind_m-THF_DH_Cycl 54.0 44 0.00096 31.0 6.8 76 215-339 40-116 (168)
63 PRK07574 formate dehydrogenase 53.8 41 0.00089 35.6 7.3 95 215-339 188-284 (385)
64 PRK06079 enoyl-(acyl carrier p 52.8 85 0.0018 30.4 9.1 82 215-312 3-92 (252)
65 PRK06523 short chain dehydroge 52.7 1E+02 0.0022 29.7 9.6 77 215-312 5-86 (260)
66 PF13945 NST1: Salt tolerance 52.3 3.2 7E-05 39.4 -1.1 7 336-342 142-148 (190)
67 PRK00856 pyrB aspartate carbam 52.1 85 0.0018 32.1 9.1 96 215-340 152-263 (305)
68 TIGR01327 PGDH D-3-phosphoglyc 52.0 61 0.0013 35.7 8.6 95 215-339 134-229 (525)
69 TIGR01861 ANFD nitrogenase iro 51.8 74 0.0016 35.1 9.2 115 216-361 325-444 (513)
70 PRK12562 ornithine carbamoyltr 51.6 65 0.0014 33.4 8.2 106 216-338 153-274 (334)
71 PRK08605 D-lactate dehydrogena 50.7 67 0.0015 33.2 8.2 94 215-339 142-236 (332)
72 cd01976 Nitrogenase_MoFe_alpha 50.6 98 0.0021 33.1 9.7 35 215-249 296-330 (421)
73 TIGR01283 nifE nitrogenase mol 50.0 80 0.0017 34.1 9.0 36 215-250 322-357 (456)
74 PRK14194 bifunctional 5,10-met 49.2 71 0.0015 32.7 7.9 76 215-339 155-231 (301)
75 PRK06852 aldolase; Validated 48.5 9.1 0.0002 39.1 1.4 21 232-252 191-211 (304)
76 PLN02985 squalene monooxygenas 47.9 28 0.00061 38.3 5.2 32 220-251 44-75 (514)
77 PLN03139 formate dehydrogenase 47.7 79 0.0017 33.5 8.3 95 215-339 195-291 (386)
78 TIGR00658 orni_carb_tr ornithi 46.9 1E+02 0.0023 31.4 8.8 107 215-338 144-263 (304)
79 PLN02306 hydroxypyruvate reduc 46.8 75 0.0016 33.7 8.0 125 215-362 161-289 (386)
80 PRK04284 ornithine carbamoyltr 46.7 91 0.002 32.3 8.4 107 215-338 151-273 (332)
81 KOG1270|consensus 46.4 16 0.00034 36.6 2.6 34 215-250 86-119 (282)
82 cd00401 AdoHcyase S-adenosyl-L 46.3 1.3E+02 0.0028 32.3 9.6 92 215-340 198-290 (413)
83 PRK15438 erythronate-4-phospha 46.2 99 0.0021 32.7 8.7 92 215-339 112-207 (378)
84 COG4017 Uncharacterized protei 46.2 68 0.0015 30.7 6.6 86 217-337 43-128 (254)
85 PRK07533 enoyl-(acyl carrier p 46.0 1E+02 0.0022 30.0 8.4 84 215-311 6-96 (258)
86 PLN02527 aspartate carbamoyltr 45.5 1.5E+02 0.0032 30.4 9.7 103 215-338 147-265 (306)
87 PRK00257 erythronate-4-phospha 45.2 1E+02 0.0023 32.6 8.7 92 215-339 112-207 (381)
88 PRK13581 D-3-phosphoglycerate 45.2 81 0.0018 34.8 8.3 93 216-339 137-230 (526)
89 PF04189 Gcd10p: Gcd10p family 44.9 22 0.00047 36.3 3.4 28 112-139 93-122 (299)
90 PRK02255 putrescine carbamoylt 44.7 77 0.0017 33.0 7.5 104 216-340 151-273 (338)
91 PRK05579 bifunctional phosphop 44.3 78 0.0017 33.7 7.7 75 215-312 200-276 (399)
92 KOG2775|consensus 43.9 9.3 0.0002 38.6 0.6 11 219-229 109-119 (397)
93 PF00148 Oxidored_nitro: Nitro 43.7 88 0.0019 32.8 8.0 80 216-337 268-348 (398)
94 PRK07889 enoyl-(acyl carrier p 43.7 1.1E+02 0.0023 29.8 8.2 84 216-312 4-94 (256)
95 PRK12548 shikimate 5-dehydroge 43.6 99 0.0021 31.2 8.0 88 216-315 123-211 (289)
96 PRK06841 short chain dehydroge 43.5 1.4E+02 0.003 28.6 8.9 82 216-313 12-99 (255)
97 PRK11891 aspartate carbamoyltr 43.2 1.2E+02 0.0027 32.6 8.9 102 216-338 238-354 (429)
98 PRK05717 oxidoreductase; Valid 43.1 1.5E+02 0.0034 28.4 9.2 83 215-312 6-93 (255)
99 COG0111 SerA Phosphoglycerate 43.0 94 0.002 32.1 7.8 110 216-362 139-250 (324)
100 PRK12858 tagatose 1,6-diphosph 42.9 19 0.00042 37.4 2.7 21 232-252 187-209 (340)
101 PRK01713 ornithine carbamoyltr 42.5 1E+02 0.0022 32.0 8.0 108 216-340 153-276 (334)
102 PRK12809 putative oxidoreducta 41.7 57 0.0012 36.9 6.5 37 216-252 307-343 (639)
103 cd01065 NAD_bind_Shikimate_DH 41.1 1.2E+02 0.0025 26.8 7.4 99 217-341 17-118 (155)
104 PRK08177 short chain dehydroge 41.0 1.1E+02 0.0024 28.9 7.6 66 230-312 13-80 (225)
105 PRK03515 ornithine carbamoyltr 40.1 1.3E+02 0.0028 31.3 8.3 108 216-340 153-276 (336)
106 TIGR02622 CDP_4_6_dhtase CDP-g 39.9 1.7E+02 0.0037 29.8 9.4 78 217-312 2-84 (349)
107 PRK14192 bifunctional 5,10-met 39.6 1.4E+02 0.0031 30.1 8.4 75 215-339 155-231 (283)
108 PRK07985 oxidoreductase; Provi 39.5 1.4E+02 0.003 29.8 8.4 87 216-312 46-137 (294)
109 PRK09620 hypothetical protein; 39.5 1.6E+02 0.0035 28.7 8.5 39 214-252 14-53 (229)
110 PRK08227 autoinducer 2 aldolas 39.4 21 0.00045 35.8 2.3 20 232-251 161-180 (264)
111 PRK14175 bifunctional 5,10-met 39.3 4.3E+02 0.0093 26.8 13.7 77 215-340 154-231 (286)
112 PRK12829 short chain dehydroge 39.1 1.6E+02 0.0035 28.2 8.6 82 216-313 8-96 (264)
113 PF00185 OTCace: Aspartate/orn 38.7 1.3E+02 0.0028 27.5 7.3 108 218-340 1-121 (158)
114 PRK08063 enoyl-(acyl carrier p 38.6 1.2E+02 0.0027 28.8 7.6 86 217-313 2-92 (250)
115 PRK08264 short chain dehydroge 38.4 1.8E+02 0.004 27.4 8.8 77 218-313 5-83 (238)
116 PRK06550 fabG 3-ketoacyl-(acyl 38.0 1.1E+02 0.0023 29.0 7.0 72 217-312 3-76 (235)
117 COG4221 Short-chain alcohol de 38.0 94 0.002 30.8 6.5 66 231-311 19-89 (246)
118 TIGR02114 coaB_strep phosphopa 37.8 1.1E+02 0.0024 29.7 7.1 75 214-312 10-89 (227)
119 PRK09250 fructose-bisphosphate 37.7 25 0.00055 36.5 2.6 21 232-252 220-240 (348)
120 COG1830 FbaB DhnA-type fructos 37.5 20 0.00044 35.8 1.8 21 232-252 169-189 (265)
121 CHL00073 chlN photochlorophyll 37.1 2E+02 0.0044 31.2 9.5 85 216-338 311-399 (457)
122 PRK06463 fabG 3-ketoacyl-(acyl 36.6 3E+02 0.0065 26.3 10.1 80 216-312 4-88 (255)
123 TIGR01282 nifD nitrogenase mol 36.5 1.5E+02 0.0032 32.3 8.4 34 215-248 331-364 (466)
124 PRK06949 short chain dehydroge 36.0 1.8E+02 0.004 27.7 8.5 86 215-312 5-95 (258)
125 PF07139 DUF1387: Protein of u 35.9 6.1 0.00013 40.1 -2.1 20 161-180 7-26 (302)
126 cd05801 PGM_like3 This bacteri 35.5 69 0.0015 35.3 5.8 34 217-250 208-242 (522)
127 PF01494 FAD_binding_3: FAD bi 35.4 43 0.00093 33.6 4.0 31 221-251 3-33 (356)
128 PRK07067 sorbitol dehydrogenas 35.3 99 0.0021 29.8 6.4 81 217-312 4-89 (257)
129 PRK14478 nitrogenase molybdenu 35.0 2.6E+02 0.0055 30.5 10.0 36 216-251 321-356 (475)
130 COG0644 FixC Dehydrogenases (f 34.9 43 0.00092 35.3 4.0 30 221-250 5-34 (396)
131 smart00540 LEM in nuclear memb 34.9 24 0.00052 25.3 1.4 26 37-62 3-28 (44)
132 PLN02371 phosphoglucosamine mu 34.8 54 0.0012 36.7 4.9 31 216-246 260-291 (583)
133 PRK06125 short chain dehydroge 34.7 1.5E+02 0.0033 28.5 7.7 85 216-312 4-90 (259)
134 cd05212 NAD_bind_m-THF_DH_Cycl 34.5 1.6E+02 0.0035 26.4 7.1 74 215-337 24-98 (140)
135 TIGR00869 sec62 protein transl 34.5 19 0.00041 35.3 1.1 10 71-80 63-72 (232)
136 PRK12745 3-ketoacyl-(acyl-carr 34.2 1.2E+02 0.0025 29.1 6.7 70 231-311 15-88 (256)
137 PRK14188 bifunctional 5,10-met 34.1 2E+02 0.0043 29.3 8.5 75 215-340 154-231 (296)
138 PLN02427 UDP-apiose/xylose syn 34.1 3.3E+02 0.0072 28.2 10.5 84 215-312 10-95 (386)
139 PRK12742 oxidoreductase; Provi 33.9 2.4E+02 0.0051 26.5 8.7 81 216-312 3-84 (237)
140 PRK06398 aldose dehydrogenase; 33.8 2.9E+02 0.0062 26.7 9.5 73 216-311 3-80 (258)
141 PF00994 MoCF_biosynth: Probab 33.7 66 0.0014 28.6 4.5 48 230-312 18-65 (144)
142 PRK07774 short chain dehydroge 33.7 2.5E+02 0.0054 26.6 8.9 82 216-312 3-92 (250)
143 PRK14619 NAD(P)H-dependent gly 33.7 1.6E+02 0.0035 29.8 7.8 77 219-339 4-82 (308)
144 PRK14179 bifunctional 5,10-met 33.6 5.2E+02 0.011 26.2 13.0 75 215-339 154-230 (284)
145 PRK08159 enoyl-(acyl carrier p 33.5 1.9E+02 0.0041 28.5 8.2 84 215-312 6-97 (272)
146 cd01979 Pchlide_reductase_N Pc 33.4 98 0.0021 32.7 6.4 37 215-251 272-308 (396)
147 PRK06171 sorbitol-6-phosphate 33.2 1.3E+02 0.0027 29.2 6.8 75 217-312 7-86 (266)
148 PRK06172 short chain dehydroge 33.2 1.8E+02 0.004 27.7 7.9 85 216-312 4-93 (253)
149 cd01079 NAD_bind_m-THF_DH NAD 33.1 1.4E+02 0.0029 28.7 6.6 99 215-340 58-157 (197)
150 PRK13814 pyrB aspartate carbam 33.1 2.4E+02 0.0052 29.0 8.9 95 215-337 153-262 (310)
151 PRK12771 putative glutamate sy 33.1 96 0.0021 34.4 6.5 36 215-250 133-168 (564)
152 PRK06128 oxidoreductase; Provi 33.0 1.8E+02 0.004 28.9 8.1 88 215-312 51-143 (300)
153 KOG0029|consensus 32.6 50 0.0011 36.2 4.1 36 217-252 13-48 (501)
154 PRK05875 short chain dehydroge 32.5 2.6E+02 0.0056 27.1 9.0 85 216-312 4-95 (276)
155 PRK08993 2-deoxy-D-gluconate 3 32.4 78 0.0017 30.6 5.1 82 217-312 8-94 (253)
156 PRK00258 aroE shikimate 5-dehy 32.3 1.3E+02 0.0028 30.1 6.7 35 216-250 120-155 (278)
157 TIGR03316 ygeW probable carbam 32.3 2E+02 0.0043 30.2 8.3 105 217-338 168-312 (357)
158 cd01968 Nitrogenase_NifE_I Nit 32.3 2.9E+02 0.0063 29.2 9.8 35 216-251 284-319 (410)
159 TIGR02028 ChlP geranylgeranyl 32.2 52 0.0011 34.7 4.1 31 220-250 1-31 (398)
160 PRK05872 short chain dehydroge 32.2 2.4E+02 0.0052 28.0 8.8 83 215-312 5-94 (296)
161 PRK05693 short chain dehydroge 32.2 1.7E+02 0.0036 28.6 7.5 64 231-312 14-81 (274)
162 PRK08265 short chain dehydroge 32.1 3.9E+02 0.0085 25.7 10.1 81 217-312 4-89 (261)
163 PRK07097 gluconate 5-dehydroge 32.1 1.9E+02 0.0041 28.0 7.9 85 216-312 7-96 (265)
164 PRK06057 short chain dehydroge 32.0 2.6E+02 0.0057 26.8 8.8 78 216-311 4-87 (255)
165 PRK13394 3-hydroxybutyrate deh 31.7 2.2E+02 0.0048 27.2 8.2 84 217-312 5-93 (262)
166 PLN02612 phytoene desaturase 31.4 59 0.0013 36.2 4.5 37 215-251 89-125 (567)
167 PRK08324 short chain dehydroge 31.4 1.9E+02 0.0041 32.9 8.7 85 213-312 416-507 (681)
168 PRK08192 aspartate carbamoyltr 31.3 3E+02 0.0064 28.6 9.3 100 216-338 156-273 (338)
169 PRK00045 hemA glutamyl-tRNA re 31.1 2.5E+02 0.0054 30.0 9.1 97 216-340 179-281 (423)
170 PLN02396 hexaprenyldihydroxybe 30.7 63 0.0014 33.3 4.3 34 215-250 128-161 (322)
171 PRK12481 2-deoxy-D-gluconate 3 30.6 1.8E+02 0.0038 28.1 7.3 83 216-312 5-92 (251)
172 PRK06114 short chain dehydroge 30.4 3E+02 0.0066 26.3 9.0 86 216-312 5-95 (254)
173 PRK06483 dihydromonapterin red 30.3 2.1E+02 0.0046 27.0 7.7 65 231-312 15-83 (236)
174 PRK08594 enoyl-(acyl carrier p 30.3 3E+02 0.0065 26.7 9.0 83 216-311 4-95 (257)
175 cd05805 MPG1_transferase GTP-m 30.3 67 0.0014 34.4 4.6 34 217-250 166-200 (441)
176 PLN02730 enoyl-[acyl-carrier-p 30.1 3.2E+02 0.007 27.7 9.3 32 216-247 6-40 (303)
177 TIGR02632 RhaD_aldol-ADH rhamn 30.1 2.6E+02 0.0055 32.0 9.4 97 201-312 395-502 (676)
178 KOG3962|consensus 30.1 24 0.00051 34.3 0.9 13 215-227 44-56 (246)
179 PRK14317 glmM phosphoglucosami 30.0 73 0.0016 34.5 4.8 39 217-257 186-225 (465)
180 KOG1416|consensus 29.8 55 0.0012 35.0 3.6 63 111-173 99-165 (475)
181 PRK05867 short chain dehydroge 29.6 1.9E+02 0.0041 27.8 7.3 85 216-312 6-95 (253)
182 COG0300 DltE Short-chain dehyd 29.5 91 0.002 31.3 5.0 66 231-311 19-92 (265)
183 PRK06935 2-deoxy-D-gluconate 3 29.4 2E+02 0.0044 27.6 7.5 83 216-312 12-100 (258)
184 PF10278 Med19: Mediator of RN 29.3 30 0.00066 32.4 1.5 8 31-38 29-36 (178)
185 PLN02489 homocysteine S-methyl 28.7 1.6E+02 0.0034 30.6 6.8 41 285-325 48-93 (335)
186 PF05874 PBAN: Pheromone biosy 28.7 30 0.00065 32.2 1.3 36 274-311 42-77 (195)
187 PRK08415 enoyl-(acyl carrier p 28.6 2.3E+02 0.005 28.0 7.8 82 217-312 3-92 (274)
188 PRK15181 Vi polysaccharide bio 28.5 3.1E+02 0.0068 28.0 9.1 88 215-312 11-99 (348)
189 PF13651 EcoRI_methylase: Aden 28.5 40 0.00087 34.7 2.3 25 286-314 122-146 (336)
190 PRK08217 fabG 3-ketoacyl-(acyl 28.3 2.1E+02 0.0045 27.1 7.3 82 217-312 3-91 (253)
191 cd05213 NAD_bind_Glutamyl_tRNA 28.2 2.1E+02 0.0045 29.1 7.6 98 216-340 175-274 (311)
192 COG3684 LacD Tagatose-1,6-bisp 28.1 41 0.00089 33.5 2.2 22 233-254 190-211 (306)
193 cd03089 PMM_PGM The phosphoman 28.1 1.6E+02 0.0035 31.5 7.0 33 218-250 162-195 (443)
194 PRK12823 benD 1,6-dihydroxycyc 27.9 2E+02 0.0044 27.5 7.2 84 216-312 5-93 (260)
195 PF00890 FAD_binding_2: FAD bi 27.9 65 0.0014 33.8 3.9 31 222-252 2-32 (417)
196 PRK12367 short chain dehydroge 27.3 3.2E+02 0.0069 26.5 8.5 77 216-312 11-88 (245)
197 PRK08005 epimerase; Validated 27.3 2.4E+02 0.0053 27.2 7.4 78 235-332 74-163 (210)
198 PRK14477 bifunctional nitrogen 27.2 3.3E+02 0.0072 32.4 9.9 114 216-359 317-433 (917)
199 PRK07041 short chain dehydroge 27.1 1.6E+02 0.0036 27.6 6.3 67 231-312 10-78 (230)
200 cd00885 cinA Competence-damage 27.1 1.4E+02 0.003 27.7 5.6 26 221-250 15-40 (170)
201 PRK06196 oxidoreductase; Provi 27.0 2.9E+02 0.0064 27.6 8.4 82 215-312 22-108 (315)
202 PRK12859 3-ketoacyl-(acyl-carr 26.9 2.7E+02 0.0059 26.8 7.9 94 216-312 3-105 (256)
203 PRK12748 3-ketoacyl-(acyl-carr 26.9 3E+02 0.0066 26.3 8.3 94 216-312 2-104 (256)
204 PRK12769 putative oxidoreducta 26.8 1.2E+02 0.0025 34.5 5.9 36 216-251 324-359 (654)
205 PHA00451 protein kinase 26.8 2.8E+02 0.0061 28.1 7.6 44 87-142 206-249 (362)
206 PF13561 adh_short_C2: Enoyl-( 26.7 1.3E+02 0.0028 28.7 5.6 69 231-312 9-82 (241)
207 COG3349 Uncharacterized conser 26.5 71 0.0015 34.8 3.9 31 220-250 1-31 (485)
208 TIGR03206 benzo_BadH 2-hydroxy 26.4 2.5E+02 0.0053 26.6 7.5 84 217-312 1-89 (250)
209 PRK14805 ornithine carbamoyltr 26.4 2.7E+02 0.0059 28.4 7.9 38 215-252 143-181 (302)
210 PRK12826 3-ketoacyl-(acyl-carr 26.4 3.1E+02 0.0068 25.8 8.2 81 217-312 4-92 (251)
211 COG0654 UbiH 2-polyprenyl-6-me 26.4 1.3E+02 0.0029 31.3 6.0 31 220-250 3-33 (387)
212 PLN02896 cinnamyl-alcohol dehy 26.2 2.6E+02 0.0056 28.5 8.0 78 218-313 9-89 (353)
213 PRK07792 fabG 3-ketoacyl-(acyl 25.9 3.6E+02 0.0077 27.0 8.8 84 214-311 7-97 (306)
214 PRK08589 short chain dehydroge 25.9 1.2E+02 0.0025 29.8 5.1 82 217-312 4-91 (272)
215 smart00852 MoCF_biosynth Proba 25.8 2.5E+02 0.0055 24.5 6.8 64 230-329 19-82 (135)
216 PRK05884 short chain dehydroge 25.7 2E+02 0.0044 27.2 6.7 65 231-312 13-78 (223)
217 TIGR01279 DPOR_bchN light-inde 25.6 6.9E+02 0.015 26.4 11.2 37 216-252 271-307 (407)
218 PRK05476 S-adenosyl-L-homocyst 25.5 77 0.0017 34.1 3.9 37 214-250 43-80 (425)
219 PRK06182 short chain dehydroge 25.5 2.5E+02 0.0054 27.3 7.4 65 231-313 16-84 (273)
220 TIGR01832 kduD 2-deoxy-D-gluco 25.3 3.7E+02 0.008 25.4 8.5 81 217-311 3-88 (248)
221 PRK06200 2,3-dihydroxy-2,3-dih 25.3 1.8E+02 0.004 28.0 6.4 80 217-312 4-89 (263)
222 PRK06701 short chain dehydroge 25.3 3E+02 0.0065 27.3 8.0 84 215-312 42-133 (290)
223 PRK06500 short chain dehydroge 25.2 1.9E+02 0.0041 27.4 6.3 81 217-312 4-89 (249)
224 PRK08690 enoyl-(acyl carrier p 25.0 2.7E+02 0.0059 27.0 7.5 82 217-312 4-93 (261)
225 PRK06139 short chain dehydroge 25.0 2.9E+02 0.0063 28.2 8.0 83 216-312 4-93 (330)
226 PF10500 SR-25: Nuclear RNA-sp 24.9 46 0.00099 32.3 1.8 8 324-331 200-207 (225)
227 PRK08303 short chain dehydroge 24.9 2.7E+02 0.0058 28.1 7.6 92 215-311 4-103 (305)
228 PRK02842 light-independent pro 24.8 7.5E+02 0.016 26.3 11.4 37 215-251 286-323 (427)
229 cd01977 Nitrogenase_VFe_alpha 24.8 3.8E+02 0.0081 28.5 9.0 34 216-250 285-320 (415)
230 PF10294 Methyltransf_16: Puta 24.8 75 0.0016 29.4 3.3 33 215-249 42-76 (173)
231 PRK12743 oxidoreductase; Provi 24.6 1.9E+02 0.0041 27.9 6.3 71 231-312 15-89 (256)
232 PRK15414 phosphomannomutase Cp 24.6 3.1E+02 0.0067 29.6 8.4 34 216-249 167-204 (456)
233 cd00758 MoCF_BD MoCF_BD: molyb 24.6 1.9E+02 0.0041 25.4 5.7 64 231-330 21-84 (133)
234 PRK07856 short chain dehydroge 24.4 2.3E+02 0.0051 27.0 6.9 76 217-312 4-84 (252)
235 PF05221 AdoHcyase: S-adenosyl 24.3 88 0.0019 31.4 3.8 37 214-250 38-75 (268)
236 TIGR00177 molyb_syn molybdenum 24.3 1.9E+02 0.0042 25.8 5.8 82 217-339 19-100 (144)
237 PRK10157 putative oxidoreducta 24.3 81 0.0018 33.6 3.9 31 221-251 7-37 (428)
238 PRK08091 ribulose-phosphate 3- 24.2 2.2E+02 0.0048 27.9 6.5 75 223-314 71-152 (228)
239 PRK13403 ketol-acid reductoiso 24.2 1.2E+02 0.0026 31.5 4.8 98 215-342 12-109 (335)
240 KOG1494|consensus 24.1 56 0.0012 33.1 2.3 50 280-334 76-125 (345)
241 TIGR01318 gltD_gamma_fam gluta 24.1 1.6E+02 0.0034 31.9 6.1 36 216-251 138-173 (467)
242 TIGR01284 alt_nitrog_alph nitr 23.9 3.5E+02 0.0077 29.2 8.7 34 216-250 322-357 (457)
243 TIGR02354 thiF_fam2 thiamine b 23.9 6.2E+02 0.014 23.9 13.5 117 216-342 18-147 (200)
244 PRK05993 short chain dehydroge 23.8 2.5E+02 0.0054 27.5 7.1 65 230-312 16-85 (277)
245 KOG3045|consensus 23.3 45 0.00097 33.5 1.5 15 326-340 207-221 (325)
246 PF13460 NAD_binding_10: NADH( 23.3 4E+02 0.0086 23.9 7.9 64 228-314 8-71 (183)
247 TIGR02023 BchP-ChlP geranylger 23.3 95 0.0021 32.4 4.1 31 221-251 2-32 (388)
248 COG0334 GdhA Glutamate dehydro 23.3 1E+02 0.0022 32.9 4.2 37 216-252 204-240 (411)
249 TIGR01286 nifK nitrogenase mol 23.2 2.9E+02 0.0062 30.5 7.9 88 216-316 360-450 (515)
250 PRK09072 short chain dehydroge 23.2 4E+02 0.0087 25.6 8.4 79 218-312 4-89 (263)
251 PRK06997 enoyl-(acyl carrier p 23.2 3.4E+02 0.0073 26.4 7.8 81 217-311 4-92 (260)
252 PRK07576 short chain dehydroge 23.2 3.6E+02 0.0077 26.1 8.0 84 215-311 5-94 (264)
253 PF00107 ADH_zinc_N: Zinc-bind 22.9 2.6E+02 0.0057 23.5 6.3 87 231-342 3-92 (130)
254 PRK07063 short chain dehydroge 22.8 4.2E+02 0.0091 25.3 8.4 84 217-312 5-95 (260)
255 PRK12409 D-amino acid dehydrog 22.7 1.3E+02 0.0028 31.5 5.0 30 221-250 3-32 (410)
256 PRK07370 enoyl-(acyl carrier p 22.7 4.5E+02 0.0098 25.4 8.6 85 217-312 4-96 (258)
257 PF00389 2-Hacid_dh: D-isomer 22.7 1.2E+02 0.0025 26.5 4.0 64 291-368 26-89 (133)
258 TIGR00495 crvDNA_42K 42K curve 22.6 19 0.00041 38.2 -1.4 19 24-42 261-279 (389)
259 COG4332 Uncharacterized protei 22.6 82 0.0018 29.6 3.0 27 116-142 142-168 (203)
260 PRK07806 short chain dehydroge 22.6 4.7E+02 0.01 24.7 8.6 85 217-312 4-93 (248)
261 PF13450 NAD_binding_8: NAD(P) 22.5 1E+02 0.0022 23.8 3.1 27 225-251 2-28 (68)
262 PRK08643 acetoin reductase; Va 22.5 2E+02 0.0044 27.5 6.0 70 231-312 15-88 (256)
263 cd00886 MogA_MoaB MogA_MoaB fa 22.5 2E+02 0.0044 25.9 5.6 20 231-250 22-41 (152)
264 PRK06603 enoyl-(acyl carrier p 22.3 2.7E+02 0.0058 27.1 6.9 84 216-312 5-95 (260)
265 TIGR00936 ahcY adenosylhomocys 22.2 97 0.0021 33.1 3.9 35 214-248 27-62 (406)
266 TIGR01316 gltA glutamate synth 22.2 1.3E+02 0.0029 32.2 5.1 36 215-250 129-164 (449)
267 PRK12827 short chain dehydroge 22.2 4E+02 0.0087 25.0 8.0 87 217-312 4-96 (249)
268 PRK07200 aspartate/ornithine c 22.2 3.5E+02 0.0075 28.8 8.0 104 217-337 185-328 (395)
269 PF10727 Rossmann-like: Rossma 22.2 1.7E+02 0.0037 25.8 4.9 94 219-341 10-106 (127)
270 PRK14322 glmM phosphoglucosami 22.1 1E+02 0.0022 32.9 4.2 34 217-250 163-197 (429)
271 PRK07364 2-octaprenyl-6-methox 22.0 87 0.0019 32.7 3.5 31 220-250 19-49 (415)
272 PRK07233 hypothetical protein; 21.9 91 0.002 32.6 3.7 31 221-251 1-31 (434)
273 PF02882 THF_DHG_CYH_C: Tetrah 21.9 3.4E+02 0.0074 25.0 7.0 77 215-341 32-110 (160)
274 PRK07588 hypothetical protein; 21.8 1.1E+02 0.0023 31.9 4.1 31 220-250 1-31 (391)
275 cd05800 PGM_like2 This PGM-lik 21.8 1.1E+02 0.0025 32.9 4.4 39 217-257 171-210 (461)
276 PRK07045 putative monooxygenas 21.8 1E+02 0.0023 31.9 4.1 31 220-250 6-36 (388)
277 PRK06484 short chain dehydroge 21.8 2.2E+02 0.0048 30.7 6.8 66 231-311 18-87 (520)
278 PRK08274 tricarballylate dehyd 21.5 99 0.0021 33.2 3.9 31 221-251 6-36 (466)
279 PRK07577 short chain dehydroge 21.5 3.9E+02 0.0084 25.0 7.7 59 231-312 16-77 (234)
280 PRK06505 enoyl-(acyl carrier p 21.5 4.3E+02 0.0093 25.9 8.2 83 217-312 5-94 (271)
281 PRK06953 short chain dehydroge 21.2 3.4E+02 0.0074 25.3 7.2 64 231-312 14-79 (222)
282 PLN00093 geranylgeranyl diphos 21.2 1.1E+02 0.0024 33.0 4.1 32 220-251 40-71 (450)
283 PF10281 Ish1: Putative stress 21.1 70 0.0015 21.8 1.7 31 37-67 1-32 (38)
284 cd08568 GDPD_TmGDE_like Glycer 21.0 3.2E+02 0.0069 26.1 7.0 52 280-338 91-146 (226)
285 PF01791 DeoC: DeoC/LacD famil 21.0 79 0.0017 30.7 2.8 20 232-251 149-168 (236)
286 cd01967 Nitrogenase_MoFe_alpha 21.0 4.9E+02 0.011 27.3 9.0 35 216-251 283-318 (406)
287 COG1109 {ManB} Phosphomannomut 21.0 93 0.002 33.7 3.5 36 215-250 174-210 (464)
288 PF01476 LysM: LysM domain; I 20.8 79 0.0017 21.6 2.0 19 315-333 12-30 (44)
289 PRK06753 hypothetical protein; 20.8 1.2E+02 0.0026 31.2 4.2 31 220-250 1-31 (373)
290 COG1985 RibD Pyrimidine reduct 20.7 80 0.0017 30.7 2.7 53 288-340 28-83 (218)
291 PRK08416 7-alpha-hydroxysteroi 20.7 2.1E+02 0.0046 27.6 5.8 81 216-311 5-95 (260)
292 PF03807 F420_oxidored: NADP o 20.7 1.8E+02 0.0038 23.4 4.5 41 297-340 55-95 (96)
293 PRK14031 glutamate dehydrogena 20.7 1.3E+02 0.0028 32.6 4.4 36 215-250 224-259 (444)
294 COG2518 Pcm Protein-L-isoaspar 20.7 1.3E+02 0.0028 29.1 4.0 33 216-250 70-102 (209)
295 PRK07825 short chain dehydroge 20.7 2.6E+02 0.0056 27.1 6.4 79 217-312 3-87 (273)
296 PTZ00362 hypothetical protein; 20.5 42 0.00091 36.0 0.7 21 389-412 269-289 (479)
297 TIGR03329 Phn_aa_oxid putative 20.4 1.5E+02 0.0032 31.9 5.0 36 215-250 17-57 (460)
298 PRK13656 trans-2-enoyl-CoA red 20.4 2.8E+02 0.0061 29.5 6.8 76 234-314 59-142 (398)
299 PRK12828 short chain dehydroge 20.4 6.9E+02 0.015 23.1 9.3 83 216-312 4-91 (239)
300 PRK10742 putative methyltransf 20.3 1.3E+02 0.0029 29.8 4.1 28 221-250 91-118 (250)
301 COG0569 TrkA K+ transport syst 20.3 2.5E+02 0.0053 27.2 6.0 73 221-312 2-75 (225)
302 PLN02657 3,8-divinyl protochlo 20.2 6.4E+02 0.014 26.4 9.6 85 215-312 56-145 (390)
303 PRK00094 gpsA NAD(P)H-dependen 20.2 7.6E+02 0.017 24.6 10.0 104 221-343 3-110 (325)
304 PF09692 Arb1: Argonaute siRNA 20.2 19 0.00041 38.2 -1.9 16 313-328 114-129 (396)
305 PRK12744 short chain dehydroge 20.2 5.5E+02 0.012 24.5 8.6 86 216-312 5-98 (257)
306 cd01965 Nitrogenase_MoFe_beta_ 20.2 8.5E+02 0.018 25.8 10.7 92 216-321 296-390 (428)
307 PRK10015 oxidoreductase; Provi 20.1 1.1E+02 0.0023 32.7 3.8 32 220-251 6-37 (429)
308 TIGR03325 BphB_TodD cis-2,3-di 20.1 2.9E+02 0.0062 26.6 6.6 80 217-311 3-87 (262)
No 1
>PRK11430 putative CoA-transferase; Provisional
Probab=100.00 E-value=4e-80 Score=643.30 Aligned_cols=284 Identities=36% Similarity=0.691 Sum_probs=270.3
Q ss_pred CCCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 214 SLPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 214 ~~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
.+||+||||||||+++|||+|+++||||||||||||+|..||++|.++|.. .+.+.+|..+|||||||+|||++++|
T Consensus 7 ~~pL~GirVldls~~~aGP~a~~~LAdlGAeVIKVE~p~~GD~~R~~~p~~---~~~s~~f~~~NrgKrsv~lDLk~~~G 83 (381)
T PRK11430 7 KGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYV---DGQSLYYSFINHGKESVVLDLKNDHD 83 (381)
T ss_pred CCCcCCCEEEEeCCcchHHHHHHHHHHcCCCEEEECCCCCCccccccCCCC---CCccHHHHHhCCCCeEEEecCCCHHH
Confidence 479999999999999999999999999999999999998899999997642 24688999999999999999999999
Q ss_pred HHHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEeecCCCCCCCCCCcchhHHhhhhccccccCCCCCC
Q psy16437 294 QQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGP 373 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~fG~~Gp~~~~~g~d~~~~A~sG~~~~~g~~~~~ 373 (501)
|++|++||++|||||+||||++|+||||||++|+++||+||||+|||||++|||++++|||.++||+||+++++|.++++
T Consensus 84 r~~~~~L~~~ADVvien~rpg~~~rlGl~y~~L~~~nP~LI~~sisgfG~~GP~~~~pg~D~~~qA~sG~~~~~G~~~~~ 163 (381)
T PRK11430 84 KSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEINPRLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYPDAP 163 (381)
T ss_pred HHHHHHHHhcCCEEEeCCCccHHHHcCCCHHHHHHHCCCceEEeeeeCCCCCCCCCCCCchHHHHHHhCHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCcchhhhHHHHHHHHHHHHHHHHHhhcCCceEEEcchhhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCeee
Q psy16437 374 PCKVGIASIDLATGLYAHGAVMAALLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLNAGIEGKRWGTSHANVVPHQVFK 453 (501)
Q Consensus 374 P~~~~~~~~D~~ag~~aa~a~laAL~~R~rtG~G~~vdvSl~e~~~~~~~~~~~~~~~~g~~~~r~g~~~~~~~p~~~y~ 453 (501)
|+..+.+++|+.+|+++++||||||++|++||+||+||+||+|++++++......|...|..+.+.||.++..+||++|+
T Consensus 164 P~~~~~~~~D~~~g~~aa~ailaAL~~R~~tG~Gq~VdvSl~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~p~~~y~ 243 (381)
T PRK11430 164 PVRVGTSLADLCGGVYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMAYIATGKSPQRLGNRHPYMAPFDVFD 243 (381)
T ss_pred CeeccchhhHHHHHHHHHHHHHHHHHHHhcCCCeeEEEeeHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999988887777777777777778899988889999999
Q ss_pred eCCCcEEEEeCChHHHHHHHHHcCCCCcccCCCCCCHHHHHhhhhcc
Q psy16437 454 TSNGYVTIGTGSDKQYQDMCKVMNLQHLALDPRYLTGALILAMTSHL 500 (501)
Q Consensus 454 ~aDGwv~i~~~~~~~w~~l~~~lg~~~l~~d~~~~~~~~R~~~~~~l 500 (501)
|+||||+|++.++++|.+||++||++||.+||+|++...|.+|+++|
T Consensus 244 ~~DG~i~i~~~~~~~w~~l~~~lg~~~l~~d~rf~~~~~r~~~~~~l 290 (381)
T PRK11430 244 TQDKPITICCGNDKLFSALCQALELTELVNDPRFSSNILRVQNQAIL 290 (381)
T ss_pred cCCCcEEEEeCCHHHHHHHHHHhCCcccccCcccCChHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999998876
No 2
>COG1804 CaiB Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]
Probab=100.00 E-value=1e-79 Score=634.19 Aligned_cols=284 Identities=49% Similarity=0.846 Sum_probs=271.6
Q ss_pred CCCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 214 SLPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 214 ~~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
.+||+|+|||||+++++||+||++||||||||||||+|..||.+|...+ .. .+ |.+|...||||+||+||||+++|
T Consensus 5 ~~pL~GirViel~~~~aGP~ag~~LaDlGAeVIKVE~P~~gD~~R~~~~-~~--~~-s~~f~~~nR~K~Sv~lDlk~~eg 80 (396)
T COG1804 5 KGPLEGLRVIDLAHVLAGPFAGQLLADLGAEVIKVERPGGGDDTRVFAP-VA--DG-SAYFLALNRGKRSVALDLKTEEG 80 (396)
T ss_pred CCCCCceeeeeecccccChHHHhHHHHcCCcEEEecCCCCCCchhcccc-cc--Cc-chHHHHhcCCceEEEeecCCHhH
Confidence 4799999999999999999999999999999999999998999998321 11 13 88999999999999999999999
Q ss_pred HHHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEeecCCCCCCCCCCcchhHHhhhhccccccCCCCCC
Q psy16437 294 QQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGP 373 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~fG~~Gp~~~~~g~d~~~~A~sG~~~~~g~~~~~ 373 (501)
|++|++|+++|||||||||||+|+|||||||+|+++||+||||+|||||++|||++++|||.++||++|+++.||.++++
T Consensus 81 re~~~~Lv~~ADVlienfrpG~l~rlGl~ye~L~~~NP~LIy~sisGfGq~GP~~~~~gyD~~~qa~~Gl~~~tG~~~~~ 160 (396)
T COG1804 81 REILLRLVAGADVLIENFRPGVLERLGLGYEALRAINPRLIYCSISGFGQTGPYADRPGYDLIAQAEAGLMSITGRPDGP 160 (396)
T ss_pred HHHHHHHHhhCceehcccchhHHHHhCCCHHHHHhhCCCeEEEEEeeCCCCCCCCCCCCccHHHHHhhCceeeccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCcchhhhHHHHHHHHHHHHHHHHHhhcCCceEEEcchhhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCeee
Q psy16437 374 PCKVGIASIDLATGLYAHGAVMAALLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLNAGIEGKRWGTSHANVVPHQVFK 453 (501)
Q Consensus 374 P~~~~~~~~D~~ag~~aa~a~laAL~~R~rtG~G~~vdvSl~e~~~~~~~~~~~~~~~~g~~~~r~g~~~~~~~p~~~y~ 453 (501)
|++++.+++|+.+|++++++||+||++|++||+||+||+||+|+++.++.+....|...|..+.+.|+.|+..+||++|+
T Consensus 161 P~~~g~~i~D~~~Gl~~~~~iLaAL~~r~~tG~Gq~Id~am~d~~~~~~~~~~~~~~~~G~~p~~~g~~~~~~~py~~y~ 240 (396)
T COG1804 161 PVPAGVAIADLAGGLYAAIGILAALLHRERTGRGQHIDVAMLDAAVSLLANQLMTYLATGKLPLRPGGAHPAIAPYDVYR 240 (396)
T ss_pred CcccCcchhhHHHHHHHHHHHHHHHHHhccCCCCcEEEEeHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCcCceE
Confidence 99999999999999999999999999999999999999999999999999999999999988888899999999999999
Q ss_pred eCCCc-EEEEeCChHHHHHHHHHcCCCCcccCCCCCCHHHHHhhhhccC
Q psy16437 454 TSNGY-VTIGTGSDKQYQDMCKVMNLQHLALDPRYLTGALILAMTSHLI 501 (501)
Q Consensus 454 ~aDGw-v~i~~~~~~~w~~l~~~lg~~~l~~d~~~~~~~~R~~~~~~l~ 501 (501)
|+||| |+|++.++++|++||+++|++||..||+|+++..|.+|+++|+
T Consensus 241 ~aDG~~~~i~~~~d~~~~~lc~~lg~peL~~d~rfa~n~~R~~~r~~l~ 289 (396)
T COG1804 241 TADGKLVALGAGNDKFWQALCELLGRPELADDPRFATNHARVANRDELD 289 (396)
T ss_pred CCCCCEEEEEeCChHHHHHHHHhcCCcccccCccccccccchhhHHHHH
Confidence 99995 9999999999999999999999999999999999999998873
No 3
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=100.00 E-value=1.9e-76 Score=622.98 Aligned_cols=284 Identities=35% Similarity=0.562 Sum_probs=259.6
Q ss_pred CCCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 214 SLPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 214 ~~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
.+||+||||||||+++|||+|+++||||||||||||+|..||++|.++++.. .+.+.+|..+|||||||+|||++|+|
T Consensus 2 ~~pL~GirVldls~~~aGP~a~~lLAdlGA~VIKVE~p~~GD~~R~~~~~~~--~~~s~~f~~~NrgKrsi~lDLk~~eG 79 (416)
T PRK05398 2 TKPLEGIKVLDFTHVQSGPSCTQLLAWFGADVIKVERPGVGDVTRNQLRDIP--DVDSLYFTMLNSNKRSITLDTKTPEG 79 (416)
T ss_pred CCCCCCCEEEEeccHHHHHHHHHHHHHcCCCEEEecCCCCCCcccccCCCCC--CcccHHHHHcCCCCeEEEeeCCCHHH
Confidence 4699999999999999999999999999999999999977999999865332 23588999999999999999999999
Q ss_pred HHHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEeecCCCCCCCCCCcchhHHhhhhccccccCCCCCC
Q psy16437 294 QQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGP 373 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~fG~~Gp~~~~~g~d~~~~A~sG~~~~~g~~~~~ 373 (501)
|++|++||++|||||+||||++|+||||||++|+++||+||||+|||||++|||++++|||.++||+||+++++|.++++
T Consensus 80 r~~l~~Lv~~ADVvien~rpg~~~rlGl~~e~L~~~nP~LI~~sisg~G~~GP~~~~pg~D~~~qA~sG~~~~~G~~~~~ 159 (416)
T PRK05398 80 KEVLEKLIREADVLVENFGPGALDRMGFTWERIQEINPRLIVASIKGFGPGSPYEDVKAYENVAQCAGGAASTTGFWDGP 159 (416)
T ss_pred HHHHHHHHhcCCEEEECCCcchHHHcCCCHHHHHhhCcCEEEEEEeeCCCCCCCCCCCchHHHHHHhhchHhhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCcchhhhHHHHHHHHHHHHHHHHHhhcCCceEEEcchhhhHHHHHHHHHH------------HHHh-----cCCCC
Q psy16437 374 PCKVGIASIDLATGLYAHGAVMAALLHKYKTGKGQKIDCNLLSTQVSMLINVGA------------NYLN-----AGIEG 436 (501)
Q Consensus 374 P~~~~~~~~D~~ag~~aa~a~laAL~~R~rtG~G~~vdvSl~e~~~~~~~~~~~------------~~~~-----~g~~~ 436 (501)
|+.++.+++|+.+|+++++|||+||++|++||+||+|||||+|++++++..... .|.. .+...
T Consensus 160 P~~~~~~~~D~~~g~~aa~ailaAL~~R~rtG~Gq~VdvSl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 239 (416)
T PRK05398 160 PTVSGAALGDSNTGMHLAIGILAALLQREKTGRGQRVTVSMQDAVLNLCRVKLRDQQRLDHLGYLEEYPQYPNGTFGDAV 239 (416)
T ss_pred CccCCcchhHHHHHHHHHHHHHHHHHHhhccCCCcEEEeeHHHHHHHHHHhhhhhhcccccchhhhhhhhcccccCCCCC
Confidence 999999999999999999999999999999999999999999998876543222 2221 24445
Q ss_pred CCCCCCCCCCCCCCeeeeC---C---CcEEEEeCChHHHHHHHHHcCCCCcccCCCCCCHHHHHhhhhcc
Q psy16437 437 KRWGTSHANVVPHQVFKTS---N---GYVTIGTGSDKQYQDMCKVMNLQHLALDPRYLTGALILAMTSHL 500 (501)
Q Consensus 437 ~r~g~~~~~~~p~~~y~~a---D---Gwv~i~~~~~~~w~~l~~~lg~~~l~~d~~~~~~~~R~~~~~~l 500 (501)
.+.++.++..+|+++|+|+ | |||+|++ ++++|.+||++||+++|++||+|++...|.+|+++|
T Consensus 240 ~~~g~~~~~~~p~~~y~~~~~~dg~~g~v~i~~-~~~~w~~l~~~lg~~~l~~d~rf~~~~~r~~~~~~l 308 (416)
T PRK05398 240 PRAGNASGGGQPGWILKCKGWETDPNAYIYFII-QPQGWEPICKAIGKPEWITDPAYATPEARQPHLFDI 308 (416)
T ss_pred CCCCCCCCCCCCCcceeeccccCCCCCEEEEEc-CHHHHHHHHHHhCChhhccCccCCCHHHHHHHHHHH
Confidence 6778888888899999999 5 3999998 779999999999999999999999999999998876
No 4
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=100.00 E-value=4e-76 Score=618.22 Aligned_cols=276 Identities=26% Similarity=0.359 Sum_probs=254.3
Q ss_pred CCCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 214 SLPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 214 ~~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
.+||+||||||||+++|||+||++||||||||||||+|..||++|..+ .+|..+|||||||+||||+|+|
T Consensus 9 ~~pL~GirVldls~~~aGP~a~~lLAdlGAeVIKVE~p~~GD~~R~~~----------~~~~~~NrgKrsi~LDLk~~~G 78 (405)
T PRK03525 9 FGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQP----------NYPQLSRRNLHALSLNIFKDEG 78 (405)
T ss_pred CCCCCCCEEEEecchhHHHHHHHHHHHcCCcEEEECCCCCCCcccccc----------chhhhccCCCeeEEEeCCCHHH
Confidence 369999999999999999999999999999999999998899999763 3588899999999999999999
Q ss_pred HHHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEeecCCCCC--CCCCCcchhHHhhhhccccccCCCC
Q psy16437 294 QQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFGSKGP--YKDRPGYDIIAASIGGLLHITGHPD 371 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~fG~~Gp--~~~~~g~d~~~~A~sG~~~~~g~~~ 371 (501)
|++|++||++|||||+||||++|+||||||++|+++||+||||++||||++|| |++++|||.++||+||+++++|.++
T Consensus 79 r~~l~~Li~~ADVvien~rpg~~~rlGl~~e~L~~~nP~LIy~sisgfG~~GP~p~~~~pg~D~~~qA~sG~~~~~G~~~ 158 (405)
T PRK03525 79 REAFLKLMETTDIFIEASKGPAFARRGITDEVLWEHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVD 158 (405)
T ss_pred HHHHHHHHHhCCEEEECCCccHHHHcCCCHHHHHHhCCCeEEEEeeECCCCCCccccCCCChhHHHHHHhChHhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999995 8999999999999999999999885
Q ss_pred CCCcccCcchhhhHHHHHHHHHHHHHHHHHhhcCCceEEEcchhhhHHHHHHHHHHHHHhcCCCCCC-CCCCCCCCCCCC
Q psy16437 372 GPPCKVGIASIDLATGLYAHGAVMAALLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLNAGIEGKR-WGTSHANVVPHQ 450 (501)
Q Consensus 372 ~~P~~~~~~~~D~~ag~~aa~a~laAL~~R~rtG~G~~vdvSl~e~~~~~~~~~~~~~~~~g~~~~r-~g~~~~~~~p~~ 450 (501)
.|...+.+++|+.+|+++++|||+||++|++||+||+||+||+|++++++......|...|....+ .|+.++..+||+
T Consensus 159 -~P~~~~~~~~D~~~g~~aa~~ilaAL~~R~~tG~Gq~VdvSm~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~p~~ 237 (405)
T PRK03525 159 -QPMPAFPYTADYFSGLTATTAALAALHKARETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMTKGKDPYYAGCG 237 (405)
T ss_pred -CCCCCCccHhHHHHHHHHHHHHHHHHHHhhcCCCccEEEeeHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Confidence 577778889999999999999999999999999999999999999998887777777766655444 677777788999
Q ss_pred eeeeCCCcEEEEeCChHHHHHHHHHcCCCCcccCCCCCCHHH---H--Hhhhhcc
Q psy16437 451 VFKTSNGYVTIGTGSDKQYQDMCKVMNLQHLALDPRYLTGAL---I--LAMTSHL 500 (501)
Q Consensus 451 ~y~~aDGwv~i~~~~~~~w~~l~~~lg~~~l~~d~~~~~~~~---R--~~~~~~l 500 (501)
+|+|+||||+|++.++++|.+||++||+++|++||+|.+... | .+|+++|
T Consensus 238 ~y~~~DG~i~i~~~~~~~w~~l~~~lg~~~l~~d~~f~~~~~~~~r~~~~~~~el 292 (405)
T PRK03525 238 LYKCADGYIVMELVGITQIKECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLV 292 (405)
T ss_pred ceEcCCCcEEEEECCHHHHHHHHHHhCCcccccCccccCccccchhhhhhhHHHH
Confidence 999999999999999999999999999999999999988643 5 4666665
No 5
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=100.00 E-value=5.9e-76 Score=619.49 Aligned_cols=283 Identities=34% Similarity=0.555 Sum_probs=258.6
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.||+||||||||+++|||+|+++||||||||||||+|..||++|.++++.. ...+.+|..+|||||||+|||++|+|+
T Consensus 2 ~pL~GirVldls~~~aGP~a~~lLAdlGAeVIKVE~p~~GD~~R~~~~~~~--~~~s~~f~~~nr~Krsi~lDLk~~~g~ 79 (415)
T TIGR03253 2 KPLDGIKVLDFTHVQSGPSCTQMLAWLGADVIKIERPGVGDITRGQLRDIP--DVDSLYFTMLNCNKRSITLNTKTPEGK 79 (415)
T ss_pred CCCCCCEEEEeCcHHHHHHHHHHHHHcCCcEEEeCCCCCCccccccCCCCC--CcccHHHHHhCCCCeEEEeeCCCHHHH
Confidence 589999999999999999999999999999999999977999999875332 125789999999999999999999999
Q ss_pred HHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEeecCCCCCCCCCCcchhHHhhhhccccccCCCCCCC
Q psy16437 295 QIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPP 374 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~fG~~Gp~~~~~g~d~~~~A~sG~~~~~g~~~~~P 374 (501)
++|++||++|||||+||||++|+||||||++|+++||+||||++||||++|||++++|||.++||+||+++++|.++++|
T Consensus 80 ~~l~~Lv~~ADVvien~rpg~~~rlGL~~~~L~~~nP~LV~~sisgfG~~GP~~~~pg~D~~~qA~sG~~~~~G~~~~~P 159 (415)
T TIGR03253 80 EVLEELIKKADVMVENFGPGALDRMGFTWEYIQEINPRLILASIKGFGEGSPYENVKAYENVAQAAGGAASTTGFWDGPP 159 (415)
T ss_pred HHHHHHHhhCCEEEECCCCChHHHcCCCHHHHHHhCCCeEEEEeeecCCCCCCCCCCcHHHHHHHHhchhhhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchhhhHHHHHHHHHHHHHHHHHhhcCCceEEEcchhhhHHHHHHHHHH------------HHH-----hcCCCCC
Q psy16437 375 CKVGIASIDLATGLYAHGAVMAALLHKYKTGKGQKIDCNLLSTQVSMLINVGA------------NYL-----NAGIEGK 437 (501)
Q Consensus 375 ~~~~~~~~D~~ag~~aa~a~laAL~~R~rtG~G~~vdvSl~e~~~~~~~~~~~------------~~~-----~~g~~~~ 437 (501)
+.++.+++|+.+|+++++|||+||++|++||+||+|||||+|++++++..... .|. ..|....
T Consensus 160 ~~~~~~~~D~~~g~~aa~~ilaAL~~R~~tG~Gq~VdvSl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 239 (415)
T TIGR03253 160 LVSGAALGDSNTGMHLMIGILAALYQREHTGRGQRVTVAMQDAVLNLCRVKLRDQQRLDRLGPLAEYPQYPNGAFGDAVP 239 (415)
T ss_pred ccCCccHhHHHHHHHHHHHHHHHHHHhhccCCCcEEEECcHHHHHHHHHHHHhhhhcccccccchhhhccccccCCCCCC
Confidence 99999999999999999999999999999999999999999998876544321 121 1244455
Q ss_pred CCCCCCCCCCCCCeeeeC------CCcEEEEeCChHHHHHHHHHcCCCCcccCCCCCCHHHHHhhhhcc
Q psy16437 438 RWGTSHANVVPHQVFKTS------NGYVTIGTGSDKQYQDMCKVMNLQHLALDPRYLTGALILAMTSHL 500 (501)
Q Consensus 438 r~g~~~~~~~p~~~y~~a------DGwv~i~~~~~~~w~~l~~~lg~~~l~~d~~~~~~~~R~~~~~~l 500 (501)
+.++.++..+|+++|+|+ ||||+|++.++ +|++||++||+++|.+||+|.+...|.+|+++|
T Consensus 240 ~~g~~~~~~~p~~~y~~~~~~~~~Dg~v~i~~~~~-~w~~l~~~lg~~~l~~d~rf~~~~~r~~~~~~l 307 (415)
T TIGR03253 240 RGGNAGGGGQPGWILKCKGWETDPNAYVYFTIQAN-NWEQICDMIGKPEWITDPAYATPEARQPKLNDI 307 (415)
T ss_pred CCCCCCCCCCCCccccccccCcCCCCeEEEEEChH-HHHHHHHHhCChhhccCcCCCChHHHHHhHHHH
Confidence 677777778899999999 99999998755 899999999999999999999999999998876
No 6
>KOG3957|consensus
Probab=100.00 E-value=1.4e-58 Score=450.27 Aligned_cols=267 Identities=40% Similarity=0.717 Sum_probs=242.0
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.||+|||||||+..++|||||+.||||||||||||.|+.. .-..+||||++..|||+.|+|.
T Consensus 3 ~pL~GIkVlelsglapgPfC~MvLaDfGA~V~~Vdr~~~~------------------~~~~l~rgk~~~~ldlk~p~~~ 64 (387)
T KOG3957|consen 3 MPLSGIKVLELSGLAPGPFCGMVLADFGAEVTKVDRKNSN------------------DEDRLNRGKRMLVLDLKNPEGT 64 (387)
T ss_pred cccCCcEEEEeccccCCchhhhhhhhcCceEEEecCCCCC------------------hHHHhcCCCCceeeeccCchhh
Confidence 5899999999999999999999999999999999998621 1246899999999999999999
Q ss_pred HHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEeecCCCCCCCCCCcchhHHhhhhccccccCCCCCCC
Q psy16437 295 QIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPP 374 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~fG~~Gp~~~~~g~d~~~~A~sG~~~~~g~~~~~P 374 (501)
..+++|+..+||+|++|+||+||++||||++|...||+||||+|||||++||++.++|||.++-|.||+++.+|..+++|
T Consensus 65 ~~l~~l~~~sdvllep~rpGtlEk~~lgp~~l~~~n~~LIyc~itGyGQtG~~sqraGhDiny~AlSGll~~~G~~~~~P 144 (387)
T KOG3957|consen 65 QALRRLCKKSDVLLEPYRPGTLEKMGLGPEQLWKVNPKLIYCSITGYGQTGRMSQRAGHDINYSALSGLLHITGRRAGRP 144 (387)
T ss_pred HHHHHHHhccceeccCCCCchHhhcCCCHHHHhccCCcEEEEEEecccccCchhhhcCcchhhhhhhcceeeecccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchhhhHHH-HHHHHHHHHHHHHHhhcCCceEEEcchhhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCeee
Q psy16437 375 CKVGIASIDLATG-LYAHGAVMAALLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLNAGIEGKRWGTSHANVVPHQVFK 453 (501)
Q Consensus 375 ~~~~~~~~D~~ag-~~aa~a~laAL~~R~rtG~G~~vdvSl~e~~~~~~~~~~~~~~~~g~~~~r~g~~~~~~~p~~~y~ 453 (501)
..+...++|+.+| ++||.||++|||+|-|||+||.||+||+|++..++......|....-+..|++..+....||..|+
T Consensus 145 ~~P~n~laDfAgGgL~aa~gI~~AL~~RtrtgkGqviD~~m~eg~ayl~S~v~~~y~~s~~ea~R~~~~~G~~~~Y~tyk 224 (387)
T KOG3957|consen 145 WAPGNALADFAGGGLYAAGGILAALYQRTRTGKGQVIDCNMLEGVAYLLSFVQKNYLQSLWEADRYGTAHGSIPPYQTYK 224 (387)
T ss_pred CCchhhhhhhccchhHHHHHHHHHHHHHhccCCceEEEechhHhHHHHHHHHHHHhhhhhccccccccccCCCccceeee
Confidence 9999999999987 999999999999999999999999999999998888888888887778888999999999999999
Q ss_pred eCCCc-EEEEeCChHHHHHHHHHcCCCCcccCCCCCCHHHHHhhhhcc
Q psy16437 454 TSNGY-VTIGTGSDKQYQDMCKVMNLQHLALDPRYLTGALILAMTSHL 500 (501)
Q Consensus 454 ~aDGw-v~i~~~~~~~w~~l~~~lg~~~l~~d~~~~~~~~R~~~~~~l 500 (501)
|+||+ +++++.++ ||-.+|.-+-..++.++|.|-++.+|+.|+-|+
T Consensus 225 TkDG~fmavga~ep-QF~~~l~~ll~~~~d~~p~~~tn~~rvtnr~E~ 271 (387)
T KOG3957|consen 225 TKDGYFMAVGALEP-QFYELLKKLLGLKLDENPKQFTNPDRVTNRVEL 271 (387)
T ss_pred ccCceEEEeccccH-HHHHHHHHhhCcccccchhhccCcccccchHHH
Confidence 99995 55656555 555555544445567789999999988777654
No 7
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=100.00 E-value=1.3e-52 Score=398.45 Aligned_cols=189 Identities=43% Similarity=0.842 Sum_probs=167.5
Q ss_pred EEEeCCChhhHHHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEeecCCCCCCCCCCcchhHHhhhhcc
Q psy16437 284 VCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFGSKGPYKDRPGYDIIAASIGGL 363 (501)
Q Consensus 284 v~lDl~~~~g~~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~fG~~Gp~~~~~g~d~~~~A~sG~ 363 (501)
|+|||++|+||++|++||++|||||+||||++|++|||||++|+++||+||||+|||||++|||++++|||+++||+||+
T Consensus 1 V~lDl~~~~gr~~l~~L~~~ADV~i~n~rpg~~~~lGl~~~~l~~~nP~LV~~~isgfG~~Gp~~~~~~~d~~~qA~sG~ 80 (191)
T PF02515_consen 1 VALDLKSPEGRAALRRLLATADVVIENFRPGVLERLGLDYEALRAINPRLVYCSISGFGQDGPYADRPGYDLVAQAASGL 80 (191)
T ss_dssp EEEETTSHHHHHHHHHHHHT-SEEEEESSTTHHHHTT-SHHHHHHH-TT-EEEEEESS-SSSTTTTS---HHHHHHHTTT
T ss_pred CEeeCcCHHHHHHHHHHHHhCCEEEECCchhhhHhcCCCHHHHHhhCCCCeEEEEEeecCCCccccCCCCCcccccceee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCC-CCcccCcchhhhHHHHHHHHHHHHHHHHHhhcCCceEEEcchhhhHHHHHHHHHHHHHhcCCCCCCCCCC
Q psy16437 364 LHITGHPDG-PPCKVGIASIDLATGLYAHGAVMAALLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLNAGIEGKRWGTS 442 (501)
Q Consensus 364 ~~~~g~~~~-~P~~~~~~~~D~~ag~~aa~a~laAL~~R~rtG~G~~vdvSl~e~~~~~~~~~~~~~~~~g~~~~r~g~~ 442 (501)
++++|.+++ +|+.++.+++|+.+|++++++||+||++|++||+||+||+||+|++++++......+...+....+.|+.
T Consensus 81 ~~~~g~~~~~~P~~~~~~~~D~~~g~~aa~~ilaAL~~R~rtG~G~~vdvSl~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (191)
T PF02515_consen 81 MSLTGEPDGGPPVRPGTPLADYAAGLYAAIGILAALLRRERTGRGQRVDVSLLEAALALLSYPLADYLNGGRVPPRSGNR 160 (191)
T ss_dssp GGGSS-TTSSEE---SSCTTHHHHHHHHHHHHHHHHHHHHHHSS-EEEEEEHHHHHHHHTHHHHHHHHCTSSSSTTBSTT
T ss_pred eecccCCccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCeeEEEECHHHHHHHHhhHHHHHHHccCCCCCCCCCC
Confidence 999987776 8999999999999999999999999999999999999999999999999888888888878788888999
Q ss_pred CCCCCCCCeeeeCCC-cEEEEeCChHHHHHH
Q psy16437 443 HANVVPHQVFKTSNG-YVTIGTGSDKQYQDM 472 (501)
Q Consensus 443 ~~~~~p~~~y~~aDG-wv~i~~~~~~~w~~l 472 (501)
++...||++|+|+|| ||+|++.+++||++|
T Consensus 161 ~~~~~~~~~y~~~DG~~v~i~~~~~~~w~~l 191 (191)
T PF02515_consen 161 DPSSAPYGVYRCADGRWVAIAALTDRQWRRL 191 (191)
T ss_dssp CSSSTTEEEEEETTC-EEEEE--SHHHHHHH
T ss_pred CCCCCCCCeEECCCCCEEEEEcCCHHHHhCc
Confidence 888999999999999 999999999999987
No 8
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=99.93 E-value=2.7e-26 Score=242.36 Aligned_cols=137 Identities=28% Similarity=0.417 Sum_probs=131.3
Q ss_pred CccccCCccccCCCCCCChHHhHhhHHHHHHHHHHHHhcCCHHHHHHHhhcCCCeEEeeCChhHhhhChhhhhcCcEEEe
Q psy16437 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVNSISQVFADEHIQDIKLVKEI 80 (501)
Q Consensus 1 lc~~lG~pel~~Dprf~t~~~R~~~~~eL~~~i~~~f~~~t~~ew~~~l~~~~VP~apV~t~~Evl~dpq~~arg~~~~v 80 (501)
||++||+|||.+||+|.++..|.+|++++.++|++||+++|++||+++|++++|||+||++++|+++|||+++|++|+++
T Consensus 279 l~~~lg~~~l~~d~rf~~~~~r~~~~~~l~~~l~~~~~~~t~~ew~~~l~~~~vp~~pV~~~~e~~~dpq~~~r~~~~~~ 358 (415)
T TIGR03253 279 ICDMIGKPEWITDPAYATPEARQPKLNDIFAFIETYTATKDKFEVTEWLNQYGIPCGPVLSMKEIAEDPSLRAVGTVVEV 358 (415)
T ss_pred HHHHhCChhhccCcCCCChHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHcCcCeEecCCHHHHhhCHHHHhcCCEEEe
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCceeEecccccccCCCCCCCCCCCCCCCChHHHHHhhcCCChHHHHHHhhhchh
Q psy16437 81 SHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLKDLLNYDETTIAKLKEKKIL 139 (501)
Q Consensus 81 ~~p~~g~~~~~~~p~~fs~~~~~~~~~aP~lGeht~eVL~ellG~s~~ei~~L~~~Gvv 139 (501)
+||..|.+.++++|++|+.++.... ++|.+||||++||++ +||++++|++|+++|+|
T Consensus 359 ~~p~~g~~~~~~~P~~~s~~~~~~~-~aP~lGeht~~vL~~-lg~~~~eI~~L~~~g~i 415 (415)
T TIGR03253 359 DQPIRGKYLTVGAPFKLSDFPPDIK-RAPLLGEHTDEVLKE-LGYDDDEIAELKASGVI 415 (415)
T ss_pred eCCCCCeeeeecCCeeeCCCCCCCC-CCCCCCCCHHHHHHH-cCCCHHHHHHHHHCCCC
Confidence 9998888999999999999887664 789999999999999 79999999999999875
No 9
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=99.93 E-value=2.7e-26 Score=242.31 Aligned_cols=137 Identities=31% Similarity=0.447 Sum_probs=131.6
Q ss_pred CccccCCccccCCCCCCChHHhHhhHHHHHHHHHHHHhcCCHHHHHHHhhcCCCeEEeeCChhHhhhChhhhhcCcEEEe
Q psy16437 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVNSISQVFADEHIQDIKLVKEI 80 (501)
Q Consensus 1 lc~~lG~pel~~Dprf~t~~~R~~~~~eL~~~i~~~f~~~t~~ew~~~l~~~~VP~apV~t~~Evl~dpq~~arg~~~~v 80 (501)
||++||+|||.+||+|.++..|.+|+++|.++|++||+++|++||+++|+++||||+||++++|+++|||+++|++|+++
T Consensus 280 l~~~lg~~~l~~d~rf~~~~~r~~~~~~l~~~l~~~~~~~t~~e~~~~l~~~~vp~~~V~~~~e~~~dpq~~~rg~~~~~ 359 (416)
T PRK05398 280 ICKAIGKPEWITDPAYATPEARQPHLFDIFAEIEKWTMTKTKFEAVDILNAFDIPCGPVLSMKEIAEDPSLRASGTIVEV 359 (416)
T ss_pred HHHHhCChhhccCccCCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCcCeeecCCHHHHhhCHHHHhcCCEEEe
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCceeEecccccccCCCCCCCCCCCCCCCChHHHHHhhcCCChHHHHHHhhhchh
Q psy16437 81 SHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLKDLLNYDETTIAKLKEKKIL 139 (501)
Q Consensus 81 ~~p~~g~~~~~~~p~~fs~~~~~~~~~aP~lGeht~eVL~ellG~s~~ei~~L~~~Gvv 139 (501)
+||..|.++++++|++|+.++... .++|.+||||++||++ +||++++|++|+++|+|
T Consensus 360 ~~p~~g~~~~~~~p~~~s~~~~~~-~~aP~lGeht~~vL~e-lG~~~~ei~~L~~~gvi 416 (416)
T PRK05398 360 DHPLRGKYLTVGSPIKLSDSPPDV-KRSPLLGEHTDEVLAE-LGYSDDQIAALKQNGAI 416 (416)
T ss_pred cCCCCCceeeecCCeeeCCCCCCC-CCCCCCCCCHHHHHHH-cCCCHHHHHHHHHCCCC
Confidence 999888999999999999988776 4789999999999999 79999999999999986
No 10
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=99.92 E-value=2.5e-25 Score=234.01 Aligned_cols=140 Identities=19% Similarity=0.197 Sum_probs=131.4
Q ss_pred CccccCCccccCCCCCCChHH---h--HhhHHHHHHHHHHHHhcCCHHHHHHHhhcCCCeEEeeCChhHhhhChhhhhcC
Q psy16437 1 MCKVMNLQHLALDPRYLTGAL---R--VENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVNSISQVFADEHIQDIK 75 (501)
Q Consensus 1 lc~~lG~pel~~Dprf~t~~~---R--~~~~~eL~~~i~~~f~~~t~~ew~~~l~~~~VP~apV~t~~Evl~dpq~~arg 75 (501)
||++||++||..||+|.++.. | .+|+++|.++|++||+++|.+||+++|++++|||+||++++|+++|||+++|+
T Consensus 259 l~~~lg~~~l~~d~~f~~~~~~~~r~~~~~~~el~~~l~~~~~~~t~~ew~~~l~~~~vp~~pV~~~~e~~~dp~~~~r~ 338 (405)
T PRK03525 259 CFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVEARFAELNIACAKVLTIPELESNPQYVARE 338 (405)
T ss_pred HHHHhCCcccccCccccCccccchhhhhhhHHHHHHHHHHHHHhCCHHHHHHHHHHcCCCEEecCCHHHHhhCHHHHHhC
Confidence 699999999999999998754 5 58999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeecCCCCceeEecccccccCCCCCCCCCCCCCCCChHHHHHhhcCCChHHHHHHhhhchhhh
Q psy16437 76 LVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLKDLLNYDETTIAKLKEKKILGL 141 (501)
Q Consensus 76 ~~~~v~~p~~g~~~~~~~p~~fs~~~~~~~~~aP~lGeht~eVL~ellG~s~~ei~~L~~~Gvv~~ 141 (501)
+|++++||.++.+.++++|++|++++...+.++|.+||||++||++ +||++++|++|+++|+|..
T Consensus 339 ~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~aP~lGeht~~vL~~-lG~~~~ei~~L~~~gvi~~ 403 (405)
T PRK03525 339 SITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKN-IGYSEEDIQELVAKGLAKV 403 (405)
T ss_pred CEEEEecCCCCeeEeecCCcccCCCCCCCCCCCCCCCCCHHHHHHH-cCCCHHHHHHHHHCcCEeC
Confidence 9999999986688899999999999887778899999999999999 7999999999999999863
No 11
>COG1804 CaiB Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]
Probab=99.92 E-value=3.2e-25 Score=229.57 Aligned_cols=137 Identities=34% Similarity=0.531 Sum_probs=132.8
Q ss_pred CccccCCccccCCCCCCChHHhHhhHHHHHHHHHHHHhcCCHHHHHHHhhcCCCeEEeeCChhHhhhChhhhhcCcEEEe
Q psy16437 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVNSISQVFADEHIQDIKLVKEI 80 (501)
Q Consensus 1 lc~~lG~pel~~Dprf~t~~~R~~~~~eL~~~i~~~f~~~t~~ew~~~l~~~~VP~apV~t~~Evl~dpq~~arg~~~~v 80 (501)
||+++|+|||..||+|+++..|.+|+++|.++|+++|+++|.+||+++|+++||||+||++++|+++|||+++|++++++
T Consensus 260 lc~~lg~peL~~d~rfa~n~~R~~~r~~l~~~i~~~~~~~t~~e~~~~l~~~~vp~~~v~~~~e~~~~p~~~ar~~~~~~ 339 (396)
T COG1804 260 LCELLGRPELADDPRFATNHARVANRDELDAILAAAFATNTAAEWAARLEAAGVPAAPVLTVAEALADPQLQARGLVVEV 339 (396)
T ss_pred HHHhcCCcccccCccccccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHhcCCCccccCCHHHHhhChhHHhhCcEEec
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCceeEecccccccCCCCCCCCCCCCCCCChHHHHHhhcCCChHHHHHHhhhchh
Q psy16437 81 SHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLKDLLNYDETTIAKLKEKKIL 139 (501)
Q Consensus 81 ~~p~~g~~~~~~~p~~fs~~~~~~~~~aP~lGeht~eVL~ellG~s~~ei~~L~~~Gvv 139 (501)
++| ++.+.++++|++|++++....+++|.+|+||++||++ +|||.++|++|+++|+|
T Consensus 340 ~~~-~~~v~~~~~p~r~s~~~~~~~~~~P~lG~~t~~vl~e-lg~s~~~i~~L~~~g~i 396 (396)
T COG1804 340 EGP-GGTVPQPAPPPRFSGAPAGVMRPPPALGEHTEAILAE-LGYSEREIAALKATGAI 396 (396)
T ss_pred cCC-CcccccccCCccccCCCCCcCCCCCCCCccHHHHHHH-cCCCHHHHHHHHhcCCC
Confidence 999 7889999999999999999999999999999999999 58999999999998875
No 12
>PRK11430 putative CoA-transferase; Provisional
Probab=99.86 E-value=1.5e-21 Score=203.92 Aligned_cols=117 Identities=25% Similarity=0.429 Sum_probs=109.8
Q ss_pred CccccCCccccCCCCCCChHHhHhhHHHHHHHHHHHHhcCCHHHHHHHhhcCCCeEEeeCChhHhhhChhhhhcCcEEEe
Q psy16437 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVNSISQVFADEHIQDIKLVKEI 80 (501)
Q Consensus 1 lc~~lG~pel~~Dprf~t~~~R~~~~~eL~~~i~~~f~~~t~~ew~~~l~~~~VP~apV~t~~Evl~dpq~~arg~~~~v 80 (501)
||++||+|||.+||+|.++..|.+|+++|.++|++||+++|++||+++|++++||++||++++|+++|||+++||+|+++
T Consensus 262 l~~~lg~~~l~~d~rf~~~~~r~~~~~~l~~~l~~~~~~~t~~e~~~~l~~~~vp~~pV~~~~e~~~dpq~~~rg~~~~~ 341 (381)
T PRK11430 262 LCQALELTELVNDPRFSSNILRVQNQAILKQYIERTLKTQAAEVWLARIHEVGVPVAPLLSVAEAINLPQTQARNMLIEA 341 (381)
T ss_pred HHHHhCCcccccCcccCChHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHcCcceEECCCHHHHHHCHHHHHhCCEEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ecCCCCceeEecccccccCCCC-CCCCCCCCCCCChHHHHHhh
Q psy16437 81 SHEKYGDIKIVGPAVAYSLTQP-EVRTPPPALGEHTDYVLKDL 122 (501)
Q Consensus 81 ~~p~~g~~~~~~~p~~fs~~~~-~~~~~aP~lGeht~eVL~el 122 (501)
|.++++++|++|++.+. ..+.++|.+||||++||+++
T Consensus 342 -----g~~~~~~~p~~~~~~~~~~~~~~aP~lGeht~evL~~~ 379 (381)
T PRK11430 342 -----GGIMMPGNPIKISGCADPHVMPGAATLDQHGEQIRQEF 379 (381)
T ss_pred -----CCEEEecCCeeeCCCCCCCCCCCCCCCCcCHHHHHHhh
Confidence 57889999999998875 45667999999999999873
No 13
>KOG3957|consensus
Probab=99.74 E-value=3.4e-18 Score=168.03 Aligned_cols=135 Identities=33% Similarity=0.459 Sum_probs=125.5
Q ss_pred CccccCCCCCCChHHhHhhHHHHHHHHHHHHhcCCHHHHHHHhhcCCCeEEeeCChhHhhhChhhhhcCcEEEeecCCCC
Q psy16437 7 LQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVNSISQVFADEHIQDIKLVKEISHEKYG 86 (501)
Q Consensus 7 ~pel~~Dprf~t~~~R~~~~~eL~~~i~~~f~~~t~~ew~~~l~~~~VP~apV~t~~Evl~dpq~~arg~~~~v~~p~~g 86 (501)
..++.++|.|-++.+|+.|+.|+..++++.|.++|++||..+|+..++|+.||+++.||++|+|..+||.|...+||..+
T Consensus 249 ~~~~d~~p~~~tn~~rvtnr~E~~kil~e~f~~kT~~eW~~iFeG~d~cV~PVl~~~EV~~~~hn~~rgsf~~~e~p~~~ 328 (387)
T KOG3957|consen 249 GLKLDENPKQFTNPDRVTNRVELRKILEEVFLEKTRAEWSQIFEGQDACVTPVLDIHEVFHHDHNKDRGSFTKTEHPTSD 328 (387)
T ss_pred CcccccchhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCHHHhccccchhhccceeeeccCCCc
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ceeEecccccccCCCCCCCCCCCCCCCChHHHHHhhcCCChHHHHHHhhhchhhh
Q psy16437 87 DIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLKDLLNYDETTIAKLKEKKILGL 141 (501)
Q Consensus 87 ~~~~~~~p~~fs~~~~~~~~~aP~lGeht~eVL~ellG~s~~ei~~L~~~Gvv~~ 141 (501)
.+..|+|+++++......++++|.+|+||++||.|++.|.+++|.+|..+++|.+
T Consensus 329 ~i~~p~P~v~~s~~~~s~~~~p~i~~qht~eil~E~~~~~~~ei~~L~sd~iie~ 383 (387)
T KOG3957|consen 329 WIPVPGPRVLTSPAKPSAATDPPILGQHTEEILEELLFYRDDEIYQLLSDSIIES 383 (387)
T ss_pred cccCCCCccccCccccccccCCcccchhHHHHHHHhcCCChHHHHHHHhhhhhhh
Confidence 8999999999988777777888999999999999988888899999998888753
No 14
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.82 E-value=0.21 Score=46.17 Aligned_cols=95 Identities=18% Similarity=0.205 Sum_probs=65.1
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
..|.|-+|+=++-..-|--+++.|..+||.|+-+|. ||.|.. +...-|-+...
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~----DPi~al--------------qA~~dGf~v~~--------- 71 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEI----DPIRAL--------------QAAMDGFEVMT--------- 71 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-S----SHHHHH--------------HHHHTT-EEE----------
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEEC----ChHHHH--------------HhhhcCcEecC---------
Confidence 579999999999999999999999999999999984 666654 22233444332
Q ss_pred HHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEeecC
Q psy16437 295 QIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFG 342 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~fG 342 (501)
+.+.+..+||||+.--... =++.+.+.....+.|.+++.-|-
T Consensus 72 --~~~a~~~adi~vtaTG~~~----vi~~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 72 --LEEALRDADIFVTATGNKD----VITGEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp --HHHHTTT-SEEEE-SSSSS----SB-HHHHHHS-TTEEEEESSSST
T ss_pred --HHHHHhhCCEEEECCCCcc----ccCHHHHHHhcCCeEEeccCcCc
Confidence 5678999999998644321 14679999999999999998874
No 15
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.06 E-value=0.29 Score=45.38 Aligned_cols=108 Identities=12% Similarity=0.125 Sum_probs=72.0
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCC------
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFK------ 289 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~------ 289 (501)
-+...+|+=++...+|--|.++|..|||+|+-++.- ....+. .-..+.+.+.+++.
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~--~~~~~~----------------~~~~~~~~i~~~~~~~~~~~ 78 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER--PERLRQ----------------LESLGAYFIEVDYEDHLERK 78 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS--HHHHHH----------------HHHTTTEESEETTTTTTTSB
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC--HHHHHh----------------hhcccCceEEEccccccccc
Confidence 355689999999999999999999999999999841 111111 11223344444321
Q ss_pred ----------ChhhHHHHHHHHhhCCeEEEcCC-hhhhhhcCCCHHHHhhhCCCcEEEEEeec
Q psy16437 290 ----------TPEGQQIIKDLAKQCDVLVENFV-PGKLDRLNLGYKHLSEINSQLIYCSVTGF 341 (501)
Q Consensus 290 ----------~~~g~~~~~~Li~~ADVvi~n~~-pg~l~~lGl~~~~L~~~nP~lI~~~~s~f 341 (501)
...-...|.+.++.+|+||.|.. |+.-.-.=|.-+.++..+|..|.+++|+=
T Consensus 79 ~~~~~~~~~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D 141 (168)
T PF01262_consen 79 DFDKADYYEHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCD 141 (168)
T ss_dssp -CCHHHCHHHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGG
T ss_pred ccchhhhhHHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEec
Confidence 24456789999999999996433 33322223788999999999999999973
No 16
>PRK04148 hypothetical protein; Provisional
Probab=86.96 E-value=3.4 Score=37.04 Aligned_cols=97 Identities=19% Similarity=0.171 Sum_probs=69.6
Q ss_pred CCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHH
Q psy16437 218 SNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQII 297 (501)
Q Consensus 218 ~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~ 297 (501)
+|.||+|++.. .|...+..|+++|.+|+-|+.-. + ..-...+.+-..+.-|+-+|+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~--~----------------aV~~a~~~~~~~v~dDlf~p~~---- 72 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINE--K----------------AVEKAKKLGLNAFVDDLFNPNL---- 72 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH--H----------------HHHHHHHhCCeEEECcCCCCCH----
Confidence 56899999999 88878999999999999998521 1 1112233456788899999998
Q ss_pred HHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEee
Q psy16437 298 KDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTG 340 (501)
Q Consensus 298 ~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~ 340 (501)
++-+.||++.+--.|..|.+-=+ +--++++=+||+..+++
T Consensus 73 -~~y~~a~liysirpp~el~~~~~--~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 73 -EIYKNAKLIYSIRPPRDLQPFIL--ELAKKINVPLIIKPLSG 112 (134)
T ss_pred -HHHhcCCEEEEeCCCHHHHHHHH--HHHHHcCCCEEEEcCCC
Confidence 58889999998888877765211 11235667777655543
No 17
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=86.29 E-value=1.6 Score=40.77 Aligned_cols=96 Identities=13% Similarity=0.049 Sum_probs=66.0
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
..|.|.+|.=++..--|-..+++|..||++|+=+.+..... ..+.. .+- ..
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~----------------~~~~~--~~~---~~-------- 82 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPE----------------EGADE--FGV---EY-------- 82 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHH----------------HHHHH--TTE---EE--------
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChh----------------hhccc--ccc---ee--------
Confidence 57999999999998889999999999999999998643100 00111 111 11
Q ss_pred HHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 295 QIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
.-+.+|++.||||+...+-..--+-=++.+.|....|+.+++.++
T Consensus 83 ~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~a 127 (178)
T PF02826_consen 83 VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVA 127 (178)
T ss_dssp SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESS
T ss_pred eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEecc
Confidence 126789999999997776332223346899999999999999854
No 18
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=85.23 E-value=7 Score=41.06 Aligned_cols=108 Identities=15% Similarity=0.172 Sum_probs=69.9
Q ss_pred CCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHH
Q psy16437 217 LSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQI 296 (501)
Q Consensus 217 L~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~ 296 (501)
+.+-+|+=++...+|=.+.+.|..+||+|+-++.- ....+.. ...-|+ .+..+..+ .+.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~--~~~~~~l---------------~~~~g~-~v~~~~~~---~~~ 223 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN--IDRLRQL---------------DAEFGG-RIHTRYSN---AYE 223 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC--HHHHHHH---------------HHhcCc-eeEeccCC---HHH
Confidence 56778998999999999999999999998888741 1111110 001111 12233332 455
Q ss_pred HHHHHhhCCeEEEcCC-hhhhhhcCCCHHHHhhhCCCcEEEEEeecCCCCC
Q psy16437 297 IKDLAKQCDVLVENFV-PGKLDRLNLGYKHLSEINSQLIYCSVTGFGSKGP 346 (501)
Q Consensus 297 ~~~Li~~ADVvi~n~~-pg~l~~lGl~~~~L~~~nP~lI~~~~s~fG~~Gp 346 (501)
+.+.++.+||||+... |+.-...=++.+.+...+|+-++++++.- +.|.
T Consensus 224 l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d-~GG~ 273 (370)
T TIGR00518 224 IEDAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAID-QGGC 273 (370)
T ss_pred HHHHHccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecC-CCCC
Confidence 7888999999998652 22211112578889889999999998854 3344
No 19
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=81.66 E-value=11 Score=41.50 Aligned_cols=108 Identities=15% Similarity=0.209 Sum_probs=71.2
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCC------
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFK------ 289 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~------ 289 (501)
-..+-||+=++....|=.+.+.+..+||+|+-++.- ++-.+. .. .-|-.-+.+|..
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~--~~rle~--------------a~--~lGa~~v~v~~~e~g~~~ 222 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTR--PEVKEQ--------------VQ--SMGAEFLELDFKEEGGSG 222 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC--HHHHHH--------------HH--HcCCeEEecccccccccc
Confidence 355789999999999999999999999998887741 221111 00 112233333331
Q ss_pred -----------ChhhHHHHHHHHhhCCeEEEcC-ChhhhhhcCCCHHHHhhhCCCcEEEEEeec
Q psy16437 290 -----------TPEGQQIIKDLAKQCDVLVENF-VPGKLDRLNLGYKHLSEINSQLIYCSVTGF 341 (501)
Q Consensus 290 -----------~~~g~~~~~~Li~~ADVvi~n~-~pg~l~~lGl~~~~L~~~nP~lI~~~~s~f 341 (501)
....++.+.+.++.+||+|+.. -||.-.-.=+.-+.+....|+-+.|+++.=
T Consensus 223 ~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 223 DGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred ccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeC
Confidence 1233456777788999999887 244211112566789999999999999874
No 20
>KOG2422|consensus
Probab=79.76 E-value=0.61 Score=50.76 Aligned_cols=9 Identities=11% Similarity=0.268 Sum_probs=4.3
Q ss_pred hhCCCcEEE
Q psy16437 328 EINSQLIYC 336 (501)
Q Consensus 328 ~~nP~lI~~ 336 (501)
+.+|..+..
T Consensus 317 a~hp~F~~~ 325 (665)
T KOG2422|consen 317 ALHPNFIPF 325 (665)
T ss_pred Hhccccccc
Confidence 345555543
No 21
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=78.93 E-value=3.4 Score=40.62 Aligned_cols=71 Identities=27% Similarity=0.362 Sum_probs=47.1
Q ss_pred CCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHH
Q psy16437 217 LSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQI 296 (501)
Q Consensus 217 L~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~ 296 (501)
|.|+||||++-. |..-+.-||.+||.|+=|+.-. ...-.+..+.-+-.+.+|-... .
T Consensus 58 l~g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se-----------------~~I~~Ak~ha~e~gv~i~y~~~----~ 114 (243)
T COG2227 58 LPGLRVLDVGCG--GGILSEPLARLGASVTGIDASE-----------------KPIEVAKLHALESGVNIDYRQA----T 114 (243)
T ss_pred CCCCeEEEecCC--ccHhhHHHHHCCCeeEEecCCh-----------------HHHHHHHHhhhhccccccchhh----h
Confidence 899999999984 5689999999999999987532 1122344444444455554422 2
Q ss_pred HHHHHh---hCCeEEEc
Q psy16437 297 IKDLAK---QCDVLVEN 310 (501)
Q Consensus 297 ~~~Li~---~ADVvi~n 310 (501)
..+|.. ..|||+..
T Consensus 115 ~edl~~~~~~FDvV~cm 131 (243)
T COG2227 115 VEDLASAGGQFDVVTCM 131 (243)
T ss_pred HHHHHhcCCCccEEEEh
Confidence 444544 78999843
No 22
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=78.64 E-value=12 Score=38.07 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=65.9
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
..+.|-||+=++....|=.+.+.|..+|++|+-+..- .... . +.. ..|-+.+ ++
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~--~~~~--------------~-~~~-~~G~~~~--~~------ 201 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARK--SAHL--------------A-RIT-EMGLSPF--HL------ 201 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC--HHHH--------------H-HHH-HcCCeee--cH------
Confidence 4578999999999999989999999999988887642 1110 0 000 1122211 11
Q ss_pred HHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEeec
Q psy16437 295 QIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGF 341 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~f 341 (501)
+.+.+++..+||||....+.. ++.+.+....|+-+++++..-
T Consensus 202 ~~l~~~l~~aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 202 SELAEEVGKIDIIFNTIPALV-----LTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred HHHHHHhCCCCEEEECCChhh-----hhHHHHHcCCCCcEEEEEccC
Confidence 246788899999998765443 456777788899999988754
No 23
>PRK06487 glycerate dehydrogenase; Provisional
Probab=78.49 E-value=14 Score=37.96 Aligned_cols=90 Identities=16% Similarity=0.119 Sum_probs=66.9
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.-|.|-+|.=++..--|-..+++|..||.+|+=+.++. .. ..+ + .
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~--~~---------------~~~------~------------~ 188 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPG--RP---------------ARP------D------------R 188 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCC--Cc---------------ccc------c------------c
Confidence 35999999999998788888999999999999876532 10 000 0 1
Q ss_pred HHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 295 QIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
.-|.+|+++||||+...+-..--+==++.+.|....|+-+++.++
T Consensus 189 ~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~a 233 (317)
T PRK06487 189 LPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTA 233 (317)
T ss_pred cCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECC
Confidence 138899999999997765322223336899999999999998875
No 24
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=75.89 E-value=10 Score=35.92 Aligned_cols=75 Identities=20% Similarity=0.270 Sum_probs=49.3
Q ss_pred CCCCCcEEEE-eCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILD-LTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVld-l~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
.|++.||+|. .|+.--|-..++.+...||+|+-|..|..-++ | .+ --.++..+.+.
T Consensus 15 E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~-----p----------------~~--~~~i~v~sa~e 71 (185)
T PF04127_consen 15 EPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP-----P----------------PG--VKVIRVESAEE 71 (185)
T ss_dssp EESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-------------------------TT--EEEEE-SSHHH
T ss_pred ccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc-----c----------------cc--ceEEEecchhh
Confidence 5899999997 66677788889999999999999997741110 1 11 12455555555
Q ss_pred -HHHHHHHHhhCCeEEEcCC
Q psy16437 294 -QQIIKDLAKQCDVLVENFV 312 (501)
Q Consensus 294 -~~~~~~Li~~ADVvi~n~~ 312 (501)
.+.+.+++..+|++|....
T Consensus 72 m~~~~~~~~~~~Di~I~aAA 91 (185)
T PF04127_consen 72 MLEAVKELLPSADIIIMAAA 91 (185)
T ss_dssp HHHHHHHHGGGGSEEEE-SB
T ss_pred hhhhhccccCcceeEEEecc
Confidence 4788888999999996543
No 25
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=75.06 E-value=12 Score=38.99 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=68.9
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.-|+|-.||=.+-.+-|--+++.|..+||+||-.| -||.|..-. ..-|=+-+.
T Consensus 205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtE----vDPI~AleA--------------~MdGf~V~~--------- 257 (420)
T COG0499 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTE----VDPIRALEA--------------AMDGFRVMT--------- 257 (420)
T ss_pred eeecCceEEEecccccchHHHHHhhcCCCeEEEEe----cCchHHHHH--------------hhcCcEEEE---------
Confidence 57999999999999999999999999999999988 377776421 112223333
Q ss_pred HHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEeec
Q psy16437 295 QIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGF 341 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~f 341 (501)
+.+-+..+||||+.---.- =+..+.+....-+.|.|.+-=|
T Consensus 258 --m~~Aa~~gDifiT~TGnkd----Vi~~eh~~~MkDgaIl~N~GHF 298 (420)
T COG0499 258 --MEEAAKTGDIFVTATGNKD----VIRKEHFEKMKDGAILANAGHF 298 (420)
T ss_pred --hHHhhhcCCEEEEccCCcC----ccCHHHHHhccCCeEEeccccc
Confidence 4466778899997543221 2467888888888888876545
No 26
>PRK06932 glycerate dehydrogenase; Provisional
Probab=74.70 E-value=13 Score=38.25 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=66.1
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
..|.|-+|.=++..--|-..+++|..||.+|+=+.+.. .+. ... +.
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~-~~~--------------------~~~-------------~~ 188 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKG-ASV--------------------CRE-------------GY 188 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCc-ccc--------------------ccc-------------cc
Confidence 36999999999998778888999999999998775321 000 000 11
Q ss_pred HHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 295 QIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
.-|.+|+++||||+-..+-..--+==|+.+.|....|+-|++.++
T Consensus 189 ~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~a 233 (314)
T PRK06932 189 TPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTG 233 (314)
T ss_pred CCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECC
Confidence 238899999999997765222222236889999999999998875
No 27
>PRK13243 glyoxylate reductase; Reviewed
Probab=74.11 E-value=16 Score=37.85 Aligned_cols=94 Identities=9% Similarity=0.047 Sum_probs=65.3
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.-|.|-+|.=++..--|-..++.|..+|.+|+-+.+.. +. ...... |-. .
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~--~~---------------~~~~~~--~~~-----------~ 195 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR--KP---------------EAEKEL--GAE-----------Y 195 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC--Ch---------------hhHHHc--CCE-----------e
Confidence 36999999999998778888899999999998776421 11 001111 111 0
Q ss_pred HHHHHHHhhCCeEEEcCChhh-hhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 295 QIIKDLAKQCDVLVENFVPGK-LDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~-l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
.-+.+|+++||||+...+-.. ...+ ++.+.+....|+-+++.++
T Consensus 196 ~~l~ell~~aDiV~l~lP~t~~T~~~-i~~~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 196 RPLEELLRESDFVSLHVPLTKETYHM-INEERLKLMKPTAILVNTA 240 (333)
T ss_pred cCHHHHHhhCCEEEEeCCCChHHhhc-cCHHHHhcCCCCeEEEECc
Confidence 126789999999998775322 2222 5778899999999998874
No 28
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=71.69 E-value=20 Score=37.02 Aligned_cols=95 Identities=7% Similarity=0.009 Sum_probs=64.1
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHH-HcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLA-DLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LA-dlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
..|.|-+|.=++..--|-..+++|. .||.+|+=..+.. +.. . .... |.+.+
T Consensus 141 ~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~--~~~--------------~-~~~~--~~~~~--------- 192 (323)
T PRK15409 141 TDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRH--HKE--------------A-EERF--NARYC--------- 192 (323)
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCC--chh--------------h-HHhc--CcEec---------
Confidence 3699999998888766777788887 8999998554321 100 0 0001 11111
Q ss_pred HHHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 294 QQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
-|.+|+++||||+...+-..--+==++.+.|....|+-+++.++
T Consensus 193 --~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~a 236 (323)
T PRK15409 193 --DLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAG 236 (323)
T ss_pred --CHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECC
Confidence 17789999999997665332223336889999999999998875
No 29
>PLN02494 adenosylhomocysteinase
Probab=69.89 E-value=26 Score=38.04 Aligned_cols=94 Identities=17% Similarity=0.289 Sum_probs=66.2
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
..|.|-+|+=++...-|-.+++.|..+|++||-+|. |+.|.. ....-|-..+ +
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~----dp~r~~--------------eA~~~G~~vv--~------- 302 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEI----DPICAL--------------QALMEGYQVL--T------- 302 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC----CchhhH--------------HHHhcCCeec--c-------
Confidence 358999999999998899999999999999999884 222211 0111111111 1
Q ss_pred HHHHHHHhhCCeEEEcCChhhhhhcC-CCHHHHhhhCCCcEEEEEeecC
Q psy16437 295 QIIKDLAKQCDVLVENFVPGKLDRLN-LGYKHLSEINSQLIYCSVTGFG 342 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~l~~lG-l~~~~L~~~nP~lI~~~~s~fG 342 (501)
+.++++.+||||+.- +. -+ ++.+.+....|+-|++.+.-|+
T Consensus 303 --leEal~~ADVVI~tT--Gt---~~vI~~e~L~~MK~GAiLiNvGr~~ 344 (477)
T PLN02494 303 --LEDVVSEADIFVTTT--GN---KDIIMVDHMRKMKNNAIVCNIGHFD 344 (477)
T ss_pred --HHHHHhhCCEEEECC--CC---ccchHHHHHhcCCCCCEEEEcCCCC
Confidence 345778999999732 22 23 3678999999999999997775
No 30
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=69.69 E-value=39 Score=34.21 Aligned_cols=95 Identities=12% Similarity=0.113 Sum_probs=64.9
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
-|.|-+|+=++..-.|-..++.|..+|++|+-+.... +.. .... ..|-..+ + .+
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~--~~~--------------~~~~--~~g~~~~--~------~~ 201 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS--ADL--------------ARIT--EMGLIPF--P------LN 201 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH--HHH--------------HHHH--HCCCeee--c------HH
Confidence 5889999999999889899999999999988766421 100 0000 1121111 1 23
Q ss_pred HHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEeec
Q psy16437 296 IIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGF 341 (501)
Q Consensus 296 ~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~f 341 (501)
.+.+++.++||||...+-.. ++.+.+....|+.++++++--
T Consensus 202 ~l~~~l~~aDiVint~P~~i-----i~~~~l~~~k~~aliIDlas~ 242 (287)
T TIGR02853 202 KLEEKVAEIDIVINTIPALV-----LTADVLSKLPKHAVIIDLASK 242 (287)
T ss_pred HHHHHhccCCEEEECCChHH-----hCHHHHhcCCCCeEEEEeCcC
Confidence 46778899999998764332 356778888899998888753
No 31
>PLN02928 oxidoreductase family protein
Probab=69.13 E-value=30 Score=36.04 Aligned_cols=120 Identities=14% Similarity=0.133 Sum_probs=73.7
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.-|.|-+|.=++..--|-..+++|..||++|+=+.+....+.....+ +...+ .+ .+.-... ..
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~------------~~~~~-~~-~~~~~~~---~~ 217 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLL------------IPNGD-VD-DLVDEKG---GH 217 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhc------------ccccc-cc-ccccccC---cc
Confidence 35999999999998778888999999999999886532110100000 00000 00 0000000 12
Q ss_pred HHHHHHHhhCCeEEEcCC--hhhhhhcCCCHHHHhhhCCCcEEEEEeecCCCCCCCCCCcchhHHhhh
Q psy16437 295 QIIKDLAKQCDVLVENFV--PGKLDRLNLGYKHLSEINSQLIYCSVTGFGSKGPYKDRPGYDIIAASI 360 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~--pg~l~~lGl~~~~L~~~nP~lI~~~~s~fG~~Gp~~~~~g~d~~~~A~ 360 (501)
.-|.+|+++||||+...+ |.+ +-=++.+.|....|+-|++.++ .|+ -.--+.+++|+
T Consensus 218 ~~L~ell~~aDiVvl~lPlt~~T--~~li~~~~l~~Mk~ga~lINva----RG~---lVde~AL~~AL 276 (347)
T PLN02928 218 EDIYEFAGEADIVVLCCTLTKET--AGIVNDEFLSSMKKGALLVNIA----RGG---LLDYDAVLAAL 276 (347)
T ss_pred cCHHHHHhhCCEEEECCCCChHh--hcccCHHHHhcCCCCeEEEECC----Ccc---ccCHHHHHHHH
Confidence 348899999999997765 333 2225789999999999999886 232 22355566654
No 32
>KOG2422|consensus
Probab=68.93 E-value=1.6 Score=47.67 Aligned_cols=8 Identities=0% Similarity=0.044 Sum_probs=3.5
Q ss_pred CCCCchhh
Q psy16437 148 NADPVCTR 155 (501)
Q Consensus 148 ~~~~~~~~ 155 (501)
|..++|..
T Consensus 77 ~es~~~~~ 84 (665)
T KOG2422|consen 77 QESRITLA 84 (665)
T ss_pred Cccccccc
Confidence 33345544
No 33
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=68.32 E-value=16 Score=32.34 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=64.4
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
.|+|-+|+=++..-+|-.+...|+++|+.-|.|=... ..|. ..+...+ .+...-.+++.+
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt---~~ra-----------~~l~~~~-~~~~~~~~~~~~----- 68 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT---PERA-----------EALAEEF-GGVNIEAIPLED----- 68 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS---HHHH-----------HHHHHHH-TGCSEEEEEGGG-----
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC---HHHH-----------HHHHHHc-CccccceeeHHH-----
Confidence 6899999999999999999999999999966654322 1111 0112222 222233444433
Q ss_pred HHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCc-EEEEEe
Q psy16437 296 IIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQL-IYCSVT 339 (501)
Q Consensus 296 ~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~l-I~~~~s 339 (501)
+.+++..+||||..-.-+.. -+..+.+....+.+ ++++++
T Consensus 69 -~~~~~~~~DivI~aT~~~~~---~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 69 -LEEALQEADIVINATPSGMP---IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp -HCHHHHTESEEEE-SSTTST---SSTHHHHTTTCHHCSEEEES-
T ss_pred -HHHHHhhCCeEEEecCCCCc---ccCHHHHHHHHhhhhceeccc
Confidence 33788999999976554322 56777777777656 778984
No 34
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=67.76 E-value=31 Score=35.34 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=66.8
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.-|.|-+|.=++..--|-..+++|..||.+|+=+.+.. .. .. ..| . .
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~--~~--------~~-----~~~----------~--------~ 187 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSG--KN--------KN-----EEY----------E--------R 187 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCc--cc--------cc-----cCc----------e--------e
Confidence 36999999999988778888899999999999887532 00 00 001 0 1
Q ss_pred HHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 295 QIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
.-|.+|+++||||+-..+-..--+==++.+.|....|+-+++.++
T Consensus 188 ~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~a 232 (311)
T PRK08410 188 VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVG 232 (311)
T ss_pred ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECC
Confidence 137899999999997765322223336899999999999998875
No 35
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=67.59 E-value=32 Score=37.39 Aligned_cols=94 Identities=16% Similarity=0.239 Sum_probs=66.0
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
..|+|-+|+=++...-|-.+++.|..+|++||-+|.- +.|.. .. ...|-+.+
T Consensus 250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~d----p~~a~-------------~A-~~~G~~~~---------- 301 (476)
T PTZ00075 250 VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEID----PICAL-------------QA-AMEGYQVV---------- 301 (476)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC----chhHH-------------HH-HhcCceec----------
Confidence 4799999999999988888899999999999988742 22211 00 00121111
Q ss_pred HHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEeec
Q psy16437 295 QIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGF 341 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~f 341 (501)
.+.++++.|||||..- +. +-=++.+.+....|+-|++.+.-|
T Consensus 302 -~leell~~ADIVI~at--Gt--~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 302 -TLEDVVETADIFVTAT--GN--KDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred -cHHHHHhcCCEEEECC--Cc--ccccCHHHHhccCCCcEEEEcCCC
Confidence 1567889999999763 32 112577899999999999988544
No 36
>PRK06436 glycerate dehydrogenase; Provisional
Probab=66.28 E-value=44 Score=34.10 Aligned_cols=92 Identities=16% Similarity=0.073 Sum_probs=63.2
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
..|.|-+|.=++..-=|-..+++|..||.+|+-+.+.. .+ . + + +. ..
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~-~~----~--------~----~------~~-~~--------- 164 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSY-VN----D--------G----I------SS-IY--------- 164 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC-cc----c--------C----c------cc-cc---------
Confidence 46999999999988667666789999999999887421 00 0 0 0 00 00
Q ss_pred HHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 295 QIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
.-+.+|+++||+|+...+-..--+==++.+.|....|+-+++.++
T Consensus 165 ~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~s 209 (303)
T PRK06436 165 MEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVA 209 (303)
T ss_pred CCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECC
Confidence 126689999999997776322212123788999999999999874
No 37
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=65.64 E-value=18 Score=33.90 Aligned_cols=106 Identities=18% Similarity=0.069 Sum_probs=62.8
Q ss_pred CCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhh--cCCceEEEEeCCChh
Q psy16437 216 PLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCV--NRNKKSVCVDFKTPE 292 (501)
Q Consensus 216 pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~--nrgKrsv~lDl~~~~ 292 (501)
.|+|-+|+=++. .-.|-.+.+.|+..|++|+-+.+ . .+.... ....+ ..+-+....|+.+.+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R-~-~~~~~~-------------l~~~l~~~~~~~~~~~~~~~~~ 89 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGR-D-LERAQK-------------AADSLRARFGEGVGAVETSDDA 89 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcC-C-HHHHHH-------------HHHHHHhhcCCcEEEeeCCCHH
Confidence 578889999984 77788889999999999887743 1 111100 01111 112234456665544
Q ss_pred hHHHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEeecCC
Q psy16437 293 GQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFGS 343 (501)
Q Consensus 293 g~~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~fG~ 343 (501)
. +.++++++|+||..-.-+.. .-...-...+|..|++++.---.
T Consensus 90 ~---~~~~~~~~diVi~at~~g~~----~~~~~~~~~~~~~vv~D~~~~~~ 133 (194)
T cd01078 90 A---RAAAIKGADVVFAAGAAGVE----LLEKLAWAPKPLAVAADVNAVPP 133 (194)
T ss_pred H---HHHHHhcCCEEEECCCCCce----echhhhcccCceeEEEEccCCCC
Confidence 3 56788899999987655542 11111113345678888765443
No 38
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=65.16 E-value=20 Score=38.04 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=52.5
Q ss_pred CCCCCCcEEEE-eCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChh
Q psy16437 214 SLPLSNVRILD-LTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPE 292 (501)
Q Consensus 214 ~~pL~GlrVld-l~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~ 292 (501)
..|++.||+|. .|+.--|-..++.|+..||+|+-|..+.. .. ++ . ....+|+.+.+
T Consensus 196 ~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~-~~-----~~--------~---------~~~~~~v~~~~ 252 (390)
T TIGR00521 196 REPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVS-LL-----TP--------P---------GVKSIKVSTAE 252 (390)
T ss_pred cCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCc-cC-----CC--------C---------CcEEEEeccHH
Confidence 35788888886 34443567889999999999999875531 00 00 0 01468999988
Q ss_pred hH-HHHH-HHHhhCCeEEEcCCh
Q psy16437 293 GQ-QIIK-DLAKQCDVLVENFVP 313 (501)
Q Consensus 293 g~-~~~~-~Li~~ADVvi~n~~p 313 (501)
.. +.+. ++....|+||.|--.
T Consensus 253 ~~~~~~~~~~~~~~D~~i~~Aav 275 (390)
T TIGR00521 253 EMLEAALNELAKDFDIFISAAAV 275 (390)
T ss_pred HHHHHHHHhhcccCCEEEEcccc
Confidence 87 5444 566678999987654
No 39
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=64.99 E-value=37 Score=36.49 Aligned_cols=94 Identities=18% Similarity=0.200 Sum_probs=65.0
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
.|.|-+|+=++...-|-.+++.|..+||+||-++. |+.|.. ... ..|-+. .+
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~----dp~ra~-------------~A~-~~G~~v--~~-------- 260 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEV----DPICAL-------------QAA-MDGFRV--MT-------- 260 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC----CchhhH-------------HHH-hcCCEe--cC--------
Confidence 47999999999988888999999999999999884 222221 000 112221 11
Q ss_pred HHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEeecC
Q psy16437 296 IIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFG 342 (501)
Q Consensus 296 ~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~fG 342 (501)
+.++++.+||||+.--.. . -++.+.+....++-|++.+.-|.
T Consensus 261 -l~eal~~aDVVI~aTG~~--~--vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 261 -MEEAAELGDIFVTATGNK--D--VITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred -HHHHHhCCCEEEECCCCH--H--HHHHHHHhcCCCCCEEEEcCCCC
Confidence 346678999999864211 1 24557788889999998887775
No 40
>PRK07060 short chain dehydrogenase; Provisional
Probab=64.98 E-value=42 Score=31.97 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=51.3
Q ss_pred CCCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
.+++|-+||=.+. .--|-...+.|+..|++||-+.... .... ......+-..+.+|+.+++.
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~--~~~~---------------~~~~~~~~~~~~~D~~~~~~ 67 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNA--AALD---------------RLAGETGCEPLRLDVGDDAA 67 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCH--HHHH---------------HHHHHhCCeEEEecCCCHHH
Confidence 4578888886664 3557788899999999998876421 0000 00001134567899998876
Q ss_pred HHHHHHHHhhCCeEEEcCC
Q psy16437 294 QQIIKDLAKQCDVLVENFV 312 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~~ 312 (501)
.+.+.+-....|+||+|--
T Consensus 68 v~~~~~~~~~~d~vi~~ag 86 (245)
T PRK07060 68 IRAALAAAGAFDGLVNCAG 86 (245)
T ss_pred HHHHHHHhCCCCEEEECCC
Confidence 4444333345799998874
No 41
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.75 E-value=1.7e+02 Score=29.77 Aligned_cols=122 Identities=14% Similarity=0.136 Sum_probs=72.7
Q ss_pred CCCCCcEEEEeCCc-cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTRI-IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~~-~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
-+|+|-+|+=++.. +.|--.+++|...||.|+-.-+- +
T Consensus 153 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~--------------------------------------t--- 191 (285)
T PRK14191 153 IEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL--------------------------------------T--- 191 (285)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC--------------------------------------c---
Confidence 47999999999997 77766677778899999766321 0
Q ss_pred HHHHHHHHhhCCeEEEcCC-hhhhhhcCCCHHHHhhhCCCcEEEEEee-cCCCCCCCCCCcchhHHhhhhccccccCCCC
Q psy16437 294 QQIIKDLAKQCDVLVENFV-PGKLDRLNLGYKHLSEINSQLIYCSVTG-FGSKGPYKDRPGYDIIAASIGGLLHITGHPD 371 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~~-pg~l~~lGl~~~~L~~~nP~lI~~~~s~-fG~~Gp~~~~~g~d~~~~A~sG~~~~~g~~~ 371 (501)
.-+.+++++|||||.... |+. +..+-+ .|+-|++++.- +-.+|-...-.-|+.+..-.+-+ |
T Consensus 192 -~~l~~~~~~ADIvV~AvG~p~~-----i~~~~v---k~GavVIDvGi~~~~~gklvGDvd~e~v~~~a~~i---T---- 255 (285)
T PRK14191 192 -KDLSFYTQNADIVCVGVGKPDL-----IKASMV---KKGAVVVDIGINRLNDGRLVGDVDFENVAPKASFI---T---- 255 (285)
T ss_pred -HHHHHHHHhCCEEEEecCCCCc-----CCHHHc---CCCcEEEEeecccccCCceeccccHHHHhhhccEE---e----
Confidence 114679999999996653 221 344544 58888888652 11123333333344333222222 2
Q ss_pred CCCcccCcchhhhHHHHHHHHHHHHH
Q psy16437 372 GPPCKVGIASIDLATGLYAHGAVMAA 397 (501)
Q Consensus 372 ~~P~~~~~~~~D~~ag~~aa~a~laA 397 (501)
| .+.+++-..+++..-.-+-++
T Consensus 256 --P--VPGGVGpvT~a~L~~N~~~a~ 277 (285)
T PRK14191 256 --P--VPGGVGPMTIVSLLENTLIAA 277 (285)
T ss_pred --c--CCCCChHHHHHHHHHHHHHHH
Confidence 2 223455556666666555554
No 42
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=64.73 E-value=23 Score=36.34 Aligned_cols=100 Identities=18% Similarity=0.293 Sum_probs=69.2
Q ss_pred cEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHHH
Q psy16437 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIKD 299 (501)
Q Consensus 220 lrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~~ 299 (501)
-+|+=++-.++|--++++...+||+|+-++-- .|.+|... .+| |-| |..=.+++ ..+.+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n--~~rl~~ld----------d~f-----~~r-v~~~~st~---~~iee 227 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLN--IDRLRQLD----------DLF-----GGR-VHTLYSTP---SNIEE 227 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecC--HHHHhhhh----------Hhh-----Cce-eEEEEcCH---HHHHH
Confidence 46888999999999999999999999999952 46666542 112 222 22223344 34889
Q ss_pred HHhhCCeEEEcCC-hhhhhhcCCCHHHHhhhCCCcEEEEEee
Q psy16437 300 LAKQCDVLVENFV-PGKLDRLNLGYKHLSEINSQLIYCSVTG 340 (501)
Q Consensus 300 Li~~ADVvi~n~~-pg~l~~lGl~~~~L~~~nP~lI~~~~s~ 340 (501)
.+..||+||-..- ||.-+--=..-+-++...|+-|.+++..
T Consensus 228 ~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAi 269 (371)
T COG0686 228 AVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAI 269 (371)
T ss_pred HhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEE
Confidence 9999999995443 4432222234455899999999999874
No 43
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=63.83 E-value=9 Score=37.36 Aligned_cols=105 Identities=18% Similarity=0.148 Sum_probs=62.8
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCc---EEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCCh
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAE---VIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTP 291 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~---VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~ 291 (501)
.+|+|.|||=++..-+|-.++..|.+.|+. |+-+.+.+.--..|.. ... .....|... .+++. .+
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~--~L~---~~~~~la~~-~~~~~--~~---- 88 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGRED--DLN---PDKNEIAKE-TNPEK--TG---- 88 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccch--hhh---HHHHHHHHH-hccCc--cc----
Confidence 369999999999999999999999999997 5555542100001100 000 000112221 11111 11
Q ss_pred hhHHHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 292 EGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 292 ~g~~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
. -+.+.+..+||||..-.+|. ++.+.++..+++-|+..++
T Consensus 89 --~-~l~~~l~~~dvlIgaT~~G~-----~~~~~l~~m~~~~ivf~ls 128 (226)
T cd05311 89 --G-TLKEALKGADVFIGVSRPGV-----VKKEMIKKMAKDPIVFALA 128 (226)
T ss_pred --C-CHHHHHhcCCEEEeCCCCCC-----CCHHHHHhhCCCCEEEEeC
Confidence 1 24456678999997776664 4578888888886666776
No 44
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=63.47 E-value=12 Score=39.31 Aligned_cols=99 Identities=14% Similarity=0.157 Sum_probs=55.5
Q ss_pred CCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcC-CceEEEEeCCChhhHH
Q psy16437 217 LSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR-NKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 217 L~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nr-gKrsv~lDl~~~~g~~ 295 (501)
+.|-+||||.... | .-+..||..|++|+=||-- ++..... .......+. +-+-+..|+ .+
T Consensus 232 ~~~~~vLDL~cG~-G-~~~l~la~~~~~v~~vE~~--~~av~~a----------~~N~~~~~~~~~~~~~~d~-----~~ 292 (374)
T TIGR02085 232 IPVTQMWDLFCGV-G-GFGLHCAGPDTQLTGIEIE--SEAIACA----------QQSAQMLGLDNLSFAALDS-----AK 292 (374)
T ss_pred cCCCEEEEccCCc-c-HHHHHHhhcCCeEEEEECC--HHHHHHH----------HHHHHHcCCCcEEEEECCH-----HH
Confidence 4678999999876 4 4466677889999999952 2221110 000111111 112223332 22
Q ss_pred HHHHHHhhCCeEEEcCChhhhhhcCCCHHH---HhhhCC-CcEEEEEe
Q psy16437 296 IIKDLAKQCDVLVENFVPGKLDRLNLGYKH---LSEINS-QLIYCSVT 339 (501)
Q Consensus 296 ~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~---L~~~nP-~lI~~~~s 339 (501)
.+..+....|+||.| +|. -|++.+. |.+.+| +|||++..
T Consensus 293 ~~~~~~~~~D~vi~D-PPr----~G~~~~~l~~l~~~~p~~ivyvsc~ 335 (374)
T TIGR02085 293 FATAQMSAPELVLVN-PPR----RGIGKELCDYLSQMAPKFILYSSCN 335 (374)
T ss_pred HHHhcCCCCCEEEEC-CCC----CCCcHHHHHHHHhcCCCeEEEEEeC
Confidence 233333458999888 453 3887766 444566 88888864
No 45
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=62.92 E-value=24 Score=36.21 Aligned_cols=94 Identities=12% Similarity=0.055 Sum_probs=63.5
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
.|.|.+|.=++..-=|--.++.|..||.+|+-+.+.. .. .+ + +. .. . +.+
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~--~~----~~------~----~~---------~~--~---~~~ 182 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSR--KS----WP------G----VQ---------SF--A---GRE 182 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC--CC----CC------C----ce---------ee--c---ccc
Confidence 5889999888887667667888889999998876421 00 00 0 00 00 0 123
Q ss_pred HHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 296 IIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 296 ~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
-+.+++++||||+...+-..--+==++.+.|....|+-|++.++
T Consensus 183 ~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 183 ELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred cHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 48899999999998776322222123688899999999998875
No 46
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=62.05 E-value=32 Score=37.15 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=31.1
Q ss_pred CCCcE-EEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 217 LSNVR-ILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 217 L~Glr-Vldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
++++| |+|..+..+++++.++|-.+|++|+-+.+
T Consensus 163 ~~~lkIvvD~~~G~~~~~~~~ll~~lG~~v~~l~~ 197 (459)
T cd03088 163 LKGLRIGVYQHSSVGRDLLVRILEALGAEVVPLGR 197 (459)
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHcCCeEEEeCC
Confidence 57889 88999999999999999999999998864
No 47
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=61.15 E-value=4.8 Score=39.38 Aligned_cols=6 Identities=17% Similarity=0.163 Sum_probs=2.4
Q ss_pred chhhhh
Q psy16437 137 KILGLI 142 (501)
Q Consensus 137 Gvv~~~ 142 (501)
|++.+.
T Consensus 194 Gf~eSF 199 (232)
T TIGR00869 194 GFLDSF 199 (232)
T ss_pred Ccceee
Confidence 444333
No 48
>PLN02342 ornithine carbamoyltransferase
Probab=61.12 E-value=46 Score=34.75 Aligned_cols=101 Identities=10% Similarity=0.008 Sum_probs=62.5
Q ss_pred CCCCCcEEEEeCCccc-hhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhh-hcCC--ceEEEEeCCC
Q psy16437 215 LPLSNVRILDLTRIIA-GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTC-VNRN--KKSVCVDFKT 290 (501)
Q Consensus 215 ~pL~GlrVldl~~~~a-gp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~-~nrg--Krsv~lDl~~ 290 (501)
+.|+|++|.=++..-- .-.-..+|+-+|++|+-+-|+.. .+ + ...... .+.| +-.++=|
T Consensus 190 G~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~-~~------~-------~~~~~~a~~~g~~~~~~~~d--- 252 (348)
T PLN02342 190 GRLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGY-EP------D-------AKTVEKARAAGISKIEITND--- 252 (348)
T ss_pred CCcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCccc-cc------C-------HHHHHHHHHhCCCcEEEEcC---
Confidence 4699999997776322 12346678899999998887652 11 0 011111 1223 2333333
Q ss_pred hhhHHHHHHHHhhCCeEEEc----CC--h------hhhhhcCCCHHHHhhhCCCcEEEEE
Q psy16437 291 PEGQQIIKDLAKQCDVLVEN----FV--P------GKLDRLNLGYKHLSEINSQLIYCSV 338 (501)
Q Consensus 291 ~~g~~~~~~Li~~ADVvi~n----~~--p------g~l~~lGl~~~~L~~~nP~lI~~~~ 338 (501)
+.+.+++||||... +. . .....++++.+-+...+|+.|+.+-
T Consensus 253 ------~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp 306 (348)
T PLN02342 253 ------PAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC 306 (348)
T ss_pred ------HHHHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC
Confidence 55788999999976 21 1 1234588998888888888877654
No 49
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=61.02 E-value=33 Score=33.43 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=50.8
Q ss_pred CCCCCCcEEEE-eCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChh
Q psy16437 214 SLPLSNVRILD-LTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPE 292 (501)
Q Consensus 214 ~~pL~GlrVld-l~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~ 292 (501)
..|++.||+|. .|+..-|-..++.|+..|++|+-|-.+. +. .+. . ..+-+.+.++ ...+
T Consensus 11 ~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~--~~-----~~~----------~--~~~v~~i~v~-s~~~ 70 (229)
T PRK06732 11 TEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKT--AV-----KPE----------P--HPNLSIIEIE-NVDD 70 (229)
T ss_pred ccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECcc--cc-----cCC----------C--CCCeEEEEEe-cHHH
Confidence 46899999998 6666667778888999999999986432 10 000 0 0122223322 1122
Q ss_pred hHHHHHHHHhhCCeEEEcCCh
Q psy16437 293 GQQIIKDLAKQCDVLVENFVP 313 (501)
Q Consensus 293 g~~~~~~Li~~ADVvi~n~~p 313 (501)
-.+.+.+.+...|+||+|-..
T Consensus 71 m~~~l~~~~~~~DivIh~AAv 91 (229)
T PRK06732 71 LLETLEPLVKDHDVLIHSMAV 91 (229)
T ss_pred HHHHHHHHhcCCCEEEeCCcc
Confidence 345667778889999988753
No 50
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=60.58 E-value=61 Score=35.69 Aligned_cols=108 Identities=15% Similarity=0.208 Sum_probs=66.3
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCC-----
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKT----- 290 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~----- 290 (501)
...|-+|+=++...+|=.+.+.+..+||+|+-++. . .+-.... ..-|-+-+.+|...
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~-~-~~rle~a----------------eslGA~~v~i~~~e~~~~~ 223 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDT-R-PEVAEQV----------------ESMGAEFLELDFEEEGGSG 223 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeC-C-HHHHHHH----------------HHcCCeEEEeccccccccc
Confidence 45699999999999999999999999999887774 1 2111110 00122222232211
Q ss_pred --------hh----hHHHHHHHHhhCCeEEEcCC-hhhhhhcCCCHHHHhhhCCCcEEEEEeec
Q psy16437 291 --------PE----GQQIIKDLAKQCDVLVENFV-PGKLDRLNLGYKHLSEINSQLIYCSVTGF 341 (501)
Q Consensus 291 --------~~----g~~~~~~Li~~ADVvi~n~~-pg~l~~lGl~~~~L~~~nP~lI~~~~s~f 341 (501)
.+ -++.+.+.++.+||||+..- |+.-...-+..+.+....|+=+.++++..
T Consensus 224 ~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 224 DGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAE 287 (509)
T ss_pred cchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccC
Confidence 11 12344555678999998774 33211111235778888898888888763
No 51
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=60.05 E-value=21 Score=36.85 Aligned_cols=109 Identities=15% Similarity=0.217 Sum_probs=71.9
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
..|.|.+|.=++...-|-..++.|..+|.+|+-+.+.. +. ...+. + -.
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~--~~--------------~~~~~-------------~---~~ 189 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYP--NK--------------DLDFL-------------T---YK 189 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCh--hH--------------hhhhh-------------h---cc
Confidence 46999999888988778777889999999999886421 00 00000 0 01
Q ss_pred HHHHHHHhhCCeEEEcCChhh--hhhcCCCHHHHhhhCCCcEEEEEeecCCCCCCCCCCcchhHHhhh-hccc
Q psy16437 295 QIIKDLAKQCDVLVENFVPGK--LDRLNLGYKHLSEINSQLIYCSVTGFGSKGPYKDRPGYDIIAASI-GGLL 364 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~--l~~lGl~~~~L~~~nP~lI~~~~s~fG~~Gp~~~~~g~d~~~~A~-sG~~ 364 (501)
.-+.+++++||+|+...+-.. ..- ++.+.+....|+-|++.++ .|+ -.-.+.+++|+ +|-.
T Consensus 190 ~~l~ell~~aDiVil~lP~t~~t~~l--i~~~~l~~mk~gavlIN~a----RG~---~vd~~aL~~aL~~g~i 253 (330)
T PRK12480 190 DSVKEAIKDADIISLHVPANKESYHL--FDKAMFDHVKKGAILVNAA----RGA---VINTPDLIAAVNDGTL 253 (330)
T ss_pred CCHHHHHhcCCEEEEeCCCcHHHHHH--HhHHHHhcCCCCcEEEEcC----Ccc---ccCHHHHHHHHHcCCe
Confidence 126789999999998876432 222 4678888889999988875 222 22355566655 4543
No 52
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=59.40 E-value=72 Score=32.58 Aligned_cols=101 Identities=11% Similarity=0.036 Sum_probs=63.4
Q ss_pred CCCCCcEEEEeCCc-cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhh---hhhcCCceEEEEeCCC
Q psy16437 215 LPLSNVRILDLTRI-IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYF---TCVNRNKKSVCVDFKT 290 (501)
Q Consensus 215 ~pL~GlrVldl~~~-~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f---~~~nrgKrsv~lDl~~ 290 (501)
+.|+|++|.=++.. -..-.-..+|+-+|++|.-+-|+.. .+ + .... ..-+.++-.+.=|
T Consensus 148 g~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~-~~------~-------~~~~~~~~~~~g~~~~~~~d--- 210 (304)
T PRK00779 148 GSLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGY-EP------D-------PEIVEKIAKETGASIEVTHD--- 210 (304)
T ss_pred CCcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCccc-CC------C-------HHHHHHHHHHcCCeEEEEcC---
Confidence 35999999877661 1123446788999999999887642 11 0 0111 1112233223322
Q ss_pred hhhHHHHHHHHhhCCeEEEc----CC--------hhhhhhcCCCHHHHhhhCCCcEEEEE
Q psy16437 291 PEGQQIIKDLAKQCDVLVEN----FV--------PGKLDRLNLGYKHLSEINSQLIYCSV 338 (501)
Q Consensus 291 ~~g~~~~~~Li~~ADVvi~n----~~--------pg~l~~lGl~~~~L~~~nP~lI~~~~ 338 (501)
+.+.+++||||... ++ -.....++++.+-+...+|+.|+.+-
T Consensus 211 ------~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp 264 (304)
T PRK00779 211 ------PKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC 264 (304)
T ss_pred ------HHHHhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC
Confidence 55788999999975 11 12345789999988888999888763
No 53
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=58.85 E-value=43 Score=35.71 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=63.7
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
.+.|-+|+=++...-|=.+++.|..+|++||-+|. |+.|.. .....|-+. .+
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~----dp~r~~--------------~A~~~G~~v--~~-------- 243 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEV----DPIRAL--------------EAAMDGFRV--MT-------- 243 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeC----ChhhHH--------------HHHhcCCEe--CC--------
Confidence 58999999999998899999999999999999984 232321 001112111 11
Q ss_pred HHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEeecC
Q psy16437 296 IIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFG 342 (501)
Q Consensus 296 ~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~fG 342 (501)
+.++++.+||||+.-- .- --++.+.+....|+-|++.+.-|.
T Consensus 244 -leeal~~aDVVItaTG--~~--~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 244 -MEEAAKIGDIFITATG--NK--DVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred -HHHHHhcCCEEEECCC--CH--HHHHHHHHhcCCCCcEEEEECCCC
Confidence 2346789999997532 11 113456777888999998887774
No 54
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=57.98 E-value=56 Score=33.89 Aligned_cols=107 Identities=15% Similarity=0.067 Sum_probs=60.7
Q ss_pred CCCCCcEEEEeCCc--cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChh
Q psy16437 215 LPLSNVRILDLTRI--IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPE 292 (501)
Q Consensus 215 ~pL~GlrVldl~~~--~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~ 292 (501)
+.|+|++|.=++.. -..-.-..+|+-+|++|.-+-|+.. ++. ...- .....+.....++-.++=|
T Consensus 151 g~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~-~~~-----~~~~--~~~~~~~~~~g~~~~~~~d----- 217 (331)
T PRK02102 151 GPLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKEL-WPE-----EELV--ALAREIAKETGAKITITED----- 217 (331)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCccc-ccC-----HHHH--HHHHHHHHHcCCeEEEEcC-----
Confidence 46999999977764 1223346678899999999987642 110 0000 0000011111223333333
Q ss_pred hHHHHHHHHhhCCeEEEcCC------------hhhhhhcCCCHHHHh-hhCCCcEEEEE
Q psy16437 293 GQQIIKDLAKQCDVLVENFV------------PGKLDRLNLGYKHLS-EINSQLIYCSV 338 (501)
Q Consensus 293 g~~~~~~Li~~ADVvi~n~~------------pg~l~~lGl~~~~L~-~~nP~lI~~~~ 338 (501)
+.+.+++||||...-- -..+..++++.+-+. ..+|+.|+.+.
T Consensus 218 ----~~ea~~~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~ 272 (331)
T PRK02102 218 ----PEEAVKGADVIYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHC 272 (331)
T ss_pred ----HHHHhCCCCEEEEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECC
Confidence 5578899999997521 112346778877776 36888877653
No 55
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=56.88 E-value=49 Score=27.59 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=27.3
Q ss_pred EEEEeCCccchhHHHHHHHHcCCcEEEEecC
Q psy16437 221 RILDLTRIIAGPFCTMLLADLGAEVIKVEQP 251 (501)
Q Consensus 221 rVldl~~~~agp~a~~~LAdlGA~VIKVE~p 251 (501)
-|||..+..++.+..++|-.+|++||.+...
T Consensus 24 ivvD~~~G~~~~~~~~ll~~lg~~~~~~n~~ 54 (104)
T PF02879_consen 24 IVVDCMNGAGSDILPRLLERLGCDVIELNCD 54 (104)
T ss_dssp EEEE-TTSTTHHHHHHHHHHTTCEEEEESSS
T ss_pred EEEECCCCHHHHHHHHHHHHcCCcEEEEecc
Confidence 4789999999999999999999999998753
No 56
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=56.16 E-value=67 Score=32.80 Aligned_cols=103 Identities=12% Similarity=0.069 Sum_probs=62.4
Q ss_pred CCCCCcEEEEeCCc---cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhh-hhhcC-CceEEEEeCC
Q psy16437 215 LPLSNVRILDLTRI---IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYF-TCVNR-NKKSVCVDFK 289 (501)
Q Consensus 215 ~pL~GlrVldl~~~---~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f-~~~nr-gKrsv~lDl~ 289 (501)
+.|+|++|.=++.. -..-..-.+++-+|++|.-+-|+..-.+ ..+. ...+. ++-.+.=|
T Consensus 146 g~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~--------------~~~~~~~~~~G~~v~~~~d-- 209 (301)
T TIGR00670 146 GRLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMP--------------KEILEELKAKGIKVRETES-- 209 (301)
T ss_pred CCCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCC--------------HHHHHHHHHcCCEEEEECC--
Confidence 46999999987774 2234557789999999999987653100 0011 11122 23233333
Q ss_pred ChhhHHHHHHHHhhCCeEEEcCC--------h---hhhhhcCCCHHHHhhhCCCcEEEEEee
Q psy16437 290 TPEGQQIIKDLAKQCDVLVENFV--------P---GKLDRLNLGYKHLSEINSQLIYCSVTG 340 (501)
Q Consensus 290 ~~~g~~~~~~Li~~ADVvi~n~~--------p---g~l~~lGl~~~~L~~~nP~lI~~~~s~ 340 (501)
+.+-+++||||...-- + .....++++.+-|...+|+.|+.+.-+
T Consensus 210 -------~~~a~~~aDvvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclP 264 (301)
T TIGR00670 210 -------LEEVIDEADVLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLP 264 (301)
T ss_pred -------HHHHhCCCCEEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCC
Confidence 5578889999997310 1 123356777777777788877765433
No 57
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=56.01 E-value=45 Score=35.55 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=64.9
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.-|.|-+|-=++..--|-..++.|..||.+|+=..+.. . . . .. + +. ..
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~-~-----~--~-------------~~-~---~~-------~~ 194 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIED-K-----L--P-------------LG-N---AR-------QV 194 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc-c-----c--c-------------cC-C---ce-------ec
Confidence 35999999999988778888899999999999887421 0 0 0 00 0 00 01
Q ss_pred HHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 295 QIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
.-|.+|++.||||+-..+-..--+==++.+.|....|+-+++.++
T Consensus 195 ~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~a 239 (409)
T PRK11790 195 GSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINAS 239 (409)
T ss_pred CCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECC
Confidence 137899999999997765322122225788999999999988875
No 58
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=55.68 E-value=18 Score=36.91 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=26.2
Q ss_pred CCCcEEEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 217 LSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 217 L~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
+.+-+|||++... |. -+..||..|++|+=||.
T Consensus 172 ~~~~~VLDl~cG~-G~-~sl~la~~~~~V~gvD~ 203 (315)
T PRK03522 172 LPPRSMWDLFCGV-GG-FGLHCATPGMQLTGIEI 203 (315)
T ss_pred cCCCEEEEccCCC-CH-HHHHHHhcCCEEEEEeC
Confidence 4578999999977 43 46778889999999995
No 59
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.11 E-value=82 Score=33.57 Aligned_cols=84 Identities=20% Similarity=0.248 Sum_probs=55.0
Q ss_pred CCCCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChh
Q psy16437 214 SLPLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPE 292 (501)
Q Consensus 214 ~~pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~ 292 (501)
..++.|-+||=.+. .--|-..++.|+..|++||-+..+...+..+. .....+-..+.+|+.+++
T Consensus 205 ~~~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~---------------~~~~~~~~~~~~Dv~~~~ 269 (450)
T PRK08261 205 DRPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAA---------------VANRVGGTALALDITAPD 269 (450)
T ss_pred ccCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHH---------------HHHHcCCeEEEEeCCCHH
Confidence 35788888877764 33467888899999999998865421111110 001113356889999998
Q ss_pred hHHHHHHHHh----hCCeEEEcCC
Q psy16437 293 GQQIIKDLAK----QCDVLVENFV 312 (501)
Q Consensus 293 g~~~~~~Li~----~ADVvi~n~~ 312 (501)
..+.+.+.+. ..|+||+|--
T Consensus 270 ~~~~~~~~~~~~~g~id~vi~~AG 293 (450)
T PRK08261 270 APARIAEHLAERHGGLDIVVHNAG 293 (450)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCC
Confidence 8766666554 4799999863
No 60
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=55.04 E-value=26 Score=34.63 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=51.2
Q ss_pred CCCCCCcEEEEeCCccchhHHHHHHHHcCC-cEEEEecCCCCCcc--cccCCCCCCCCCcchhhhhhcCCceEEEEeCCC
Q psy16437 214 SLPLSNVRILDLTRIIAGPFCTMLLADLGA-EVIKVEQPVTGDEC--RKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKT 290 (501)
Q Consensus 214 ~~pL~GlrVldl~~~~agp~a~~~LAdlGA-~VIKVE~p~~gD~~--R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~ 290 (501)
-+|=.|-||||.|+.+ .|.+---..-|| .||-||- . ++-+ +...| |.+|=.++.+++-.
T Consensus 130 V~~~~G~rVLDtC~GL--GYtAi~a~~rGA~~VitvEk-d-p~VLeLa~lNP--------------wSr~l~~~~i~iil 191 (287)
T COG2521 130 VKVKRGERVLDTCTGL--GYTAIEALERGAIHVITVEK-D-PNVLELAKLNP--------------WSRELFEIAIKIIL 191 (287)
T ss_pred eccccCCEeeeeccCc--cHHHHHHHHcCCcEEEEEee-C-CCeEEeeccCC--------------CCccccccccEEec
Confidence 3577899999999988 377777778999 9999995 2 3322 22111 23444444455544
Q ss_pred hhhHHHHHHHHhh-CCeEEEcC
Q psy16437 291 PEGQQIIKDLAKQ-CDVLVENF 311 (501)
Q Consensus 291 ~~g~~~~~~Li~~-ADVvi~n~ 311 (501)
-+--+++.++=.. .|++|+.-
T Consensus 192 GD~~e~V~~~~D~sfDaIiHDP 213 (287)
T COG2521 192 GDAYEVVKDFDDESFDAIIHDP 213 (287)
T ss_pred ccHHHHHhcCCccccceEeeCC
Confidence 4455556665444 78998763
No 61
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=54.93 E-value=81 Score=32.59 Aligned_cols=114 Identities=11% Similarity=0.117 Sum_probs=76.4
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
..|.|-+|-=++..-=|-..++.|..||.+|+=-.+... +.. ....+-+- +
T Consensus 142 ~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~-----------------~~~~~~~y--~-------- 192 (324)
T COG1052 142 FDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEA-----------------EKELGARY--V-------- 192 (324)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHH-----------------HhhcCcee--c--------
Confidence 468899998888887788899999999999998875421 100 00000000 1
Q ss_pred HHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEeecCCCCCCCCCCcchhHHhhh-hcccc
Q psy16437 295 QIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFGSKGPYKDRPGYDIIAASI-GGLLH 365 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~fG~~Gp~~~~~g~d~~~~A~-sG~~~ 365 (501)
. |.+|+++||||+-+.+-..--+-=++.+.|...+|+.|++.++ - |+- .-.+.+++|. +|-..
T Consensus 193 ~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNta-R---G~~---VDe~ALi~AL~~g~i~ 256 (324)
T COG1052 193 D-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTA-R---GGL---VDEQALIDALKSGKIA 256 (324)
T ss_pred c-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECC-C---ccc---cCHHHHHHHHHhCCcc
Confidence 1 7799999999998886544444447899999999999998763 3 222 2255566554 44433
No 62
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=54.03 E-value=44 Score=31.02 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=55.3
Q ss_pred CCCCCcEEEEeCCc-cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTRI-IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~~-~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
..|.|-+|+=++.. +.|-.++++|...|++|+-+.+- +
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~----------------------~------------------- 78 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK----------------------T------------------- 78 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC----------------------c-------------------
Confidence 46999999999998 46888999999999987655420 0
Q ss_pred HHHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 294 QQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
+.+.+++.+|||||....-.. + ++.+.++ ++.++++++
T Consensus 79 -~~l~~~l~~aDiVIsat~~~~---i-i~~~~~~---~~~viIDla 116 (168)
T cd01080 79 -KNLKEHTKQADIVIVAVGKPG---L-VKGDMVK---PGAVVIDVG 116 (168)
T ss_pred -hhHHHHHhhCCEEEEcCCCCc---e-ecHHHcc---CCeEEEEcc
Confidence 246679999999996654321 2 5666553 468888876
No 63
>PRK07574 formate dehydrogenase; Provisional
Probab=53.82 E-value=41 Score=35.62 Aligned_cols=95 Identities=13% Similarity=0.096 Sum_probs=64.4
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.-|.|.+|.=++..--|-..++.|..||.+|+-+.+.. .+. ...... +.+. .
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~-~~~---------------~~~~~~---------g~~~---~ 239 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHR-LPE---------------EVEQEL---------GLTY---H 239 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-Cch---------------hhHhhc---------Ccee---c
Confidence 35999999988887667677888899999999876422 000 000000 1111 1
Q ss_pred HHHHHHHhhCCeEEEcCC--hhhhhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 295 QIIKDLAKQCDVLVENFV--PGKLDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~--pg~l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
.-+.+|++.||||+.+.+ |.+ +.+ |+.+.|....|+-+++.++
T Consensus 240 ~~l~ell~~aDvV~l~lPlt~~T-~~l-i~~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 240 VSFDSLVSVCDVVTIHCPLHPET-EHL-FDADVLSRMKRGSYLVNTA 284 (385)
T ss_pred CCHHHHhhcCCEEEEcCCCCHHH-HHH-hCHHHHhcCCCCcEEEECC
Confidence 127789999999998876 332 222 5789999999999988864
No 64
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.75 E-value=85 Score=30.41 Aligned_cols=82 Identities=21% Similarity=0.129 Sum_probs=50.8
Q ss_pred CCCCCcEEEEeCCc---cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhc-CCceEEEEeCCC
Q psy16437 215 LPLSNVRILDLTRI---IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVN-RNKKSVCVDFKT 290 (501)
Q Consensus 215 ~pL~GlrVldl~~~---~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~n-rgKrsv~lDl~~ 290 (501)
+.|+|-+||=.+.. -=|-..++.|+..|++||-+-.. + +.. .....++ ..-..+.+|+.+
T Consensus 3 ~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~---~--~~~-----------~~~~~~~~~~~~~~~~Dl~~ 66 (252)
T PRK06079 3 GILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN---D--RMK-----------KSLQKLVDEEDLLVECDVAS 66 (252)
T ss_pred cccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc---h--HHH-----------HHHHhhccCceeEEeCCCCC
Confidence 34777777776643 23677889999999999976321 1 100 0011111 123568899999
Q ss_pred hhhHHHHH-HHH---hhCCeEEEcCC
Q psy16437 291 PEGQQIIK-DLA---KQCDVLVENFV 312 (501)
Q Consensus 291 ~~g~~~~~-~Li---~~ADVvi~n~~ 312 (501)
++..+.+. ++. ..-|+||.|.-
T Consensus 67 ~~~v~~~~~~~~~~~g~iD~lv~nAg 92 (252)
T PRK06079 67 DESIERAFATIKERVGKIDGIVHAIA 92 (252)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEccc
Confidence 98875444 333 34799999863
No 65
>PRK06523 short chain dehydrogenase; Provisional
Probab=52.70 E-value=1e+02 Score=29.66 Aligned_cols=77 Identities=22% Similarity=0.226 Sum_probs=50.5
Q ss_pred CCCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
..|+|-+||=.+. .--|-..++.|++.|++||-+-... +. ....+-..+.+|+.+++.
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~--~~-------------------~~~~~~~~~~~D~~~~~~ 63 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSR--PD-------------------DLPEGVEFVAADLTTAEG 63 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCCh--hh-------------------hcCCceeEEecCCCCHHH
Confidence 3578888887774 2336788889999999999875422 00 001122457899999988
Q ss_pred HHHHHHHH----hhCCeEEEcCC
Q psy16437 294 QQIIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 294 ~~~~~~Li----~~ADVvi~n~~ 312 (501)
.+.+.+-+ ...|+||+|--
T Consensus 64 ~~~~~~~~~~~~~~id~vi~~ag 86 (260)
T PRK06523 64 CAAVARAVLERLGGVDILVHVLG 86 (260)
T ss_pred HHHHHHHHHHHcCCCCEEEECCc
Confidence 65544333 34699998864
No 66
>PF13945 NST1: Salt tolerance down-regulator
Probab=52.32 E-value=3.2 Score=39.36 Aligned_cols=7 Identities=43% Similarity=0.843 Sum_probs=2.6
Q ss_pred EEEeecC
Q psy16437 336 CSVTGFG 342 (501)
Q Consensus 336 ~~~s~fG 342 (501)
|+.+--|
T Consensus 142 C~C~vCg 148 (190)
T PF13945_consen 142 CSCSVCG 148 (190)
T ss_pred cccHHHh
Confidence 3333333
No 67
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=52.10 E-value=85 Score=32.11 Aligned_cols=96 Identities=19% Similarity=0.165 Sum_probs=61.7
Q ss_pred CCCCCcEEEEeCCcc---chhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCCh
Q psy16437 215 LPLSNVRILDLTRII---AGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTP 291 (501)
Q Consensus 215 ~pL~GlrVldl~~~~---agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~ 291 (501)
+.|+|++|+=++... ..-....+|+-+|++|+-+-|+.. + |.. +. +..++=|
T Consensus 152 G~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~-~------~~~---------~~-----~~~~~~d---- 206 (305)
T PRK00856 152 GRLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTL-L------PEG---------MP-----EYGVHTD---- 206 (305)
T ss_pred CCCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCccc-C------ccc---------cc-----ceEEECC----
Confidence 459999999887642 234557789999999999887652 1 110 00 0123333
Q ss_pred hhHHHHHHHHhhCCeEEEcC----C------h---hhhhhcCCCHHHHhhhCCCcEEEEEee
Q psy16437 292 EGQQIIKDLAKQCDVLVENF----V------P---GKLDRLNLGYKHLSEINSQLIYCSVTG 340 (501)
Q Consensus 292 ~g~~~~~~Li~~ADVvi~n~----~------p---g~l~~lGl~~~~L~~~nP~lI~~~~s~ 340 (501)
+.+-+++||||...- + + .....+.++.+-+...+|+.|+.+.-+
T Consensus 207 -----~~ea~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHcLP 263 (305)
T PRK00856 207 -----LDEVIEDADVVMMLRVQKERMDGGLLPSYEEYKRSYGLTAERLALAKPDAIVMHPGP 263 (305)
T ss_pred -----HHHHhCCCCEEEECCcccccccccchHHHHHHhccCccCHHHHhhcCCCCEEECCCC
Confidence 456789999999742 1 1 233467888888877888887766443
No 68
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=52.02 E-value=61 Score=35.74 Aligned_cols=95 Identities=12% Similarity=0.118 Sum_probs=64.3
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
..|.|-+|.=++..--|-..++.|..||.+|+-+.+.. ... . .... |-. ..
T Consensus 134 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~--~~~--------------~-~~~~--g~~--~~-------- 184 (525)
T TIGR01327 134 TELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYI--SPE--------------R-AEQL--GVE--LV-------- 184 (525)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC--Chh--------------H-HHhc--CCE--Ec--------
Confidence 36999999988888777777888899999999886421 100 0 0000 100 01
Q ss_pred HHHHHHHhhCCeEEEcCChhh-hhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 295 QIIKDLAKQCDVLVENFVPGK-LDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~-l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
+-+.+|+++||+|+...+-.. .+.+ ++.+.|....|+-+++.++
T Consensus 185 ~~l~ell~~aDvV~l~lPlt~~T~~l-i~~~~l~~mk~ga~lIN~a 229 (525)
T TIGR01327 185 DDLDELLARADFITVHTPLTPETRGL-IGAEELAKMKKGVIIVNCA 229 (525)
T ss_pred CCHHHHHhhCCEEEEccCCChhhccC-cCHHHHhcCCCCeEEEEcC
Confidence 127789999999997766321 2223 5788899999998888765
No 69
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=51.85 E-value=74 Score=35.05 Aligned_cols=115 Identities=18% Similarity=0.305 Sum_probs=65.2
Q ss_pred CCCCcEEEEeCCccchhHHHHHHH-HcCCcEEEEecCC--CCCcccccCCCCCCCCCcchhhhhhcCCceEEEEe-CCCh
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLA-DLGAEVIKVEQPV--TGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVD-FKTP 291 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LA-dlGA~VIKVE~p~--~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lD-l~~~ 291 (501)
-|.|-||+=.+...---..+++|. ++|.+|+-+-... .+|..+ ....-++-.+.+| +..-
T Consensus 325 ~L~GKrvai~~gg~~~~~~~~~l~~ElGmevv~~~t~~~~~~d~~~----------------~~~~~~~~~~~i~D~~~~ 388 (513)
T TIGR01861 325 RLKGKKVCLWPGGSKLWHWAHVIEEEMGLKVVSVYSKFGHQGDMEK----------------GVARCGEGALAIDDPNEL 388 (513)
T ss_pred hcCCCEEEEECCchHHHHHHHHHHHhCCCEEEEEeccCCCHHHHHH----------------HHHhCCCCcEEecCCCHH
Confidence 589999987764322223455555 7999999885432 011100 0112244455554 5554
Q ss_pred hhHHHHHHHHhhCCeEEEcCChhhh-hhcCCCHHHHhhhCCCcEEEEEeecCCCCCCCCCCcchhHHhhhh
Q psy16437 292 EGQQIIKDLAKQCDVLVENFVPGKL-DRLNLGYKHLSEINSQLIYCSVTGFGSKGPYKDRPGYDIIAASIG 361 (501)
Q Consensus 292 ~g~~~~~~Li~~ADVvi~n~~pg~l-~~lGl~~~~L~~~nP~lI~~~~s~fG~~Gp~~~~~g~d~~~~A~s 361 (501)
+..+.+.++ .+|++|.|.+.+.+ .++|+.. +++.++. .+||..+.|.-.++....
T Consensus 389 e~~~~l~~~--~~Dllig~s~~~~~A~k~gIP~------------ld~~~~~-~~p~~GY~G~~~l~~~I~ 444 (513)
T TIGR01861 389 EGLEAMEML--KPDIILTGKRPGEVSKKMRVPY------------LNAHAYH-NGPYKGFEGWVRFARDIY 444 (513)
T ss_pred HHHHHHHhc--CCCEEEecCccchhHhhcCCCE------------EEccCCC-CCCcchHhhHHHHHHHHH
Confidence 444444332 69999999887654 4466654 4444443 568777666655554433
No 70
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=51.64 E-value=65 Score=33.44 Aligned_cols=106 Identities=12% Similarity=0.061 Sum_probs=63.1
Q ss_pred CCCCcEEEEeCCc--cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 216 PLSNVRILDLTRI--IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 216 pL~GlrVldl~~~--~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
.|+|++|.=++.. -.......+|+-+|++|.-+-|+.. .+.... . .....+...+.++-.++=|
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~-~~~~~~----~---~~~~~~~~~~g~~~~~~~d------ 218 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQAC-WPEASL----V---AECSALAQKHGGKITLTED------ 218 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCccc-CCcHHH----H---HHHHHHHHHcCCeEEEEcC------
Confidence 5899999877753 2334557788999999998887642 110000 0 0000011112233333333
Q ss_pred HHHHHHHHhhCCeEEEcC-------Ch------hhhhhcCCCHHHHhhh-CCCcEEEEE
Q psy16437 294 QQIIKDLAKQCDVLVENF-------VP------GKLDRLNLGYKHLSEI-NSQLIYCSV 338 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~-------~p------g~l~~lGl~~~~L~~~-nP~lI~~~~ 338 (501)
+.+-+++||||.+.- .+ ..+..++++.+-|... +|+.|+.+.
T Consensus 219 ---~~~a~~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHc 274 (334)
T PRK12562 219 ---IAAGVKGADFIYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHC 274 (334)
T ss_pred ---HHHHhCCCCEEEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECC
Confidence 457788999999752 11 1345688998888875 799888764
No 71
>PRK08605 D-lactate dehydrogenase; Validated
Probab=50.72 E-value=67 Score=33.15 Aligned_cols=94 Identities=9% Similarity=0.231 Sum_probs=61.8
Q ss_pred CCCCCcEEEEeCCccchhHHHHHH-HHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLL-ADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~L-AdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
..|.|.+|.=++...-|-..++.| ..+|.+|+=..+ . .+. . +.. + + ..
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~-~-~~~---------------~-~~~---~---~--~~----- 190 (332)
T PRK08605 142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDP-F-PNA---------------K-AAT---Y---V--DY----- 190 (332)
T ss_pred ceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECC-C-ccH---------------h-HHh---h---c--cc-----
Confidence 369999999999876666667777 579999986653 2 100 0 000 0 0 00
Q ss_pred HHHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 294 QQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
..-+.+++++||+|+...+-....+-=++.+.+....|+.|++.++
T Consensus 191 ~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~s 236 (332)
T PRK08605 191 KDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCA 236 (332)
T ss_pred cCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECC
Confidence 1126789999999998775443333334667788889999998876
No 72
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=50.55 E-value=98 Score=33.08 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=24.0
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEe
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVE 249 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE 249 (501)
.-|.|.||+=++...-.-....+|.+||.+|+.+-
T Consensus 296 ~~L~Gkrv~i~~g~~~~~~~~~~l~elGmevv~~g 330 (421)
T cd01976 296 PRLEGKTVMLYVGGLRPRHYIGAYEDLGMEVVGTG 330 (421)
T ss_pred HHcCCCEEEEECCCCcHHHHHHHHHHCCCEEEEEE
Confidence 45999999965422111233469999999999753
No 73
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=50.03 E-value=80 Score=34.09 Aligned_cols=36 Identities=22% Similarity=0.109 Sum_probs=24.7
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
..|.|.||.=.+..--.-..+++|.++|.+|+.+-.
T Consensus 322 ~~L~Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~t 357 (456)
T TIGR01283 322 ERLKGKKAAIYTGGVKSWSLVSALQDLGMEVVATGT 357 (456)
T ss_pred HHcCCCEEEEEcCCchHHHHHHHHHHCCCEEEEEee
Confidence 358999996443321112357889999999998844
No 74
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.25 E-value=71 Score=32.68 Aligned_cols=76 Identities=20% Similarity=0.183 Sum_probs=53.1
Q ss_pred CCCCCcEEEEeCCc-cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTRI-IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~~-~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
-+|+|-+|+=++.. +-|--.+++|...||+|+-..+.. .
T Consensus 155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t-------------------~--------------------- 194 (301)
T PRK14194 155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS-------------------T--------------------- 194 (301)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC-------------------C---------------------
Confidence 47999999999884 666555667778899998875421 0
Q ss_pred HHHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 294 QQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
-+.++++.|||||....-.. -+ ..+- +.|+-|+++++
T Consensus 195 --~l~e~~~~ADIVIsavg~~~--~v--~~~~---ik~GaiVIDvg 231 (301)
T PRK14194 195 --DAKALCRQADIVVAAVGRPR--LI--DADW---LKPGAVVIDVG 231 (301)
T ss_pred --CHHHHHhcCCEEEEecCChh--cc--cHhh---ccCCcEEEEec
Confidence 26688999999997764221 11 1111 67999999886
No 75
>PRK06852 aldolase; Validated
Probab=48.46 E-value=9.1 Score=39.11 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=18.9
Q ss_pred hHHHHHHHHcCCcEEEEecCC
Q psy16437 232 PFCTMLLADLGAEVIKVEQPV 252 (501)
Q Consensus 232 p~a~~~LAdlGA~VIKVE~p~ 252 (501)
.+|+|+-++||||+||+..|.
T Consensus 191 a~aaRiaaELGADIVKv~y~~ 211 (304)
T PRK06852 191 AGAAGVAACLGADFVKVNYPK 211 (304)
T ss_pred HHHHHHHHHHcCCEEEecCCC
Confidence 488999999999999998773
No 76
>PLN02985 squalene monooxygenase
Probab=47.87 E-value=28 Score=38.27 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=29.5
Q ss_pred cEEEEeCCccchhHHHHHHHHcCCcEEEEecC
Q psy16437 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQP 251 (501)
Q Consensus 220 lrVldl~~~~agp~a~~~LAdlGA~VIKVE~p 251 (501)
..|+=++..++|..++..|+..|-+|+-||.-
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~ 75 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERD 75 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEECc
Confidence 36999999999999999999999999999963
No 77
>PLN03139 formate dehydrogenase; Provisional
Probab=47.66 E-value=79 Score=33.50 Aligned_cols=95 Identities=12% Similarity=0.145 Sum_probs=63.5
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.-|.|-+|.=++..--|-..++.|..||.+|+-+.+.. -+ . ..+... | ....
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~-~~-------~--------~~~~~~--g-------~~~~--- 246 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLK-MD-------P--------ELEKET--G-------AKFE--- 246 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCC-cc-------h--------hhHhhc--C-------ceec---
Confidence 46999999888876667677888899999998765421 00 0 001111 1 1111
Q ss_pred HHHHHHHhhCCeEEEcCC--hhhhhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 295 QIIKDLAKQCDVLVENFV--PGKLDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~--pg~l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
+-+.+|+++||||+.+.+ +.+ +.+ ++.+.|....|+-+++.++
T Consensus 247 ~~l~ell~~sDvV~l~lPlt~~T-~~l-i~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 247 EDLDAMLPKCDVVVINTPLTEKT-RGM-FNKERIAKMKKGVLIVNNA 291 (386)
T ss_pred CCHHHHHhhCCEEEEeCCCCHHH-HHH-hCHHHHhhCCCCeEEEECC
Confidence 127789999999998776 332 222 5788999999999988865
No 78
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=46.89 E-value=1e+02 Score=31.40 Aligned_cols=107 Identities=11% Similarity=0.067 Sum_probs=61.8
Q ss_pred CCCCCcEEEEeCCccc-hhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTRIIA-GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~~~a-gp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
+.|+|++|.=++..-. .-....+|+.+|++|.-+-|+.. ++.... . ..-.-+..-+.++-.+.=|
T Consensus 144 g~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~-~~~~~~----~---~~~~~~~~~~g~~~~~~~d------ 209 (304)
T TIGR00658 144 GKLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGY-EPDADI----V---KKAQEIAKENGGSVELTHD------ 209 (304)
T ss_pred CCCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchh-cCCHHH----H---HHHHHHHHHcCCeEEEEcC------
Confidence 3599999986555311 13446789999999999987652 110000 0 0000011112233333333
Q ss_pred HHHHHHHHhhCCeEEEcC----C-----h---hhhhhcCCCHHHHhhhCCCcEEEEE
Q psy16437 294 QQIIKDLAKQCDVLVENF----V-----P---GKLDRLNLGYKHLSEINSQLIYCSV 338 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~----~-----p---g~l~~lGl~~~~L~~~nP~lI~~~~ 338 (501)
+.+.+++||||...- . + .....++++.+-|...+|+.|+.+-
T Consensus 210 ---~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp 263 (304)
T TIGR00658 210 ---PVEAVKGADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC 263 (304)
T ss_pred ---HHHHhCCCCEEEEcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC
Confidence 457888999999742 1 1 1345678888888888888777653
No 79
>PLN02306 hydroxypyruvate reductase
Probab=46.84 E-value=75 Score=33.66 Aligned_cols=125 Identities=11% Similarity=0.156 Sum_probs=73.5
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHH-HcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhh--hhcCCceEEEEeCCCh
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLA-DLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFT--CVNRNKKSVCVDFKTP 291 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LA-dlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~--~~nrgKrsv~lDl~~~ 291 (501)
..|.|-+|.=++..--|-..+++|. -||++|+=+.+.. .+..... . ..+. ....+-.. ++.+.
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~-~~~~~~~----~------~~~~~~l~~~~~~~--~~~~~- 226 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-STRLEKF----V------TAYGQFLKANGEQP--VTWKR- 226 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCC-chhhhhh----h------hhhccccccccccc--ccccc-
Confidence 3599999999999877888888885 9999999887532 1100000 0 0000 00000000 01110
Q ss_pred hhHHHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEeecCCCCCCCCCCcchhHHhhh-hc
Q psy16437 292 EGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFGSKGPYKDRPGYDIIAASI-GG 362 (501)
Q Consensus 292 ~g~~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~fG~~Gp~~~~~g~d~~~~A~-sG 362 (501)
..-|.+|+++||||+...+=..--+==++.+.|....|+-+++.++ .|+- .-.+.+++|. +|
T Consensus 227 --~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~a----RG~l---VDe~AL~~AL~sg 289 (386)
T PLN02306 227 --ASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNAS----RGPV---IDEVALVEHLKAN 289 (386)
T ss_pred --cCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECC----Cccc---cCHHHHHHHHHhC
Confidence 1238899999999986644211112226889999999999999987 3332 2355566664 44
No 80
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=46.74 E-value=91 Score=32.33 Aligned_cols=107 Identities=12% Similarity=0.077 Sum_probs=61.9
Q ss_pred CCCCCcEEEEeCCc--cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChh
Q psy16437 215 LPLSNVRILDLTRI--IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPE 292 (501)
Q Consensus 215 ~pL~GlrVldl~~~--~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~ 292 (501)
+.|+|++|.=++.. -..-.-..+|+-+|++|.-+-|+.. .+.... . ....-+.....++-.+.=|
T Consensus 151 g~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~-~~~~~~----~---~~~~~~~~~~g~~~~~~~d----- 217 (332)
T PRK04284 151 KPYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKEL-NPDDEL----L---NKCKEIAAETGGKITITDD----- 217 (332)
T ss_pred CCcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccc-cCCHHH----H---HHHHHHHHHcCCeEEEEcC-----
Confidence 45999999877764 1223446788999999999987652 110000 0 0000111112233333333
Q ss_pred hHHHHHHHHhhCCeEEEcC-------------ChhhhhhcCCCHHHHhhhC-CCcEEEEE
Q psy16437 293 GQQIIKDLAKQCDVLVENF-------------VPGKLDRLNLGYKHLSEIN-SQLIYCSV 338 (501)
Q Consensus 293 g~~~~~~Li~~ADVvi~n~-------------~pg~l~~lGl~~~~L~~~n-P~lI~~~~ 338 (501)
+.+.+++||||...- +-.....++++.+-|...+ |+.|+.+-
T Consensus 218 ----~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp 273 (332)
T PRK04284 218 ----IDEGVKGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC 273 (332)
T ss_pred ----HHHHhCCCCEEEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC
Confidence 457789999999851 1123456788888877664 68777653
No 81
>KOG1270|consensus
Probab=46.38 E-value=16 Score=36.56 Aligned_cols=34 Identities=35% Similarity=0.536 Sum_probs=30.9
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
.||.|.+|||++- .|.+.+.-||.+||.|+=|+.
T Consensus 86 k~~~g~~ilDvGC--GgGLLSepLArlga~V~GID~ 119 (282)
T KOG1270|consen 86 KPLLGMKILDVGC--GGGLLSEPLARLGAQVTGIDA 119 (282)
T ss_pred cccCCceEEEecc--CccccchhhHhhCCeeEeecc
Confidence 6999999999998 467999999999999999985
No 82
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=46.26 E-value=1.3e+02 Score=32.25 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=60.0
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
..|.|-+|+=++...-|=.+++.|..+||+||-+|. |+.|.. +. ..-|=.. .+
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~----d~~R~~-------------~A-~~~G~~~--~~------- 250 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEV----DPICAL-------------QA-AMEGYEV--MT------- 250 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC----ChhhHH-------------HH-HhcCCEE--cc-------
Confidence 358999999999988888999999999999999874 233321 00 0011111 11
Q ss_pred HHHHHHHhhCCeEEEcCC-hhhhhhcCCCHHHHhhhCCCcEEEEEee
Q psy16437 295 QIIKDLAKQCDVLVENFV-PGKLDRLNLGYKHLSEINSQLIYCSVTG 340 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~-pg~l~~lGl~~~~L~~~nP~lI~~~~s~ 340 (501)
+.+.++.+||||+.-- +.. ++.+.+....|+-+++.+.-
T Consensus 251 --~~e~v~~aDVVI~atG~~~~-----i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 251 --MEEAVKEGDIFVTTTGNKDI-----ITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred --HHHHHcCCCEEEECCCCHHH-----HHHHHHhcCCCCcEEEEeCC
Confidence 1245678999998642 222 23345777788888877753
No 83
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=46.24 E-value=99 Score=32.70 Aligned_cols=92 Identities=16% Similarity=0.189 Sum_probs=65.2
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
..|.|.+|-=++..--|-..++.|..||.+|+-..++. .+. +. ... .
T Consensus 112 ~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~-~~~-----------------------~~---~~~------~ 158 (378)
T PRK15438 112 FSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPR-ADR-----------------------GD---EGD------F 158 (378)
T ss_pred CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcc-ccc-----------------------cc---ccc------c
Confidence 46999999999998778888999999999999887532 100 00 000 1
Q ss_pred HHHHHHHhhCCeEEEcCC--h-hhhhhcC-CCHHHHhhhCCCcEEEEEe
Q psy16437 295 QIIKDLAKQCDVLVENFV--P-GKLDRLN-LGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~--p-g~l~~lG-l~~~~L~~~nP~lI~~~~s 339 (501)
.-|.+|+++||||+-..+ + +.-+-.| ++.+.|....|+-|++.++
T Consensus 159 ~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~a 207 (378)
T PRK15438 159 RSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINAC 207 (378)
T ss_pred CCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECC
Confidence 127889999999994443 3 2222333 5789999999999998875
No 84
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.19 E-value=68 Score=30.72 Aligned_cols=86 Identities=17% Similarity=0.243 Sum_probs=56.4
Q ss_pred CCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHH
Q psy16437 217 LSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQI 296 (501)
Q Consensus 217 L~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~ 296 (501)
.++-+||=++.++-|-+.+++|+. ++=|-|-.+. -.+|..-|+. .-|... ++-+.|
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~--p~~r~~lp~~-------v~Fr~~----------~~~~~G--- 98 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIH--PFMRGFLPNN-------VKFRNL----------LKFIRG--- 98 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc--cceEEEecCC--HHHHhcCCCC-------ccHhhh----------cCCCCC---
Confidence 567789999999999999999988 4444443333 2355543322 123222 333444
Q ss_pred HHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEE
Q psy16437 297 IKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCS 337 (501)
Q Consensus 297 ~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~ 337 (501)
..|++|+---=| |+.++.|+..||....|.
T Consensus 99 ------~~DlivDlTGlG-----G~~Pe~L~~fnp~vfiVE 128 (254)
T COG4017 99 ------EVDLIVDLTGLG-----GIEPEFLAKFNPKVFIVE 128 (254)
T ss_pred ------ceeEEEeccccC-----CCCHHHHhccCCceEEEE
Confidence 457777544434 788999999999987765
No 85
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=45.99 E-value=1e+02 Score=30.03 Aligned_cols=84 Identities=17% Similarity=0.112 Sum_probs=51.5
Q ss_pred CCCCCcEEEEeCCc---cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCCh
Q psy16437 215 LPLSNVRILDLTRI---IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTP 291 (501)
Q Consensus 215 ~pL~GlrVldl~~~---~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~ 291 (501)
..|+|-.||=.+.. -=|-..++.|++.|+.|+-+..-. +..... .......+ ....+.+|+.++
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~--~~~~~~----------~~~~~~~~-~~~~~~~D~~~~ 72 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND--KARPYV----------EPLAEELD-APIFLPLDVREP 72 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh--hhHHHH----------HHHHHhhc-cceEEecCcCCH
Confidence 45788777776632 236788899999999998875311 100000 00111111 234678999999
Q ss_pred hhHHHHHHHHh----hCCeEEEcC
Q psy16437 292 EGQQIIKDLAK----QCDVLVENF 311 (501)
Q Consensus 292 ~g~~~~~~Li~----~ADVvi~n~ 311 (501)
+..+.+.+-+. .-|++|.|-
T Consensus 73 ~~v~~~~~~~~~~~g~ld~lv~nA 96 (258)
T PRK07533 73 GQLEAVFARIAEEWGRLDFLLHSI 96 (258)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEcC
Confidence 98866555543 369999885
No 86
>PLN02527 aspartate carbamoyltransferase
Probab=45.48 E-value=1.5e+02 Score=30.35 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=61.0
Q ss_pred CCCCCcEEEEeCCccc---hhHHHHHHHHc-CCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCC
Q psy16437 215 LPLSNVRILDLTRIIA---GPFCTMLLADL-GAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKT 290 (501)
Q Consensus 215 ~pL~GlrVldl~~~~a---gp~a~~~LAdl-GA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~ 290 (501)
+.|+|++|.=++...- .-.....|+-+ |++|.-+-|+.+-.+ . .-.-+..-+.++-.++=|
T Consensus 147 g~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~------~------~~~~~~~~~g~~~~~~~d--- 211 (306)
T PLN02527 147 GRLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMK------D------DIKDYLTSKGVEWEESSD--- 211 (306)
T ss_pred CCcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCC------H------HHHHHHHHcCCEEEEEcC---
Confidence 4599999998886522 33445566776 999988887653110 0 000011112222233333
Q ss_pred hhhHHHHHHHHhhCCeEEEcCCh--------hhh----hhcCCCHHHHhhhCCCcEEEEE
Q psy16437 291 PEGQQIIKDLAKQCDVLVENFVP--------GKL----DRLNLGYKHLSEINSQLIYCSV 338 (501)
Q Consensus 291 ~~g~~~~~~Li~~ADVvi~n~~p--------g~l----~~lGl~~~~L~~~nP~lI~~~~ 338 (501)
+.+-+++||||....-. ... ..+.++.+-|...+|+.|+.+-
T Consensus 212 ------~~~a~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc 265 (306)
T PLN02527 212 ------LMEVASKCDVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP 265 (306)
T ss_pred ------HHHHhCCCCEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence 45788999999985421 001 3478888888888898887743
No 87
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=45.23 E-value=1e+02 Score=32.55 Aligned_cols=92 Identities=18% Similarity=0.198 Sum_probs=63.7
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
..|.|-+|-=++..--|-..++.|..+|.+|+-..++... . . . + ...
T Consensus 112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~-~------------~-~--------~-----~~~------ 158 (381)
T PRK00257 112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQE-A------------E-G--------D-----GDF------ 158 (381)
T ss_pred CCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccc-c------------c-c--------C-----ccc------
Confidence 4699999988888766777788899999999988754310 0 0 0 0 001
Q ss_pred HHHHHHHhhCCeEEEcCChhh----hhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 295 QIIKDLAKQCDVLVENFVPGK----LDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~----l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
.-+.+|+++||||+...+-.. -.+-=++.+.|....|+-|++.++
T Consensus 159 ~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~a 207 (381)
T PRK00257 159 VSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINAS 207 (381)
T ss_pred cCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECC
Confidence 127789999999996654211 011225889999999999998875
No 88
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=45.18 E-value=81 Score=34.81 Aligned_cols=93 Identities=13% Similarity=0.101 Sum_probs=63.5
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
-|.|-+|.=++..--|-..++.|..+|.+|+-+.+.. +..+ .... |=+.+
T Consensus 137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~--~~~~---------------~~~~--g~~~~----------- 186 (526)
T PRK13581 137 ELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI--SPER---------------AAQL--GVELV----------- 186 (526)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC--ChhH---------------HHhc--CCEEE-----------
Confidence 5899999988887777778888999999999886421 1100 0111 11111
Q ss_pred HHHHHHhhCCeEEEcCChhh-hhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 296 IIKDLAKQCDVLVENFVPGK-LDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 296 ~~~~Li~~ADVvi~n~~pg~-l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
-+.+|++.||+|+...+-.. -..+ ++.+.|....|+-+++.++
T Consensus 187 ~l~ell~~aDiV~l~lP~t~~t~~l-i~~~~l~~mk~ga~lIN~a 230 (526)
T PRK13581 187 SLDELLARADFITLHTPLTPETRGL-IGAEELAKMKPGVRIINCA 230 (526)
T ss_pred cHHHHHhhCCEEEEccCCChHhhcC-cCHHHHhcCCCCeEEEECC
Confidence 16789999999997765322 2222 5688899999999998874
No 89
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=44.88 E-value=22 Score=36.34 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=18.0
Q ss_pred CCChHHHHHh--hcCCChHHHHHHhhhchh
Q psy16437 112 GEHTDYVLKD--LLNYDETTIAKLKEKKIL 139 (501)
Q Consensus 112 Geht~eVL~e--llG~s~~ei~~L~~~Gvv 139 (501)
+++|.+|... -=.++.++|++|+++|+-
T Consensus 93 ~~dNr~i~D~~~~QkLt~eeIe~LK~~g~s 122 (299)
T PF04189_consen 93 SRDNRNIIDDNSSQKLTQEEIEELKKEGVS 122 (299)
T ss_pred cccccccccccccccCCHHHHHHHHHcCCC
Confidence 4455544321 125788999999999754
No 90
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=44.71 E-value=77 Score=32.96 Aligned_cols=104 Identities=8% Similarity=0.124 Sum_probs=61.7
Q ss_pred CCCCcEEEEeCCcc-chhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhh----hcCCceEEEEeCCC
Q psy16437 216 PLSNVRILDLTRII-AGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTC----VNRNKKSVCVDFKT 290 (501)
Q Consensus 216 pL~GlrVldl~~~~-agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~----~nrgKrsv~lDl~~ 290 (501)
.|+|++|.=++..- .......+|+-+|++|.-+-|+..- ++. .-.-+.. .+.++-.+.=|
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~-------~~~-----~~~~~~~~~~~~~g~~~~~~~d--- 215 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQ-------LPE-----EHLAIAEENCEVSGGSVLVTDD--- 215 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccc-------cCH-----HHHHHHHHHHHhcCCeEEEEcC---
Confidence 49999999777631 2234477889999999999876521 110 0000111 12233333322
Q ss_pred hhhHHHHHHHHhhCCeEEEc-----CCh-----hhhh----hcCCCHHHHhhhCCCcEEEEEee
Q psy16437 291 PEGQQIIKDLAKQCDVLVEN-----FVP-----GKLD----RLNLGYKHLSEINSQLIYCSVTG 340 (501)
Q Consensus 291 ~~g~~~~~~Li~~ADVvi~n-----~~p-----g~l~----~lGl~~~~L~~~nP~lI~~~~s~ 340 (501)
+.+.+++||||... +.. ..++ .++++.+-|...+|+.|+.+--+
T Consensus 216 ------~~eav~~aDvvy~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP 273 (338)
T PRK02255 216 ------VDEAVKDADFVYTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLP 273 (338)
T ss_pred ------HHHHhCCCCEEEEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCC
Confidence 45788999999972 221 1122 37888888888888877765433
No 91
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=44.32 E-value=78 Score=33.69 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=47.7
Q ss_pred CCCCCcEEEE-eCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILD-LTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVld-l~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
.|++.||+|. .|+..-|-..++.|+..||+|+-|..+. + .. ++ . ....+|+++.+.
T Consensus 200 E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~--~-~~---~~--------~---------~~~~~dv~~~~~ 256 (399)
T PRK05579 200 EPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPV--N-LP---TP--------A---------GVKRIDVESAQE 256 (399)
T ss_pred ccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCc--c-cc---CC--------C---------CcEEEccCCHHH
Confidence 4666666664 2334457888999999999999997543 1 00 00 0 013678888776
Q ss_pred H-HHHHHHHhhCCeEEEcCC
Q psy16437 294 Q-QIIKDLAKQCDVLVENFV 312 (501)
Q Consensus 294 ~-~~~~~Li~~ADVvi~n~~ 312 (501)
. +.+.+.+...|+||.|--
T Consensus 257 ~~~~v~~~~~~~DilI~~Aa 276 (399)
T PRK05579 257 MLDAVLAALPQADIFIMAAA 276 (399)
T ss_pred HHHHHHHhcCCCCEEEEccc
Confidence 4 334444567899998753
No 92
>KOG2775|consensus
Probab=43.93 E-value=9.3 Score=38.65 Aligned_cols=11 Identities=9% Similarity=0.483 Sum_probs=6.5
Q ss_pred CcEEEEeCCcc
Q psy16437 219 NVRILDLTRII 229 (501)
Q Consensus 219 GlrVldl~~~~ 229 (501)
|+..+|++..+
T Consensus 109 Gmtm~ei~e~i 119 (397)
T KOG2775|consen 109 GMTMIEICETI 119 (397)
T ss_pred cccHHHHHHHH
Confidence 66666665544
No 93
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=43.70 E-value=88 Score=32.81 Aligned_cols=80 Identities=23% Similarity=0.282 Sum_probs=46.8
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
.|.|.||+=.+...-.-..+++|.++|.+|+.|-... ..++..+
T Consensus 268 ~l~g~~v~i~~~~~~~~~l~~~L~elG~~v~~v~~~~------------------------------------~~~~~~e 311 (398)
T PF00148_consen 268 RLGGKRVAIYGDPDRALGLARFLEELGMEVVAVGCDD------------------------------------KSPEDEE 311 (398)
T ss_dssp HHTT-EEEEESSHHHHHHHHHHHHHTT-EEEEEEESS------------------------------------GGHHHHH
T ss_pred hhcCceEEEEcCchhHHHHHHHHHHcCCeEEEEEEcc------------------------------------CchhHHH
Confidence 4778888755554333455788889999999997543 1122334
Q ss_pred HHHHHHhhCC-eEEEcCChhhhhhcCCCHHHHhhhCCCcEEEE
Q psy16437 296 IIKDLAKQCD-VLVENFVPGKLDRLNLGYKHLSEINSQLIYCS 337 (501)
Q Consensus 296 ~~~~Li~~AD-Vvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~ 337 (501)
.+..++...| .|+.+..+..++ +.+++.+|+|++.+
T Consensus 312 ~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~~pdl~ig~ 348 (398)
T PF00148_consen 312 RLRWLLEESDPEVIIDPDPEEIE------ELLEELKPDLLIGS 348 (398)
T ss_dssp HHHHHHHTTCSEEEESCBHHHHH------HHHHHHT-SEEEES
T ss_pred HHHHHhhCCCcEEEeCCCHHHHH------HHHHhcCCCEEEec
Confidence 5666666663 555555554433 34566677777643
No 94
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.68 E-value=1.1e+02 Score=29.85 Aligned_cols=84 Identities=15% Similarity=0.032 Sum_probs=49.8
Q ss_pred CCCCcEEEEeCC---ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChh
Q psy16437 216 PLSNVRILDLTR---IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPE 292 (501)
Q Consensus 216 pL~GlrVldl~~---~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~ 292 (501)
.|+|-+||=.+. .-=|-..++.|+..|+.||-+......+... ..-......-..+.+|+.+++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~-------------~~~~~~~~~~~~~~~Dv~~~~ 70 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTE-------------RIAKRLPEPAPVLELDVTNEE 70 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHH-------------HHHHhcCCCCcEEeCCCCCHH
Confidence 467767776663 2236677899999999998764311011000 011111112346889999998
Q ss_pred hHHHHHHHH----hhCCeEEEcCC
Q psy16437 293 GQQIIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 293 g~~~~~~Li----~~ADVvi~n~~ 312 (501)
..+.+.+-+ ..-|+||.|--
T Consensus 71 ~i~~~~~~~~~~~g~iD~li~nAG 94 (256)
T PRK07889 71 HLASLADRVREHVDGLDGVVHSIG 94 (256)
T ss_pred HHHHHHHHHHHHcCCCcEEEEccc
Confidence 865554433 34799998863
No 95
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=43.58 E-value=99 Score=31.18 Aligned_cols=88 Identities=13% Similarity=-0.018 Sum_probs=51.6
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCc-EEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAE-VIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~-VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.++|-+||=++..-+|-.+...|+++|+. |+-+.... ....|.. .....+............|+.++
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~-~~~~~a~--------~l~~~l~~~~~~~~~~~~d~~~~--- 190 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD-DFYERAE--------QTAEKIKQEVPECIVNVYDLNDT--- 190 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc-hHHHHHH--------HHHHHHhhcCCCceeEEechhhh---
Confidence 47788999999988888888899999998 55554311 0001110 00000111111122344676543
Q ss_pred HHHHHHHhhCCeEEEcCChhh
Q psy16437 295 QIIKDLAKQCDVLVENFVPGK 315 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~ 315 (501)
+.+.+.++.+|+||.|-..|.
T Consensus 191 ~~~~~~~~~~DilINaTp~Gm 211 (289)
T PRK12548 191 EKLKAEIASSDILVNATLVGM 211 (289)
T ss_pred hHHHhhhccCCEEEEeCCCCC
Confidence 345677888999998877664
No 96
>PRK06841 short chain dehydrogenase; Provisional
Probab=43.51 E-value=1.4e+02 Score=28.55 Aligned_cols=82 Identities=18% Similarity=0.113 Sum_probs=50.8
Q ss_pred CCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcC-CceEEEEeCCChhh
Q psy16437 216 PLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR-NKKSVCVDFKTPEG 293 (501)
Q Consensus 216 pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nr-gKrsv~lDl~~~~g 293 (501)
.|.|-+||=.+. .--|-..++.|++.|++||-+.... +.. ......+. .-..+.+|+.+++.
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~--~~~--------------~~~~~~~~~~~~~~~~Dl~~~~~ 75 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSE--DVA--------------EVAAQLLGGNAKGLVCDVSDSQS 75 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHH--------------HHHHHhhCCceEEEEecCCCHHH
Confidence 477777776653 2336677888999999999876421 100 00111111 12367899999988
Q ss_pred HHHHHHHH----hhCCeEEEcCCh
Q psy16437 294 QQIIKDLA----KQCDVLVENFVP 313 (501)
Q Consensus 294 ~~~~~~Li----~~ADVvi~n~~p 313 (501)
.+.+.+-+ ...|+||+|--.
T Consensus 76 ~~~~~~~~~~~~~~~d~vi~~ag~ 99 (255)
T PRK06841 76 VEAAVAAVISAFGRIDILVNSAGV 99 (255)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 75544433 247999998753
No 97
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=43.20 E-value=1.2e+02 Score=32.59 Aligned_cols=102 Identities=13% Similarity=0.054 Sum_probs=60.4
Q ss_pred CCCCcEEEEeCCc---cchhHHHHHHHHc-CCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCCh
Q psy16437 216 PLSNVRILDLTRI---IAGPFCTMLLADL-GAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTP 291 (501)
Q Consensus 216 pL~GlrVldl~~~---~agp~a~~~LAdl-GA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~ 291 (501)
.|+|++|+=++.. -..-....+|+-+ |++|+-+-|+..- + + ..-.-+...+.++-.++=|
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~-~------~-----~~~~~~~~~~G~~v~~~~d---- 301 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLE-M------P-----AYIVEQISRNGHVIEQTDD---- 301 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccc-c------C-----HHHHHHHHhcCCeEEEEcC----
Confidence 5999999987774 2233445566776 9999998876521 0 0 0001111122222222222
Q ss_pred hhHHHHHHHHhhCCeEEEcC------Ch----hhhhhcCCCHHHHhh-hCCCcEEEEE
Q psy16437 292 EGQQIIKDLAKQCDVLVENF------VP----GKLDRLNLGYKHLSE-INSQLIYCSV 338 (501)
Q Consensus 292 ~g~~~~~~Li~~ADVvi~n~------~p----g~l~~lGl~~~~L~~-~nP~lI~~~~ 338 (501)
+.+-+++||||.... .. .....+.++.+-|.. .+|+.|+.+.
T Consensus 302 -----~~eav~~ADVVYt~~~q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHc 354 (429)
T PRK11891 302 -----LAAGLRGADVVYATRIQKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHP 354 (429)
T ss_pred -----HHHHhCCCCEEEEcCchhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECC
Confidence 557789999999632 11 123457888888877 7898887754
No 98
>PRK05717 oxidoreductase; Validated
Probab=43.06 E-value=1.5e+02 Score=28.39 Aligned_cols=83 Identities=14% Similarity=0.033 Sum_probs=52.1
Q ss_pred CCCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
..|+|-+||=.+. .--|-..++.|++.|++|+-+.... +.. ...-...+..-..+.+|+.+++.
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~--~~~-------------~~~~~~~~~~~~~~~~Dl~~~~~ 70 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR--ERG-------------SKVAKALGENAWFIAMDVADEAQ 70 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH--HHH-------------HHHHHHcCCceEEEEccCCCHHH
Confidence 5688888887664 2336778899999999999885321 000 00001112223467899999987
Q ss_pred HHH-HHHHHh---hCCeEEEcCC
Q psy16437 294 QQI-IKDLAK---QCDVLVENFV 312 (501)
Q Consensus 294 ~~~-~~~Li~---~ADVvi~n~~ 312 (501)
.+. +.++.+ ..|+||+|.-
T Consensus 71 ~~~~~~~~~~~~g~id~li~~ag 93 (255)
T PRK05717 71 VAAGVAEVLGQFGRLDALVCNAA 93 (255)
T ss_pred HHHHHHHHHHHhCCCCEEEECCC
Confidence 644 344443 3699999864
No 99
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=43.04 E-value=94 Score=32.10 Aligned_cols=110 Identities=17% Similarity=0.197 Sum_probs=73.1
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
-|.|-+|-=++..-=|-..++.|..||..||=..+-. +.. .. ..+. -.+.+
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~-~~~---~~--------------~~~~-----------~~~~~ 189 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYS-PRE---RA--------------GVDG-----------VVGVD 189 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCC-chh---hh--------------cccc-----------ceecc
Confidence 5889999988888778899999999999999998621 100 00 0000 01223
Q ss_pred HHHHHHhhCCeEEEcCChhhhhhcC-CCHHHHhhhCCCcEEEEEeecCCCCCCCCCCcchhHHhhh-hc
Q psy16437 296 IIKDLAKQCDVLVENFVPGKLDRLN-LGYKHLSEINSQLIYCSVTGFGSKGPYKDRPGYDIIAASI-GG 362 (501)
Q Consensus 296 ~~~~Li~~ADVvi~n~~pg~l~~lG-l~~~~L~~~nP~lI~~~~s~fG~~Gp~~~~~g~d~~~~A~-sG 362 (501)
-|.+|+++||||+.-. |-+=+--| |+.+.|....|+-|++..+ - |+- .-.+.++.|. +|
T Consensus 190 ~Ld~lL~~sDiv~lh~-PlT~eT~g~i~~~~~a~MK~gailIN~a-R---G~v---Vde~aL~~AL~~G 250 (324)
T COG0111 190 SLDELLAEADILTLHL-PLTPETRGLINAEELAKMKPGAILINAA-R---GGV---VDEDALLAALDSG 250 (324)
T ss_pred cHHHHHhhCCEEEEcC-CCCcchhcccCHHHHhhCCCCeEEEECC-C---cce---ecHHHHHHHHHcC
Confidence 4789999999998444 33333444 5899999999999887753 2 332 2255666654 55
No 100
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=42.87 E-value=19 Score=37.43 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.7
Q ss_pred hHHHHHHHH--cCCcEEEEecCC
Q psy16437 232 PFCTMLLAD--LGAEVIKVEQPV 252 (501)
Q Consensus 232 p~a~~~LAd--lGA~VIKVE~p~ 252 (501)
-.+.+.+++ +||||+|||.|.
T Consensus 187 ~~a~r~~~~~elGaDvlKve~p~ 209 (340)
T PRK12858 187 IKTMEEFSKPRYGVDVLKVEVPV 209 (340)
T ss_pred HHHHHHHhhhccCCeEEEeeCCC
Confidence 478999996 999999999985
No 101
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=42.45 E-value=1e+02 Score=31.98 Aligned_cols=108 Identities=17% Similarity=0.155 Sum_probs=62.4
Q ss_pred CCCCcEEEEeCCccc--hhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 216 PLSNVRILDLTRIIA--GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 216 pL~GlrVldl~~~~a--gp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
.|+|++|.=++...- .-.-..+|+-+|++|.-+-|+.. . |+..- .....-+...+.++-.+.=|
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~-~------p~~~~-~~~~~~~~~~~g~~~~~~~d------ 218 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKAL-L------PEASL-VEMCEKFAKESGARITVTDD------ 218 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchh-c------CCHHH-HHHHHHHHHHcCCeEEEEcC------
Confidence 599999987776411 23346788999999997776542 1 10000 00000111122333333333
Q ss_pred HHHHHHHHhhCCeEEEcC----Ch---------hhhhhcCCCHHHHhhh-CCCcEEEEEee
Q psy16437 294 QQIIKDLAKQCDVLVENF----VP---------GKLDRLNLGYKHLSEI-NSQLIYCSVTG 340 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~----~p---------g~l~~lGl~~~~L~~~-nP~lI~~~~s~ 340 (501)
+.+.+++||||...- .. .....++++.+-|... +|+.|+.+--+
T Consensus 219 ---~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~lP 276 (334)
T PRK01713 219 ---IDKAVKGVDFVHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCLP 276 (334)
T ss_pred ---HHHHhCCCCEEEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCCC
Confidence 567889999999741 11 1345678888888765 79888875433
No 102
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=41.66 E-value=57 Score=36.86 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=33.4
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCC
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPV 252 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~ 252 (501)
+-.|-+|+=++...||=.++..|+.+|.+|+-+|...
T Consensus 307 ~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 307 VPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred cCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4469999999999999999999999999999999643
No 103
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=41.13 E-value=1.2e+02 Score=26.82 Aligned_cols=99 Identities=17% Similarity=0.226 Sum_probs=57.4
Q ss_pred CCCcEEEEeCCccchhHHHHHHHHcC-CcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 217 LSNVRILDLTRIIAGPFCTMLLADLG-AEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 217 L~GlrVldl~~~~agp~a~~~LAdlG-A~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
+.+-+|+=++....|....+.|+..| .+|+-+.. . .+..+. +.. .-+.+.+..+..+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r-~-~~~~~~--------------~~~-~~~~~~~~~~~~~----- 74 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR-T-LEKAKA--------------LAE-RFGELGIAIAYLD----- 74 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC-C-HHHHHH--------------HHH-HHhhcccceeecc-----
Confidence 66788998888777778888888997 55655543 2 111111 111 0011112223222
Q ss_pred HHHHHHhhCCeEEEcCChhhh--hhcCCCHHHHhhhCCCcEEEEEeec
Q psy16437 296 IIKDLAKQCDVLVENFVPGKL--DRLNLGYKHLSEINSQLIYCSVTGF 341 (501)
Q Consensus 296 ~~~~Li~~ADVvi~n~~pg~l--~~lGl~~~~L~~~nP~lI~~~~s~f 341 (501)
..+++..+||||.+..++.. +..-+... .+.|+-++++++-.
T Consensus 75 -~~~~~~~~Dvvi~~~~~~~~~~~~~~~~~~---~~~~~~~v~D~~~~ 118 (155)
T cd01065 75 -LEELLAEADLIINTTPVGMKPGDELPLPPS---LLKPGGVVYDVVYN 118 (155)
T ss_pred -hhhccccCCEEEeCcCCCCCCCCCCCCCHH---HcCCCCEEEEcCcC
Confidence 23447899999999988764 33323322 34688888888544
No 104
>PRK08177 short chain dehydrogenase; Provisional
Probab=41.04 E-value=1.1e+02 Score=28.87 Aligned_cols=66 Identities=14% Similarity=0.046 Sum_probs=42.8
Q ss_pred chhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHHHHHh--hCCeE
Q psy16437 230 AGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIKDLAK--QCDVL 307 (501)
Q Consensus 230 agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~~Li~--~ADVv 307 (501)
-|...++.|+..|++|+-+.... +... .. .. ..+...+.+|+.+++..+.+.+.+. ..|+|
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~--~~~~-------------~~-~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~v 75 (225)
T PRK08177 13 LGLGLVDRLLERGWQVTATVRGP--QQDT-------------AL-QA-LPGVHIEKLDMNDPASLDQLLQRLQGQRFDLL 75 (225)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCC--cchH-------------HH-Hh-ccccceEEcCCCCHHHHHHHHHHhhcCCCCEE
Confidence 36677899999999999887532 1100 00 01 1244567789999887655555553 58999
Q ss_pred EEcCC
Q psy16437 308 VENFV 312 (501)
Q Consensus 308 i~n~~ 312 (501)
|+|-.
T Consensus 76 i~~ag 80 (225)
T PRK08177 76 FVNAG 80 (225)
T ss_pred EEcCc
Confidence 98863
No 105
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=40.07 E-value=1.3e+02 Score=31.31 Aligned_cols=108 Identities=12% Similarity=0.043 Sum_probs=63.2
Q ss_pred CCCCcEEEEeCCc--cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 216 PLSNVRILDLTRI--IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 216 pL~GlrVldl~~~--~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
.|+|++|.=++.. -..-..-.+|+-+|++|+-+-|+.. .+.... . ....-+...+.++-.+.-|
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~-~~~~~~----~---~~~~~~~~~~g~~i~~~~d------ 218 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKAC-WPEAAL----V---TECRALAQKNGGNITLTED------ 218 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchh-cCcHHH----H---HHHHHHHHHcCCeEEEEcC------
Confidence 5999999877763 1234456788999999999987652 110000 0 0000011112233333333
Q ss_pred HHHHHHHHhhCCeEEEc----C----C---h--hhhhhcCCCHHHHhhh-CCCcEEEEEee
Q psy16437 294 QQIIKDLAKQCDVLVEN----F----V---P--GKLDRLNLGYKHLSEI-NSQLIYCSVTG 340 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n----~----~---p--g~l~~lGl~~~~L~~~-nP~lI~~~~s~ 340 (501)
+.+.+++||||... + + . ..+..++++.+-+... +|+.|+.+.-+
T Consensus 219 ---~~ea~~~aDvvytd~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcLP 276 (336)
T PRK03515 219 ---IAEGVKGADFIYTDVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCLP 276 (336)
T ss_pred ---HHHHhCCCCEEEecCcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCCC
Confidence 56788999999975 1 1 1 2445678887877764 68887776543
No 106
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=39.95 E-value=1.7e+02 Score=29.82 Aligned_cols=78 Identities=13% Similarity=0.201 Sum_probs=49.1
Q ss_pred CCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhh--cCCceEEEEeCCChhh
Q psy16437 217 LSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCV--NRNKKSVCVDFKTPEG 293 (501)
Q Consensus 217 L~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~--nrgKrsv~lDl~~~~g 293 (501)
+.|-+||=.+. ..-|...++.|.+.|.+|+=+..-. . .. ......+ ...-+.+..|+++++.
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~-~-~~-------------~~~~~~~~~~~~~~~~~~Dl~~~~~ 66 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDP-P-TS-------------PNLFELLNLAKKIEDHFGDIRDAAK 66 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCC-c-cc-------------hhHHHHHhhcCCceEEEccCCCHHH
Confidence 45667777774 5568888999999999998764311 0 00 0011111 1223457889987765
Q ss_pred HHHHHHHHhh--CCeEEEcCC
Q psy16437 294 QQIIKDLAKQ--CDVLVENFV 312 (501)
Q Consensus 294 ~~~~~~Li~~--ADVvi~n~~ 312 (501)
+.++++. .|+||++-.
T Consensus 67 ---~~~~~~~~~~d~vih~A~ 84 (349)
T TIGR02622 67 ---LRKAIAEFKPEIVFHLAA 84 (349)
T ss_pred ---HHHHHhhcCCCEEEECCc
Confidence 6667765 499998865
No 107
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.60 E-value=1.4e+02 Score=30.11 Aligned_cols=75 Identities=23% Similarity=0.304 Sum_probs=53.9
Q ss_pred CCCCCcEEEEeCCc-cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTRI-IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~~-~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
..++|-+|+=++.. ++|--.+.+|...||+|+-+.+-.
T Consensus 155 i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t----------------------------------------- 193 (283)
T PRK14192 155 IELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT----------------------------------------- 193 (283)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc-----------------------------------------
Confidence 47999999999998 488778888899999887665310
Q ss_pred HHHHHHHHhhCCeEEEcC-ChhhhhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 294 QQIIKDLAKQCDVLVENF-VPGKLDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~-~pg~l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
..+.+.++.|||||... .|. + ++.+. +.|+.|.+++.
T Consensus 194 -~~L~~~~~~aDIvI~AtG~~~----~-v~~~~---lk~gavViDvg 231 (283)
T PRK14192 194 -QNLPELVKQADIIVGAVGKPE----L-IKKDW---IKQGAVVVDAG 231 (283)
T ss_pred -hhHHHHhccCCEEEEccCCCC----c-CCHHH---cCCCCEEEEEE
Confidence 11445568999999766 222 2 55554 56888888864
No 108
>PRK07985 oxidoreductase; Provisional
Probab=39.54 E-value=1.4e+02 Score=29.80 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=49.6
Q ss_pred CCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 216 PLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 216 pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.|+|-+||=.+. .--|-..++.|++.|++||-+-.....+.... ........+..-..+.+|+.+++..
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~Dl~~~~~~ 115 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQD----------VKKIIEECGRKAVLLPGDLSDEKFA 115 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHH----------HHHHHHHcCCeEEEEEccCCCHHHH
Confidence 477777776664 23366778889999999986532210010000 0011112222334578999998876
Q ss_pred HHHHHHH----hhCCeEEEcCC
Q psy16437 295 QIIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 295 ~~~~~Li----~~ADVvi~n~~ 312 (501)
+.+.+-+ ...|++|.|--
T Consensus 116 ~~~~~~~~~~~g~id~lv~~Ag 137 (294)
T PRK07985 116 RSLVHEAHKALGGLDIMALVAG 137 (294)
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 5443333 23699998853
No 109
>PRK09620 hypothetical protein; Provisional
Probab=39.47 E-value=1.6e+02 Score=28.74 Aligned_cols=39 Identities=21% Similarity=0.112 Sum_probs=32.9
Q ss_pred CCCCCCcEEEE-eCCccchhHHHHHHHHcCCcEEEEecCC
Q psy16437 214 SLPLSNVRILD-LTRIIAGPFCTMLLADLGAEVIKVEQPV 252 (501)
Q Consensus 214 ~~pL~GlrVld-l~~~~agp~a~~~LAdlGA~VIKVE~p~ 252 (501)
..+++.||.+. .|+..=|-..++.|...||+|+-|..+.
T Consensus 14 ~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~ 53 (229)
T PRK09620 14 LEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred cCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 46899999997 6667778889999999999999997653
No 110
>PRK08227 autoinducer 2 aldolase; Validated
Probab=39.36 E-value=21 Score=35.80 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=18.2
Q ss_pred hHHHHHHHHcCCcEEEEecC
Q psy16437 232 PFCTMLLADLGAEVIKVEQP 251 (501)
Q Consensus 232 p~a~~~LAdlGA~VIKVE~p 251 (501)
.+|+|+=++||||+||+..|
T Consensus 161 a~aaRiaaELGADiVK~~y~ 180 (264)
T PRK08227 161 SLATRIAAEMGAQIIKTYYV 180 (264)
T ss_pred HHHHHHHHHHcCCEEecCCC
Confidence 58999999999999999765
No 111
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.33 E-value=4.3e+02 Score=26.85 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=55.9
Q ss_pred CCCCCcEEEEeCCc-cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTRI-IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~~-~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
-.|+|-+|+=++.. +.|-..+++|...||+|+-+.+-.
T Consensus 154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t----------------------------------------- 192 (286)
T PRK14175 154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS----------------------------------------- 192 (286)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-----------------------------------------
Confidence 47999999999994 478778888889999999776310
Q ss_pred HHHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEee
Q psy16437 294 QQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTG 340 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~ 340 (501)
.-+.+.++.|||||....-.. + +..+. +.|+.|++++.-
T Consensus 193 -~~l~~~~~~ADIVIsAvg~p~---~-i~~~~---vk~gavVIDvGi 231 (286)
T PRK14175 193 -KDMASYLKDADVIVSAVGKPG---L-VTKDV---VKEGAVIIDVGN 231 (286)
T ss_pred -hhHHHHHhhCCEEEECCCCCc---c-cCHHH---cCCCcEEEEcCC
Confidence 126688999999997664211 2 44443 468888888753
No 112
>PRK12829 short chain dehydrogenase; Provisional
Probab=39.08 E-value=1.6e+02 Score=28.17 Aligned_cols=82 Identities=20% Similarity=0.129 Sum_probs=50.6
Q ss_pred CCCCcEEEEeCCc-cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCc--eEEEEeCCChh
Q psy16437 216 PLSNVRILDLTRI-IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNK--KSVCVDFKTPE 292 (501)
Q Consensus 216 pL~GlrVldl~~~-~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgK--rsv~lDl~~~~ 292 (501)
.|++-+||=.+.. --|-..++.|++.|++|+-+-... ... ........+. ..+.+|+.+++
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~--~~~--------------~~~~~~~~~~~~~~~~~D~~~~~ 71 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSE--AAL--------------AATAARLPGAKVTATVADVADPA 71 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH--HHH--------------HHHHHHHhcCceEEEEccCCCHH
Confidence 4777777766642 336677888889999998886422 000 1111112233 56889999988
Q ss_pred hHHHHH-H---HHhhCCeEEEcCCh
Q psy16437 293 GQQIIK-D---LAKQCDVLVENFVP 313 (501)
Q Consensus 293 g~~~~~-~---Li~~ADVvi~n~~p 313 (501)
....+. + .....|+||+|.-.
T Consensus 72 ~~~~~~~~~~~~~~~~d~vi~~ag~ 96 (264)
T PRK12829 72 QVERVFDTAVERFGGLDVLVNNAGI 96 (264)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 754322 2 23468999988753
No 113
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=38.68 E-value=1.3e+02 Score=27.51 Aligned_cols=108 Identities=18% Similarity=0.141 Sum_probs=60.9
Q ss_pred CCcEEEEeCCc--cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 218 SNVRILDLTRI--IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 218 ~GlrVldl~~~--~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
+|++|.=++.. -..=.-..+|+-||.+|.-+-|++.-=+.. +... ....-+...|.++-.++=|
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~---~~~~---~~~~~~~~~~g~~i~~~~~-------- 66 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPD---PEVL---EKAKKNAKKNGGKITITDD-------- 66 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHH---HHHH---HHHHHHHHHHTTEEEEESS--------
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCC---HHHH---HHHHHHHHHhCCCeEEEeC--------
Confidence 47777777751 112244678999999966665543000000 0000 0000122334555555523
Q ss_pred HHHHHHhhCCeEEEcCCh-----------hhhhhcCCCHHHHhhhCCCcEEEEEee
Q psy16437 296 IIKDLAKQCDVLVENFVP-----------GKLDRLNLGYKHLSEINSQLIYCSVTG 340 (501)
Q Consensus 296 ~~~~Li~~ADVvi~n~~p-----------g~l~~lGl~~~~L~~~nP~lI~~~~s~ 340 (501)
+.+.+++||||+..--. ..+..+.++.+-+...+|+.|+.+--+
T Consensus 67 -~~e~l~~aDvvy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP 121 (158)
T PF00185_consen 67 -IEEALKGADVVYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLP 121 (158)
T ss_dssp -HHHHHTT-SEEEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS
T ss_pred -HHHhcCCCCEEEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCC
Confidence 56789999999955433 223448999999998899999987655
No 114
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.62 E-value=1.2e+02 Score=28.82 Aligned_cols=86 Identities=15% Similarity=0.071 Sum_probs=48.0
Q ss_pred CCCcEEEEeCCc-cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 217 LSNVRILDLTRI-IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 217 L~GlrVldl~~~-~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
|+|-+||=.+.. --|-..++.|++.|++|+-+-... .+..... .......+.+-..+.+|+.+++..+
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~-~~~~~~~----------~~~~~~~~~~~~~~~~D~~~~~~~~ 70 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARS-RKAAEET----------AEEIEALGRKALAVKANVGDVEKIK 70 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC-HHHHHHH----------HHHHHhcCCeEEEEEcCCCCHHHHH
Confidence 455555544432 236778899999999998642111 1100000 0111222344456779999988754
Q ss_pred HHHHHH----hhCCeEEEcCCh
Q psy16437 296 IIKDLA----KQCDVLVENFVP 313 (501)
Q Consensus 296 ~~~~Li----~~ADVvi~n~~p 313 (501)
.+.+=+ ...|+||+|.-.
T Consensus 71 ~~~~~~~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 71 EMFAQIDEEFGRLDVFVNNAAS 92 (250)
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 433322 247999998753
No 115
>PRK08264 short chain dehydrogenase; Validated
Probab=38.43 E-value=1.8e+02 Score=27.40 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=48.9
Q ss_pred CCcEEEEeC-CccchhHHHHHHHHcCC-cEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 218 SNVRILDLT-RIIAGPFCTMLLADLGA-EVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 218 ~GlrVldl~-~~~agp~a~~~LAdlGA-~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
.+-+||=.+ +.--|-..++.|+..|+ .|+-+.... +... . ...+=..+..|+.+++..+
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~--~~~~-------------~----~~~~~~~~~~D~~~~~~~~ 65 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP--ESVT-------------D----LGPRVVPLQLDVTDPASVA 65 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh--hhhh-------------h----cCCceEEEEecCCCHHHHH
Confidence 344555554 23447788889999999 888886432 1100 0 1112245779999988866
Q ss_pred HHHHHHhhCCeEEEcCCh
Q psy16437 296 IIKDLAKQCDVLVENFVP 313 (501)
Q Consensus 296 ~~~~Li~~ADVvi~n~~p 313 (501)
.+.+-+...|+||+|...
T Consensus 66 ~~~~~~~~id~vi~~ag~ 83 (238)
T PRK08264 66 AAAEAASDVTILVNNAGI 83 (238)
T ss_pred HHHHhcCCCCEEEECCCc
Confidence 555555568999988754
No 116
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.03 E-value=1.1e+02 Score=28.97 Aligned_cols=72 Identities=18% Similarity=0.135 Sum_probs=44.8
Q ss_pred CCCcEEEEeC--CccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 217 LSNVRILDLT--RIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 217 L~GlrVldl~--~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
|.|-++|=.+ ..| |-..++.|+..|++||-+......+ . ...-..+.+|+.++ .
T Consensus 3 l~~k~~lVtGas~~i-G~~ia~~l~~~G~~v~~~~r~~~~~----~-----------------~~~~~~~~~D~~~~--~ 58 (235)
T PRK06550 3 FMTKTVLITGAASGI-GLAQARAFLAQGAQVYGVDKQDKPD----L-----------------SGNFHFLQLDLSDD--L 58 (235)
T ss_pred CCCCEEEEcCCCchH-HHHHHHHHHHCCCEEEEEeCCcccc----c-----------------CCcEEEEECChHHH--H
Confidence 5565566554 334 6677888999999999886432100 0 00123567888877 4
Q ss_pred HHHHHHHhhCCeEEEcCC
Q psy16437 295 QIIKDLAKQCDVLVENFV 312 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~ 312 (501)
+.+.+.+...|+||+|--
T Consensus 59 ~~~~~~~~~id~lv~~ag 76 (235)
T PRK06550 59 EPLFDWVPSVDILCNTAG 76 (235)
T ss_pred HHHHHhhCCCCEEEECCC
Confidence 444455567899998863
No 117
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=37.95 E-value=94 Score=30.79 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=42.8
Q ss_pred hhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhc-CCceEEEEeCCChhhHH----HHHHHHhhCC
Q psy16437 231 GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVN-RNKKSVCVDFKTPEGQQ----IIKDLAKQCD 305 (501)
Q Consensus 231 gp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~n-rgKrsv~lDl~~~~g~~----~~~~Li~~AD 305 (501)
|-.+++.|++.|+.||-+-.- -|-+-.. =..+. -...-+.+|+++.+..+ .+.+-...-|
T Consensus 19 G~A~A~~l~~~G~~vvl~aRR--~drL~~l-------------a~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iD 83 (246)
T COG4221 19 GEATARALAEAGAKVVLAARR--EERLEAL-------------ADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRID 83 (246)
T ss_pred HHHHHHHHHHCCCeEEEEecc--HHHHHHH-------------HHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCccc
Confidence 678899999999999988642 1211100 01111 23477899999988843 3344455689
Q ss_pred eEEEcC
Q psy16437 306 VLVENF 311 (501)
Q Consensus 306 Vvi~n~ 311 (501)
|||.|-
T Consensus 84 iLvNNA 89 (246)
T COG4221 84 ILVNNA 89 (246)
T ss_pred EEEecC
Confidence 999985
No 118
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=37.79 E-value=1.1e+02 Score=29.69 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=49.1
Q ss_pred CCCCCCcEEEE-eCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChh
Q psy16437 214 SLPLSNVRILD-LTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPE 292 (501)
Q Consensus 214 ~~pL~GlrVld-l~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~ 292 (501)
..|++.||.|. .|+.-=|-..++.|+..||+|+-+..+. ..+ + .. ...+|+.+.+
T Consensus 10 ~e~iD~VR~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~---~l~---~--------~~----------~~~~Dv~d~~ 65 (227)
T TIGR02114 10 SEPIDSVRSITNHSTGHLGKIITETFLSAGHEVTLVTTKR---ALK---P--------EP----------HPNLSIREIE 65 (227)
T ss_pred cCCCCCceeecCCcccHHHHHHHHHHHHCCCEEEEEcChh---hcc---c--------cc----------CCcceeecHH
Confidence 36899999996 3344457788999999999999874211 000 0 00 1347888877
Q ss_pred hHHHHHHH----HhhCCeEEEcCC
Q psy16437 293 GQQIIKDL----AKQCDVLVENFV 312 (501)
Q Consensus 293 g~~~~~~L----i~~ADVvi~n~~ 312 (501)
..+.+.+- +...|+||+|.-
T Consensus 66 s~~~l~~~v~~~~g~iDiLVnnAg 89 (227)
T TIGR02114 66 TTKDLLITLKELVQEHDILIHSMA 89 (227)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCE
Confidence 76544332 345899998875
No 119
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=37.74 E-value=25 Score=36.55 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=19.3
Q ss_pred hHHHHHHHHcCCcEEEEecCC
Q psy16437 232 PFCTMLLADLGAEVIKVEQPV 252 (501)
Q Consensus 232 p~a~~~LAdlGA~VIKVE~p~ 252 (501)
.+|+|+-++||||+||+..|+
T Consensus 220 a~AaRiaaELGADIVKv~yp~ 240 (348)
T PRK09250 220 GQANHLAATIGADIIKQKLPT 240 (348)
T ss_pred HHHHHHHHHHcCCEEEecCCC
Confidence 489999999999999999875
No 120
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=37.49 E-value=20 Score=35.78 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=19.0
Q ss_pred hHHHHHHHHcCCcEEEEecCC
Q psy16437 232 PFCTMLLADLGAEVIKVEQPV 252 (501)
Q Consensus 232 p~a~~~LAdlGA~VIKVE~p~ 252 (501)
.+|+|+=|++|||+||+.-|+
T Consensus 169 ~~aaRlaaelGADIiK~~ytg 189 (265)
T COG1830 169 GYAARLAAELGADIIKTKYTG 189 (265)
T ss_pred HHHHHHHHHhcCCeEeecCCC
Confidence 489999999999999998775
No 121
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=37.13 E-value=2e+02 Score=31.20 Aligned_cols=85 Identities=12% Similarity=0.133 Sum_probs=52.5
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
-|.|-||.=++.---.=..+++|.++|++|+-|-.+. ++. -| .+...+
T Consensus 311 ~L~GKrvai~Gdp~~~i~LarfL~elGmevV~vgt~~-~~~----------------~~---------------~~~d~~ 358 (457)
T CHL00073 311 LVRGKSVFFMGDNLLEISLARFLIRCGMIVYEIGIPY-MDK----------------RY---------------QAAELA 358 (457)
T ss_pred HHCCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeCC-CCh----------------hh---------------hHHHHH
Confidence 4899999733321111245899999999999995543 111 01 122355
Q ss_pred HHHHHHhh----CCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEE
Q psy16437 296 IIKDLAKQ----CDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSV 338 (501)
Q Consensus 296 ~~~~Li~~----ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~ 338 (501)
.+.++++. .-+++++..+..+. +.+++..|+|+.+.+
T Consensus 359 ~l~~~~~~~~~~~~vive~~D~~el~------~~i~~~~pDLlIgG~ 399 (457)
T CHL00073 359 LLEDTCRKMNVPMPRIVEKPDNYNQI------QRIRELQPDLAITGM 399 (457)
T ss_pred HHHHHhhhcCCCCcEEEeCCCHHHHH------HHHhhCCCCEEEccc
Confidence 56667663 23567777666554 446777899998764
No 122
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.56 E-value=3e+02 Score=26.32 Aligned_cols=80 Identities=16% Similarity=0.104 Sum_probs=48.2
Q ss_pred CCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 216 PLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 216 pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.|.|-+||=.+. .--|-..++.|++.|++|+-+-... .+.. .... ..+-..+.+|+.+++..
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~-~~~~--------------~~l~--~~~~~~~~~Dl~~~~~~ 66 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA-ENEA--------------KELR--EKGVFTIKCDVGNRDQV 66 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc-HHHH--------------HHHH--hCCCeEEEecCCCHHHH
Confidence 356666665543 2336677889999999998663211 0000 0011 11346788999999887
Q ss_pred HHHHHHH----hhCCeEEEcCC
Q psy16437 295 QIIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 295 ~~~~~Li----~~ADVvi~n~~ 312 (501)
+.+.+-+ ...|+||+|--
T Consensus 67 ~~~~~~~~~~~~~id~li~~ag 88 (255)
T PRK06463 67 KKSKEVVEKEFGRVDVLVNNAG 88 (255)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 5554443 25799998863
No 123
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=36.51 E-value=1.5e+02 Score=32.28 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=23.3
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEE
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKV 248 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKV 248 (501)
.-|.|.||+=++...=.-....+|.+||.+|+.+
T Consensus 331 ~~L~GKrv~i~~g~~~~~~~~~~l~ELGmevv~~ 364 (466)
T TIGR01282 331 PRLEGKTVMLYVGGLRPRHVIGAFEDLGMEVIGT 364 (466)
T ss_pred HhcCCCEEEEECCCCcHHHHHHHHHHCCCEEEEE
Confidence 3599999987763221223344789999999855
No 124
>PRK06949 short chain dehydrogenase; Provisional
Probab=36.04 E-value=1.8e+02 Score=27.72 Aligned_cols=86 Identities=17% Similarity=0.129 Sum_probs=51.6
Q ss_pred CCCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
..|+|-+||=.+. ..-|-..++.|+..|++||-+... .+..+.. ...+...+.+-..+.+|+.+++.
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~--~~~~~~~----------~~~l~~~~~~~~~~~~D~~~~~~ 72 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRR--VERLKEL----------RAEIEAEGGAAHVVSLDVTDYQS 72 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC--HHHHHHH----------HHHHHhcCCcEEEEEecCCCHHH
Confidence 3588888888764 344778888899999999977542 1111110 00011112234578899998876
Q ss_pred HHHHHHHH----hhCCeEEEcCC
Q psy16437 294 QQIIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 294 ~~~~~~Li----~~ADVvi~n~~ 312 (501)
.+.+.+-+ ...|+||+|.-
T Consensus 73 ~~~~~~~~~~~~~~~d~li~~ag 95 (258)
T PRK06949 73 IKAAVAHAETEAGTIDILVNNSG 95 (258)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 54333322 24799998875
No 125
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=35.91 E-value=6.1 Score=40.05 Aligned_cols=20 Identities=45% Similarity=0.542 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhhhhhccc
Q psy16437 161 KKKKKKKKKKKKKKKKKKNI 180 (501)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~ 180 (501)
|||+||||+|-+.+.+..++
T Consensus 7 KKNnKkKKsK~K~~~~~~~a 26 (302)
T PF07139_consen 7 KKNNKKKKSKPKPHQGNKDA 26 (302)
T ss_pred CCCCccCCCCCCcccCCCCc
Confidence 34433333333333344443
No 126
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=35.47 E-value=69 Score=35.26 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=30.0
Q ss_pred CCCcE-EEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 217 LSNVR-ILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 217 L~Glr-Vldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
..++| |+|..+..+++++.++|-.+|++|+-|..
T Consensus 208 ~~~lkVvvd~~~G~~~~~~~~ll~~lG~~v~~l~~ 242 (522)
T cd05801 208 KSGLRLGVDPLGGASVPYWQPIAEKYGLNLTVVNP 242 (522)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHcCCCEEEEcC
Confidence 45788 57999999999999999999999998864
No 127
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=35.36 E-value=43 Score=33.57 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=26.9
Q ss_pred EEEEeCCccchhHHHHHHHHcCCcEEEEecC
Q psy16437 221 RILDLTRIIAGPFCTMLLADLGAEVIKVEQP 251 (501)
Q Consensus 221 rVldl~~~~agp~a~~~LAdlGA~VIKVE~p 251 (501)
.|+=++..++|..++..|+..|-+|+-||.-
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhc
Confidence 5888899999999999999999999999973
No 128
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=35.35 E-value=99 Score=29.78 Aligned_cols=81 Identities=16% Similarity=0.057 Sum_probs=48.6
Q ss_pred CCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 217 LSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 217 L~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
|.+-+||=.+. .--|-.+++.|+..|++|+-+.... +.. .......+..-..+.+|+.+++..+
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~--~~~-------------~~~~~~~~~~~~~~~~D~~~~~~~~ 68 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKP--ARA-------------RLAALEIGPAAIAVSLDVTRQDSID 68 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCH--HHH-------------HHHHHHhCCceEEEEccCCCHHHHH
Confidence 44445554432 2237788999999999999885321 100 0112222333456788999998865
Q ss_pred HHHHHH----hhCCeEEEcCC
Q psy16437 296 IIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 296 ~~~~Li----~~ADVvi~n~~ 312 (501)
.+.+-+ ...|+||+|--
T Consensus 69 ~~~~~~~~~~~~id~li~~ag 89 (257)
T PRK07067 69 RIVAAAVERFGGIDILFNNAA 89 (257)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 544433 35799998853
No 129
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=34.96 E-value=2.6e+02 Score=30.47 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=24.2
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecC
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQP 251 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p 251 (501)
-|.|.||+=++..--.=..+++|.++|.+|+.+-..
T Consensus 321 ~l~Gk~vaI~~~~~~~~~la~~l~ElGm~v~~~~~~ 356 (475)
T PRK14478 321 RLEGKRVLLYTGGVKSWSVVKALQELGMEVVGTSVK 356 (475)
T ss_pred HhCCCEEEEEcCCchHHHHHHHHHHCCCEEEEEEEE
Confidence 489999965443211113466889999999998643
No 130
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=34.89 E-value=43 Score=35.26 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=27.6
Q ss_pred EEEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 221 RILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 221 rVldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
.|+=++...||.+|+..||..|.+|+-+|.
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk 34 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEK 34 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEec
Confidence 477788899999999999999999999997
No 131
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=34.88 E-value=24 Score=25.35 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=22.2
Q ss_pred HhcCCHHHHHHHhhcCCCeEEeeCCh
Q psy16437 37 TMEKTTEEWLLIFQGVSFPYAQVNSI 62 (501)
Q Consensus 37 f~~~t~~ew~~~l~~~~VP~apV~t~ 62 (501)
+.+.+-+|+.+.|.+.|+|.+||-+-
T Consensus 3 ~~~LSd~eL~~~L~~~G~~~gPIt~s 28 (44)
T smart00540 3 VDRLSDAELRAELKQYGLPPGPITDT 28 (44)
T ss_pred hhHcCHHHHHHHHHHcCCCCCCcCcc
Confidence 45678899999999999999999753
No 132
>PLN02371 phosphoglucosamine mutase family protein
Probab=34.76 E-value=54 Score=36.70 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=28.4
Q ss_pred CCCCcEE-EEeCCccchhHHHHHHHHcCCcEE
Q psy16437 216 PLSNVRI-LDLTRIIAGPFCTMLLADLGAEVI 246 (501)
Q Consensus 216 pL~GlrV-ldl~~~~agp~a~~~LAdlGA~VI 246 (501)
+++|+|| +|..+..++.++..+|-.+|++|+
T Consensus 260 ~~~~lkIvvD~~nGag~~~~~~lL~~LG~~v~ 291 (583)
T PLN02371 260 PLEGFKIVVDAGNGAGGFFAEKVLEPLGADTS 291 (583)
T ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCCeE
Confidence 5788886 699999999999999999999999
No 133
>PRK06125 short chain dehydrogenase; Provisional
Probab=34.70 E-value=1.5e+02 Score=28.51 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=51.8
Q ss_pred CCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhh-hcCCceEEEEeCCChhh
Q psy16437 216 PLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTC-VNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 216 pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~-~nrgKrsv~lDl~~~~g 293 (501)
.|+|-+||=.+. .--|-..++.|+..|++|+-+.... +..... ...... .+..-..+.+|+.+++.
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~--~~~~~~----------~~~l~~~~~~~~~~~~~D~~~~~~ 71 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDA--DALEAL----------AADLRAAHGVDVAVHALDLSSPEA 71 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHH----------HHHHHhhcCCceEEEEecCCCHHH
Confidence 366766665554 2346677788889999998886421 111000 000010 11122467789999999
Q ss_pred HHHHHHHHhhCCeEEEcCC
Q psy16437 294 QQIIKDLAKQCDVLVENFV 312 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~~ 312 (501)
.+.+.+-+...|++|.|.-
T Consensus 72 ~~~~~~~~g~id~lv~~ag 90 (259)
T PRK06125 72 REQLAAEAGDIDILVNNAG 90 (259)
T ss_pred HHHHHHHhCCCCEEEECCC
Confidence 8777776778999998853
No 134
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=34.49 E-value=1.6e+02 Score=26.43 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=47.2
Q ss_pred CCCCCcEEEEeCCc-cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTRI-IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~~-~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
-+|+|-+|+=++.. .-|--.+.+|...||+|+.+++-. .
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t-~--------------------------------------- 63 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT-I--------------------------------------- 63 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC-c---------------------------------------
Confidence 46888877777664 334334555567799999987521 0
Q ss_pred HHHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEE
Q psy16437 294 QQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCS 337 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~ 337 (501)
-+.+.++.|||||....-.. + ++.+-|+ |+-+.++
T Consensus 64 --~l~~~v~~ADIVvsAtg~~~---~-i~~~~ik---pGa~Vid 98 (140)
T cd05212 64 --QLQSKVHDADVVVVGSPKPE---K-VPTEWIK---PGATVIN 98 (140)
T ss_pred --CHHHHHhhCCEEEEecCCCC---c-cCHHHcC---CCCEEEE
Confidence 14458999999996543211 1 5666544 8888763
No 135
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=34.46 E-value=19 Score=35.32 Aligned_cols=10 Identities=10% Similarity=0.258 Sum_probs=4.3
Q ss_pred hhhcCcEEEe
Q psy16437 71 IQDIKLVKEI 80 (501)
Q Consensus 71 ~~arg~~~~v 80 (501)
+-.++++..+
T Consensus 63 Li~~~l~~R~ 72 (232)
T TIGR00869 63 LIKNQMVIRV 72 (232)
T ss_pred HHHcCCEEEE
Confidence 3344444443
No 136
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.19 E-value=1.2e+02 Score=29.12 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=41.5
Q ss_pred hhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHHHHH----hhCCe
Q psy16437 231 GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIKDLA----KQCDV 306 (501)
Q Consensus 231 gp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~~Li----~~ADV 306 (501)
|-..++.|++.|++||-+-... .+..... ...+...+.+=..+.+|+.+++....+.+-+ ...|+
T Consensus 15 G~~la~~L~~~g~~vi~~~r~~-~~~~~~~----------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (256)
T PRK12745 15 GLGIARALAAAGFDLAINDRPD-DEELAAT----------QQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRIDC 83 (256)
T ss_pred HHHHHHHHHHCCCEEEEEecCc-hhHHHHH----------HHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCE
Confidence 5677888999999999886422 1110000 0011111122356789999988765554444 35799
Q ss_pred EEEcC
Q psy16437 307 LVENF 311 (501)
Q Consensus 307 vi~n~ 311 (501)
||+|.
T Consensus 84 vi~~a 88 (256)
T PRK12745 84 LVNNA 88 (256)
T ss_pred EEECC
Confidence 99985
No 137
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.12 E-value=2e+02 Score=29.34 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=50.0
Q ss_pred CCCCCcEEEEeC-Cccch-hHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChh
Q psy16437 215 LPLSNVRILDLT-RIIAG-PFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPE 292 (501)
Q Consensus 215 ~pL~GlrVldl~-~~~ag-p~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~ 292 (501)
.+|+|-+|+=++ ..+-| |++ ++|...|++|+-..+.. + |
T Consensus 154 i~~~Gk~V~viGrs~~mG~PmA-~~L~~~g~tVtv~~~rT----------------------------~-----~----- 194 (296)
T PRK14188 154 GDLSGLNAVVIGRSNLVGKPMA-QLLLAANATVTIAHSRT----------------------------R-----D----- 194 (296)
T ss_pred CCCCCCEEEEEcCCcchHHHHH-HHHHhCCCEEEEECCCC----------------------------C-----C-----
Confidence 379999999998 44445 555 55556799998774321 0 1
Q ss_pred hHHHHHHHHhhCCeEEEcCChh-hhhhcCCCHHHHhhhCCCcEEEEEee
Q psy16437 293 GQQIIKDLAKQCDVLVENFVPG-KLDRLNLGYKHLSEINSQLIYCSVTG 340 (501)
Q Consensus 293 g~~~~~~Li~~ADVvi~n~~pg-~l~~lGl~~~~L~~~nP~lI~~~~s~ 340 (501)
+.++++.|||||....-. .++. + + +.|+-|++++.-
T Consensus 195 ----l~e~~~~ADIVIsavg~~~~v~~-----~-~--lk~GavVIDvGi 231 (296)
T PRK14188 195 ----LPAVCRRADILVAAVGRPEMVKG-----D-W--IKPGATVIDVGI 231 (296)
T ss_pred ----HHHHHhcCCEEEEecCChhhcch-----h-e--ecCCCEEEEcCC
Confidence 478899999999776532 2211 1 1 679999998853
No 138
>PLN02427 UDP-apiose/xylose synthase
Probab=34.11 E-value=3.3e+02 Score=28.17 Aligned_cols=84 Identities=13% Similarity=0.092 Sum_probs=48.9
Q ss_pred CCCCCcEEEEeCC-ccchhHHHHHHHHc-CCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChh
Q psy16437 215 LPLSNVRILDLTR-IIAGPFCTMLLADL-GAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPE 292 (501)
Q Consensus 215 ~pL~GlrVldl~~-~~agp~a~~~LAdl-GA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~ 292 (501)
.|++..|||=.+. ..-|-...+.|... |.+|+=+.... .......+. ....+..+=+-+..|+++++
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~--~~~~~l~~~---------~~~~~~~~~~~~~~Dl~d~~ 78 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN--DKIKHLLEP---------DTVPWSGRIQFHRINIKHDS 78 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc--hhhhhhhcc---------ccccCCCCeEEEEcCCCChH
Confidence 5788888887763 34466666666666 68888775321 111110000 00001112356678998765
Q ss_pred hHHHHHHHHhhCCeEEEcCC
Q psy16437 293 GQQIIKDLAKQCDVLVENFV 312 (501)
Q Consensus 293 g~~~~~~Li~~ADVvi~n~~ 312 (501)
. +.++++.+|+||+.-.
T Consensus 79 ~---l~~~~~~~d~ViHlAa 95 (386)
T PLN02427 79 R---LEGLIKMADLTINLAA 95 (386)
T ss_pred H---HHHHhhcCCEEEEccc
Confidence 4 7788889999997653
No 139
>PRK12742 oxidoreductase; Provisional
Probab=33.89 E-value=2.4e+02 Score=26.53 Aligned_cols=81 Identities=16% Similarity=0.059 Sum_probs=46.3
Q ss_pred CCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 216 PLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 216 pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
+|+|-+||=.+. .--|-..++.|+..|++|+-+-... .+... . .....+-+.+.+|+.+++..
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~-~~~~~-------------~--l~~~~~~~~~~~D~~~~~~~ 66 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGS-KDAAE-------------R--LAQETGATAVQTDSADRDAV 66 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCC-HHHHH-------------H--HHHHhCCeEEecCCCCHHHH
Confidence 467777776653 2336677888999999998553211 11000 0 00111335677899887654
Q ss_pred HHHHHHHhhCCeEEEcCC
Q psy16437 295 QIIKDLAKQCDVLVENFV 312 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~ 312 (501)
..+.+-...-|+||+|.-
T Consensus 67 ~~~~~~~~~id~li~~ag 84 (237)
T PRK12742 67 IDVVRKSGALDILVVNAG 84 (237)
T ss_pred HHHHHHhCCCcEEEECCC
Confidence 333332334799998864
No 140
>PRK06398 aldose dehydrogenase; Validated
Probab=33.80 E-value=2.9e+02 Score=26.70 Aligned_cols=73 Identities=18% Similarity=0.085 Sum_probs=47.4
Q ss_pred CCCCcEEEEeCCc-cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 216 PLSNVRILDLTRI-IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 216 pL~GlrVldl~~~-~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.|+|-+||=.+.. --|-..++.|++.|++||-+.... .+ +..-..+.+|+.+++..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~-~~----------------------~~~~~~~~~D~~~~~~i 59 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKE-PS----------------------YNDVDYFKVDVSNKEQV 59 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc-cc----------------------cCceEEEEccCCCHHHH
Confidence 3667666666542 336678899999999999775321 00 01234578999999875
Q ss_pred HHH-HHHH---hhCCeEEEcC
Q psy16437 295 QII-KDLA---KQCDVLVENF 311 (501)
Q Consensus 295 ~~~-~~Li---~~ADVvi~n~ 311 (501)
+.+ .++. ..-|+||+|-
T Consensus 60 ~~~~~~~~~~~~~id~li~~A 80 (258)
T PRK06398 60 IKGIDYVISKYGRIDILVNNA 80 (258)
T ss_pred HHHHHHHHHHcCCCCEEEECC
Confidence 443 3333 2579999875
No 141
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=33.74 E-value=66 Score=28.61 Aligned_cols=48 Identities=25% Similarity=0.415 Sum_probs=36.0
Q ss_pred chhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHHHHHhhCCeEEE
Q psy16437 230 AGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIKDLAKQCDVLVE 309 (501)
Q Consensus 230 agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~~Li~~ADVvi~ 309 (501)
.+++...+|.++|.+|+.+..- +|. .++=++.+.+.+..+|+||+
T Consensus 18 n~~~l~~~l~~~G~~v~~~~~v--~Dd---------------------------------~~~i~~~l~~~~~~~D~Vit 62 (144)
T PF00994_consen 18 NGPFLAALLEELGIEVIRYGIV--PDD---------------------------------PDAIKEALRRALDRADLVIT 62 (144)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEE--ESS---------------------------------HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCeeeEEEEE--CCC---------------------------------HHHHHHHHHhhhccCCEEEE
Confidence 4799999999999999988753 221 12345667888899999997
Q ss_pred cCC
Q psy16437 310 NFV 312 (501)
Q Consensus 310 n~~ 312 (501)
+--
T Consensus 63 tGG 65 (144)
T PF00994_consen 63 TGG 65 (144)
T ss_dssp ESS
T ss_pred cCC
Confidence 653
No 142
>PRK07774 short chain dehydrogenase; Provisional
Probab=33.71 E-value=2.5e+02 Score=26.62 Aligned_cols=82 Identities=18% Similarity=0.166 Sum_probs=49.3
Q ss_pred CCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhh-cC--CceEEEEeCCCh
Q psy16437 216 PLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCV-NR--NKKSVCVDFKTP 291 (501)
Q Consensus 216 pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~-nr--gKrsv~lDl~~~ 291 (501)
.++|-+||=.+. ..-|-..++.|+..|++||-+.... +... ...... +. +-..+.+|+.++
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~--~~~~-------------~~~~~~~~~~~~~~~~~~Dl~~~ 67 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINA--EGAE-------------RVAKQIVADGGTAIAVQVDVSDP 67 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHH-------------HHHHHHHhcCCcEEEEEcCCCCH
Confidence 356666666554 3447788888899999999886432 1000 000111 11 224578999998
Q ss_pred hhHHHHHHHH----hhCCeEEEcCC
Q psy16437 292 EGQQIIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 292 ~g~~~~~~Li----~~ADVvi~n~~ 312 (501)
+..+.+.+-+ ...|+||+|-.
T Consensus 68 ~~~~~~~~~~~~~~~~id~vi~~ag 92 (250)
T PRK07774 68 DSAKAMADATVSAFGGIDYLVNNAA 92 (250)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCC
Confidence 8754433333 35799998775
No 143
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=33.65 E-value=1.6e+02 Score=29.79 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=52.3
Q ss_pred CcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHH
Q psy16437 219 NVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIK 298 (501)
Q Consensus 219 GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~ 298 (501)
+.+|.=++...-|-..++.|++.|-+|+-+.+.. + .-+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~------------------~-----------------------~~~~ 42 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS------------------G-----------------------LSLA 42 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC------------------C-----------------------CCHH
Confidence 4567667777667777888999999997655321 0 1144
Q ss_pred HHHhhCCeEEEcCChhhhhhcCCCHHHHhh--hCCCcEEEEEe
Q psy16437 299 DLAKQCDVLVENFVPGKLDRLNLGYKHLSE--INSQLIYCSVT 339 (501)
Q Consensus 299 ~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~--~nP~lI~~~~s 339 (501)
+++++|||||...+...++.+- +.+.. ..|+.|+++++
T Consensus 43 ~~~~~advvi~~vp~~~~~~v~---~~l~~~~~~~~~ivi~~s 82 (308)
T PRK14619 43 AVLADADVIVSAVSMKGVRPVA---EQVQALNLPPETIIVTAT 82 (308)
T ss_pred HHHhcCCEEEEECChHHHHHHH---HHHHHhcCCCCcEEEEeC
Confidence 7788999999988876665542 44542 46777777765
No 144
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.64 E-value=5.2e+02 Score=26.19 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=50.1
Q ss_pred CCCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
-+|+|-+|+=++. .+-|--.+++|...||+|+-..+.. .
T Consensus 154 i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t-------------------~--------------------- 193 (284)
T PRK14179 154 VELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT-------------------R--------------------- 193 (284)
T ss_pred CCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC-------------------C---------------------
Confidence 4799999888887 5555444555557899998762210 0
Q ss_pred HHHHHHHHhhCCeEEEcCC-hhhhhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 294 QQIIKDLAKQCDVLVENFV-PGKLDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~~-pg~l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
-+.+.+++|||||.... |+.+ ..+- +.|+-|+++++
T Consensus 194 --~l~~~~~~ADIVI~avg~~~~v-----~~~~---ik~GavVIDvg 230 (284)
T PRK14179 194 --NLAEVARKADILVVAIGRGHFV-----TKEF---VKEGAVVIDVG 230 (284)
T ss_pred --CHHHHHhhCCEEEEecCccccC-----CHHH---ccCCcEEEEec
Confidence 15678999999997665 3322 2121 67999998874
No 145
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.54 E-value=1.9e+02 Score=28.49 Aligned_cols=84 Identities=17% Similarity=0.043 Sum_probs=51.5
Q ss_pred CCCCCcEEEEeCC----ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCC
Q psy16437 215 LPLSNVRILDLTR----IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKT 290 (501)
Q Consensus 215 ~pL~GlrVldl~~----~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~ 290 (501)
+-|.|-+||=.+. .| |-..++.|++.|+.|+-+-. .+..... .......++ ....+.+|+.+
T Consensus 6 ~~~~~k~~lItGas~~~GI-G~aia~~la~~G~~V~l~~r---~~~~~~~---------~~~l~~~~~-~~~~~~~Dl~~ 71 (272)
T PRK08159 6 GLMAGKRGLILGVANNRSI-AWGIAKACRAAGAELAFTYQ---GDALKKR---------VEPLAAELG-AFVAGHCDVTD 71 (272)
T ss_pred ccccCCEEEEECCCCCCcH-HHHHHHHHHHCCCEEEEEcC---chHHHHH---------HHHHHHhcC-CceEEecCCCC
Confidence 4567766776664 34 77889999999999986632 1110000 001111111 23468899999
Q ss_pred hhhHHHHHHHHh----hCCeEEEcCC
Q psy16437 291 PEGQQIIKDLAK----QCDVLVENFV 312 (501)
Q Consensus 291 ~~g~~~~~~Li~----~ADVvi~n~~ 312 (501)
++..+.+.+-+. .-|+||.|--
T Consensus 72 ~~~v~~~~~~~~~~~g~iD~lv~nAG 97 (272)
T PRK08159 72 EASIDAVFETLEKKWGKLDFVVHAIG 97 (272)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEECCc
Confidence 998876655443 4799999863
No 146
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=33.42 E-value=98 Score=32.71 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=27.2
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecC
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQP 251 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p 251 (501)
..|.|.||.=.+...-.-..+++|.++|++|+.+-.+
T Consensus 272 ~~l~Gkrv~i~g~~~~~~~la~~L~elGm~vv~~~t~ 308 (396)
T cd01979 272 DLLRGKSIFFMGDNLLEIPLARFLTRCGMIVVEVGTP 308 (396)
T ss_pred HhhcCCEEEEECCchHHHHHHHHHHHCCCEEEeeCCC
Confidence 3589999986655332335688999999999998543
No 147
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=33.23 E-value=1.3e+02 Score=29.20 Aligned_cols=75 Identities=20% Similarity=0.059 Sum_probs=46.8
Q ss_pred CCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 217 LSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 217 L~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
|+|-+||=.+. .-=|-..++.|+..|++|+-+.... +.. . ..+-..+.+|+.+++..+
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~--~~~------------~-------~~~~~~~~~D~~~~~~~~ 65 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHG--GDG------------Q-------HENYQFVPTDVSSAEEVN 65 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--ccc------------c-------cCceEEEEccCCCHHHHH
Confidence 56655554432 2225677888999999999886432 100 0 012345789999998865
Q ss_pred HHHHHH----hhCCeEEEcCC
Q psy16437 296 IIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 296 ~~~~Li----~~ADVvi~n~~ 312 (501)
.+.+-+ ...|+||+|--
T Consensus 66 ~~~~~~~~~~g~id~li~~Ag 86 (266)
T PRK06171 66 HTVAEIIEKFGRIDGLVNNAG 86 (266)
T ss_pred HHHHHHHHHcCCCCEEEECCc
Confidence 544433 24799998864
No 148
>PRK06172 short chain dehydrogenase; Provisional
Probab=33.16 E-value=1.8e+02 Score=27.74 Aligned_cols=85 Identities=13% Similarity=0.057 Sum_probs=49.1
Q ss_pred CCCCcEEEEeCCc-cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 216 PLSNVRILDLTRI-IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 216 pL~GlrVldl~~~-~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.|+|-+||=.+.. --|-..++.|++.|++|+-+.... +..... .......+..-..+.+|+.+++..
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~--~~~~~~----------~~~~~~~~~~~~~~~~D~~~~~~i 71 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDA--AGGEET----------VALIREAGGEALFVACDVTRDAEV 71 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHH----------HHHHHhcCCceEEEEcCCCCHHHH
Confidence 3667777766532 336677888899999999886421 111100 011122222335678999998765
Q ss_pred HHHHHHH----hhCCeEEEcCC
Q psy16437 295 QIIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 295 ~~~~~Li----~~ADVvi~n~~ 312 (501)
+.+.+-+ ..-|+||+|.-
T Consensus 72 ~~~~~~~~~~~g~id~li~~ag 93 (253)
T PRK06172 72 KALVEQTIAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 4433322 23499998864
No 149
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=33.14 E-value=1.4e+02 Score=28.70 Aligned_cols=99 Identities=18% Similarity=0.163 Sum_probs=55.4
Q ss_pred CCCCCcEEEEeCCc-cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTRI-IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~~-~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
..|+|-+|+=++.. +-|--.+.+|...||.|+-+..- +..+..- .-..+.|-+ ..++.
T Consensus 58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~--~~~~~~~----------------~~~~~hs~t-~~~~~-- 116 (197)
T cd01079 58 NRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDIN--GIQVFTR----------------GESIRHEKH-HVTDE-- 116 (197)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecC--ccccccc----------------ccccccccc-cccch--
Confidence 47999998888874 44544466667789999987642 2222110 000011111 00000
Q ss_pred HHHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEee
Q psy16437 294 QQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTG 340 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~ 340 (501)
-..+.+++++|||||...--..+ =+..+-+ .|+-|++++.-
T Consensus 117 ~~~l~~~~~~ADIVIsAvG~~~~---~i~~d~i---k~GavVIDVGi 157 (197)
T cd01079 117 EAMTLDCLSQSDVVITGVPSPNY---KVPTELL---KDGAICINFAS 157 (197)
T ss_pred hhHHHHHhhhCCEEEEccCCCCC---ccCHHHc---CCCcEEEEcCC
Confidence 12367899999999976542111 1344544 48999988653
No 150
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=33.10 E-value=2.4e+02 Score=28.96 Aligned_cols=95 Identities=15% Similarity=0.082 Sum_probs=56.1
Q ss_pred CCCCCcEEEEeCCc---cchhHHHHHHHHcCC-cEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCC
Q psy16437 215 LPLSNVRILDLTRI---IAGPFCTMLLADLGA-EVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKT 290 (501)
Q Consensus 215 ~pL~GlrVldl~~~---~agp~a~~~LAdlGA-~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~ 290 (501)
+.|+|++|.=++.. -..-....+|+-+|+ +|.-+-|+.. . |... . + ++-.++=|
T Consensus 153 g~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~-~------p~~~--------~---~-~~~~~~~d--- 210 (310)
T PRK13814 153 PHWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSL-L------PDKV--------G---N-DSIKKFTE--- 210 (310)
T ss_pred CCcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCccc-C------cCcc--------c---c-ceEEEEcC---
Confidence 45999999988774 234556788999998 8877776431 1 1100 0 0 12222222
Q ss_pred hhhHHHHHHHHhhCCeEEEcCC-------h---hhhh-hcCCCHHHHhhhCCCcEEEE
Q psy16437 291 PEGQQIIKDLAKQCDVLVENFV-------P---GKLD-RLNLGYKHLSEINSQLIYCS 337 (501)
Q Consensus 291 ~~g~~~~~~Li~~ADVvi~n~~-------p---g~l~-~lGl~~~~L~~~nP~lI~~~ 337 (501)
+.+.+++||||...-= + ..+. .+.++.+-+...+|+.|+.+
T Consensus 211 ------~~ea~~~aDvvy~~~~~~er~~~~~~~~~~~~~y~v~~~~l~~a~~~~i~mH 262 (310)
T PRK13814 211 ------LKPSLLNSDVIVTLRLQKERHDNSVDIDAFRGSFRLTPEKLYSAKPDAIVMH 262 (310)
T ss_pred ------HHHHhCCCCEEEECccccccccchhHHHHhCCCcccCHHHHHhcCCCCEEEC
Confidence 4567899999985110 1 1122 26677777766677766653
No 151
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=33.09 E-value=96 Score=34.37 Aligned_cols=36 Identities=22% Similarity=0.175 Sum_probs=32.9
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
.+-.|-+|+=++...+|=.++..|+.+|++|+-+|.
T Consensus 133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~ 168 (564)
T PRK12771 133 APDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEA 168 (564)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 356799999999999999999999999999999985
No 152
>PRK06128 oxidoreductase; Provisional
Probab=33.05 E-value=1.8e+02 Score=28.93 Aligned_cols=88 Identities=15% Similarity=0.047 Sum_probs=49.4
Q ss_pred CCCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
..|+|-+||=.+. .--|-..++.|+..|++|+-+-.....+..... -.........-..+.+|+.+++.
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~Dl~~~~~ 120 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEV----------VQLIQAEGRKAVALPGDLKDEAF 120 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHH----------HHHHHHcCCeEEEEecCCCCHHH
Confidence 3578877776653 223667888899999999865322100000000 00011112223456789999887
Q ss_pred HHHHH-HHH---hhCCeEEEcCC
Q psy16437 294 QQIIK-DLA---KQCDVLVENFV 312 (501)
Q Consensus 294 ~~~~~-~Li---~~ADVvi~n~~ 312 (501)
.+.+. ++. ..-|+||+|--
T Consensus 121 v~~~~~~~~~~~g~iD~lV~nAg 143 (300)
T PRK06128 121 CRQLVERAVKELGGLDILVNIAG 143 (300)
T ss_pred HHHHHHHHHHHhCCCCEEEECCc
Confidence 54433 333 35799999874
No 153
>KOG0029|consensus
Probab=32.61 E-value=50 Score=36.24 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=31.9
Q ss_pred CCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCC
Q psy16437 217 LSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPV 252 (501)
Q Consensus 217 L~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~ 252 (501)
..-.+|+=++..+||=.|++.|.++|.+|+-+|.-.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence 344569999999999999999999999999999754
No 154
>PRK05875 short chain dehydrogenase; Provisional
Probab=32.50 E-value=2.6e+02 Score=27.11 Aligned_cols=85 Identities=12% Similarity=-0.012 Sum_probs=49.7
Q ss_pred CCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhc--CCceEEEEeCCChh
Q psy16437 216 PLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVN--RNKKSVCVDFKTPE 292 (501)
Q Consensus 216 pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~n--rgKrsv~lDl~~~~ 292 (501)
.|++-+||=.+. .--|-..++.|++.|++|+-+-... +..+.. .......+ .+...+.+|+.+++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~--~~~~~~----------~~~l~~~~~~~~~~~~~~Dl~~~~ 71 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNP--DKLAAA----------AEEIEALKGAGAVRYEPADVTDED 71 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCH--HHHHHH----------HHHHHhccCCCceEEEEcCCCCHH
Confidence 366777777764 2347788888999999999876421 111100 00001111 23355678999988
Q ss_pred hHHHH-HHHHh---hCCeEEEcCC
Q psy16437 293 GQQII-KDLAK---QCDVLVENFV 312 (501)
Q Consensus 293 g~~~~-~~Li~---~ADVvi~n~~ 312 (501)
..+.+ .++.+ ..|+||+|.-
T Consensus 72 ~~~~~~~~~~~~~~~~d~li~~ag 95 (276)
T PRK05875 72 QVARAVDAATAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 65433 22322 5799999874
No 155
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=32.35 E-value=78 Score=30.58 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=46.5
Q ss_pred CCCcEEEEeCCc-cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 217 LSNVRILDLTRI-IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 217 L~GlrVldl~~~-~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
|.|-++|=.+.. -=|-..++.|++.|++|+-+......+. .......+..-..+.+|+.+++..+
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~--------------~~~~~~~~~~~~~~~~Dl~~~~~~~ 73 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTET--------------IEQVTALGRRFLSLTADLRKIDGIP 73 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcchHHH--------------HHHHHhcCCeEEEEECCCCCHHHHH
Confidence 666666655542 2366788999999999997632110000 0001111112246789999877654
Q ss_pred HHHHHH----hhCCeEEEcCC
Q psy16437 296 IIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 296 ~~~~Li----~~ADVvi~n~~ 312 (501)
.+.+-+ ..-|+||+|--
T Consensus 74 ~~~~~~~~~~~~~D~li~~Ag 94 (253)
T PRK08993 74 ALLERAVAEFGHIDILVNNAG 94 (253)
T ss_pred HHHHHHHHHhCCCCEEEECCC
Confidence 433322 24799998863
No 156
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=32.34 E-value=1.3e+02 Score=30.12 Aligned_cols=35 Identities=37% Similarity=0.327 Sum_probs=29.9
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcC-CcEEEEec
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLG-AEVIKVEQ 250 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlG-A~VIKVE~ 250 (501)
.+.|-+|+=++..-+|-.+...|+.+| ++|+-+..
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 588889999999888889999999999 67777754
No 157
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=32.31 E-value=2e+02 Score=30.21 Aligned_cols=105 Identities=12% Similarity=0.146 Sum_probs=56.2
Q ss_pred CCCcEEE-----EeC--Cccchh-HHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeC
Q psy16437 217 LSNVRIL-----DLT--RIIAGP-FCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDF 288 (501)
Q Consensus 217 L~GlrVl-----dl~--~~~agp-~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl 288 (501)
|.|++|. |++ .....+ ....+|+-+|++|.-+-|+.. .+. +... ....-+..-+.++-.++=|
T Consensus 168 l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~-~~~----~~~~---~~a~~~~~~~g~~~~~~~d- 238 (357)
T TIGR03316 168 LKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGY-HLL----PEVI---EVAKKNAAENGGKFNIVNS- 238 (357)
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcc-cCC----HHHH---HHHHHHHHHcCCeEEEEcC-
Confidence 7898886 332 112222 245678899999988877542 110 0000 0000011122333333333
Q ss_pred CChhhHHHHHHHHhhCCeEEEcC----C----------h-----------------hhhhhcCCCHHHHhhhC-CCcEEE
Q psy16437 289 KTPEGQQIIKDLAKQCDVLVENF----V----------P-----------------GKLDRLNLGYKHLSEIN-SQLIYC 336 (501)
Q Consensus 289 ~~~~g~~~~~~Li~~ADVvi~n~----~----------p-----------------g~l~~lGl~~~~L~~~n-P~lI~~ 336 (501)
+.+-+++||||...- . . .....+.++.+-|...+ |+.|+.
T Consensus 239 --------~~ea~~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~M 310 (357)
T TIGR03316 239 --------MDEAFKDADIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYM 310 (357)
T ss_pred --------HHHHhCCCCEEEECCeeccccccccchhcccchhhhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEE
Confidence 467889999999762 1 0 13345677777776666 777765
Q ss_pred EE
Q psy16437 337 SV 338 (501)
Q Consensus 337 ~~ 338 (501)
+-
T Consensus 311 Hc 312 (357)
T TIGR03316 311 HC 312 (357)
T ss_pred CC
Confidence 54
No 158
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=32.31 E-value=2.9e+02 Score=29.23 Aligned_cols=35 Identities=23% Similarity=0.106 Sum_probs=24.7
Q ss_pred CCCCcEEEEeCCc-cchhHHHHHHHHcCCcEEEEecC
Q psy16437 216 PLSNVRILDLTRI-IAGPFCTMLLADLGAEVIKVEQP 251 (501)
Q Consensus 216 pL~GlrVldl~~~-~agp~a~~~LAdlGA~VIKVE~p 251 (501)
-|.|.||+=.+.. .+- ..+++|.++|.+|+.+-.+
T Consensus 284 ~l~gkrv~i~~~~~~~~-~la~~l~elGm~v~~~~~~ 319 (410)
T cd01968 284 RLEGKKAALYTGGVKSW-SLVSALQDLGMEVVATGTQ 319 (410)
T ss_pred HhCCCEEEEEcCCchHH-HHHHHHHHCCCEEEEEecc
Confidence 4889999754432 223 3457999999999999543
No 159
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=32.25 E-value=52 Score=34.69 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=28.7
Q ss_pred cEEEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 220 lrVldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
++||=++...||-.|+..||..|.+|+-||.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~ 31 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLER 31 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEec
Confidence 4688899999999999999999999999996
No 160
>PRK05872 short chain dehydrogenase; Provisional
Probab=32.22 E-value=2.4e+02 Score=28.05 Aligned_cols=83 Identities=18% Similarity=0.105 Sum_probs=50.3
Q ss_pred CCCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCce--EEEEeCCCh
Q psy16437 215 LPLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKK--SVCVDFKTP 291 (501)
Q Consensus 215 ~pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKr--sv~lDl~~~ 291 (501)
..|+|-+||=.+. .--|-..++.|++.|++|+-+-.- .+... .....+..+.+ .+.+|+.++
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~--~~~l~-------------~~~~~l~~~~~~~~~~~Dv~d~ 69 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLE--EAELA-------------ALAAELGGDDRVLTVVADVTDL 69 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC--HHHHH-------------HHHHHhcCCCcEEEEEecCCCH
Confidence 4688878776653 233678899999999999887531 11100 11112222222 344999998
Q ss_pred hhHHHHHHHH----hhCCeEEEcCC
Q psy16437 292 EGQQIIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 292 ~g~~~~~~Li----~~ADVvi~n~~ 312 (501)
+..+.+.+-+ ..-|+||+|--
T Consensus 70 ~~v~~~~~~~~~~~g~id~vI~nAG 94 (296)
T PRK05872 70 AAMQAAAEEAVERFGGIDVVVANAG 94 (296)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCC
Confidence 8865443332 34799999864
No 161
>PRK05693 short chain dehydrogenase; Provisional
Probab=32.18 E-value=1.7e+02 Score=28.59 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=40.0
Q ss_pred hhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHHHHH----hhCCe
Q psy16437 231 GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIKDLA----KQCDV 306 (501)
Q Consensus 231 gp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~~Li----~~ADV 306 (501)
|-..++.|+..|++|+-+-.- .+.. . ...+.+-..+.+|+.+++..+.+.+-+ ...|+
T Consensus 14 G~~la~~l~~~G~~V~~~~r~--~~~~--------------~--~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 75 (274)
T PRK05693 14 GRALADAFKAAGYEVWATARK--AEDV--------------E--ALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDV 75 (274)
T ss_pred HHHHHHHHHHCCCEEEEEeCC--HHHH--------------H--HHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 667788889999999976431 1100 0 011123456789999988754443333 35799
Q ss_pred EEEcCC
Q psy16437 307 LVENFV 312 (501)
Q Consensus 307 vi~n~~ 312 (501)
||+|--
T Consensus 76 vi~~ag 81 (274)
T PRK05693 76 LINNAG 81 (274)
T ss_pred EEECCC
Confidence 998875
No 162
>PRK08265 short chain dehydrogenase; Provisional
Probab=32.14 E-value=3.9e+02 Score=25.75 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=48.3
Q ss_pred CCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 217 LSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 217 L~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
|+|-+||=.+. .--|-..++.|+..|++|+-+..-. +... ..-...+..-..+.+|+.+++..+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~-------------~~~~~~~~~~~~~~~Dl~~~~~~~ 68 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGA-------------AVAASLGERARFIATDITDDAAIE 68 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHH-------------HHHHHhCCeeEEEEecCCCHHHHH
Confidence 55656665543 2236677888999999999885311 1000 011112223356789999998865
Q ss_pred HHHHHH----hhCCeEEEcCC
Q psy16437 296 IIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 296 ~~~~Li----~~ADVvi~n~~ 312 (501)
.+.+-+ ...|+||+|--
T Consensus 69 ~~~~~~~~~~g~id~lv~~ag 89 (261)
T PRK08265 69 RAVATVVARFGRVDILVNLAC 89 (261)
T ss_pred HHHHHHHHHhCCCCEEEECCC
Confidence 444433 34799999864
No 163
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=32.05 E-value=1.9e+02 Score=28.00 Aligned_cols=85 Identities=16% Similarity=0.073 Sum_probs=48.7
Q ss_pred CCCCcEEEEeCCc-cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 216 PLSNVRILDLTRI-IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 216 pL~GlrVldl~~~-~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.++|-+||=.+.. --|-..++.|++.|++||-+.... +..+.. ...+...+..-..+.+|+.+++..
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~Dl~~~~~~ 74 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQ--ELVDKG----------LAAYRELGIEAHGYVCDVTDEDGV 74 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH--HHHHHH----------HHHHHhcCCceEEEEcCCCCHHHH
Confidence 4666555555432 336677888899999999774321 111100 001111122345678999999886
Q ss_pred HHHHHHH----hhCCeEEEcCC
Q psy16437 295 QIIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 295 ~~~~~Li----~~ADVvi~n~~ 312 (501)
+.+.+-+ ..-|+||+|.-
T Consensus 75 ~~~~~~~~~~~~~id~li~~ag 96 (265)
T PRK07097 75 QAMVSQIEKEVGVIDILVNNAG 96 (265)
T ss_pred HHHHHHHHHhCCCCCEEEECCC
Confidence 5554433 23699998864
No 164
>PRK06057 short chain dehydrogenase; Provisional
Probab=32.02 E-value=2.6e+02 Score=26.77 Aligned_cols=78 Identities=19% Similarity=0.080 Sum_probs=48.7
Q ss_pred CCCCcEEEEeCC--ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 216 PLSNVRILDLTR--IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 216 pL~GlrVldl~~--~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
.|+|-+||=.+. .| |-..++.|++.|++|+-+..-. +... ..-... +..-+.+|+.+++.
T Consensus 4 ~~~~~~vlItGasggI-G~~~a~~l~~~G~~v~~~~r~~--~~~~-------------~~~~~~--~~~~~~~D~~~~~~ 65 (255)
T PRK06057 4 RLAGRVAVITGGGSGI-GLATARRLAAEGATVVVGDIDP--EAGK-------------AAADEV--GGLFVPTDVTDEDA 65 (255)
T ss_pred cCCCCEEEEECCCchH-HHHHHHHHHHcCCEEEEEeCCH--HHHH-------------HHHHHc--CCcEEEeeCCCHHH
Confidence 367777776665 34 6677888899999998885311 1000 000111 12467899999888
Q ss_pred HHHHHHHH----hhCCeEEEcC
Q psy16437 294 QQIIKDLA----KQCDVLVENF 311 (501)
Q Consensus 294 ~~~~~~Li----~~ADVvi~n~ 311 (501)
.+.+.+-+ ...|+||+|-
T Consensus 66 ~~~~~~~~~~~~~~id~vi~~a 87 (255)
T PRK06057 66 VNALFDTAAETYGSVDIAFNNA 87 (255)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 65555444 2469999875
No 165
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=31.71 E-value=2.2e+02 Score=27.19 Aligned_cols=84 Identities=18% Similarity=0.097 Sum_probs=48.4
Q ss_pred CCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 217 LSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 217 L~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
++|-+||=.+. .--|-.+++.|++.|++|+-+.... +..... ...+...+..=..+.+|+.+++..+
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~--~~~~~~----------~~~~~~~~~~~~~~~~Dl~~~~~~~ 72 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ--DGANAV----------ADEINKAGGKAIGVAMDVTNEDAVN 72 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh--HHHHHH----------HHHHHhcCceEEEEECCCCCHHHHH
Confidence 56666775543 3446788888999999999775421 111000 0001111111234679999988765
Q ss_pred HHHHHH----hhCCeEEEcCC
Q psy16437 296 IIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 296 ~~~~Li----~~ADVvi~n~~ 312 (501)
.+.+-+ ...|+||+|--
T Consensus 73 ~~~~~~~~~~~~~d~vi~~ag 93 (262)
T PRK13394 73 AGIDKVAERFGSVDILVSNAG 93 (262)
T ss_pred HHHHHHHHHcCCCCEEEECCc
Confidence 444333 24799998764
No 166
>PLN02612 phytoene desaturase
Probab=31.45 E-value=59 Score=36.22 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=34.4
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecC
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQP 251 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p 251 (501)
.+..+.+|+-++..++|-.|+..|++.|.+|+-+|.-
T Consensus 89 ~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~ 125 (567)
T PLN02612 89 RPAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEAR 125 (567)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecC
Confidence 5777899999999999999999999999999999963
No 167
>PRK08324 short chain dehydrogenase; Validated
Probab=31.41 E-value=1.9e+02 Score=32.90 Aligned_cols=85 Identities=19% Similarity=0.085 Sum_probs=52.9
Q ss_pred CCCCCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcC--CceEEEEeCC
Q psy16437 213 PSLPLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR--NKKSVCVDFK 289 (501)
Q Consensus 213 ~~~pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nr--gKrsv~lDl~ 289 (501)
...++.|-+||=.+. .--|-.+++.|+..|+.||-+.... +.... ....++. +-..+.+|+.
T Consensus 416 ~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~--~~~~~-------------~~~~l~~~~~v~~v~~Dvt 480 (681)
T PRK08324 416 KPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDE--EAAEA-------------AAAELGGPDRALGVACDVT 480 (681)
T ss_pred CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCH--HHHHH-------------HHHHHhccCcEEEEEecCC
Confidence 346788988887763 3446678888999999999886421 11110 0111111 3346788999
Q ss_pred ChhhHHHHH-HHH---hhCCeEEEcCC
Q psy16437 290 TPEGQQIIK-DLA---KQCDVLVENFV 312 (501)
Q Consensus 290 ~~~g~~~~~-~Li---~~ADVvi~n~~ 312 (501)
+++..+.+. ++. ...|+||+|--
T Consensus 481 d~~~v~~~~~~~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 481 DEAAVQAAFEEAALAFGGVDIVVSNAG 507 (681)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 988764433 332 25799998874
No 168
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=31.31 E-value=3e+02 Score=28.64 Aligned_cols=100 Identities=11% Similarity=0.088 Sum_probs=56.2
Q ss_pred CCCCcEEEEeCCcc---chhHHHHHHH-HcCCcEEEEecCCCCCcccccCCCCCCCCCcchhh--hhhcCCceEEEEeCC
Q psy16437 216 PLSNVRILDLTRII---AGPFCTMLLA-DLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYF--TCVNRNKKSVCVDFK 289 (501)
Q Consensus 216 pL~GlrVldl~~~~---agp~a~~~LA-dlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f--~~~nrgKrsv~lDl~ 289 (501)
.|+|++|.=++..- ..-....+|+ -+|++|.-+-|++.- ++ ..+. ...+.++-.++=|
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~-------~~-------~~~~~~~~~~g~~~~~~~d-- 219 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELA-------MP-------DYVISDIENAGHKITITDQ-- 219 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCcccc-------CC-------HHHHHHHHHcCCeEEEEcC--
Confidence 69999999877742 1223334456 449999999876521 10 0111 1111223233333
Q ss_pred ChhhHHHHHHHHhhCCeEEEc------CC-hhh---h-hhcCCCHHHHhh-hCCCcEEEEE
Q psy16437 290 TPEGQQIIKDLAKQCDVLVEN------FV-PGK---L-DRLNLGYKHLSE-INSQLIYCSV 338 (501)
Q Consensus 290 ~~~g~~~~~~Li~~ADVvi~n------~~-pg~---l-~~lGl~~~~L~~-~nP~lI~~~~ 338 (501)
+.+-+++||||++. +. +.. + ..+.++.+-+.+ .+|+.|+.+-
T Consensus 220 -------~~ea~~~aDvvyt~~~q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHc 273 (338)
T PRK08192 220 -------LEGNLDKADILYLTRIQEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHP 273 (338)
T ss_pred -------HHHHHccCCEEEEcCcccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECC
Confidence 45788999999983 11 111 1 337777777743 7888777643
No 169
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=31.09 E-value=2.5e+02 Score=29.96 Aligned_cols=97 Identities=14% Similarity=0.196 Sum_probs=58.4
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
.+.|.+|+=++..-.|-.+.+.|...|+..|.|-... . .|. ..+.....+ . .+++ +
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~-~--~ra------------~~la~~~g~-~--~~~~------~ 234 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT-L--ERA------------EELAEEFGG-E--AIPL------D 234 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC-H--HHH------------HHHHHHcCC-c--EeeH------H
Confidence 5899999999998778888899999998544443322 1 111 112111111 1 2222 2
Q ss_pred HHHHHHhhCCeEEEcCC-hhhhhhcCCCHHHHhhh-----CCCcEEEEEee
Q psy16437 296 IIKDLAKQCDVLVENFV-PGKLDRLNLGYKHLSEI-----NSQLIYCSVTG 340 (501)
Q Consensus 296 ~~~~Li~~ADVvi~n~~-pg~l~~lGl~~~~L~~~-----nP~lI~~~~s~ 340 (501)
.+.+.+..+||||+.-. |..+ ++.+.+... +..+++++++-
T Consensus 235 ~~~~~l~~aDvVI~aT~s~~~~----i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 235 ELPEALAEADIVISSTGAPHPI----IGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred HHHHHhccCCEEEECCCCCCcE----EcHHHHHHHHhhccCCCeEEEEeCC
Confidence 35677889999997754 2222 345555442 45678889863
No 170
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=30.67 E-value=63 Score=33.31 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=28.4
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
.|+.|.+|||++..- | .-+..|+..|++|+=||.
T Consensus 128 ~~~~g~~ILDIGCG~-G-~~s~~La~~g~~V~GID~ 161 (322)
T PLN02396 128 KPFEGLKFIDIGCGG-G-LLSEPLARMGATVTGVDA 161 (322)
T ss_pred cCCCCCEEEEeeCCC-C-HHHHHHHHcCCEEEEEeC
Confidence 478999999999965 3 346788999999999985
No 171
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=30.59 E-value=1.8e+02 Score=28.09 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=48.4
Q ss_pred CCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 216 PLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 216 pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.|+|-+||=.+. .--|-..++.|+..|++|+-+.... .+.. .......+..=..+.+|+.+++..
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~-------------~~~~~~~~~~~~~~~~Dl~~~~~~ 70 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APET-------------QAQVEALGRKFHFITADLIQQKDI 70 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHH-------------HHHHHHcCCeEEEEEeCCCCHHHH
Confidence 366766665443 1226677889999999998764211 0000 001111222224578999999987
Q ss_pred HHHHHHH----hhCCeEEEcCC
Q psy16437 295 QIIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 295 ~~~~~Li----~~ADVvi~n~~ 312 (501)
+.+.+-+ ..-|+||+|--
T Consensus 71 ~~~~~~~~~~~g~iD~lv~~ag 92 (251)
T PRK12481 71 DSIVSQAVEVMGHIDILINNAG 92 (251)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 5554433 34799998863
No 172
>PRK06114 short chain dehydrogenase; Provisional
Probab=30.45 E-value=3e+02 Score=26.34 Aligned_cols=86 Identities=13% Similarity=0.047 Sum_probs=48.3
Q ss_pred CCCCcEEEEeCCc-cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 216 PLSNVRILDLTRI-IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 216 pL~GlrVldl~~~-~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.|+|-+||=.+.. -=|-..++.|+..|++|+-+.... .+..+.. .......+..=..+.+|+.+++..
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~-~~~~~~~----------~~~l~~~~~~~~~~~~D~~~~~~i 73 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRT-DDGLAET----------AEHIEAAGRRAIQIAADVTSKADL 73 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCc-chHHHHH----------HHHHHhcCCceEEEEcCCCCHHHH
Confidence 3666666654431 226677888899999999876422 1111100 000111111123577899998886
Q ss_pred HHHHHHHhh----CCeEEEcCC
Q psy16437 295 QIIKDLAKQ----CDVLVENFV 312 (501)
Q Consensus 295 ~~~~~Li~~----ADVvi~n~~ 312 (501)
+.+.+-+.. -|+||.|--
T Consensus 74 ~~~~~~~~~~~g~id~li~~ag 95 (254)
T PRK06114 74 RAAVARTEAELGALTLAVNAAG 95 (254)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 554444332 499998874
No 173
>PRK06483 dihydromonapterin reductase; Provisional
Probab=30.33 E-value=2.1e+02 Score=27.01 Aligned_cols=65 Identities=18% Similarity=0.103 Sum_probs=41.1
Q ss_pred hhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHHHHHh----hCCe
Q psy16437 231 GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIKDLAK----QCDV 306 (501)
Q Consensus 231 gp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~~Li~----~ADV 306 (501)
|-..++.|++.|++||-+.... +.. .-.....|-..+.+|+.+++..+.+.+-+. .-|+
T Consensus 15 G~~ia~~l~~~G~~V~~~~r~~--~~~---------------~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 77 (236)
T PRK06483 15 GLALAWHLLAQGQPVIVSYRTH--YPA---------------IDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRA 77 (236)
T ss_pred HHHHHHHHHHCCCeEEEEeCCc--hhH---------------HHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccE
Confidence 6677888999999999875421 100 000011234678899999888655444432 4799
Q ss_pred EEEcCC
Q psy16437 307 LVENFV 312 (501)
Q Consensus 307 vi~n~~ 312 (501)
||+|--
T Consensus 78 lv~~ag 83 (236)
T PRK06483 78 IIHNAS 83 (236)
T ss_pred EEECCc
Confidence 998863
No 174
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.28 E-value=3e+02 Score=26.65 Aligned_cols=83 Identities=10% Similarity=-0.038 Sum_probs=50.1
Q ss_pred CCCCcEEEEeCC---ccchhHHHHHHHHcCCcEEEEecCCC-CCcccccCCCCCCCCCcchhhhhhcCC-ceEEEEeCCC
Q psy16437 216 PLSNVRILDLTR---IIAGPFCTMLLADLGAEVIKVEQPVT-GDECRKWGPPFLNNTELSTYFTCVNRN-KKSVCVDFKT 290 (501)
Q Consensus 216 pL~GlrVldl~~---~~agp~a~~~LAdlGA~VIKVE~p~~-gD~~R~~~~~~~~~~~~~~~f~~~nrg-Krsv~lDl~~ 290 (501)
.|+|-+||=.+. .-=|-..++.|++.|+.||-+-.-.+ .+.. ...-...+.+ -..+.+|+.+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~-------------~~~~~~~~~~~~~~~~~Dv~d 70 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEV-------------RELADTLEGQESLLLPCDVTS 70 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHH-------------HHHHHHcCCCceEEEecCCCC
Confidence 467767776663 13377789999999999997642110 0000 0111112212 2467899999
Q ss_pred hhhHHHHHHHHh----hCCeEEEcC
Q psy16437 291 PEGQQIIKDLAK----QCDVLVENF 311 (501)
Q Consensus 291 ~~g~~~~~~Li~----~ADVvi~n~ 311 (501)
++..+.+.+-+. .-|+||.|-
T Consensus 71 ~~~v~~~~~~~~~~~g~ld~lv~na 95 (257)
T PRK08594 71 DEEITACFETIKEEVGVIHGVAHCI 95 (257)
T ss_pred HHHHHHHHHHHHHhCCCccEEEECc
Confidence 998866555443 379999885
No 175
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=30.26 E-value=67 Score=34.44 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=30.5
Q ss_pred CCCcE-EEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 217 LSNVR-ILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 217 L~Glr-Vldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
+.++| |+|..+..+++++.++|..+|++|+-|..
T Consensus 166 ~~~lkIvvd~~~G~~~~~~~~ll~~lG~~v~~i~~ 200 (441)
T cd05805 166 KSGLKVVIDYAYGVAGIVLPGLLSRLGCDVVILNA 200 (441)
T ss_pred hcCCeEEEECCCchHHHHHHHHHHHcCCEEEEEec
Confidence 56888 58999999999999999999999998864
No 176
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=30.11 E-value=3.2e+02 Score=27.73 Aligned_cols=32 Identities=25% Similarity=0.086 Sum_probs=25.2
Q ss_pred CCCCcEEEEeCC---ccchhHHHHHHHHcCCcEEE
Q psy16437 216 PLSNVRILDLTR---IIAGPFCTMLLADLGAEVIK 247 (501)
Q Consensus 216 pL~GlrVldl~~---~~agp~a~~~LAdlGA~VIK 247 (501)
.|.|-+||=-+. .==|-.+++.||+.||.||-
T Consensus 6 ~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 6 DLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV 40 (303)
T ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence 488888876654 22277889999999999987
No 177
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=30.09 E-value=2.6e+02 Score=31.95 Aligned_cols=97 Identities=16% Similarity=0.132 Sum_probs=56.6
Q ss_pred hhhcccc-cCCCCCCCCCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhh-
Q psy16437 201 FYSLDLA-LSSENPSLPLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCV- 277 (501)
Q Consensus 201 ~~~~~~~-~~~~~~~~pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~- 277 (501)
||..... ...++...+|+|-+||=.+. .--|-..++.|++.|++|+-+.... +.... ....+
T Consensus 395 yw~~e~~kl~~~~~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~--~~~~~-------------~~~~l~ 459 (676)
T TIGR02632 395 YWPLEEAKLRRMPKEKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNL--EAAEA-------------VAAEIN 459 (676)
T ss_pred hhhhhHHhhccCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCH--HHHHH-------------HHHHHH
Confidence 7865432 22344457899987776654 2336677888899999999886421 11100 01111
Q ss_pred ---cCC-ceEEEEeCCChhhHHHHH-HHHh---hCCeEEEcCC
Q psy16437 278 ---NRN-KKSVCVDFKTPEGQQIIK-DLAK---QCDVLVENFV 312 (501)
Q Consensus 278 ---nrg-Krsv~lDl~~~~g~~~~~-~Li~---~ADVvi~n~~ 312 (501)
..+ -..+.+|+++++..+.+. +..+ ..|+||+|--
T Consensus 460 ~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g~iDilV~nAG 502 (676)
T TIGR02632 460 GQFGAGRAVALKMDVTDEQAVKAAFADVALAYGGVDIVVNNAG 502 (676)
T ss_pred hhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcCCCcEEEECCC
Confidence 111 235789999988764333 3322 5799998875
No 178
>KOG3962|consensus
Probab=30.06 E-value=24 Score=34.28 Aligned_cols=13 Identities=0% Similarity=0.128 Sum_probs=8.6
Q ss_pred CCCCCcEEEEeCC
Q psy16437 215 LPLSNVRILDLTR 227 (501)
Q Consensus 215 ~pL~GlrVldl~~ 227 (501)
..++|--.++++.
T Consensus 44 ~~~~g~v~ie~~~ 56 (246)
T KOG3962|consen 44 NDIEGTVAIEIDD 56 (246)
T ss_pred ceeeEEEEEEecC
Confidence 4677866666665
No 179
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=29.98 E-value=73 Score=34.49 Aligned_cols=39 Identities=33% Similarity=0.375 Sum_probs=32.8
Q ss_pred CCCcE-EEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcc
Q psy16437 217 LSNVR-ILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDEC 257 (501)
Q Consensus 217 L~Glr-Vldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~ 257 (501)
++++| |||..+..+++++..+|..||++|+-+... +|+.
T Consensus 186 ~~~~kVvvD~~nG~~~~~~~~ll~~LG~~v~~l~~~--~dg~ 225 (465)
T PRK14317 186 LQGVKIVLDLAWGAAVACAPEVFKALGAEVICLHDQ--PDGD 225 (465)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEecc--cCCC
Confidence 56888 679999999999999999999999988542 5554
No 180
>KOG1416|consensus
Probab=29.78 E-value=55 Score=35.05 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=33.6
Q ss_pred CCCChHHHHHh--hcCCChHHHHHHhhhchhhh--hhhhccCCCCchhhHHHHHHHHHHHHHHHHHh
Q psy16437 111 LGEHTDYVLKD--LLNYDETTIAKLKEKKILGL--IERLTKNADPVCTREKAKKKKKKKKKKKKKKK 173 (501)
Q Consensus 111 lGeht~eVL~e--llG~s~~ei~~L~~~Gvv~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (501)
-+.++.+|..+ ---++.++|++|+++|+=+. ....+.+..+--.+-.++-+|=.+|||||...
T Consensus 99 ~s~dNr~ivd~~kaQ~Lt~EeI~~mr~eg~~g~EiI~kLienSkTF~~KT~fSQeKYv~rK~kKy~~ 165 (475)
T KOG1416|consen 99 SSADNREIVDDGKAQKLTQEEIEEMRQEGLSGEEIIEKLIENSKTFHNKTVFSQEKYVLRKKKKYAK 165 (475)
T ss_pred cCCCchhhhcccccccCCHHHHHHHHHhccCHHHHHHHHHhcCcccccchhhhHHHHHHHHhhhhhh
Confidence 45677777643 01367899999999876321 12222222222223345555555566665544
No 181
>PRK05867 short chain dehydrogenase; Provisional
Probab=29.57 E-value=1.9e+02 Score=27.76 Aligned_cols=85 Identities=19% Similarity=0.155 Sum_probs=49.7
Q ss_pred CCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 216 PLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 216 pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.|+|-+||=.+. .--|-..++.|++.|++|+-+.... +..... .......+..-..+.+|+.+++..
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~----------~~~l~~~~~~~~~~~~D~~~~~~~ 73 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHL--DALEKL----------ADEIGTSGGKVVPVCCDVSQHQQV 73 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH--HHHHHH----------HHHHHhcCCeEEEEEccCCCHHHH
Confidence 466766666553 2236788899999999998875321 111000 000111122224677999999886
Q ss_pred HHHHHHH----hhCCeEEEcCC
Q psy16437 295 QIIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 295 ~~~~~Li----~~ADVvi~n~~ 312 (501)
+.+.+-+ ...|+||+|--
T Consensus 74 ~~~~~~~~~~~g~id~lv~~ag 95 (253)
T PRK05867 74 TSMLDQVTAELGGIDIAVCNAG 95 (253)
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 5443322 36899999864
No 182
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=29.47 E-value=91 Score=31.28 Aligned_cols=66 Identities=26% Similarity=0.295 Sum_probs=44.8
Q ss_pred hhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcC----CceEEEEeCCChhhHHHHHHHHhh---
Q psy16437 231 GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNR----NKKSVCVDFKTPEGQQIIKDLAKQ--- 303 (501)
Q Consensus 231 gp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nr----gKrsv~lDl~~~~g~~~~~~Li~~--- 303 (501)
|-.-++.||.-|.+||-|-.- -|.+... ...+.. -=.-+.+||.+++..+.+.+-+..
T Consensus 19 G~~~A~~lA~~g~~liLvaR~--~~kL~~l-------------a~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~ 83 (265)
T COG0300 19 GAELAKQLARRGYNLILVARR--EDKLEAL-------------AKELEDKTGVEVEVIPADLSDPEALERLEDELKERGG 83 (265)
T ss_pred HHHHHHHHHHCCCEEEEEeCc--HHHHHHH-------------HHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCC
Confidence 667799999999999999753 2322221 111111 124788999999999887765444
Q ss_pred -CCeEEEcC
Q psy16437 304 -CDVLVENF 311 (501)
Q Consensus 304 -ADVvi~n~ 311 (501)
-||+|.|-
T Consensus 84 ~IdvLVNNA 92 (265)
T COG0300 84 PIDVLVNNA 92 (265)
T ss_pred cccEEEECC
Confidence 68888775
No 183
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=29.44 E-value=2e+02 Score=27.64 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=49.7
Q ss_pred CCCCcEEEEeCC--ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 216 PLSNVRILDLTR--IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 216 pL~GlrVldl~~--~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
.|.|-+||=.+. .| |-..++.|++.|+.|+-+-... ..... .......+..-..+.+|+.+++.
T Consensus 12 ~l~~k~vlItGas~gI-G~~ia~~l~~~G~~v~~~~~~~---~~~~~----------~~~~~~~~~~~~~~~~D~~~~~~ 77 (258)
T PRK06935 12 SLDGKVAIVTGGNTGL-GQGYAVALAKAGADIIITTHGT---NWDET----------RRLIEKEGRKVTFVQVDLTKPES 77 (258)
T ss_pred cCCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEeCCc---HHHHH----------HHHHHhcCCceEEEEcCCCCHHH
Confidence 477877766554 34 6677888999999999875421 10000 01112222223567899999888
Q ss_pred HHHHHH-HHh---hCCeEEEcCC
Q psy16437 294 QQIIKD-LAK---QCDVLVENFV 312 (501)
Q Consensus 294 ~~~~~~-Li~---~ADVvi~n~~ 312 (501)
.+.+.+ +.+ ..|++|+|--
T Consensus 78 i~~~~~~~~~~~g~id~li~~ag 100 (258)
T PRK06935 78 AEKVVKEALEEFGKIDILVNNAG 100 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 654333 322 4699998864
No 184
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=29.25 E-value=30 Score=32.44 Aligned_cols=8 Identities=0% Similarity=-0.276 Sum_probs=3.3
Q ss_pred HHHHHHHh
Q psy16437 31 KEIEAKTM 38 (501)
Q Consensus 31 ~~i~~~f~ 38 (501)
.....++.
T Consensus 29 ~~y~kf~~ 36 (178)
T PF10278_consen 29 HSYNKFCG 36 (178)
T ss_pred HHHHHHhC
Confidence 33444444
No 185
>PLN02489 homocysteine S-methyltransferase
Probab=28.72 E-value=1.6e+02 Score=30.58 Aligned_cols=41 Identities=10% Similarity=0.094 Sum_probs=29.6
Q ss_pred EEeCCChhhHHHHHH--HHhhCCeEEEcCC---hhhhhhcCCCHHH
Q psy16437 285 CVDFKTPEGQQIIKD--LAKQCDVLVENFV---PGKLDRLNLGYKH 325 (501)
Q Consensus 285 ~lDl~~~~g~~~~~~--Li~~ADVvi~n~~---pg~l~~lGl~~~~ 325 (501)
.+.+.+|+-...+++ |-+.|||+.+|-= +..+.+.|++.++
T Consensus 48 ~~ll~~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~g~~~~~ 93 (335)
T PLN02489 48 KCLITSPHLIRKVHLDYLEAGADIIITASYQATIQGFESRGLSREE 93 (335)
T ss_pred hhhcCCHHHHHHHHHHHHHhCCCEEEecccccCHHHHHHcCCCHHH
Confidence 355677877777777 7788999987754 4557778887443
No 186
>PF05874 PBAN: Pheromone biosynthesis activating neuropeptide (PBAN); InterPro: IPR008730 This family consists of several moth pheromone biosynthesis activating neuropeptide (PBAN) sequences. Female moths produce and release species specific sex pheromones to attract males for mating. Pheromone biosynthesis is hormonally regulated by the Pheromone Biosynthesis Activating Neuropeptide (PBAN) which is biosynthesised in the subesophageal ganglion (SOG) [].; GO: 0005184 neuropeptide hormone activity, 0007218 neuropeptide signaling pathway, 0042811 pheromone biosynthetic process
Probab=28.71 E-value=30 Score=32.16 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=27.9
Q ss_pred hhhhcCCceEEEEeCCChhhHHHHHHHHhhCCeEEEcC
Q psy16437 274 FTCVNRNKKSVCVDFKTPEGQQIIKDLAKQCDVLVENF 311 (501)
Q Consensus 274 f~~~nrgKrsv~lDl~~~~g~~~~~~Li~~ADVvi~n~ 311 (501)
|-.---||||+.+ .+++.|..|.+|++.||.+=--|
T Consensus 42 WFGPRLGKRsl~~--s~ednrq~f~rllEaaDalk~YY 77 (195)
T PF05874_consen 42 WFGPRLGKRSLRL--STEDNRQAFFRLLEAADALKYYY 77 (195)
T ss_pred eeccccccccccc--cccccHHHHHHHHHHhhcchhhh
Confidence 3344569999876 56778999999999999876444
No 187
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.57 E-value=2.3e+02 Score=27.97 Aligned_cols=82 Identities=13% Similarity=0.056 Sum_probs=47.4
Q ss_pred CCCcEEEEeCC----ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChh
Q psy16437 217 LSNVRILDLTR----IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPE 292 (501)
Q Consensus 217 L~GlrVldl~~----~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~ 292 (501)
|+|-.||=.+. .| |-..++.|+..|+.||-+-.-. ..... .......++ ++..+.+|+.+++
T Consensus 3 l~~k~~lItGas~~~GI-G~aiA~~la~~G~~Vil~~r~~---~~~~~---------~~~~~~~~~-~~~~~~~Dv~d~~ 68 (274)
T PRK08415 3 MKGKKGLIVGVANNKSI-AYGIAKACFEQGAELAFTYLNE---ALKKR---------VEPIAQELG-SDYVYELDVSKPE 68 (274)
T ss_pred cCCcEEEEECCCCCCCH-HHHHHHHHHHCCCEEEEEecCH---HHHHH---------HHHHHHhcC-CceEEEecCCCHH
Confidence 44544544442 23 6678999999999998663210 00000 001111122 2267889999998
Q ss_pred hHHHHHHHH----hhCCeEEEcCC
Q psy16437 293 GQQIIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 293 g~~~~~~Li----~~ADVvi~n~~ 312 (501)
..+.+.+-+ ..-|+||.|--
T Consensus 69 ~v~~~~~~i~~~~g~iDilVnnAG 92 (274)
T PRK08415 69 HFKSLAESLKKDLGKIDFIVHSVA 92 (274)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCc
Confidence 876555444 34699999863
No 188
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=28.54 E-value=3.1e+02 Score=27.98 Aligned_cols=88 Identities=16% Similarity=-0.002 Sum_probs=53.4
Q ss_pred CCCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
.-|++.+||=.+. ..-|....+.|...|.+|+=+.....+.. ... .... ..........=+.+..|+++.
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~-~~~-~~~~-----~~~~~~~~~~~~~~~~Di~d~-- 81 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQ-HNL-DDVR-----TSVSEEQWSRFIFIQGDIRKF-- 81 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcch-hhh-hhhh-----hccccccCCceEEEEccCCCH--
Confidence 4578888888874 56688888888889999998864321100 000 0000 000000001124577899874
Q ss_pred HHHHHHHHhhCCeEEEcCC
Q psy16437 294 QQIIKDLAKQCDVLVENFV 312 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~~ 312 (501)
+.+.++++.+|+||+--.
T Consensus 82 -~~l~~~~~~~d~ViHlAa 99 (348)
T PRK15181 82 -TDCQKACKNVDYVLHQAA 99 (348)
T ss_pred -HHHHHHhhCCCEEEECcc
Confidence 457888899999998764
No 189
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=28.54 E-value=40 Score=34.67 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=18.5
Q ss_pred EeCCChhhHHHHHHHHhhCCeEEEcCChh
Q psy16437 286 VDFKTPEGQQIIKDLAKQCDVLVENFVPG 314 (501)
Q Consensus 286 lDl~~~~g~~~~~~Li~~ADVvi~n~~pg 314 (501)
-|++|+|-. +|+.+|||||+|=+=.
T Consensus 122 GDFrS~E~i----~Ll~eADIVVTNPPFS 146 (336)
T PF13651_consen 122 GDFRSDECI----ELLKEADIVVTNPPFS 146 (336)
T ss_pred CCcCcHHHH----HHHhcCCEEEeCCCcH
Confidence 467777654 5777999999996543
No 190
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.34 E-value=2.1e+02 Score=27.13 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=48.5
Q ss_pred CCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCc--eEEEEeCCChhh
Q psy16437 217 LSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNK--KSVCVDFKTPEG 293 (501)
Q Consensus 217 L~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgK--rsv~lDl~~~~g 293 (501)
|.|-+||=.+. .--|-..++.|+..|+.||-+.... +..+. ..-...+.+. ..+.+|+.+++.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~--~~~~~------------~~~~~~~~~~~~~~~~~D~~~~~~ 68 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ--EKLEE------------AVAECGALGTEVRGYAANVTDEED 68 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHH------------HHHHHHhcCCceEEEEcCCCCHHH
Confidence 56777776653 3336778888999999998886421 11100 0001112233 357899998877
Q ss_pred HHHHHHHH----hhCCeEEEcCC
Q psy16437 294 QQIIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 294 ~~~~~~Li----~~ADVvi~n~~ 312 (501)
.+.+.+-+ ...|+||+|.-
T Consensus 69 ~~~~~~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 69 VEATFAQIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 65444433 23699998863
No 191
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=28.25 E-value=2.1e+02 Score=29.13 Aligned_cols=98 Identities=12% Similarity=0.104 Sum_probs=55.4
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
.+.|.+|+=++..--|-.+.+.|...|+..|.|-... +.|. .-+...- |-. ..++ +
T Consensus 175 ~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~---~~ra------------~~la~~~-g~~--~~~~------~ 230 (311)
T cd05213 175 NLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRT---YERA------------EELAKEL-GGN--AVPL------D 230 (311)
T ss_pred CccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC---HHHH------------HHHHHHc-CCe--EEeH------H
Confidence 3899999999987667777888888887766654332 1111 0111111 111 2222 1
Q ss_pred HHHHHHhhCCeEEEcCChhhhhhcCCCHHHH-hhh-CCCcEEEEEee
Q psy16437 296 IIKDLAKQCDVLVENFVPGKLDRLNLGYKHL-SEI-NSQLIYCSVTG 340 (501)
Q Consensus 296 ~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L-~~~-nP~lI~~~~s~ 340 (501)
-+.+.+..+||||+......... -.+.+ ... ..++++++++=
T Consensus 231 ~~~~~l~~aDvVi~at~~~~~~~---~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 231 ELLELLNEADVVISATGAPHYAK---IVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred HHHHHHhcCCEEEECCCCCchHH---HHHHHHhhCCCCCeEEEEeCC
Confidence 35677889999998877543200 01111 112 14678888873
No 192
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=28.13 E-value=41 Score=33.55 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=19.1
Q ss_pred HHHHHHHHcCCcEEEEecCCCC
Q psy16437 233 FCTMLLADLGAEVIKVEQPVTG 254 (501)
Q Consensus 233 ~a~~~LAdlGA~VIKVE~p~~g 254 (501)
-+.+.|.|-||||.|||-|.++
T Consensus 190 ~a~k~fsd~GadvlKvevPvyv 211 (306)
T COG3684 190 EAMKEFSDSGADVLKVEVPVYV 211 (306)
T ss_pred HHHHHhccCCCceEEeecceec
Confidence 5789999999999999998743
No 193
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=28.10 E-value=1.6e+02 Score=31.51 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=29.1
Q ss_pred CCcEE-EEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 218 SNVRI-LDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 218 ~GlrV-ldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
+++|| +|..+..++.+...+|..+|++|+-+..
T Consensus 162 ~~lkVvvd~~~G~~~~~~~~ll~~lG~~v~~i~~ 195 (443)
T cd03089 162 RPLKVVVDAGNGAAGPIAPQLLEALGCEVIPLFC 195 (443)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCEEEEecC
Confidence 68875 5899999999999999999999998864
No 194
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=27.86 E-value=2e+02 Score=27.53 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=47.2
Q ss_pred CCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 216 PLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 216 pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.|+|-+||=.+. .--|-..++.|++.|++|+-+.... ..... .......+..-..+.+|+.+++..
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~---~~~~~----------~~~~~~~~~~~~~~~~D~~~~~~~ 71 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE---LVHEV----------AAELRAAGGEALALTADLETYAGA 71 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch---HHHHH----------HHHHHhcCCeEEEEEEeCCCHHHH
Confidence 466666655443 2236678888999999999775321 00000 000111111224578999998775
Q ss_pred HH-HHHHHh---hCCeEEEcCC
Q psy16437 295 QI-IKDLAK---QCDVLVENFV 312 (501)
Q Consensus 295 ~~-~~~Li~---~ADVvi~n~~ 312 (501)
+. +.++.+ ..|+||+|--
T Consensus 72 ~~~~~~~~~~~~~id~lv~nAg 93 (260)
T PRK12823 72 QAAMAAAVEAFGRIDVLINNVG 93 (260)
T ss_pred HHHHHHHHHHcCCCeEEEECCc
Confidence 43 333332 4799999863
No 195
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=27.85 E-value=65 Score=33.79 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=25.9
Q ss_pred EEEeCCccchhHHHHHHHHcCCcEEEEecCC
Q psy16437 222 ILDLTRIIAGPFCTMLLADLGAEVIKVEQPV 252 (501)
Q Consensus 222 Vldl~~~~agp~a~~~LAdlGA~VIKVE~p~ 252 (501)
||=++..+||=.|+..+++.|+.||-||.-.
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~V~lvek~~ 32 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAKVLLVEKGP 32 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT-EEEEESSS
T ss_pred EEEECCCHHHHHHHHHHhhhcCeEEEEEeec
Confidence 6778899999999999999999999999743
No 196
>PRK12367 short chain dehydrogenase; Provisional
Probab=27.30 E-value=3.2e+02 Score=26.51 Aligned_cols=77 Identities=17% Similarity=0.057 Sum_probs=48.3
Q ss_pred CCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 216 PLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 216 pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
-|.|-+||-.+. .--|-..++.|++.|++||-+.... .+... .........+.+|+.+++..
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~-~~~~~----------------~~~~~~~~~~~~D~~~~~~~ 73 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK-INNSE----------------SNDESPNEWIKWECGKEESL 73 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc-hhhhh----------------hhccCCCeEEEeeCCCHHHH
Confidence 367777776553 2235677888899999999875321 00000 00111235688999988764
Q ss_pred HHHHHHHhhCCeEEEcCC
Q psy16437 295 QIIKDLAKQCDVLVENFV 312 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~ 312 (501)
.+.+...|+||+|--
T Consensus 74 ---~~~~~~iDilVnnAG 88 (245)
T PRK12367 74 ---DKQLASLDVLILNHG 88 (245)
T ss_pred ---HHhcCCCCEEEECCc
Confidence 456678999999864
No 197
>PRK08005 epimerase; Validated
Probab=27.27 E-value=2.4e+02 Score=27.18 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=51.1
Q ss_pred HHHHHHcCCcEEEE--ecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHHHHHhhCCeEE----
Q psy16437 235 TMLLADLGAEVIKV--EQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIKDLAKQCDVLV---- 308 (501)
Q Consensus 235 ~~~LAdlGA~VIKV--E~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~~Li~~ADVvi---- 308 (501)
-..|++.||+-|-| |.. .++.|. .-+..-+--|-+|+|+..+| .+.+..++...|.|+
T Consensus 74 i~~~~~~gad~It~H~Ea~--~~~~~~------------l~~Ik~~G~k~GlAlnP~Tp--~~~i~~~l~~vD~VlvMsV 137 (210)
T PRK08005 74 LPWLAAIRPGWIFIHAESV--QNPSEI------------LADIRAIGAKAGLALNPATP--LLPYRYLALQLDALMIMTS 137 (210)
T ss_pred HHHHHHhCCCEEEEcccCc--cCHHHH------------HHHHHHcCCcEEEEECCCCC--HHHHHHHHHhcCEEEEEEe
Confidence 46789999998876 532 233222 12344455688999999875 456889999999665
Q ss_pred ------EcCChhhhhhcCCCHHHHhhhCCC
Q psy16437 309 ------ENFVPGKLDRLNLGYKHLSEINSQ 332 (501)
Q Consensus 309 ------~n~~pg~l~~lGl~~~~L~~~nP~ 332 (501)
..|.|.+++|. .+|++..+.
T Consensus 138 ~PGf~GQ~f~~~~~~KI----~~l~~~~~~ 163 (210)
T PRK08005 138 EPDGRGQQFIAAMCEKV----SQSREHFPA 163 (210)
T ss_pred cCCCccceecHHHHHHH----HHHHHhccc
Confidence 44555566664 456666554
No 198
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=27.15 E-value=3.3e+02 Score=32.36 Aligned_cols=114 Identities=15% Similarity=0.099 Sum_probs=61.2
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
-|+|-||+=++...-.=..+++|.++|.+|+.+-... .+. .........-++..+.++-.+...
T Consensus 317 ~L~GKrv~i~~g~~~~~~la~~l~elGmevv~~g~~~-~~~-------------~d~~~~~~~~~~~~~vi~~~d~~e-- 380 (917)
T PRK14477 317 RLEGKRVVLFTGGVKTWSMVNALRELGVEVLAAGTQN-STL-------------EDFARMKALMHKDAHIIEDTSTAG-- 380 (917)
T ss_pred HccCCEEEEECCCchHHHHHHHHHHCCCEEEEEcCCC-CCH-------------HHHHHHHHhcCCCCEEEECCCHHH--
Confidence 5899999876643222245788899999998854322 110 000011011122333444333333
Q ss_pred HHHHHHh--hCCeEEEcCChhhhh-hcCCCHHHHhhhCCCcEEEEEeecCCCCCCCCCCcchhHHhh
Q psy16437 296 IIKDLAK--QCDVLVENFVPGKLD-RLNLGYKHLSEINSQLIYCSVTGFGSKGPYKDRPGYDIIAAS 359 (501)
Q Consensus 296 ~~~~Li~--~ADVvi~n~~pg~l~-~lGl~~~~L~~~nP~lI~~~~s~fG~~Gp~~~~~g~d~~~~A 359 (501)
+.++++ ..|++|.|.+...+. ++|+ =++++.++ +..|+..+.|.-.++..
T Consensus 381 -l~~~i~~~~pDLlig~~~~~~~a~k~gi------------P~~~~~~~-~~~p~~GY~G~~~l~~~ 433 (917)
T PRK14477 381 -LLRVMREKMPDLIVAGGKTKFLALKTRT------------PFLDINHG-RSHPYAGYEGMVTFARQ 433 (917)
T ss_pred -HHHHHHhcCCCEEEecCchhhHHHHcCC------------CeEEccCC-ccCCccchhhHHHHHHH
Confidence 333333 699999988776654 4555 23344443 45677766666555543
No 199
>PRK07041 short chain dehydrogenase; Provisional
Probab=27.13 E-value=1.6e+02 Score=27.55 Aligned_cols=67 Identities=15% Similarity=0.090 Sum_probs=42.2
Q ss_pred hhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhh--cCCceEEEEeCCChhhHHHHHHHHhhCCeEE
Q psy16437 231 GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCV--NRNKKSVCVDFKTPEGQQIIKDLAKQCDVLV 308 (501)
Q Consensus 231 gp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~--nrgKrsv~lDl~~~~g~~~~~~Li~~ADVvi 308 (501)
|-..++.|++.|++|+-+.... +... ...... +.+-..+.+|+.+++..+.+.+-+...|+||
T Consensus 10 G~~~a~~l~~~G~~v~~~~r~~--~~~~-------------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li 74 (230)
T PRK07041 10 GLALARAFAAEGARVTIASRSR--DRLA-------------AAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVV 74 (230)
T ss_pred HHHHHHHHHHCCCEEEEEeCCH--HHHH-------------HHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEE
Confidence 4456778889999999886531 1100 111112 2234567899999988655555445579999
Q ss_pred EcCC
Q psy16437 309 ENFV 312 (501)
Q Consensus 309 ~n~~ 312 (501)
+|.-
T Consensus 75 ~~ag 78 (230)
T PRK07041 75 ITAA 78 (230)
T ss_pred ECCC
Confidence 8864
No 200
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=27.13 E-value=1.4e+02 Score=27.65 Aligned_cols=26 Identities=38% Similarity=0.560 Sum_probs=20.8
Q ss_pred EEEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 221 RILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 221 rVldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
+|.|-. +++.+..|.++|.+|+.+.-
T Consensus 15 ~i~d~n----~~~l~~~L~~~G~~v~~~~~ 40 (170)
T cd00885 15 QIVDTN----AAFLAKELAELGIEVYRVTV 40 (170)
T ss_pred eEEEhH----HHHHHHHHHHCCCEEEEEEE
Confidence 455543 78999999999999988764
No 201
>PRK06196 oxidoreductase; Provisional
Probab=27.04 E-value=2.9e+02 Score=27.64 Aligned_cols=82 Identities=22% Similarity=0.178 Sum_probs=49.8
Q ss_pred CCCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
..|.|-+||=.+. .--|-..++.|+..|++||-+-... +... .....+ .+=..+.+|+.+++.
T Consensus 22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~--~~~~-------------~~~~~l-~~v~~~~~Dl~d~~~ 85 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRP--DVAR-------------EALAGI-DGVEVVMLDLADLES 85 (315)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHH-------------HHHHHh-hhCeEEEccCCCHHH
Confidence 3567766665544 2236677889999999999875321 1000 001111 123567899999988
Q ss_pred HHHHHHHH----hhCCeEEEcCC
Q psy16437 294 QQIIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 294 ~~~~~~Li----~~ADVvi~n~~ 312 (501)
.+.+.+-+ ...|+||+|--
T Consensus 86 v~~~~~~~~~~~~~iD~li~nAg 108 (315)
T PRK06196 86 VRAFAERFLDSGRRIDILINNAG 108 (315)
T ss_pred HHHHHHHHHhcCCCCCEEEECCC
Confidence 75544433 35799999874
No 202
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.90 E-value=2.7e+02 Score=26.81 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=51.0
Q ss_pred CCCCcEEEEeCCc---cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcc--hhhhhhcCCceEEEEeCCC
Q psy16437 216 PLSNVRILDLTRI---IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELS--TYFTCVNRNKKSVCVDFKT 290 (501)
Q Consensus 216 pL~GlrVldl~~~---~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~--~~f~~~nrgKrsv~lDl~~ 290 (501)
.|+|-+||=.+.. -=|-..++.|++.|++||-+..-.. +.....+.. .. .... .-+...+..-..+.+|+++
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~-~~~~~~~~~-~~-~~~~~~~~~~~~g~~~~~~~~D~~~ 79 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAY-DKEMPWGVD-QD-EQIQLQEELLKNGVKVSSMELDLTQ 79 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccc-ccccccccc-HH-HHHHHHHHHHhcCCeEEEEEcCCCC
Confidence 5888888887763 2367788889999999998632100 000000000 00 0000 0011112222356789999
Q ss_pred hhhHHHHHHHHh----hCCeEEEcCC
Q psy16437 291 PEGQQIIKDLAK----QCDVLVENFV 312 (501)
Q Consensus 291 ~~g~~~~~~Li~----~ADVvi~n~~ 312 (501)
++..+.+.+-+. .-|+||.|..
T Consensus 80 ~~~i~~~~~~~~~~~g~id~li~~ag 105 (256)
T PRK12859 80 NDAPKELLNKVTEQLGYPHILVNNAA 105 (256)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEECCC
Confidence 988755544433 2699998863
No 203
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.89 E-value=3e+02 Score=26.33 Aligned_cols=94 Identities=15% Similarity=0.089 Sum_probs=49.7
Q ss_pred CCCCcEEEEeCCc---cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcc--hhhhhhcCCceEEEEeCCC
Q psy16437 216 PLSNVRILDLTRI---IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELS--TYFTCVNRNKKSVCVDFKT 290 (501)
Q Consensus 216 pL~GlrVldl~~~---~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~--~~f~~~nrgKrsv~lDl~~ 290 (501)
+|.|-.||=.+.. --|-..++.|++.|++||-+-... .+..+.++.... .... .........-..+.+|+.+
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~ 78 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSP-YDKTMPWGMHDK--EPVLLKEEIESYGVRCEHMEIDLSQ 78 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCc-cccccccccchh--hHHHHHHHHHhcCCeEEEEECCCCC
Confidence 3566555555542 246778999999999999885321 111111100000 0000 0011111223567899999
Q ss_pred hhhHHHHHHHH----hhCCeEEEcCC
Q psy16437 291 PEGQQIIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 291 ~~g~~~~~~Li----~~ADVvi~n~~ 312 (501)
++..+.+.+-+ ..-|+||+|.-
T Consensus 79 ~~~~~~~~~~~~~~~g~id~vi~~ag 104 (256)
T PRK12748 79 PYAPNRVFYAVSERLGDPSILINNAA 104 (256)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 88865444433 24699998863
No 204
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=26.81 E-value=1.2e+02 Score=34.46 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=32.9
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecC
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQP 251 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p 251 (501)
+-.|-+|+=++...||=.|+..|+.+|.+|+-+|..
T Consensus 324 ~~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~ 359 (654)
T PRK12769 324 TKSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRH 359 (654)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 347899999999999999999999999999999963
No 205
>PHA00451 protein kinase
Probab=26.76 E-value=2.8e+02 Score=28.10 Aligned_cols=44 Identities=9% Similarity=0.300 Sum_probs=25.4
Q ss_pred ceeEecccccccCCCCCCCCCCCCCCCChHHHHHhhcCCChHHHHHHhhhchhhhh
Q psy16437 87 DIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLKDLLNYDETTIAKLKEKKILGLI 142 (501)
Q Consensus 87 ~~~~~~~p~~fs~~~~~~~~~aP~lGeht~eVL~ellG~s~~ei~~L~~~Gvv~~~ 142 (501)
.+....-|+.||.....- |-.--+.++++.| ++++..+..|...
T Consensus 206 g~p~ITDPVSFS~dr~re----~GF~ldPd~LiaE--------vEaia~~~~IeRc 249 (362)
T PHA00451 206 GVPYITDPVSFSHDRERE----PGFPLDPDELIAE--------VEAIANQRMIERC 249 (362)
T ss_pred CCeEecCCccccCccccC----CCCCCCHHHHHHH--------HHHHHHHHHHHHH
Confidence 345667788998653321 1122355777765 5666666666554
No 206
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=26.68 E-value=1.3e+02 Score=28.73 Aligned_cols=69 Identities=20% Similarity=0.280 Sum_probs=43.5
Q ss_pred hhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHH-HHHHhh----CC
Q psy16437 231 GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQII-KDLAKQ----CD 305 (501)
Q Consensus 231 gp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~-~~Li~~----AD 305 (501)
|-..++.|+..||.||-+.... ..... ....... ..+.+-+.+|+.+++..+.+ .+..+. -|
T Consensus 9 G~aia~~l~~~Ga~V~~~~~~~--~~~~~---------~~~~l~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD 75 (241)
T PF13561_consen 9 GRAIARALAEEGANVILTDRNE--EKLAD---------ALEELAK--EYGAEVIQCDLSDEESVEALFDEAVERFGGRID 75 (241)
T ss_dssp HHHHHHHHHHTTEEEEEEESSH--HHHHH---------HHHHHHH--HTTSEEEESCTTSHHHHHHHHHHHHHHHCSSES
T ss_pred HHHHHHHHHHCCCEEEEEeCCh--HHHHH---------HHHHHHH--HcCCceEeecCcchHHHHHHHHHHHhhcCCCeE
Confidence 6678999999999999997643 10000 0011111 23344699999999887655 444444 49
Q ss_pred eEEEcCC
Q psy16437 306 VLVENFV 312 (501)
Q Consensus 306 Vvi~n~~ 312 (501)
+||.|.-
T Consensus 76 ~lV~~a~ 82 (241)
T PF13561_consen 76 ILVNNAG 82 (241)
T ss_dssp EEEEEEE
T ss_pred EEEeccc
Confidence 9998754
No 207
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=26.52 E-value=71 Score=34.85 Aligned_cols=31 Identities=29% Similarity=0.242 Sum_probs=29.3
Q ss_pred cEEEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 220 lrVldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
.||+=++..|||=.|++.|||.|-||+-.|.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea 31 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEA 31 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEec
Confidence 3899999999999999999999999999996
No 208
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=26.43 E-value=2.5e+02 Score=26.62 Aligned_cols=84 Identities=18% Similarity=0.126 Sum_probs=48.8
Q ss_pred CCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 217 LSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 217 L~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
|+|-+||=.+. .--|-..++.|+..|++|+-+.... +..... .......+.+-..+.+|+.+++..+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~--~~~~~~----------~~~~~~~~~~~~~~~~d~~~~~~~~ 68 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNR--EAAEKV----------AADIRAKGGNAQAFACDITDRDSVD 68 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH--HHHHHH----------HHHHHhcCCcEEEEEcCCCCHHHHH
Confidence 34555555542 2336677888889999998875432 111000 0011122334566889999888765
Q ss_pred HHHHHHh----hCCeEEEcCC
Q psy16437 296 IIKDLAK----QCDVLVENFV 312 (501)
Q Consensus 296 ~~~~Li~----~ADVvi~n~~ 312 (501)
.+.+-+. ..|+||+|.-
T Consensus 69 ~~~~~~~~~~~~~d~vi~~ag 89 (250)
T TIGR03206 69 TAVAAAEQALGPVDVLVNNAG 89 (250)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 5443332 4799998874
No 209
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=26.42 E-value=2.7e+02 Score=28.41 Aligned_cols=38 Identities=18% Similarity=-0.002 Sum_probs=28.1
Q ss_pred CCCCCcEEEEeCCccc-hhHHHHHHHHcCCcEEEEecCC
Q psy16437 215 LPLSNVRILDLTRIIA-GPFCTMLLADLGAEVIKVEQPV 252 (501)
Q Consensus 215 ~pL~GlrVldl~~~~a-gp~a~~~LAdlGA~VIKVE~p~ 252 (501)
+.|+|++|.=++..-- .-....+|+-+|++|.-+-|+.
T Consensus 143 g~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~ 181 (302)
T PRK14805 143 GDVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPG 181 (302)
T ss_pred CCcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCch
Confidence 4699999987766321 2345778999999999888764
No 210
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=26.42 E-value=3.1e+02 Score=25.80 Aligned_cols=81 Identities=22% Similarity=0.121 Sum_probs=47.5
Q ss_pred CCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhh-hcCC--ceEEEEeCCChh
Q psy16437 217 LSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTC-VNRN--KKSVCVDFKTPE 292 (501)
Q Consensus 217 L~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~-~nrg--Krsv~lDl~~~~ 292 (501)
+.+-+||=.+. ..-|-...+.|++.|++||-+-... +.. ...... .+.+ -.-+.+|+.+++
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~--~~~-------------~~~~~~l~~~~~~~~~~~~Dl~~~~ 68 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICG--DDA-------------AATAELVEAAGGKARARQVDVRDRA 68 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH--HHH-------------HHHHHHHHhcCCeEEEEECCCCCHH
Confidence 45556665542 3336667788889999998875431 100 011111 1222 345678999888
Q ss_pred hHHHHHHHHh----hCCeEEEcCC
Q psy16437 293 GQQIIKDLAK----QCDVLVENFV 312 (501)
Q Consensus 293 g~~~~~~Li~----~ADVvi~n~~ 312 (501)
..+.+.+-+. ..|+||+|.-
T Consensus 69 ~~~~~~~~~~~~~~~~d~vi~~ag 92 (251)
T PRK12826 69 ALKAAVAAGVEDFGRLDILVANAG 92 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCC
Confidence 7655544332 6899998863
No 211
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=26.40 E-value=1.3e+02 Score=31.29 Aligned_cols=31 Identities=23% Similarity=0.199 Sum_probs=28.7
Q ss_pred cEEEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 220 lrVldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
..|+=.+..++|-+++..|+..|-+|.-||.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~ 33 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLER 33 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEcc
Confidence 3588889999999999999999999999997
No 212
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=26.16 E-value=2.6e+02 Score=28.55 Aligned_cols=78 Identities=12% Similarity=0.086 Sum_probs=48.3
Q ss_pred CCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCc--eEEEEeCCChhhH
Q psy16437 218 SNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNK--KSVCVDFKTPEGQ 294 (501)
Q Consensus 218 ~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgK--rsv~lDl~~~~g~ 294 (501)
++.|||=.+. ..-|-...+.|...|.+|+-+-... ... ...+..++.+. +-+..|+.+++.
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~--~~~-------------~~~~~~~~~~~~~~~~~~Dl~~~~~- 72 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDP--AKS-------------LHLLSKWKEGDRLRLFRADLQEEGS- 72 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh--HHH-------------HHHHHhhccCCeEEEEECCCCCHHH-
Confidence 4557777764 4456777788888999998764311 100 01122222222 356679987654
Q ss_pred HHHHHHHhhCCeEEEcCCh
Q psy16437 295 QIIKDLAKQCDVLVENFVP 313 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~p 313 (501)
+.+++...|+||++-..
T Consensus 73 --~~~~~~~~d~Vih~A~~ 89 (353)
T PLN02896 73 --FDEAVKGCDGVFHVAAS 89 (353)
T ss_pred --HHHHHcCCCEEEECCcc
Confidence 77788899999988753
No 213
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.94 E-value=3.6e+02 Score=27.01 Aligned_cols=84 Identities=18% Similarity=0.098 Sum_probs=49.8
Q ss_pred CCCCCCcEEEEeCC--ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCc--eEEEEeCC
Q psy16437 214 SLPLSNVRILDLTR--IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNK--KSVCVDFK 289 (501)
Q Consensus 214 ~~pL~GlrVldl~~--~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgK--rsv~lDl~ 289 (501)
...|+|-+||=.+. .| |-..++.|+..||.||-+.... .+..+. ..-.....|. ..+.+|+.
T Consensus 7 ~~~l~~k~~lVTGas~gI-G~~ia~~L~~~Ga~Vv~~~~~~-~~~~~~------------~~~~i~~~g~~~~~~~~Dv~ 72 (306)
T PRK07792 7 TTDLSGKVAVVTGAAAGL-GRAEALGLARLGATVVVNDVAS-ALDASD------------VLDEIRAAGAKAVAVAGDIS 72 (306)
T ss_pred CcCCCCCEEEEECCCChH-HHHHHHHHHHCCCEEEEecCCc-hhHHHH------------HHHHHHhcCCeEEEEeCCCC
Confidence 35688888775543 34 5666788999999999875321 000000 0001111232 34678999
Q ss_pred ChhhHHHHHHHH---hhCCeEEEcC
Q psy16437 290 TPEGQQIIKDLA---KQCDVLVENF 311 (501)
Q Consensus 290 ~~~g~~~~~~Li---~~ADVvi~n~ 311 (501)
+++..+.+.+-+ ...|+||+|-
T Consensus 73 d~~~~~~~~~~~~~~g~iD~li~nA 97 (306)
T PRK07792 73 QRATADELVATAVGLGGLDIVVNNA 97 (306)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECC
Confidence 988766554443 3589999985
No 214
>PRK08589 short chain dehydrogenase; Validated
Probab=25.89 E-value=1.2e+02 Score=29.77 Aligned_cols=82 Identities=22% Similarity=0.175 Sum_probs=47.5
Q ss_pred CCCcEEEEeC--CccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 217 LSNVRILDLT--RIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 217 L~GlrVldl~--~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
|+|-+||=.+ ..| |-..++.|++.|++||-+... +..... -.-....+.+-..+.+|+.+++..
T Consensus 4 l~~k~vlItGas~gI-G~aia~~l~~~G~~vi~~~r~---~~~~~~----------~~~~~~~~~~~~~~~~Dl~~~~~~ 69 (272)
T PRK08589 4 LENKVAVITGASTGI-GQASAIALAQEGAYVLAVDIA---EAVSET----------VDKIKSNGGKAKAYHVDISDEQQV 69 (272)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCc---HHHHHH----------HHHHHhcCCeEEEEEeecCCHHHH
Confidence 4554555443 234 567788889999999988542 111000 000111122345788999999886
Q ss_pred HHHHHHHh----hCCeEEEcCC
Q psy16437 295 QIIKDLAK----QCDVLVENFV 312 (501)
Q Consensus 295 ~~~~~Li~----~ADVvi~n~~ 312 (501)
+.+.+-+. .-|+||+|--
T Consensus 70 ~~~~~~~~~~~g~id~li~~Ag 91 (272)
T PRK08589 70 KDFASEIKEQFGRVDVLFNNAG 91 (272)
T ss_pred HHHHHHHHHHcCCcCEEEECCC
Confidence 54444332 4699999863
No 215
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=25.78 E-value=2.5e+02 Score=24.45 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=43.4
Q ss_pred chhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHHHHHhhCCeEEE
Q psy16437 230 AGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIKDLAKQCDVLVE 309 (501)
Q Consensus 230 agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~~Li~~ADVvi~ 309 (501)
.+|+...+|.++|++|+...-.. |. ..+=++.++++++.+|+||+
T Consensus 19 ~~~~l~~~l~~~G~~~~~~~~v~--Dd---------------------------------~~~I~~~l~~~~~~~dliit 63 (135)
T smart00852 19 NGPALAELLTELGIEVTRYVIVP--DD---------------------------------KEAIKEALREALERADLVIT 63 (135)
T ss_pred cHHHHHHHHHHCCCeEEEEEEeC--CC---------------------------------HHHHHHHHHHHHhCCCEEEE
Confidence 47899999999999988776421 11 02234667788889999998
Q ss_pred cCChhhhhhcCCCHHHHhhh
Q psy16437 310 NFVPGKLDRLNLGYKHLSEI 329 (501)
Q Consensus 310 n~~pg~l~~lGl~~~~L~~~ 329 (501)
+---+ .....+.++.+++.
T Consensus 64 tGG~g-~g~~D~t~~~l~~~ 82 (135)
T smart00852 64 TGGTG-PGPDDVTPEAVAEA 82 (135)
T ss_pred cCCCC-CCCCcCcHHHHHHH
Confidence 75433 34445667777665
No 216
>PRK05884 short chain dehydrogenase; Provisional
Probab=25.66 E-value=2e+02 Score=27.18 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=40.8
Q ss_pred hhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHHHHH-hhCCeEEE
Q psy16437 231 GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIKDLA-KQCDVLVE 309 (501)
Q Consensus 231 gp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~~Li-~~ADVvi~ 309 (501)
|-..++.|++.|++|+-+... .+... ..-... +-+.+.+|+.+++..+.+.+-+ ...|+||.
T Consensus 13 G~~ia~~l~~~g~~v~~~~r~--~~~~~-------------~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~ 75 (223)
T PRK05884 13 GRTIAEGFRNDGHKVTLVGAR--RDDLE-------------VAAKEL--DVDAIVCDNTDPASLEEARGLFPHHLDTIVN 75 (223)
T ss_pred HHHHHHHHHHCCCEEEEEeCC--HHHHH-------------HHHHhc--cCcEEecCCCCHHHHHHHHHHHhhcCcEEEE
Confidence 567788889999999988532 11100 000111 3457889999998765544433 35799998
Q ss_pred cCC
Q psy16437 310 NFV 312 (501)
Q Consensus 310 n~~ 312 (501)
|.-
T Consensus 76 ~ag 78 (223)
T PRK05884 76 VPA 78 (223)
T ss_pred CCC
Confidence 853
No 217
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=25.63 E-value=6.9e+02 Score=26.43 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=27.9
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCC
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPV 252 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~ 252 (501)
.|.|.||+=++.-.-.-..+++|.++|++|+.+-.+.
T Consensus 271 ~l~Gkrv~i~gd~~~~~~l~~~L~elGm~~v~~~t~~ 307 (407)
T TIGR01279 271 LLRGKKIFFFGDNLLELPLARFLKRCGMEVVECGTPY 307 (407)
T ss_pred hcCCCEEEEECCchHHHHHHHHHHHCCCEEEEecCCC
Confidence 5899998866654333355899999999999887543
No 218
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=25.54 E-value=77 Score=34.06 Aligned_cols=37 Identities=27% Similarity=0.237 Sum_probs=30.9
Q ss_pred CCCCCCcEEEEeCCccch-hHHHHHHHHcCCcEEEEec
Q psy16437 214 SLPLSNVRILDLTRIIAG-PFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 214 ~~pL~GlrVldl~~~~ag-p~a~~~LAdlGA~VIKVE~ 250 (501)
.+||+|+||.-..++.+- ..-.+.|.+.||+|.-.-+
T Consensus 43 ~~pl~G~~i~~~~Hl~~~Ta~l~~~L~~~GA~v~~~~~ 80 (425)
T PRK05476 43 EKPLKGARIAGCLHMTIQTAVLIETLKALGAEVRWASC 80 (425)
T ss_pred cCCCCCCEEEEEEeccccHHHHHHHHHHcCCEEEEEeC
Confidence 479999999999998764 5668899999999987653
No 219
>PRK06182 short chain dehydrogenase; Validated
Probab=25.48 E-value=2.5e+02 Score=27.26 Aligned_cols=65 Identities=20% Similarity=0.171 Sum_probs=41.5
Q ss_pred hhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHHH-HH---hhCCe
Q psy16437 231 GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIKD-LA---KQCDV 306 (501)
Q Consensus 231 gp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~~-Li---~~ADV 306 (501)
|-..++.|+..|++|+-+... .+..+. ....+-.-+.+|+.+++..+.+.+ +. ...|+
T Consensus 16 G~~la~~l~~~G~~V~~~~r~--~~~l~~----------------~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~ 77 (273)
T PRK06182 16 GKATARRLAAQGYTVYGAARR--VDKMED----------------LASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDV 77 (273)
T ss_pred HHHHHHHHHHCCCEEEEEeCC--HHHHHH----------------HHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 666778888999999977532 111110 011245678899999888644433 22 25799
Q ss_pred EEEcCCh
Q psy16437 307 LVENFVP 313 (501)
Q Consensus 307 vi~n~~p 313 (501)
||+|.-.
T Consensus 78 li~~ag~ 84 (273)
T PRK06182 78 LVNNAGY 84 (273)
T ss_pred EEECCCc
Confidence 9998754
No 220
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=25.34 E-value=3.7e+02 Score=25.44 Aligned_cols=81 Identities=22% Similarity=0.208 Sum_probs=48.2
Q ss_pred CCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 217 LSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 217 L~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
|+|-+||=.+. .--|-..++.|++.|++||-+.... .+.. .......+..=..+.+|+.+++..+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~~~~-------------~~~~~~~~~~~~~~~~D~~~~~~~~ 68 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-PSET-------------QQQVEALGRRFLSLTADLSDIEAIK 68 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-HHHH-------------HHHHHhcCCceEEEECCCCCHHHHH
Confidence 56666665554 2236677889999999999886421 0000 0001111111146789999998876
Q ss_pred HHHHHH----hhCCeEEEcC
Q psy16437 296 IIKDLA----KQCDVLVENF 311 (501)
Q Consensus 296 ~~~~Li----~~ADVvi~n~ 311 (501)
.+.+-+ ...|+||+|.
T Consensus 69 ~~~~~~~~~~~~~d~li~~a 88 (248)
T TIGR01832 69 ALVDSAVEEFGHIDILVNNA 88 (248)
T ss_pred HHHHHHHHHcCCCCEEEECC
Confidence 444433 3589999885
No 221
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=25.30 E-value=1.8e+02 Score=28.02 Aligned_cols=80 Identities=18% Similarity=0.075 Sum_probs=47.5
Q ss_pred CCCcEEEEeC--CccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 217 LSNVRILDLT--RIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 217 L~GlrVldl~--~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
|+|-+||=.+ ..| |-..++.|++.|++|+-+.... +... .........-..+.+|+.+++..
T Consensus 4 ~~~k~vlVtGas~gI-G~~ia~~l~~~G~~V~~~~r~~--~~~~-------------~~~~~~~~~~~~~~~D~~~~~~~ 67 (263)
T PRK06200 4 LHGQVALITGGGSGI-GRALVERFLAEGARVAVLERSA--EKLA-------------SLRQRFGDHVLVVEGDVTSYADN 67 (263)
T ss_pred CCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEeCCH--HHHH-------------HHHHHhCCcceEEEccCCCHHHH
Confidence 4455555443 334 6677888999999998875421 1110 11111222335678899998876
Q ss_pred HH-HHHHHh---hCCeEEEcCC
Q psy16437 295 QI-IKDLAK---QCDVLVENFV 312 (501)
Q Consensus 295 ~~-~~~Li~---~ADVvi~n~~ 312 (501)
+. +.++.+ ..|+||+|--
T Consensus 68 ~~~~~~~~~~~g~id~li~~ag 89 (263)
T PRK06200 68 QRAVDQTVDAFGKLDCFVGNAG 89 (263)
T ss_pred HHHHHHHHHhcCCCCEEEECCC
Confidence 44 333333 4799999865
No 222
>PRK06701 short chain dehydrogenase; Provisional
Probab=25.27 E-value=3e+02 Score=27.32 Aligned_cols=84 Identities=18% Similarity=0.078 Sum_probs=49.1
Q ss_pred CCCCCcEEEEeCC--ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCce--EEEEeCCC
Q psy16437 215 LPLSNVRILDLTR--IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKK--SVCVDFKT 290 (501)
Q Consensus 215 ~pL~GlrVldl~~--~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKr--sv~lDl~~ 290 (501)
..|+|-+||=.+. .| |-..++.|+..|++|+-+-... .+..+.. ..... ..+++ .+.+|+.+
T Consensus 42 ~~~~~k~iLItGasggI-G~~la~~l~~~G~~V~l~~r~~-~~~~~~~----------~~~~~--~~~~~~~~~~~Dl~~ 107 (290)
T PRK06701 42 GKLKGKVALITGGDSGI-GRAVAVLFAKEGADIAIVYLDE-HEDANET----------KQRVE--KEGVKCLLIPGDVSD 107 (290)
T ss_pred cCCCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEeCCc-chHHHHH----------HHHHH--hcCCeEEEEEccCCC
Confidence 4678888877753 34 6677788888999999774321 0111000 00111 12332 56789999
Q ss_pred hhhHHHHHHHH----hhCCeEEEcCC
Q psy16437 291 PEGQQIIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 291 ~~g~~~~~~Li----~~ADVvi~n~~ 312 (501)
++..+.+.+-+ ...|+||+|--
T Consensus 108 ~~~~~~~~~~i~~~~~~iD~lI~~Ag 133 (290)
T PRK06701 108 EAFCKDAVEETVRELGRLDILVNNAA 133 (290)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 88764433322 24699998864
No 223
>PRK06500 short chain dehydrogenase; Provisional
Probab=25.16 E-value=1.9e+02 Score=27.44 Aligned_cols=81 Identities=12% Similarity=-0.025 Sum_probs=47.5
Q ss_pred CCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 217 LSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 217 L~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
|.|-+||=.+. ..-|-..++.|++.|++||-+.... +... ..-..++..-.-+.+|+.+++...
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~--~~~~-------------~~~~~~~~~~~~~~~D~~~~~~~~ 68 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDP--ASLE-------------AARAELGESALVIRADAGDVAAQK 68 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH--HHHH-------------HHHHHhCCceEEEEecCCCHHHHH
Confidence 34445554443 2336677888999999999875421 1000 001112222345778999988876
Q ss_pred HHHHHHh----hCCeEEEcCC
Q psy16437 296 IIKDLAK----QCDVLVENFV 312 (501)
Q Consensus 296 ~~~~Li~----~ADVvi~n~~ 312 (501)
.+.+.+. ..|+||+|--
T Consensus 69 ~~~~~~~~~~~~id~vi~~ag 89 (249)
T PRK06500 69 ALAQALAEAFGRLDAVFINAG 89 (249)
T ss_pred HHHHHHHHHhCCCCEEEECCC
Confidence 5555443 4699998864
No 224
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.03 E-value=2.7e+02 Score=27.03 Aligned_cols=82 Identities=16% Similarity=-0.003 Sum_probs=47.8
Q ss_pred CCCcEEEEeCC----ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChh
Q psy16437 217 LSNVRILDLTR----IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPE 292 (501)
Q Consensus 217 L~GlrVldl~~----~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~ 292 (501)
|+|-.||=.+. .| |-..++.|+..|+.||-+-.. + |.. .. .... .........+.+|+.+++
T Consensus 4 ~~~k~~lITGa~~~~GI-G~a~a~~l~~~G~~v~~~~~~---~--~~~--~~-----~~~~-~~~~~~~~~~~~Dv~~~~ 69 (261)
T PRK08690 4 LQGKKILITGMISERSI-AYGIAKACREQGAELAFTYVV---D--KLE--ER-----VRKM-AAELDSELVFRCDVASDD 69 (261)
T ss_pred cCCcEEEEECCCCCCcH-HHHHHHHHHHCCCEEEEEcCc---H--HHH--HH-----HHHH-HhccCCceEEECCCCCHH
Confidence 56666665551 33 567788899999999875321 1 100 00 0000 001112356789999999
Q ss_pred hHHHHHHHH-h---hCCeEEEcCC
Q psy16437 293 GQQIIKDLA-K---QCDVLVENFV 312 (501)
Q Consensus 293 g~~~~~~Li-~---~ADVvi~n~~ 312 (501)
..+.+.+-+ + .-|+||.|--
T Consensus 70 ~v~~~~~~~~~~~g~iD~lVnnAG 93 (261)
T PRK08690 70 EINQVFADLGKHWDGLDGLVHSIG 93 (261)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCc
Confidence 986554333 2 4899999963
No 225
>PRK06139 short chain dehydrogenase; Provisional
Probab=24.96 E-value=2.9e+02 Score=28.24 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=49.3
Q ss_pred CCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCc--eEEEEeCCChh
Q psy16437 216 PLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNK--KSVCVDFKTPE 292 (501)
Q Consensus 216 pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgK--rsv~lDl~~~~ 292 (501)
.|.+-+||=.+. .--|-..++.|+..|++||-+... .+..... .-.....|. ..+.+|+.+++
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~--~~~l~~~------------~~~~~~~g~~~~~~~~Dv~d~~ 69 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARD--EEALQAV------------AEECRALGAEVLVVPTDVTDAD 69 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECC--HHHHHHH------------HHHHHhcCCcEEEEEeeCCCHH
Confidence 456656665443 233667788899999999977531 1111100 001111232 35678999998
Q ss_pred hHHHHHHHH----hhCCeEEEcCC
Q psy16437 293 GQQIIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 293 g~~~~~~Li----~~ADVvi~n~~ 312 (501)
..+.+.+-+ ...|++|+|--
T Consensus 70 ~v~~~~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 70 QVKALATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC
Confidence 876655544 34699999864
No 226
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=24.93 E-value=46 Score=32.31 Aligned_cols=8 Identities=38% Similarity=0.480 Sum_probs=4.0
Q ss_pred HHHhhhCC
Q psy16437 324 KHLSEINS 331 (501)
Q Consensus 324 ~~L~~~nP 331 (501)
|.=++||.
T Consensus 200 ERHkeINk 207 (225)
T PF10500_consen 200 ERHKEINK 207 (225)
T ss_pred HHHHHHHH
Confidence 44445555
No 227
>PRK08303 short chain dehydrogenase; Provisional
Probab=24.90 E-value=2.7e+02 Score=28.09 Aligned_cols=92 Identities=20% Similarity=0.183 Sum_probs=51.6
Q ss_pred CCCCCcEEEEeCCc-cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhh---hhhcCCceEEEEeCCC
Q psy16437 215 LPLSNVRILDLTRI-IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYF---TCVNRNKKSVCVDFKT 290 (501)
Q Consensus 215 ~pL~GlrVldl~~~-~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f---~~~nrgKrsv~lDl~~ 290 (501)
..|+|-+||-.+.. --|-.+++.|+..|+.||-+..-..+... ...........- ...+.....+.+|+.+
T Consensus 4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~ 78 (305)
T PRK08303 4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRS-----EYDRPETIEETAELVTAAGGRGIAVQVDHLV 78 (305)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccc-----cccccchHHHHHHHHHhcCCceEEEEcCCCC
Confidence 45778777766652 23677889999999999987532100000 000000000001 1111123457899999
Q ss_pred hhhHHHHHHHHh----hCCeEEEcC
Q psy16437 291 PEGQQIIKDLAK----QCDVLVENF 311 (501)
Q Consensus 291 ~~g~~~~~~Li~----~ADVvi~n~ 311 (501)
++..+.+.+-+. .-|+||.|-
T Consensus 79 ~~~v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 79 PEQVRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHHHHHHcCCccEEEECC
Confidence 998766655442 479999996
No 228
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=24.80 E-value=7.5e+02 Score=26.34 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=25.1
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHH-cCCcEEEEecC
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLAD-LGAEVIKVEQP 251 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAd-lGA~VIKVE~p 251 (501)
..|.|.||+=.+...-.=..+++|.+ +|.+|+.+-.+
T Consensus 286 ~~l~Gkrvai~g~~~~~~~la~~L~eelGm~~v~v~t~ 323 (427)
T PRK02842 286 ELLRGKRVFFLPDSQLEIPLARFLSRECGMELVEVGTP 323 (427)
T ss_pred hhcCCcEEEEECCchhHHHHHHHHHHhCCCEEEEeCCC
Confidence 35899999755542211225677777 99999998754
No 229
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=24.80 E-value=3.8e+02 Score=28.48 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=22.7
Q ss_pred CCCCcEEEEeCC-ccchhHHHHHHH-HcCCcEEEEec
Q psy16437 216 PLSNVRILDLTR-IIAGPFCTMLLA-DLGAEVIKVEQ 250 (501)
Q Consensus 216 pL~GlrVldl~~-~~agp~a~~~LA-dlGA~VIKVE~ 250 (501)
-|.|.||.=.+. ..+- ..+++|. ++|.+|+.|-.
T Consensus 285 ~l~Gk~vai~~~~~~~~-~la~~l~~elG~~v~~i~~ 320 (415)
T cd01977 285 RLKGKKVCIWTGGPKLW-HWTKVIEDELGMQVVAMSS 320 (415)
T ss_pred HcCCCEEEEECCCchHH-HHHHHHHHhcCCEEEEEEE
Confidence 488999864432 2333 3455665 99999999864
No 230
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=24.76 E-value=75 Score=29.36 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=24.1
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHc--CCcEEEEe
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADL--GAEVIKVE 249 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdl--GA~VIKVE 249 (501)
..+.|.+||||+... | .+|..+|.+ +++|+-=+
T Consensus 42 ~~~~~~~VLELGaG~-G-l~gi~~a~~~~~~~Vv~TD 76 (173)
T PF10294_consen 42 ELFRGKRVLELGAGT-G-LPGIAAAKLFGAARVVLTD 76 (173)
T ss_dssp GGTTTSEEEETT-TT-S-HHHHHHHHT-T-SEEEEEE
T ss_pred hhcCCceEEEECCcc-c-hhHHHHHhccCCceEEEec
Confidence 468999999999974 3 788888888 66666554
No 231
>PRK12743 oxidoreductase; Provisional
Probab=24.57 E-value=1.9e+02 Score=27.85 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=41.2
Q ss_pred hhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHH-HHHh---hCCe
Q psy16437 231 GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIK-DLAK---QCDV 306 (501)
Q Consensus 231 gp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~-~Li~---~ADV 306 (501)
|-.+++.|++.|++|+-+-... .+..... .......+.+-..+.+|+.+++..+.+. ++.+ ..|+
T Consensus 15 G~~~a~~l~~~G~~V~~~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 83 (256)
T PRK12743 15 GKACALLLAQQGFDIGITWHSD-EEGAKET----------AEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRIDV 83 (256)
T ss_pred HHHHHHHHHHCCCEEEEEeCCC-hHHHHHH----------HHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 5677888899999998775322 1100000 0000111223456789999998864433 3333 4799
Q ss_pred EEEcCC
Q psy16437 307 LVENFV 312 (501)
Q Consensus 307 vi~n~~ 312 (501)
||+|--
T Consensus 84 li~~ag 89 (256)
T PRK12743 84 LVNNAG 89 (256)
T ss_pred EEECCC
Confidence 998864
No 232
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=24.57 E-value=3.1e+02 Score=29.57 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=27.3
Q ss_pred CCCCcE-EEEeCCccchhHHHHH---HHHcCCcEEEEe
Q psy16437 216 PLSNVR-ILDLTRIIAGPFCTML---LADLGAEVIKVE 249 (501)
Q Consensus 216 pL~Glr-Vldl~~~~agp~a~~~---LAdlGA~VIKVE 249 (501)
.+.++| |+|..+..+++++..+ |-.+|++|.-++
T Consensus 167 ~~~~lkVvvD~~~G~~~~~~~~l~~~l~~lG~~v~v~~ 204 (456)
T PRK15414 167 NLTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIK 204 (456)
T ss_pred cCCCCEEEEECCCCcchhhHHHHHHHHHhcCCCeEEEE
Confidence 357888 7799999999999988 999999555443
No 233
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=24.57 E-value=1.9e+02 Score=25.37 Aligned_cols=64 Identities=25% Similarity=0.385 Sum_probs=40.1
Q ss_pred hhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHHHHHhhCCeEEEc
Q psy16437 231 GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIKDLAKQCDVLVEN 310 (501)
Q Consensus 231 gp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~~Li~~ADVvi~n 310 (501)
+|+...+|.++|.+|+.+... +|. ..+=++.+.++++.+|+||++
T Consensus 21 ~~~l~~~l~~~G~~v~~~~~v--~Dd---------------------------------~~~i~~~i~~~~~~~Dlvitt 65 (133)
T cd00758 21 GPALEALLEDLGCEVIYAGVV--PDD---------------------------------ADSIRAALIEASREADLVLTT 65 (133)
T ss_pred HHHHHHHHHHCCCEEEEeeec--CCC---------------------------------HHHHHHHHHHHHhcCCEEEEC
Confidence 789999999999999876532 221 012245677788889999977
Q ss_pred CChhhhhhcCCCHHHHhhhC
Q psy16437 311 FVPGKLDRLNLGYKHLSEIN 330 (501)
Q Consensus 311 ~~pg~l~~lGl~~~~L~~~n 330 (501)
---+ ....-+.++.+.+.-
T Consensus 66 GG~g-~g~~D~t~~ai~~~g 84 (133)
T cd00758 66 GGTG-VGRRDVTPEALAELG 84 (133)
T ss_pred CCCC-CCCCcchHHHHHHhc
Confidence 4322 122334455555544
No 234
>PRK07856 short chain dehydrogenase; Provisional
Probab=24.37 E-value=2.3e+02 Score=27.05 Aligned_cols=76 Identities=22% Similarity=0.182 Sum_probs=45.7
Q ss_pred CCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 217 LSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 217 L~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
|+|-+||=.+. .--|-..++.|+..|++||-+.... +. ...+.+-..+.+|+.+++..+
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~--~~------------------~~~~~~~~~~~~D~~~~~~~~ 63 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA--PE------------------TVDGRPAEFHAADVRDPDQVA 63 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh--hh------------------hhcCCceEEEEccCCCHHHHH
Confidence 55656554442 2226677888899999999886421 11 001122345789999987754
Q ss_pred HHHHHH----hhCCeEEEcCC
Q psy16437 296 IIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 296 ~~~~Li----~~ADVvi~n~~ 312 (501)
.+.+-+ ...|+||+|.-
T Consensus 64 ~~~~~~~~~~~~id~vi~~ag 84 (252)
T PRK07856 64 ALVDAIVERHGRLDVLVNNAG 84 (252)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 433322 23599999864
No 235
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=24.34 E-value=88 Score=31.39 Aligned_cols=37 Identities=30% Similarity=0.273 Sum_probs=27.4
Q ss_pred CCCCCCcEEEEeCCccc-hhHHHHHHHHcCCcEEEEec
Q psy16437 214 SLPLSNVRILDLTRIIA-GPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 214 ~~pL~GlrVldl~~~~a-gp~a~~~LAdlGA~VIKVE~ 250 (501)
..||+|+||--.-++-+ -.+-...|.++||+|.-.-+
T Consensus 38 ~kPl~G~rIa~cLHle~kTA~L~~tL~a~GAeV~~~~s 75 (268)
T PF05221_consen 38 EKPLKGARIAGCLHLEAKTAVLAETLKALGAEVRWTGS 75 (268)
T ss_dssp T-TTTTEEEEEES--SHHHHHHHHHHHHTTEEEEEEES
T ss_pred cCCCCCCEEEEEEechHHHHHHHHHHHHcCCeEEEecC
Confidence 47999999987655433 36778999999999987753
No 236
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=24.31 E-value=1.9e+02 Score=25.76 Aligned_cols=82 Identities=21% Similarity=0.265 Sum_probs=50.7
Q ss_pred CCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHH
Q psy16437 217 LSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQI 296 (501)
Q Consensus 217 L~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~ 296 (501)
+..-+|.|.. +|+...+|..+|.+|+.+.... |.. .+=++.
T Consensus 19 ~~~g~i~d~n----~~~l~~~l~~~G~~v~~~~~v~--Dd~---------------------------------~~i~~~ 59 (144)
T TIGR00177 19 LEPGQIYDSN----GPLLAALLEEAGFNVSRLGIVP--DDP---------------------------------EEIREI 59 (144)
T ss_pred CCCCeEEeCc----HHHHHHHHHHCCCeEEEEeecC--CCH---------------------------------HHHHHH
Confidence 3333566665 6999999999999999887532 210 112345
Q ss_pred HHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEe
Q psy16437 297 IKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVT 339 (501)
Q Consensus 297 ~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s 339 (501)
+.+++..+|+||.+---+. ..--+..+.+.+.. ++++-.+.
T Consensus 60 l~~~~~~~DliIttGG~g~-g~~D~t~~ai~~~g-~~~~~gv~ 100 (144)
T TIGR00177 60 LRKAVDEADVVLTTGGTGV-GPRDVTPEALEELG-EKEIPGFG 100 (144)
T ss_pred HHHHHhCCCEEEECCCCCC-CCCccHHHHHHHhC-cEEEeeec
Confidence 6777889999998744222 11234456666655 55554443
No 237
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=24.30 E-value=81 Score=33.62 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=28.2
Q ss_pred EEEEeCCccchhHHHHHHHHcCCcEEEEecC
Q psy16437 221 RILDLTRIIAGPFCTMLLADLGAEVIKVEQP 251 (501)
Q Consensus 221 rVldl~~~~agp~a~~~LAdlGA~VIKVE~p 251 (501)
-||=++...||..|+..||..|.+|+-||.-
T Consensus 7 DViIVGaGpAG~~aA~~La~~G~~V~llEr~ 37 (428)
T PRK10157 7 DAIIVGAGLAGSVAALVLAREGAQVLVIERG 37 (428)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCeEEEEEcC
Confidence 4888899999999999999999999999963
No 238
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=24.20 E-value=2.2e+02 Score=27.86 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=47.2
Q ss_pred EEeCCccchhHH-HHHHHHcCCcEEEE--ecCCCCCcccccCCCCCCCCCcchhhhhhcCC---ceEEEEeCCChhhHHH
Q psy16437 223 LDLTRIIAGPFC-TMLLADLGAEVIKV--EQPVTGDECRKWGPPFLNNTELSTYFTCVNRN---KKSVCVDFKTPEGQQI 296 (501)
Q Consensus 223 ldl~~~~agp~a-~~~LAdlGA~VIKV--E~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrg---Krsv~lDl~~~~g~~~ 296 (501)
+|.=-.+.-|.- -..|++.||+.|-| |.. .++.|.. -..-..| |-+++|+..+|- +.
T Consensus 71 ~DvHLMv~~P~~~i~~~~~aGad~It~H~Ea~--~~~~~~l-------------~~Ik~~g~~~kaGlalnP~Tp~--~~ 133 (228)
T PRK08091 71 KDVHLMVRDQFEVAKACVAAGADIVTLQVEQT--HDLALTI-------------EWLAKQKTTVLIGLCLCPETPI--SL 133 (228)
T ss_pred EEEEeccCCHHHHHHHHHHhCCCEEEEcccCc--ccHHHHH-------------HHHHHCCCCceEEEEECCCCCH--HH
Confidence 455555555643 46789999999876 542 2222211 1112234 789999998865 67
Q ss_pred HHHHHhhCCeEE-EcCChh
Q psy16437 297 IKDLAKQCDVLV-ENFVPG 314 (501)
Q Consensus 297 ~~~Li~~ADVvi-~n~~pg 314 (501)
+..++...|.|+ -+..||
T Consensus 134 i~~~l~~vD~VLiMtV~PG 152 (228)
T PRK08091 134 LEPYLDQIDLIQILTLDPR 152 (228)
T ss_pred HHHHHhhcCEEEEEEECCC
Confidence 899999999655 443443
No 239
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=24.17 E-value=1.2e+02 Score=31.54 Aligned_cols=98 Identities=12% Similarity=0.051 Sum_probs=62.8
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
..|.|-+|-=++...=|.-.++.|.++|.+|+-..++. .+. ...... |=+ + .
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~-~s~---------------~~A~~~--G~~-v-~-------- 63 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPG-KSF---------------EVAKAD--GFE-V-M-------- 63 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcc-hhh---------------HHHHHc--CCE-E-C--------
Confidence 57999999888888778777899999999998765432 100 001111 111 1 1
Q ss_pred HHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEeecC
Q psy16437 295 QIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFG 342 (501)
Q Consensus 295 ~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~fG 342 (501)
-+.++++.||||+...+...-..+ ++.+.+....|+-+++=..||-
T Consensus 64 -sl~Eaak~ADVV~llLPd~~t~~V-~~~eil~~MK~GaiL~f~hgfn 109 (335)
T PRK13403 64 -SVSEAVRTAQVVQMLLPDEQQAHV-YKAEVEENLREGQMLLFSHGFN 109 (335)
T ss_pred -CHHHHHhcCCEEEEeCCChHHHHH-HHHHHHhcCCCCCEEEECCCcc
Confidence 277899999999988874222221 1344566677877776666765
No 240
>KOG1494|consensus
Probab=24.14 E-value=56 Score=33.14 Aligned_cols=50 Identities=26% Similarity=0.391 Sum_probs=37.0
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcE
Q psy16437 280 NKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLI 334 (501)
Q Consensus 280 gKrsv~lDl~~~~g~~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI 334 (501)
|-+|.+.... |.+-|.+-+..||||| .+-|+-++-|+.-|+|..+|-+||
T Consensus 76 ~T~s~V~g~~---g~~~L~~al~~advVv--IPAGVPRKPGMTRDDLFn~NAgIv 125 (345)
T KOG1494|consen 76 NTNSSVVGFT---GADGLENALKGADVVV--IPAGVPRKPGMTRDDLFNINAGIV 125 (345)
T ss_pred CCCCceeccC---ChhHHHHHhcCCCEEE--ecCCCCCCCCCcHHHhhhcchHHH
Confidence 3344444444 4445889999999999 456788889999999998886654
No 241
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=24.08 E-value=1.6e+02 Score=31.92 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=32.7
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecC
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQP 251 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p 251 (501)
|-.|-+|+=++...||-.++..|+..|.+|+-+|..
T Consensus 138 ~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~ 173 (467)
T TIGR01318 138 VPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRH 173 (467)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 347889999999999999999999999999999853
No 242
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=23.94 E-value=3.5e+02 Score=29.23 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=22.3
Q ss_pred CCCCcEEEEeCCc-cchhHHHHHHH-HcCCcEEEEec
Q psy16437 216 PLSNVRILDLTRI-IAGPFCTMLLA-DLGAEVIKVEQ 250 (501)
Q Consensus 216 pL~GlrVldl~~~-~agp~a~~~LA-dlGA~VIKVE~ 250 (501)
-|.|.||.=.+.. .+- ..+++|. ++|++|+.+-.
T Consensus 322 ~L~GkrvaI~~~~~~~~-~l~~~l~~ElGmevv~~~~ 357 (457)
T TIGR01284 322 RLRGKKVWVWSGGPKLW-HWPRPLEDELGMEVVAVST 357 (457)
T ss_pred HcCCCEEEEECCCcHHH-HHHHHHHHhCCCEEEEEEE
Confidence 5899998754321 211 3456665 89999999853
No 243
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=23.92 E-value=6.2e+02 Score=23.93 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=66.6
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCc-EEEEecCC---CCCcccccCCCCCCCCC------cchhhhhhcCCceEEE
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAE-VIKVEQPV---TGDECRKWGPPFLNNTE------LSTYFTCVNRNKKSVC 285 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~-VIKVE~p~---~gD~~R~~~~~~~~~~~------~~~~f~~~nrgKrsv~ 285 (501)
-|..-+|+=++...-|-.++..|+..|-. |+-++. . ..+-.|+.- ...+-+ ........|..-+-.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~-D~ve~sNL~Rq~~--~~~~iG~~Ka~~~~~~l~~inp~~~i~~ 94 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDF-DVVEPSNLNRQQY--KASQVGEPKTEALKENISEINPYTEIEA 94 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECC-CEEcccccccccC--ChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 48888999999999999999999999995 555543 3 345555421 111111 1122334555444333
Q ss_pred --EeCCChhhHHHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCC-CcEEEEEeecC
Q psy16437 286 --VDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINS-QLIYCSVTGFG 342 (501)
Q Consensus 286 --lDl~~~~g~~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP-~lI~~~~s~fG 342 (501)
-++.. +-+.++++.+|+||+.+. ..-.|.-+ ++.+...++ ..|++ .+|++
T Consensus 95 ~~~~i~~----~~~~~~~~~~DlVi~a~D-n~~~k~~l-~~~~~~~~~~~~ii~-~~g~~ 147 (200)
T TIGR02354 95 YDEKITE----ENIDKFFKDADIVCEAFD-NAEAKAML-VNAVLEKYKDKYLIA-ASGLA 147 (200)
T ss_pred eeeeCCH----hHHHHHhcCCCEEEECCC-CHHHHHHH-HHHHHHHcCCCcEEE-Eeccc
Confidence 23332 456788899999998843 22223222 344444433 34333 35554
No 244
>PRK05993 short chain dehydrogenase; Provisional
Probab=23.81 E-value=2.5e+02 Score=27.49 Aligned_cols=65 Identities=17% Similarity=0.298 Sum_probs=40.7
Q ss_pred chhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHHHHH-h----hC
Q psy16437 230 AGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIKDLA-K----QC 304 (501)
Q Consensus 230 agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~~Li-~----~A 304 (501)
-|-..++.|+..|++||-+-.. .+... . . .+.+=..+.+|+.+++..+.+.+-+ + .-
T Consensus 16 iG~~la~~l~~~G~~Vi~~~r~--~~~~~-------------~-l--~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~i 77 (277)
T PRK05993 16 IGAYCARALQSDGWRVFATCRK--EEDVA-------------A-L--EAEGLEAFQLDYAEPESIAALVAQVLELSGGRL 77 (277)
T ss_pred HHHHHHHHHHHCCCEEEEEECC--HHHHH-------------H-H--HHCCceEEEccCCCHHHHHHHHHHHHHHcCCCc
Confidence 3567788899999999987532 11100 0 1 1123356789999988765544433 2 46
Q ss_pred CeEEEcCC
Q psy16437 305 DVLVENFV 312 (501)
Q Consensus 305 DVvi~n~~ 312 (501)
|+||+|-.
T Consensus 78 d~li~~Ag 85 (277)
T PRK05993 78 DALFNNGA 85 (277)
T ss_pred cEEEECCC
Confidence 99999853
No 245
>KOG3045|consensus
Probab=23.31 E-value=45 Score=33.48 Aligned_cols=15 Identities=27% Similarity=0.645 Sum_probs=9.3
Q ss_pred HhhhCCCcEEEEEee
Q psy16437 326 LSEINSQLIYCSVTG 340 (501)
Q Consensus 326 L~~~nP~lI~~~~s~ 340 (501)
|.+.|+++|.|+|+-
T Consensus 207 L~a~~~~V~~cDm~~ 221 (325)
T KOG3045|consen 207 LVAVNERVIACDMRN 221 (325)
T ss_pred eecCCCceeeccccC
Confidence 445666666666654
No 246
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=23.30 E-value=4e+02 Score=23.90 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=47.4
Q ss_pred ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHHHHHhhCCeE
Q psy16437 228 IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIKDLAKQCDVL 307 (501)
Q Consensus 228 ~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~~Li~~ADVv 307 (501)
...|-...+.|...|.+|+=+-+.. . . ... +.+-+-+..|+.++ +.+.+.++.+|+|
T Consensus 8 G~vG~~l~~~L~~~~~~V~~~~R~~--~----------------~-~~~-~~~~~~~~~d~~d~---~~~~~al~~~d~v 64 (183)
T PF13460_consen 8 GFVGRALAKQLLRRGHEVTALVRSP--S----------------K-AED-SPGVEIIQGDLFDP---DSVKAALKGADAV 64 (183)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESSG--G----------------G-HHH-CTTEEEEESCTTCH---HHHHHHHTTSSEE
T ss_pred ChHHHHHHHHHHHCCCEEEEEecCc--h----------------h-ccc-ccccccceeeehhh---hhhhhhhhhcchh
Confidence 4456777888899999998876421 0 0 111 67778899999877 5688888899999
Q ss_pred EEcCChh
Q psy16437 308 VENFVPG 314 (501)
Q Consensus 308 i~n~~pg 314 (501)
|....+.
T Consensus 65 i~~~~~~ 71 (183)
T PF13460_consen 65 IHAAGPP 71 (183)
T ss_dssp EECCHST
T ss_pred hhhhhhh
Confidence 9999653
No 247
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=23.29 E-value=95 Score=32.37 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=28.0
Q ss_pred EEEEeCCccchhHHHHHHHHcCCcEEEEecC
Q psy16437 221 RILDLTRIIAGPFCTMLLADLGAEVIKVEQP 251 (501)
Q Consensus 221 rVldl~~~~agp~a~~~LAdlGA~VIKVE~p 251 (501)
.|+=++...||-.|+..||..|.+|+-||.-
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 4777888999999999999999999999973
No 248
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=23.27 E-value=1e+02 Score=32.86 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=33.9
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCC
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPV 252 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~ 252 (501)
.|+|.||.=-+..-.|-++++.|.++||+||-|....
T Consensus 204 ~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~ 240 (411)
T COG0334 204 DLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSK 240 (411)
T ss_pred CcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 4999999999999999999999999999999997643
No 249
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=23.24 E-value=2.9e+02 Score=30.52 Aligned_cols=88 Identities=14% Similarity=0.048 Sum_probs=47.5
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCc-ccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDE-CRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~-~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
-|.|.||.=.+.---.--.+++|.++|++++.|-... ++. .+. ..........-|+....++=+ +.
T Consensus 360 ~l~GKrvaI~gdpd~~~~l~~fL~ElGmepv~v~~~~-~~~~~~~---------~l~~ll~~~~~~~~~~v~~~~---Dl 426 (515)
T TIGR01286 360 WLHGKRFAIYGDPDFVMGLVRFVLELGCEPVHILCTN-GTKRWKA---------EMKALLAASPYGQNATVWIGK---DL 426 (515)
T ss_pred HhcCceEEEECCHHHHHHHHHHHHHCCCEEEEEEeCC-CCHHHHH---------HHHHHHhcCCCCCccEEEeCC---CH
Confidence 4889999766653222244778889999999987654 221 000 001111111224334333322 44
Q ss_pred HHHHHHHhh--CCeEEEcCChhhh
Q psy16437 295 QIIKDLAKQ--CDVLVENFVPGKL 316 (501)
Q Consensus 295 ~~~~~Li~~--ADVvi~n~~pg~l 316 (501)
..++++|.. .|++|-|.....+
T Consensus 427 ~~l~~~l~~~~~DlliG~s~~k~~ 450 (515)
T TIGR01286 427 WHLRSLVFTEPVDFLIGNSYGKYI 450 (515)
T ss_pred HHHHHHHhhcCCCEEEECchHHHH
Confidence 445666544 8888877665444
No 250
>PRK09072 short chain dehydrogenase; Provisional
Probab=23.22 E-value=4e+02 Score=25.60 Aligned_cols=79 Identities=20% Similarity=0.211 Sum_probs=47.1
Q ss_pred CCcEEEEeC--CccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhh--hcCCceEEEEeCCChhh
Q psy16437 218 SNVRILDLT--RIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTC--VNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 218 ~GlrVldl~--~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~--~nrgKrsv~lDl~~~~g 293 (501)
.|-+||=.+ ..+ |-..++.|++.|++|+-+.... +..+.. ... .+..-..+.+|+.+++.
T Consensus 4 ~~~~vlItG~s~~i-G~~ia~~l~~~G~~V~~~~r~~--~~~~~~-------------~~~~~~~~~~~~~~~D~~d~~~ 67 (263)
T PRK09072 4 KDKRVLLTGASGGI-GQALAEALAAAGARLLLVGRNA--EKLEAL-------------AARLPYPGRHRWVVADLTSEAG 67 (263)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEECCH--HHHHHH-------------HHHHhcCCceEEEEccCCCHHH
Confidence 344444443 334 5667788889999999886421 111110 111 11123467899999998
Q ss_pred HHHHHHHH---hhCCeEEEcCC
Q psy16437 294 QQIIKDLA---KQCDVLVENFV 312 (501)
Q Consensus 294 ~~~~~~Li---~~ADVvi~n~~ 312 (501)
.+.+.+-+ ...|+||+|--
T Consensus 68 ~~~~~~~~~~~~~id~lv~~ag 89 (263)
T PRK09072 68 REAVLARAREMGGINVLINNAG 89 (263)
T ss_pred HHHHHHHHHhcCCCCEEEECCC
Confidence 76665555 35799998853
No 251
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.22 E-value=3.4e+02 Score=26.38 Aligned_cols=81 Identities=19% Similarity=0.048 Sum_probs=47.6
Q ss_pred CCCcEEEEeCC----ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChh
Q psy16437 217 LSNVRILDLTR----IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPE 292 (501)
Q Consensus 217 L~GlrVldl~~----~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~ 292 (501)
|+|-+||=.+. .| |-..++.|++.|+.|+-+-.. + |.. . .....-... ..+..+.+|+.+++
T Consensus 4 l~~k~vlItGas~~~GI-G~a~a~~l~~~G~~v~~~~~~---~--~~~--~-----~~~~~~~~~-~~~~~~~~Dv~d~~ 69 (260)
T PRK06997 4 LAGKRILITGLLSNRSI-AYGIAKACKREGAELAFTYVG---D--RFK--D-----RITEFAAEF-GSDLVFPCDVASDE 69 (260)
T ss_pred cCCcEEEEeCCCCCCcH-HHHHHHHHHHCCCeEEEEccc---h--HHH--H-----HHHHHHHhc-CCcceeeccCCCHH
Confidence 56666665551 33 567788899999999876321 1 100 0 000011111 12346789999999
Q ss_pred hHHHHHHHH----hhCCeEEEcC
Q psy16437 293 GQQIIKDLA----KQCDVLVENF 311 (501)
Q Consensus 293 g~~~~~~Li----~~ADVvi~n~ 311 (501)
..+.+.+-+ ..-|+||.|-
T Consensus 70 ~v~~~~~~~~~~~g~iD~lvnnA 92 (260)
T PRK06997 70 QIDALFASLGQHWDGLDGLVHSI 92 (260)
T ss_pred HHHHHHHHHHHHhCCCcEEEEcc
Confidence 886555443 3489999985
No 252
>PRK07576 short chain dehydrogenase; Provisional
Probab=23.17 E-value=3.6e+02 Score=26.15 Aligned_cols=84 Identities=13% Similarity=0.070 Sum_probs=48.5
Q ss_pred CCCCCcEEEEeCC--ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChh
Q psy16437 215 LPLSNVRILDLTR--IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPE 292 (501)
Q Consensus 215 ~pL~GlrVldl~~--~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~ 292 (501)
..|+|-+||=.+. .| |-..++.|+..|++||-+... .+..+.. .......+..-..+.+|+.+++
T Consensus 5 ~~~~~k~ilItGasggI-G~~la~~l~~~G~~V~~~~r~--~~~~~~~----------~~~~~~~~~~~~~~~~Dv~~~~ 71 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGI-NLGIAQAFARAGANVAVASRS--QEKVDAA----------VAQLQQAGPEGLGVSADVRDYA 71 (264)
T ss_pred ccCCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCC--HHHHHHH----------HHHHHHhCCceEEEECCCCCHH
Confidence 3577777776654 33 456677788999999988642 1111110 0011111222255789999888
Q ss_pred hHHHHHHHH----hhCCeEEEcC
Q psy16437 293 GQQIIKDLA----KQCDVLVENF 311 (501)
Q Consensus 293 g~~~~~~Li----~~ADVvi~n~ 311 (501)
..+.+.+-+ ...|+||+|-
T Consensus 72 ~i~~~~~~~~~~~~~iD~vi~~a 94 (264)
T PRK07576 72 AVEAAFAQIADEFGPIDVLVSGA 94 (264)
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 764443332 2469999875
No 253
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=22.91 E-value=2.6e+02 Score=23.54 Aligned_cols=87 Identities=17% Similarity=0.270 Sum_probs=58.1
Q ss_pred hhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHHHHHhh--CCeEE
Q psy16437 231 GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIKDLAKQ--CDVLV 308 (501)
Q Consensus 231 gp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~~Li~~--ADVvi 308 (501)
|=++.+++..+|+.||-+++- ..|. . +. ..-| -...+|-++++=.+.++++... .|+||
T Consensus 3 G~~a~q~ak~~G~~vi~~~~~----~~k~------------~-~~-~~~G-a~~~~~~~~~~~~~~i~~~~~~~~~d~vi 63 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDRS----EEKL------------E-LA-KELG-ADHVIDYSDDDFVEQIRELTGGRGVDVVI 63 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEESS----HHHH------------H-HH-HHTT-ESEEEETTTSSHHHHHHHHTTTSSEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEECC----HHHH------------H-HH-Hhhc-ccccccccccccccccccccccccceEEE
Confidence 557889999999999999852 1111 0 11 1122 3456888777778888888875 99999
Q ss_pred EcCC-hhhhhhcCCCHHHHhhhCCCcEEEEEeecC
Q psy16437 309 ENFV-PGKLDRLNLGYKHLSEINSQLIYCSVTGFG 342 (501)
Q Consensus 309 ~n~~-pg~l~~lGl~~~~L~~~nP~lI~~~~s~fG 342 (501)
+... +..++ ..+.-+.|+=.++.+..++
T Consensus 64 d~~g~~~~~~------~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 64 DCVGSGDTLQ------EAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ESSSSHHHHH------HHHHHEEEEEEEEEESSTS
T ss_pred EecCcHHHHH------HHHHHhccCCEEEEEEccC
Confidence 9988 65554 3455566766665555554
No 254
>PRK07063 short chain dehydrogenase; Provisional
Probab=22.78 E-value=4.2e+02 Score=25.33 Aligned_cols=84 Identities=18% Similarity=0.031 Sum_probs=48.4
Q ss_pred CCCcEEEEeCCc-cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCC--ceEEEEeCCChhh
Q psy16437 217 LSNVRILDLTRI-IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRN--KKSVCVDFKTPEG 293 (501)
Q Consensus 217 L~GlrVldl~~~-~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrg--Krsv~lDl~~~~g 293 (501)
|+|-+||=.+.. --|-.+++.|++.|++||-+.... +..... .......+.+ -..+.+|+.+++.
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~--~~~~~~----------~~~~~~~~~~~~~~~~~~Dl~~~~~ 72 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDA--ALAERA----------AAAIARDVAGARVLAVPADVTDAAS 72 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHH----------HHHHHhccCCceEEEEEccCCCHHH
Confidence 566666655532 236778899999999999875421 111100 0001111123 2467789999887
Q ss_pred HHHHHHHH----hhCCeEEEcCC
Q psy16437 294 QQIIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 294 ~~~~~~Li----~~ADVvi~n~~ 312 (501)
.+.+.+-+ ...|+||+|-.
T Consensus 73 ~~~~~~~~~~~~g~id~li~~ag 95 (260)
T PRK07063 73 VAAAVAAAEEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHHHHHHHHHhCCCcEEEECCC
Confidence 65443332 25899999864
No 255
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=22.74 E-value=1.3e+02 Score=31.52 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=28.2
Q ss_pred EEEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 221 RILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 221 rVldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
+|+=++..+.|-.++..|+..|.+|+-||.
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g~~V~vle~ 32 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDR 32 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 688899999999999999999999999996
No 256
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=22.73 E-value=4.5e+02 Score=25.37 Aligned_cols=85 Identities=18% Similarity=0.015 Sum_probs=49.0
Q ss_pred CCCcEEEEeCC----ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChh
Q psy16437 217 LSNVRILDLTR----IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPE 292 (501)
Q Consensus 217 L~GlrVldl~~----~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~ 292 (501)
|+|-+||=.+. .| |-..++.|+..|++|+-+-... +..|... . .... ......-..+.+|+.+++
T Consensus 4 l~~k~~lItGas~~~GI-G~aia~~la~~G~~v~~~~~~~--~~~~~~~--~-----~~~~-~~~~~~~~~~~~Dl~d~~ 72 (258)
T PRK07370 4 LTGKKALVTGIANNRSI-AWGIAQQLHAAGAELGITYLPD--EKGRFEK--K-----VREL-TEPLNPSLFLPCDVQDDA 72 (258)
T ss_pred cCCcEEEEeCCCCCCch-HHHHHHHHHHCCCEEEEEecCc--ccchHHH--H-----HHHH-HhccCcceEeecCcCCHH
Confidence 56666666662 44 6788899999999997663221 1111100 0 0000 000011246789999999
Q ss_pred hHHHHHHHHh----hCCeEEEcCC
Q psy16437 293 GQQIIKDLAK----QCDVLVENFV 312 (501)
Q Consensus 293 g~~~~~~Li~----~ADVvi~n~~ 312 (501)
..+.+.+-+. .-|+||.|--
T Consensus 73 ~v~~~~~~~~~~~g~iD~lv~nag 96 (258)
T PRK07370 73 QIEETFETIKQKWGKLDILVHCLA 96 (258)
T ss_pred HHHHHHHHHHHHcCCCCEEEEccc
Confidence 9765544442 4799998864
No 257
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=22.72 E-value=1.2e+02 Score=26.45 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEeecCCCCCCCCCCcchhHHhhhhccccccC
Q psy16437 291 PEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFGSKGPYKDRPGYDIIAASIGGLLHITG 368 (501)
Q Consensus 291 ~~g~~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~fG~~Gp~~~~~g~d~~~~A~sG~~~~~g 368 (501)
....+.+.++++.+|++|....+ .++.+.|... |+|=++...|-|-+ -+|.-....-|+.-.+.
T Consensus 26 ~~~~~~~~~~l~~~d~ii~~~~~------~~~~~~l~~~-~~Lk~I~~~~~G~d-------~id~~~a~~~gI~V~n~ 89 (133)
T PF00389_consen 26 SPSEEELAERLKDADAIIVGSGT------PLTAEVLEAA-PNLKLISTAGAGVD-------NIDLEAAKERGIPVTNV 89 (133)
T ss_dssp SSSHHHHHHHHTTESEEEESTTS------TBSHHHHHHH-TT-SEEEESSSSCT-------TB-HHHHHHTTSEEEE-
T ss_pred CCCHHHHHHHhCCCeEEEEcCCC------CcCHHHHhcc-ceeEEEEEcccccC-------cccHHHHhhCeEEEEEe
Confidence 55666899999999999987776 4677777776 88887777776643 26666677788776553
No 258
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=22.64 E-value=19 Score=38.20 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHhcCCH
Q psy16437 24 ENRELLCKEIEAKTMEKTT 42 (501)
Q Consensus 24 ~~~~eL~~~i~~~f~~~t~ 42 (501)
.....+...|.+-|.+++.
T Consensus 261 ~~sr~~l~ei~~~f~~~PF 279 (389)
T TIGR00495 261 KASRAFFSEIERRFDAMPF 279 (389)
T ss_pred HHHHHHHHHHHHhCCCCCc
Confidence 3334555566666666553
No 259
>COG4332 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.63 E-value=82 Score=29.62 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=22.2
Q ss_pred HHHHHhhcCCChHHHHHHhhhchhhhh
Q psy16437 116 DYVLKDLLNYDETTIAKLKEKKILGLI 142 (501)
Q Consensus 116 ~eVL~ellG~s~~ei~~L~~~Gvv~~~ 142 (501)
+.+|++.||+|..+++.|.+.|.|...
T Consensus 142 ~~Ll~seL~LSrS~lq~lie~g~Irgd 168 (203)
T COG4332 142 DRLLASELGLSRSELQRLIETGQIRGD 168 (203)
T ss_pred HHHHHHHhCcCHHHHHHHHHcCceeec
Confidence 456776689999999999999988633
No 260
>PRK07806 short chain dehydrogenase; Provisional
Probab=22.58 E-value=4.7e+02 Score=24.71 Aligned_cols=85 Identities=20% Similarity=0.125 Sum_probs=47.6
Q ss_pred CCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 217 LSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 217 L~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
++|-+||=.+. .--|-...+.|+..|++|+-+-... ....... .........+-..+.+|+.+++..+
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~-~~~~~~~----------~~~l~~~~~~~~~~~~D~~~~~~~~ 72 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK-APRANKV----------VAEIEAAGGRASAVGADLTDEESVA 72 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc-hHhHHHH----------HHHHHhcCCceEEEEcCCCCHHHHH
Confidence 56667777664 2336667778888999998763211 0000000 0000111112256778999999865
Q ss_pred HHHH-HH---hhCCeEEEcCC
Q psy16437 296 IIKD-LA---KQCDVLVENFV 312 (501)
Q Consensus 296 ~~~~-Li---~~ADVvi~n~~ 312 (501)
.+.+ +. ...|+||.|.-
T Consensus 73 ~~~~~~~~~~~~~d~vi~~ag 93 (248)
T PRK07806 73 ALMDTAREEFGGLDALVLNAS 93 (248)
T ss_pred HHHHHHHHhCCCCcEEEECCC
Confidence 4433 32 25799998874
No 261
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=22.55 E-value=1e+02 Score=23.79 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=23.2
Q ss_pred eCCccchhHHHHHHHHcCCcEEEEecC
Q psy16437 225 LTRIIAGPFCTMLLADLGAEVIKVEQP 251 (501)
Q Consensus 225 l~~~~agp~a~~~LAdlGA~VIKVE~p 251 (501)
++..++|=.++..|+..|.+|.-+|.-
T Consensus 2 iGaG~sGl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred EeeCHHHHHHHHHHHHCCCcEEEEecC
Confidence 456788999999999999999999964
No 262
>PRK08643 acetoin reductase; Validated
Probab=22.52 E-value=2e+02 Score=27.49 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=40.1
Q ss_pred hhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHH-HHHHHh---hCCe
Q psy16437 231 GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQI-IKDLAK---QCDV 306 (501)
Q Consensus 231 gp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~-~~~Li~---~ADV 306 (501)
|-..++.|++.|++|+-+.... +..... .......+.+-..+.+|+.+++..+. +.++.+ ..|+
T Consensus 15 G~~la~~l~~~G~~v~~~~r~~--~~~~~~----------~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 82 (256)
T PRK08643 15 GFAIAKRLVEDGFKVAIVDYNE--ETAQAA----------ADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLNV 82 (256)
T ss_pred HHHHHHHHHHCCCEEEEEeCCH--HHHHHH----------HHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 5677888899999998886421 111000 00011111222356789999987543 333332 4799
Q ss_pred EEEcCC
Q psy16437 307 LVENFV 312 (501)
Q Consensus 307 vi~n~~ 312 (501)
||+|-.
T Consensus 83 vi~~ag 88 (256)
T PRK08643 83 VVNNAG 88 (256)
T ss_pred EEECCC
Confidence 999874
No 263
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=22.50 E-value=2e+02 Score=25.86 Aligned_cols=20 Identities=40% Similarity=0.567 Sum_probs=17.3
Q ss_pred hhHHHHHHHHcCCcEEEEec
Q psy16437 231 GPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 231 gp~a~~~LAdlGA~VIKVE~ 250 (501)
+|+...+|.++|++|+.+..
T Consensus 22 ~~~l~~~l~~~G~~v~~~~~ 41 (152)
T cd00886 22 GPALVELLEEAGHEVVAYEI 41 (152)
T ss_pred HHHHHHHHHHcCCeeeeEEE
Confidence 68889999999999988764
No 264
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.27 E-value=2.7e+02 Score=27.07 Aligned_cols=84 Identities=15% Similarity=0.028 Sum_probs=46.9
Q ss_pred CCCCcEEEEeCCc---cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChh
Q psy16437 216 PLSNVRILDLTRI---IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPE 292 (501)
Q Consensus 216 pL~GlrVldl~~~---~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~ 292 (501)
-|+|-.||=.+.. -=|-..++.|+..||+||-+-.- +..... ....-... ..+..+.+|+.+++
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~---~~~~~~---------~~~l~~~~-g~~~~~~~Dv~~~~ 71 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS---EVLEKR---------VKPLAEEI-GCNFVSELDVTNPK 71 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc---hHHHHH---------HHHHHHhc-CCceEEEccCCCHH
Confidence 3566555544431 12556779999999999876321 100000 00000011 12334679999999
Q ss_pred hHHHHHHHH----hhCCeEEEcCC
Q psy16437 293 GQQIIKDLA----KQCDVLVENFV 312 (501)
Q Consensus 293 g~~~~~~Li----~~ADVvi~n~~ 312 (501)
..+.+.+-+ ..-||||.|.-
T Consensus 72 ~v~~~~~~~~~~~g~iDilVnnag 95 (260)
T PRK06603 72 SISNLFDDIKEKWGSFDFLLHGMA 95 (260)
T ss_pred HHHHHHHHHHHHcCCccEEEEccc
Confidence 987665544 34799998863
No 265
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=22.25 E-value=97 Score=33.10 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=29.1
Q ss_pred CCCCCCcEEEEeCCccc-hhHHHHHHHHcCCcEEEE
Q psy16437 214 SLPLSNVRILDLTRIIA-GPFCTMLLADLGAEVIKV 248 (501)
Q Consensus 214 ~~pL~GlrVldl~~~~a-gp~a~~~LAdlGA~VIKV 248 (501)
.+||+|+||....++-+ -..-.+.|.++||+|.-.
T Consensus 27 ~~pl~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~ 62 (406)
T TIGR00936 27 EKPLKGARIAACLHVTVETAVLIETLVAGGAEVAWT 62 (406)
T ss_pred cCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEE
Confidence 47999999999888764 346678899999999876
No 266
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=22.22 E-value=1.3e+02 Score=32.19 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=33.6
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
.|..+.+|+=++...||-.|+..|+..|.+|+-+|.
T Consensus 129 ~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~ 164 (449)
T TIGR01316 129 APSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEA 164 (449)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEec
Confidence 467889999999999999999999999999999996
No 267
>PRK12827 short chain dehydrogenase; Provisional
Probab=22.22 E-value=4e+02 Score=25.01 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=47.0
Q ss_pred CCCcEEEEeC--CccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 217 LSNVRILDLT--RIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 217 L~GlrVldl~--~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
|.+.+||=.+ ..+ |-..++.|++.|++|+-+......+.... . .....+...+..=..+..|+.+++..
T Consensus 4 ~~~~~ilItGasg~i-G~~la~~l~~~g~~v~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~Dl~~~~~~ 74 (249)
T PRK12827 4 LDSRRVLITGGSGGL-GRAIAVRLAADGADVIVLDIHPMRGRAEA------D--AVAAGIEAAGGKALGLAFDVRDFAAT 74 (249)
T ss_pred cCCCEEEEECCCChH-HHHHHHHHHHCCCeEEEEcCcccccHHHH------H--HHHHHHHhcCCcEEEEEccCCCHHHH
Confidence 4455555443 334 66778889999999988764221110000 0 00000111111224678999998876
Q ss_pred HHHH-HHHh---hCCeEEEcCC
Q psy16437 295 QIIK-DLAK---QCDVLVENFV 312 (501)
Q Consensus 295 ~~~~-~Li~---~ADVvi~n~~ 312 (501)
+.+. ++.+ ..|+||+|.-
T Consensus 75 ~~~~~~~~~~~~~~d~vi~~ag 96 (249)
T PRK12827 75 RAALDAGVEEFGRLDILVNNAG 96 (249)
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 4443 3333 4799998864
No 268
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=22.20 E-value=3.5e+02 Score=28.84 Aligned_cols=104 Identities=10% Similarity=0.045 Sum_probs=56.5
Q ss_pred CCCcEEEEeCC-----c--cch-hHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeC
Q psy16437 217 LSNVRILDLTR-----I--IAG-PFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDF 288 (501)
Q Consensus 217 L~GlrVldl~~-----~--~ag-p~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl 288 (501)
|+|++|.=++. . ..- =.-..+|+-+|++|.-+-|+.+ ++. +.... ...-+...+-++-.++=|
T Consensus 185 l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~-~~~----~~i~~---~a~~~~~~~G~~i~~~~d- 255 (395)
T PRK07200 185 LKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGY-DLM----PEVVE---VAKKNAKASGGSFRQVNS- 255 (395)
T ss_pred cCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCcc-CCC----HHHHH---HHHHHHHHcCCeEEEEcC-
Confidence 78888884322 1 111 2335677899999998887652 110 00000 000011122233333323
Q ss_pred CChhhHHHHHHHHhhCCeEEEcCCh-------------------------------hhhhhcCCCHHHHhhhCCC-cEEE
Q psy16437 289 KTPEGQQIIKDLAKQCDVLVENFVP-------------------------------GKLDRLNLGYKHLSEINSQ-LIYC 336 (501)
Q Consensus 289 ~~~~g~~~~~~Li~~ADVvi~n~~p-------------------------------g~l~~lGl~~~~L~~~nP~-lI~~ 336 (501)
+.+-+++||||.+.--. ..+..++++.+-+...+|+ .|+.
T Consensus 256 --------~~eav~~aDvVYtd~W~sm~~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~M 327 (395)
T PRK07200 256 --------MEEAFKDADIVYPKSWAPYKVMEERTELYRAGDHEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYM 327 (395)
T ss_pred --------HHHHhCCCCEEEEcCeeecccccccccccccccchhhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEE
Confidence 55788999999976210 1245678888888777785 6665
Q ss_pred E
Q psy16437 337 S 337 (501)
Q Consensus 337 ~ 337 (501)
+
T Consensus 328 H 328 (395)
T PRK07200 328 H 328 (395)
T ss_pred C
Confidence 3
No 269
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=22.20 E-value=1.7e+02 Score=25.82 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=55.0
Q ss_pred CcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHH
Q psy16437 219 NVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIK 298 (501)
Q Consensus 219 GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~ 298 (501)
-+||-=++..-.|..-++.|...|-+|+-|.+.. .. +.-....--+. .-.+|+ .
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs--~~--------------sa~~a~~~~~~-~~~~~~---------~ 63 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRS--PA--------------SAERAAAFIGA-GAILDL---------E 63 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH--H---------------HHHHHHC--TT------T---------T
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC--cc--------------ccccccccccc-cccccc---------c
Confidence 4677778888888999999999999999887643 00 11111111111 122332 3
Q ss_pred HHHhhCCeEEEcCChhhhhhcCCCHHHHhhh---CCCcEEEEEeec
Q psy16437 299 DLAKQCDVLVENFVPGKLDRLNLGYKHLSEI---NSQLIYCSVTGF 341 (501)
Q Consensus 299 ~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~---nP~lI~~~~s~f 341 (501)
++++.||+++-..+...++.. .+.|... .|+=|+++.||=
T Consensus 64 ~~~~~aDlv~iavpDdaI~~v---a~~La~~~~~~~g~iVvHtSGa 106 (127)
T PF10727_consen 64 EILRDADLVFIAVPDDAIAEV---AEQLAQYGAWRPGQIVVHTSGA 106 (127)
T ss_dssp GGGCC-SEEEE-S-CCHHHHH---HHHHHCC--S-TT-EEEES-SS
T ss_pred cccccCCEEEEEechHHHHHH---HHHHHHhccCCCCcEEEECCCC
Confidence 578899999999998877764 3555553 588888898874
No 270
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=22.10 E-value=1e+02 Score=32.88 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=30.1
Q ss_pred CCCcE-EEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 217 LSNVR-ILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 217 L~Glr-Vldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
++++| |||..+..+++++..+|..+|++|+-+..
T Consensus 163 ~~~~kVvvD~~nG~~~~~~~~ll~~lg~~v~~ln~ 197 (429)
T PRK14322 163 LTGEMVSLDLANGATTTTAKEVFEFLGAKVEVFND 197 (429)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHcCCEEEEECC
Confidence 55666 78999999999999999999999998853
No 271
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=22.05 E-value=87 Score=32.73 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=29.4
Q ss_pred cEEEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 220 lrVldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
..|+=++..+||..++..|+..|-+|+-||.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~ 49 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEA 49 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEec
Confidence 5699999999999999999999999999996
No 272
>PRK07233 hypothetical protein; Provisional
Probab=21.89 E-value=91 Score=32.60 Aligned_cols=31 Identities=32% Similarity=0.238 Sum_probs=28.7
Q ss_pred EEEEeCCccchhHHHHHHHHcCCcEEEEecC
Q psy16437 221 RILDLTRIIAGPFCTMLLADLGAEVIKVEQP 251 (501)
Q Consensus 221 rVldl~~~~agp~a~~~LAdlGA~VIKVE~p 251 (501)
||+=++..++|=.|+..|+..|.+|+-+|.-
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeC
Confidence 5788999999999999999999999999964
No 273
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=21.87 E-value=3.4e+02 Score=24.98 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=45.5
Q ss_pred CCCCCcEEEEeCCc-cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTRI-IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~~-~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
-+|+|-+|+=++.. +-|--.+.+|...||.|+-..+-.
T Consensus 32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T----------------------------------------- 70 (160)
T PF02882_consen 32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT----------------------------------------- 70 (160)
T ss_dssp -STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS-----------------------------------------
T ss_pred CCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC-----------------------------------------
Confidence 36999999988875 456555677777799998875421
Q ss_pred HHHHHHHHhhCCeEEEcCC-hhhhhhcCCCHHHHhhhCCCcEEEEEeec
Q psy16437 294 QQIIKDLAKQCDVLVENFV-PGKLDRLNLGYKHLSEINSQLIYCSVTGF 341 (501)
Q Consensus 294 ~~~~~~Li~~ADVvi~n~~-pg~l~~lGl~~~~L~~~nP~lI~~~~s~f 341 (501)
+-+.+.++.|||||...- |+. +..+ -++|+.|.+++.-.
T Consensus 71 -~~l~~~~~~ADIVVsa~G~~~~-----i~~~---~ik~gavVIDvG~~ 110 (160)
T PF02882_consen 71 -KNLQEITRRADIVVSAVGKPNL-----IKAD---WIKPGAVVIDVGIN 110 (160)
T ss_dssp -SSHHHHHTTSSEEEE-SSSTT------B-GG---GS-TTEEEEE--CE
T ss_pred -CcccceeeeccEEeeeeccccc-----cccc---cccCCcEEEecCCc
Confidence 115678899999996553 332 2223 34688888877544
No 274
>PRK07588 hypothetical protein; Provisional
Probab=21.83 E-value=1.1e+02 Score=31.94 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=28.7
Q ss_pred cEEEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 220 lrVldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
++|+=++..++|-.++..|+..|.+|+-+|.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~ 31 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIER 31 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeC
Confidence 3688899999999999999999999999995
No 275
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=21.83 E-value=1.1e+02 Score=32.85 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=31.7
Q ss_pred CCCcE-EEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcc
Q psy16437 217 LSNVR-ILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDEC 257 (501)
Q Consensus 217 L~Glr-Vldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~ 257 (501)
+.++| |+|..+..+++++..+|..+|++|+.+..- +|+.
T Consensus 171 ~~~~kivvd~~~G~~~~~~~~il~~lg~~v~~~~~~--~dg~ 210 (461)
T cd05800 171 EAGLKVVVDPMYGAGAGYLEELLRGAGVDVEEIRAE--RDPL 210 (461)
T ss_pred cCCceEEEeCCCCCcHHHHHHHHHHcCCCEEEeeCC--cCCC
Confidence 35666 679999999999999999999999988753 4543
No 276
>PRK07045 putative monooxygenase; Reviewed
Probab=21.79 E-value=1e+02 Score=31.92 Aligned_cols=31 Identities=35% Similarity=0.280 Sum_probs=29.2
Q ss_pred cEEEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 220 lrVldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
.+|+=++..++|..++..|+..|-+|+-||.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~ 36 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVER 36 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeC
Confidence 4799999999999999999999999999995
No 277
>PRK06484 short chain dehydrogenase; Validated
Probab=21.78 E-value=2.2e+02 Score=30.75 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=41.8
Q ss_pred hhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHHHHH----hhCCe
Q psy16437 231 GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIKDLA----KQCDV 306 (501)
Q Consensus 231 gp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~~Li----~~ADV 306 (501)
|-..++.|++.|+.||-+.... +... ..-...+.+-..+.+|+.+++..+.+.+-+ ..-|+
T Consensus 18 G~aia~~l~~~G~~V~~~~r~~--~~~~-------------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~ 82 (520)
T PRK06484 18 GRAACQRFARAGDQVVVADRNV--ERAR-------------ERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDV 82 (520)
T ss_pred HHHHHHHHHHCCCEEEEEeCCH--HHHH-------------HHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence 5677889999999999885421 1110 001112223345889999998865544443 34899
Q ss_pred EEEcC
Q psy16437 307 LVENF 311 (501)
Q Consensus 307 vi~n~ 311 (501)
||.|.
T Consensus 83 li~na 87 (520)
T PRK06484 83 LVNNA 87 (520)
T ss_pred EEECC
Confidence 99995
No 278
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=21.51 E-value=99 Score=33.16 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=28.3
Q ss_pred EEEEeCCccchhHHHHHHHHcCCcEEEEecC
Q psy16437 221 RILDLTRIIAGPFCTMLLADLGAEVIKVEQP 251 (501)
Q Consensus 221 rVldl~~~~agp~a~~~LAdlGA~VIKVE~p 251 (501)
-||=++..+||-.|+-.+++.|++|+-||.-
T Consensus 6 DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~ 36 (466)
T PRK08274 6 DVLVIGGGNAALCAALAAREAGASVLLLEAA 36 (466)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4888899999999999999999999999963
No 279
>PRK07577 short chain dehydrogenase; Provisional
Probab=21.50 E-value=3.9e+02 Score=24.96 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=39.2
Q ss_pred hhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHH-HHHHHh--hCCeE
Q psy16437 231 GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQI-IKDLAK--QCDVL 307 (501)
Q Consensus 231 gp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~-~~~Li~--~ADVv 307 (501)
|-..++.|+..|++|+-+.... .. +..++.+.+|+.+++..+. +.++.+ ..|+|
T Consensus 16 G~~ia~~l~~~G~~v~~~~r~~-~~----------------------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~v 72 (234)
T PRK07577 16 GLALSLRLANLGHQVIGIARSA-ID----------------------DFPGELFACDLADIEQTAATLAQINEIHPVDAI 72 (234)
T ss_pred HHHHHHHHHHCCCEEEEEeCCc-cc----------------------ccCceEEEeeCCCHHHHHHHHHHHHHhCCCcEE
Confidence 5677889999999999886532 10 0122467899999887543 333333 46999
Q ss_pred EEcCC
Q psy16437 308 VENFV 312 (501)
Q Consensus 308 i~n~~ 312 (501)
|+|--
T Consensus 73 i~~ag 77 (234)
T PRK07577 73 VNNVG 77 (234)
T ss_pred EECCC
Confidence 98764
No 280
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.46 E-value=4.3e+02 Score=25.86 Aligned_cols=83 Identities=14% Similarity=0.017 Sum_probs=48.9
Q ss_pred CCCcEEEEeCCc---cchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 217 LSNVRILDLTRI---IAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 217 L~GlrVldl~~~---~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
|+|-+||=.+.. -=|-..++.|+..||.|+-+.... ...+.. ...-...+ ....+.+|+.+++.
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~--~~~~~~----------~~~~~~~g-~~~~~~~Dv~d~~~ 71 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGE--ALGKRV----------KPLAESLG-SDFVLPCDVEDIAS 71 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCch--HHHHHH----------HHHHHhcC-CceEEeCCCCCHHH
Confidence 667666666642 236788999999999998774210 000000 00001111 23467899999988
Q ss_pred HHHHHHHH-h---hCCeEEEcCC
Q psy16437 294 QQIIKDLA-K---QCDVLVENFV 312 (501)
Q Consensus 294 ~~~~~~Li-~---~ADVvi~n~~ 312 (501)
.+.+.+-+ + .-|+||.|--
T Consensus 72 v~~~~~~~~~~~g~iD~lVnnAG 94 (271)
T PRK06505 72 VDAVFEALEKKWGKLDFVVHAIG 94 (271)
T ss_pred HHHHHHHHHHHhCCCCEEEECCc
Confidence 65444433 2 4799999864
No 281
>PRK06953 short chain dehydrogenase; Provisional
Probab=21.22 E-value=3.4e+02 Score=25.33 Aligned_cols=64 Identities=13% Similarity=0.013 Sum_probs=38.8
Q ss_pred hhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHHHHHh--hCCeEE
Q psy16437 231 GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIKDLAK--QCDVLV 308 (501)
Q Consensus 231 gp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~~Li~--~ADVvi 308 (501)
|-..++.|++.|++|+-+.... +.. .... +.+-+.+..|+.+++..+.+.+-+. ..|+||
T Consensus 14 G~~la~~L~~~G~~v~~~~r~~--~~~--------------~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi 75 (222)
T PRK06953 14 GREFVRQYRADGWRVIATARDA--AAL--------------AALQ--ALGAEALALDVADPASVAGLAWKLDGEALDAAV 75 (222)
T ss_pred hHHHHHHHHhCCCEEEEEECCH--HHH--------------HHHH--hccceEEEecCCCHHHHHHHHHHhcCCCCCEEE
Confidence 4456677788999998885421 110 0011 1233468999999987765544343 368888
Q ss_pred EcCC
Q psy16437 309 ENFV 312 (501)
Q Consensus 309 ~n~~ 312 (501)
+|--
T Consensus 76 ~~ag 79 (222)
T PRK06953 76 YVAG 79 (222)
T ss_pred ECCC
Confidence 7653
No 282
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=21.17 E-value=1.1e+02 Score=33.03 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=29.2
Q ss_pred cEEEEeCCccchhHHHHHHHHcCCcEEEEecC
Q psy16437 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQP 251 (501)
Q Consensus 220 lrVldl~~~~agp~a~~~LAdlGA~VIKVE~p 251 (501)
..|+=++...||..|+..||..|.+|+-||.-
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~ 71 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERK 71 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 46899999999999999999999999999963
No 283
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.13 E-value=70 Score=21.83 Aligned_cols=31 Identities=3% Similarity=0.044 Sum_probs=25.5
Q ss_pred HhcCCHHHHHHHhhcCCCeEEeeC-ChhHhhh
Q psy16437 37 TMEKTTEEWLLIFQGVSFPYAQVN-SISQVFA 67 (501)
Q Consensus 37 f~~~t~~ew~~~l~~~~VP~apV~-t~~Evl~ 67 (501)
|.+.+.+++.+-|..+||+..+-. +-+|+++
T Consensus 1 fdtWs~~~L~~wL~~~gi~~~~~~~~rd~Ll~ 32 (38)
T PF10281_consen 1 FDTWSDSDLKSWLKSHGIPVPKSAKTRDELLK 32 (38)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCCCCHHHHHH
Confidence 346788889999999999999887 8888775
No 284
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=21.03 E-value=3.2e+02 Score=26.10 Aligned_cols=52 Identities=13% Similarity=0.256 Sum_probs=40.4
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhC----CeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEE
Q psy16437 280 NKKSVCVDFKTPEGQQIIKDLAKQC----DVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSV 338 (501)
Q Consensus 280 gKrsv~lDl~~~~g~~~~~~Li~~A----DVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~ 338 (501)
++..+-+|+|+++-.+.+.++++.. .|+|.+|.+..+. .+++++|.+-..-+
T Consensus 91 ~~~~l~iEiK~~~~~~~~~~~l~~~~~~~~v~i~SF~~~~l~-------~~~~~~p~~~~~~l 146 (226)
T cd08568 91 NDAIINVEIKDIDAVEPVLEIVEKFNALDRVIFSSFNHDALR-------ELRKLDPDAKVGLL 146 (226)
T ss_pred CCcEEEEEECCccHHHHHHHHHHHcCCCCcEEEEECCHHHHH-------HHHHhCCCCcEEEE
Confidence 4556999999987777788888875 5899999998886 47889998754333
No 285
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=21.02 E-value=79 Score=30.70 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=16.4
Q ss_pred hHHHHHHHHcCCcEEEEecC
Q psy16437 232 PFCTMLLADLGAEVIKVEQP 251 (501)
Q Consensus 232 p~a~~~LAdlGA~VIKVE~p 251 (501)
-.++++.+++|||+||.+.|
T Consensus 149 ~~a~ria~e~GaD~vKt~tg 168 (236)
T PF01791_consen 149 ARAARIAAELGADFVKTSTG 168 (236)
T ss_dssp HHHHHHHHHTT-SEEEEE-S
T ss_pred HHHHHHHHHhCCCEEEecCC
Confidence 46899999999999999976
No 286
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=21.02 E-value=4.9e+02 Score=27.28 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=24.2
Q ss_pred CCCCcEEEEe-CCccchhHHHHHHHHcCCcEEEEecC
Q psy16437 216 PLSNVRILDL-TRIIAGPFCTMLLADLGAEVIKVEQP 251 (501)
Q Consensus 216 pL~GlrVldl-~~~~agp~a~~~LAdlGA~VIKVE~p 251 (501)
-|.|.||.=. ....+-.++ ++|.++|.+|+.+-.+
T Consensus 283 ~l~gkrv~I~~~~~~~~~~~-~~l~elG~~v~~~~~~ 318 (406)
T cd01967 283 RLKGKKVIIYTGGARSWHVI-AALRELGMEVVAAGYE 318 (406)
T ss_pred hccCCEEEEEccCcchHHHH-HHHHHcCCEEEEEEEe
Confidence 4778888643 333333454 9999999999887543
No 287
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=20.96 E-value=93 Score=33.67 Aligned_cols=36 Identities=33% Similarity=0.525 Sum_probs=31.6
Q ss_pred CCCCCcE-EEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 215 LPLSNVR-ILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 215 ~pL~Glr-Vldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
..+.|+| |+|..+..++.++-++|.++|++||.+..
T Consensus 174 ~~~~~lkVv~d~~nGaa~~~~~~ll~~lG~~vv~~~~ 210 (464)
T COG1109 174 LKLRGLKVVVDCANGAAGLVAPRLLKELGAEVVSINC 210 (464)
T ss_pred cccCCcEEEEECCCCchhHHHHHHHHHcCCEEEEecC
Confidence 4677777 56999999999999999999999999974
No 288
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=20.81 E-value=79 Score=21.61 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=15.3
Q ss_pred hhhhcCCCHHHHhhhCCCc
Q psy16437 315 KLDRLNLGYKHLSEINSQL 333 (501)
Q Consensus 315 ~l~~lGl~~~~L~~~nP~l 333 (501)
...++|++.++|.+.||++
T Consensus 12 IA~~~~~~~~~l~~~N~~~ 30 (44)
T PF01476_consen 12 IAKRYGISVDELMELNPNI 30 (44)
T ss_dssp HHHHTTS-HHHHHHHCCTT
T ss_pred HHhhhhhhHhHHHHhcCCC
Confidence 4567899999999999876
No 289
>PRK06753 hypothetical protein; Provisional
Probab=20.77 E-value=1.2e+02 Score=31.17 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=28.8
Q ss_pred cEEEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 220 lrVldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
++|+=++..+||-.++..|+..|-+|+-+|.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~ 31 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEK 31 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 4688899999999999999999999999995
No 290
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=20.73 E-value=80 Score=30.67 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=35.6
Q ss_pred CCChhhHHHHHHHHhhCCeEEEcCChhhhhhcCCCHHHH---hhhCCCcEEEEEee
Q psy16437 288 FKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHL---SEINSQLIYCSVTG 340 (501)
Q Consensus 288 l~~~~g~~~~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L---~~~nP~lI~~~~s~ 340 (501)
++.++.|+.+++|-+.+|+++..-.---.+.-.|....- ...||-.|.++-++
T Consensus 28 it~~~ar~~vh~lRa~~daIlvG~~TV~~DnP~Ltvr~~~~~~~~~P~rVIlD~~~ 83 (218)
T COG1985 28 ITGEEARADVHELRAESDAILVGSGTVLADNPSLTVRLPEGGEERNPVRVILDSRL 83 (218)
T ss_pred EeCHHHHHHHHHHHHHcCEEEECccEEEeeCCccccccCCCCccCCCEEEEECCCC
Confidence 467999999999999999999766533333333333322 34777777766554
No 291
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=20.73 E-value=2.1e+02 Score=27.57 Aligned_cols=81 Identities=14% Similarity=0.101 Sum_probs=48.7
Q ss_pred CCCCcEEEEeC--CccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhh----hcCCceEEEEeCC
Q psy16437 216 PLSNVRILDLT--RIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTC----VNRNKKSVCVDFK 289 (501)
Q Consensus 216 pL~GlrVldl~--~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~----~nrgKrsv~lDl~ 289 (501)
.|+|-+||=.+ ..| |-..++.|+..|+.||-+-... .+... ..... .+..-..+.+|+.
T Consensus 5 ~l~~k~vlItGas~gI-G~~ia~~l~~~G~~v~~~~~~~-~~~~~-------------~~~~~~~~~~~~~~~~~~~D~~ 69 (260)
T PRK08416 5 EMKGKTLVISGGTRGI-GKAIVYEFAQSGVNIAFTYNSN-VEEAN-------------KIAEDLEQKYGIKAKAYPLNIL 69 (260)
T ss_pred ccCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEcCCC-HHHHH-------------HHHHHHHHhcCCceEEEEcCCC
Confidence 46666666443 334 5677888999999998764321 11100 00111 1222356788999
Q ss_pred ChhhHHHHHHHHh----hCCeEEEcC
Q psy16437 290 TPEGQQIIKDLAK----QCDVLVENF 311 (501)
Q Consensus 290 ~~~g~~~~~~Li~----~ADVvi~n~ 311 (501)
+++..+.+.+-+. ..|+||.|-
T Consensus 70 ~~~~~~~~~~~~~~~~g~id~lv~nA 95 (260)
T PRK08416 70 EPETYKELFKKIDEDFDRVDFFISNA 95 (260)
T ss_pred CHHHHHHHHHHHHHhcCCccEEEECc
Confidence 9988766555543 479999986
No 292
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=20.72 E-value=1.8e+02 Score=23.42 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=27.9
Q ss_pred HHHHHhhCCeEEEcCChhhhhhcCCCHHHHhhhCCCcEEEEEee
Q psy16437 297 IKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTG 340 (501)
Q Consensus 297 ~~~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~~nP~lI~~~~s~ 340 (501)
..++++.|||||-..+|..+..+ .+++...+++=+++|++.
T Consensus 55 ~~~~~~~advvilav~p~~~~~v---~~~i~~~~~~~~vis~~a 95 (96)
T PF03807_consen 55 NEEAAQEADVVILAVKPQQLPEV---LSEIPHLLKGKLVISIAA 95 (96)
T ss_dssp HHHHHHHTSEEEE-S-GGGHHHH---HHHHHHHHTTSEEEEEST
T ss_pred hHHhhccCCEEEEEECHHHHHHH---HHHHhhccCCCEEEEeCC
Confidence 45678899999999999988764 233445567777777753
No 293
>PRK14031 glutamate dehydrogenase; Provisional
Probab=20.71 E-value=1.3e+02 Score=32.59 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=33.1
Q ss_pred CCCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 215 LPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 215 ~pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
..|+|.||+=-+-.-.|-+++++|.++||.||-|-.
T Consensus 224 ~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 224 TDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 479999999999988899999999999999999865
No 294
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.70 E-value=1.3e+02 Score=29.13 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=28.9
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
+=.|-+|||+++.- .|.+.+||.+...|+-||.
T Consensus 70 ~~~g~~VLEIGtGs--GY~aAvla~l~~~V~siEr 102 (209)
T COG2518 70 LKPGDRVLEIGTGS--GYQAAVLARLVGRVVSIER 102 (209)
T ss_pred CCCCCeEEEECCCc--hHHHHHHHHHhCeEEEEEE
Confidence 44589999999854 5999999999999999996
No 295
>PRK07825 short chain dehydrogenase; Provisional
Probab=20.68 E-value=2.6e+02 Score=27.13 Aligned_cols=79 Identities=22% Similarity=0.098 Sum_probs=44.8
Q ss_pred CCCcEEEEeCC--ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 217 LSNVRILDLTR--IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 217 L~GlrVldl~~--~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
|+|-+||=.+. .| |-..++.|++.|+.|+-+... .+.... ...... .-..+.+|+.+++..
T Consensus 3 ~~~~~ilVtGasggi-G~~la~~l~~~G~~v~~~~r~--~~~~~~-------------~~~~~~-~~~~~~~D~~~~~~~ 65 (273)
T PRK07825 3 LRGKVVAITGGARGI-GLATARALAALGARVAIGDLD--EALAKE-------------TAAELG-LVVGGPLDVTDPASF 65 (273)
T ss_pred CCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEECC--HHHHHH-------------HHHHhc-cceEEEccCCCHHHH
Confidence 44545554432 23 456677788999998876431 111100 011111 234578899999986
Q ss_pred HHHHHHHh----hCCeEEEcCC
Q psy16437 295 QIIKDLAK----QCDVLVENFV 312 (501)
Q Consensus 295 ~~~~~Li~----~ADVvi~n~~ 312 (501)
+.+.+-+. ..|+||.|--
T Consensus 66 ~~~~~~~~~~~~~id~li~~ag 87 (273)
T PRK07825 66 AAFLDAVEADLGPIDVLVNNAG 87 (273)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 55444443 4699998854
No 296
>PTZ00362 hypothetical protein; Provisional
Probab=20.52 E-value=42 Score=36.03 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEc
Q psy16437 389 YAHGAVMAALLHKYKTGKGQKIDC 412 (501)
Q Consensus 389 ~aa~a~laAL~~R~rtG~G~~vdv 412 (501)
+.--+|-.-||+|.. ||.|-|
T Consensus 269 ~~~~~in~~l~~ral---~eLvVv 289 (479)
T PTZ00362 269 YLENLVNHILYQRAL---DELVVV 289 (479)
T ss_pred HHHHHHHHHHHHHHh---cceEEE
Confidence 344567778888874 555544
No 297
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=20.43 E-value=1.5e+02 Score=31.86 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=31.2
Q ss_pred CCCCC---cEEEEeCCccchhHHHHHHHHc--CCcEEEEec
Q psy16437 215 LPLSN---VRILDLTRIIAGPFCTMLLADL--GAEVIKVEQ 250 (501)
Q Consensus 215 ~pL~G---lrVldl~~~~agp~a~~~LAdl--GA~VIKVE~ 250 (501)
.||+| ..|+=++..+.|-.++..|+.. |.+|+-||.
T Consensus 17 ~~L~~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~ 57 (460)
T TIGR03329 17 PPLVGDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEA 57 (460)
T ss_pred CCCCCCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 46887 4688889999999999999998 999999995
No 298
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=20.37 E-value=2.8e+02 Score=29.52 Aligned_cols=76 Identities=24% Similarity=0.193 Sum_probs=43.1
Q ss_pred HHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhh-h-cCC--ceEEEEeCCChhhHHHHHHHHh----hCC
Q psy16437 234 CTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTC-V-NRN--KKSVCVDFKTPEGQQIIKDLAK----QCD 305 (501)
Q Consensus 234 a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~-~-nrg--Krsv~lDl~~~~g~~~~~~Li~----~AD 305 (501)
+++.| ..||+|+-+.........| .|.+ .|.....|.. . ..| -..+.+|+.+++..+.+-+.+. .-|
T Consensus 59 IA~al-~~GA~Vi~v~~~~~~~~~~-~~ta---gwy~~~a~~~~a~~~G~~a~~i~~DVss~E~v~~lie~I~e~~G~ID 133 (398)
T PRK13656 59 IAAAF-GAGADTLGVFFEKPGTEKK-TGTA---GWYNSAAFDKFAKAAGLYAKSINGDAFSDEIKQKVIELIKQDLGQVD 133 (398)
T ss_pred HHHHH-HcCCeEEEEecCcchhhhc-cccc---ccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 47777 9999998885311111111 1110 1111222321 1 113 2467899999999876665554 479
Q ss_pred eEEEcCChh
Q psy16437 306 VLVENFVPG 314 (501)
Q Consensus 306 Vvi~n~~pg 314 (501)
+||+|.--+
T Consensus 134 iLVnSaA~~ 142 (398)
T PRK13656 134 LVVYSLASP 142 (398)
T ss_pred EEEECCccC
Confidence 999998754
No 299
>PRK12828 short chain dehydrogenase; Provisional
Probab=20.37 E-value=6.9e+02 Score=23.10 Aligned_cols=83 Identities=17% Similarity=0.057 Sum_probs=48.0
Q ss_pred CCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhH
Q psy16437 216 PLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQ 294 (501)
Q Consensus 216 pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~ 294 (501)
.|+|-+||=.+. ..-|-.+++.|+..|++|+-+..-. +.... ..-...+.+-..+.+|+.+++..
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~--~~~~~------------~~~~~~~~~~~~~~~D~~~~~~~ 69 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGA--APLSQ------------TLPGVPADALRIGGIDLVDPQAA 69 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCCh--HhHHH------------HHHHHhhcCceEEEeecCCHHHH
Confidence 356666666643 2336677788888999998886521 11000 00011123445677999988765
Q ss_pred HHHHH-H---HhhCCeEEEcCC
Q psy16437 295 QIIKD-L---AKQCDVLVENFV 312 (501)
Q Consensus 295 ~~~~~-L---i~~ADVvi~n~~ 312 (501)
+.+.+ . ....|+||++-.
T Consensus 70 ~~~~~~~~~~~~~~d~vi~~ag 91 (239)
T PRK12828 70 RRAVDEVNRQFGRLDALVNIAG 91 (239)
T ss_pred HHHHHHHHHHhCCcCEEEECCc
Confidence 43332 2 225799998754
No 300
>PRK10742 putative methyltransferase; Provisional
Probab=20.32 E-value=1.3e+02 Score=29.85 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=24.2
Q ss_pred EEEEeCCccchhHHHHHHHHcCCcEEEEec
Q psy16437 221 RILDLTRIIAGPFCTMLLADLGAEVIKVEQ 250 (501)
Q Consensus 221 rVldl~~~~agp~a~~~LAdlGA~VIKVE~ 250 (501)
+|||+|.... --+-.||.+|++|+-||.
T Consensus 91 ~VLD~TAGlG--~Da~~las~G~~V~~vEr 118 (250)
T PRK10742 91 DVVDATAGLG--RDAFVLASVGCRVRMLER 118 (250)
T ss_pred EEEECCCCcc--HHHHHHHHcCCEEEEEEC
Confidence 8999998773 457888999999999996
No 301
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=20.25 E-value=2.5e+02 Score=27.22 Aligned_cols=73 Identities=14% Similarity=0.194 Sum_probs=50.3
Q ss_pred EEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHHHHHHH
Q psy16437 221 RILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQIIKDL 300 (501)
Q Consensus 221 rVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~~~~~L 300 (501)
+|+=++..-.|-..++.|.+.|-+|+-|+.-. +.. .-|..-..+-+.+..|-. ..++|+++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~--~~~--------------~~~~~~~~~~~~v~gd~t---~~~~L~~a 62 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE--ERV--------------EEFLADELDTHVVIGDAT---DEDVLEEA 62 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH--HHH--------------HHHhhhhcceEEEEecCC---CHHHHHhc
Confidence 45556666678888999999999999999521 111 112333356667777755 45678888
Q ss_pred -HhhCCeEEEcCC
Q psy16437 301 -AKQCDVLVENFV 312 (501)
Q Consensus 301 -i~~ADVvi~n~~ 312 (501)
+..||+||....
T Consensus 63 gi~~aD~vva~t~ 75 (225)
T COG0569 63 GIDDADAVVAATG 75 (225)
T ss_pred CCCcCCEEEEeeC
Confidence 999999995544
No 302
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=20.22 E-value=6.4e+02 Score=26.41 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=51.9
Q ss_pred CCCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhh
Q psy16437 215 LPLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEG 293 (501)
Q Consensus 215 ~pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g 293 (501)
.+-.|.+||=.+. ..-|-...+.|.+.|.+|+-+.... +...... ..........+-.-+..|+.+++.
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~--~~~~~~~--------~~~~~~~~~~~v~~v~~Dl~d~~~ 125 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK--SGIRGKN--------GKEDTKKELPGAEVVFGDVTDADS 125 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech--hhccccc--------hhhHHhhhcCCceEEEeeCCCHHH
Confidence 4677888887764 3336677778888999998876532 1110000 000011112355678899999876
Q ss_pred HHHHHHHHh----hCCeEEEcCC
Q psy16437 294 QQIIKDLAK----QCDVLVENFV 312 (501)
Q Consensus 294 ~~~~~~Li~----~ADVvi~n~~ 312 (501)
+.++++ .+|+||++.-
T Consensus 126 ---l~~~~~~~~~~~D~Vi~~aa 145 (390)
T PLN02657 126 ---LRKVLFSEGDPVDVVVSCLA 145 (390)
T ss_pred ---HHHHHHHhCCCCcEEEECCc
Confidence 455555 5899998764
No 303
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=20.21 E-value=7.6e+02 Score=24.59 Aligned_cols=104 Identities=14% Similarity=0.126 Sum_probs=54.1
Q ss_pred EEEEeCCccchhHHHHHHHHcCCcEEEEecCC-CCCcccccCCCCCCCCCcchhhhhhcCC-ceEEEEeCCChhhHHHHH
Q psy16437 221 RILDLTRIIAGPFCTMLLADLGAEVIKVEQPV-TGDECRKWGPPFLNNTELSTYFTCVNRN-KKSVCVDFKTPEGQQIIK 298 (501)
Q Consensus 221 rVldl~~~~agp~a~~~LAdlGA~VIKVE~p~-~gD~~R~~~~~~~~~~~~~~~f~~~nrg-Krsv~lDl~~~~g~~~~~ 298 (501)
+|.=++...-|-..+..|++.|-+|+-+.... .-+..+..+.. ..+....... .-..+ . -..
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---~------~~~ 66 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADREN-------PRYLPGIKLPDNLRAT---T------DLA 66 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcc-------cccCCCCcCCCCeEEe---C------CHH
Confidence 45555665556667777889999998776421 00111111000 0000000000 00111 1 133
Q ss_pred HHHhhCCeEEEcCChhhhhhcCCCHHHHhh-hCCCcEEEEEe-ecCC
Q psy16437 299 DLAKQCDVLVENFVPGKLDRLNLGYKHLSE-INSQLIYCSVT-GFGS 343 (501)
Q Consensus 299 ~Li~~ADVvi~n~~pg~l~~lGl~~~~L~~-~nP~lI~~~~s-~fG~ 343 (501)
+.++.+|+||...++..++.. ++.+.. ++|+-++++++ |++.
T Consensus 67 ~~~~~~D~vi~~v~~~~~~~v---~~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 67 EALADADLILVAVPSQALREV---LKQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred HHHhCCCEEEEeCCHHHHHHH---HHHHHhhcCCCCEEEEEeecccC
Confidence 567899999999998655442 133443 36777778887 8874
No 304
>PF09692 Arb1: Argonaute siRNA chaperone (ARC) complex subunit Arb1; InterPro: IPR018606 Arb1 is required for histone H3 Lys9 (H3-K9) methylation, heterochromatin, assembly and siRNA generation in fission yeast [].
Probab=20.21 E-value=19 Score=38.20 Aligned_cols=16 Identities=6% Similarity=0.432 Sum_probs=7.8
Q ss_pred hhhhhhcCCCHHHHhh
Q psy16437 313 PGKLDRLNLGYKHLSE 328 (501)
Q Consensus 313 pg~l~~lGl~~~~L~~ 328 (501)
|.--+.|-+|.+.+.+
T Consensus 114 ~~~~~~w~VDF~~Va~ 129 (396)
T PF09692_consen 114 PEDPEHWDVDFEGVAK 129 (396)
T ss_pred CCCcccceecHHHHHH
Confidence 4444445555555444
No 305
>PRK12744 short chain dehydrogenase; Provisional
Probab=20.19 E-value=5.5e+02 Score=24.51 Aligned_cols=86 Identities=13% Similarity=0.122 Sum_probs=47.3
Q ss_pred CCCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhh---hhcCCceEEEEeCCCh
Q psy16437 216 PLSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFT---CVNRNKKSVCVDFKTP 291 (501)
Q Consensus 216 pL~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~---~~nrgKrsv~lDl~~~ 291 (501)
.|.|-+||=.+. .--|-..++.|++.|++|+-+-.....+.. ....... ..+..-..+.+|+.++
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~D~~~~ 73 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKA-----------DAEETVAAVKAAGAKAVAFQADLTTA 73 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchH-----------HHHHHHHHHHHhCCcEEEEecCcCCH
Confidence 366666665442 123567788889999998877432101100 0000011 1122234578999999
Q ss_pred hhHHHHH-HHH---hhCCeEEEcCC
Q psy16437 292 EGQQIIK-DLA---KQCDVLVENFV 312 (501)
Q Consensus 292 ~g~~~~~-~Li---~~ADVvi~n~~ 312 (501)
+..+.+. +.. ...|+||+|--
T Consensus 74 ~~~~~~~~~~~~~~~~id~li~~ag 98 (257)
T PRK12744 74 AAVEKLFDDAKAAFGRPDIAINTVG 98 (257)
T ss_pred HHHHHHHHHHHHhhCCCCEEEECCc
Confidence 8864433 332 25799998874
No 306
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=20.18 E-value=8.5e+02 Score=25.82 Aligned_cols=92 Identities=20% Similarity=0.117 Sum_probs=50.4
Q ss_pred CCCCcEEEEeCCccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 216 pL~GlrVldl~~~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
.|.|.||.=.+.-.-.=..+++|.++|++|+.|-... .++ .. ....-+.....+.....++..+ ..
T Consensus 296 ~l~gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~~-~~~------~~----~~~~~~~~~~~~~~~~~v~~~d---~~ 361 (428)
T cd01965 296 YLGGKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVTGT-DNP------PF----EKRMELLASLEGIPAEVVFVGD---LW 361 (428)
T ss_pred HhcCCEEEEEcChHHHHHHHHHHHHcCCcceEEEEcC-CCc------hh----HHHHHHhhhhcCCCceEEECCC---HH
Confidence 5889999755543222245888999999999987643 111 00 0001111111233333444333 34
Q ss_pred HHHHHHhh--CCeEEEcCChhhh-hhcCC
Q psy16437 296 IIKDLAKQ--CDVLVENFVPGKL-DRLNL 321 (501)
Q Consensus 296 ~~~~Li~~--ADVvi~n~~pg~l-~~lGl 321 (501)
.+.++++. .|+||-|.....+ .++|+
T Consensus 362 el~~~i~~~~pdliig~~~~~~~a~~~~i 390 (428)
T cd01965 362 DLESLAKEEPVDLLIGNSHGRYLARDLGI 390 (428)
T ss_pred HHHHHhhccCCCEEEECchhHHHHHhcCC
Confidence 45667766 8999988766544 34544
No 307
>PRK10015 oxidoreductase; Provisional
Probab=20.12 E-value=1.1e+02 Score=32.72 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=28.8
Q ss_pred cEEEEeCCccchhHHHHHHHHcCCcEEEEecC
Q psy16437 220 VRILDLTRIIAGPFCTMLLADLGAEVIKVEQP 251 (501)
Q Consensus 220 lrVldl~~~~agp~a~~~LAdlGA~VIKVE~p 251 (501)
..||=++...||-.|+..||..|.+|+-||.-
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~ 37 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERG 37 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 34888899999999999999999999999963
No 308
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=20.07 E-value=2.9e+02 Score=26.65 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=44.9
Q ss_pred CCCcEEEEeCC-ccchhHHHHHHHHcCCcEEEEecCCCCCcccccCCCCCCCCCcchhhhhhcCCceEEEEeCCChhhHH
Q psy16437 217 LSNVRILDLTR-IIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKTPEGQQ 295 (501)
Q Consensus 217 L~GlrVldl~~-~~agp~a~~~LAdlGA~VIKVE~p~~gD~~R~~~~~~~~~~~~~~~f~~~nrgKrsv~lDl~~~~g~~ 295 (501)
|+|-+||=.+. .-=|-..++.|++.|++|+-+.... +... ......+..-..+.+|+.+++..+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~-------------~l~~~~~~~~~~~~~D~~~~~~~~ 67 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA--AGLQ-------------ELEAAHGDAVVGVEGDVRSLDDHK 67 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHH-------------HHHhhcCCceEEEEeccCCHHHHH
Confidence 34444444433 1226677899999999999875321 1100 000111111245778999987764
Q ss_pred H-HHHHH---hhCCeEEEcC
Q psy16437 296 I-IKDLA---KQCDVLVENF 311 (501)
Q Consensus 296 ~-~~~Li---~~ADVvi~n~ 311 (501)
. +.++. ..-|+||.|-
T Consensus 68 ~~~~~~~~~~g~id~li~~A 87 (262)
T TIGR03325 68 EAVARCVAAFGKIDCLIPNA 87 (262)
T ss_pred HHHHHHHHHhCCCCEEEECC
Confidence 3 33333 3569999985
Done!