RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16437
(501 letters)
>4ed9_A CAIB/BAIF family protein; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; HET: NHE; 1.95A
{Brucella suis}
Length = 385
Score = 481 bits (1241), Expect = e-169
Identities = 120/285 (42%), Positives = 176/285 (61%), Gaps = 3/285 (1%)
Query: 210 SENPSLPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNN-- 267
+ PL +++++L RI+AGP+ L DLGA+VIKVE P GD+ R WGPPF++
Sbjct: 3 GSMQNTPLDGLKVVELARILAGPWVGQTLCDLGADVIKVESP-EGDDTRTWGPPFIDVEG 61
Query: 268 TELSTYFTCVNRNKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLS 327
+ YF NR K+S+ DF+T EG+++++ L + DV++ENF G LD+ L Y+ L
Sbjct: 62 ERSAAYFHACNRGKRSITADFRTEEGRELVRRLVAEADVVIENFKLGGLDKYGLDYESLK 121
Query: 328 EINSQLIYCSVTGFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATG 387
IN QLIYCS+TGFG GPY +R GYD + +GG++ +TG PD P K+G+A D+ TG
Sbjct: 122 AINPQLIYCSITGFGHTGPYAERAGYDFMIQGMGGIMDLTGEPDREPQKIGVAFADIFTG 181
Query: 388 LYAHGAVMAALLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLNAGIEGKRWGTSHANVV 447
LY+ A+ +AL+ + +TGKGQ ID L +L N NYL +G KR G +H N+
Sbjct: 182 LYSVIAIQSALIMRARTGKGQHIDMALFDCMSGVLANQAMNYLASGKSPKRMGNAHPNIA 241
Query: 448 PHQVFKTSNGYVTIGTGSDKQYQDMCKVMNLQHLALDPRYLTGAL 492
P+Q S+GY I G+D Q+ + ++ + LA D R+ T +
Sbjct: 242 PYQTLSVSDGYFIIACGNDGQFGKLSTLLGIGELAKDERFATNSA 286
Score = 143 bits (363), Expect = 2e-38
Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
+ ++ + LA D R+ T + RV NR L +E +T + ++ L + P +N
Sbjct: 266 LSTLLGIGELAKDERFATNSARVANRAALTALLEERTKQWKRDDLLAELAKIGVPAGPIN 325
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLK 120
+++ VFAD + + + + + + +S ++ + P L EH +
Sbjct: 326 TVADVFADPQFKARGMKIDPQG-----VPGLRTPIRFSDADLKLDSRSPKLNEHGAAIRA 380
Query: 121 DL 122
+L
Sbjct: 381 EL 382
>1q7e_A Hypothetical protein YFDW; structural genomics, intertwined dimer,
PSI, protein structu initiative; HET: MSE; 1.60A
{Escherichia coli} SCOP: c.123.1.1 PDB: 1pqy_A* 1q6y_A*
1pt7_A 1pt5_A 1pt8_A*
Length = 428
Score = 446 bits (1149), Expect = e-154
Identities = 90/303 (29%), Positives = 151/303 (49%), Gaps = 24/303 (7%)
Query: 212 NPSLPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELS 271
+ S PL +++LD T + +GP CT +LA GA+VIK+E+P GD R + +
Sbjct: 2 SLSTPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDID--A 59
Query: 272 TYFTCVNRNKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINS 331
YFT +N NK+S+ ++ KT EG+++++ L ++ D+LVENF PG +D + ++H+ EIN
Sbjct: 60 LYFTMLNSNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINP 119
Query: 332 QLIYCSVTGFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAH 391
+LI+ S+ GF PY + Y+ +A + GG TG DGPP A D TG++
Sbjct: 120 RLIFGSIKGFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPPLVSAAALGDSNTGMHLL 179
Query: 392 GAVMAALLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLNA-----------------GI 434
++AALLH+ KTG+GQ++ ++ +++ + G
Sbjct: 180 IGLLAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRLDKLGYLEEYPQYPNGTFGD 239
Query: 435 EGKRWGTSHANVVPHQV-----FKTSNGYVTIGTGSDKQYQDMCKVMNLQHLALDPRYLT 489
R G + P + ++T T ++ +++ CK + DP Y T
Sbjct: 240 AVPRGGNAGGGGQPGWILKCKGWETDPNAYIYFTIQEQNWENTCKAIGKPEWITDPAYST 299
Query: 490 GAL 492
Sbjct: 300 AHA 302
Score = 156 bits (397), Expect = 8e-43
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 2/140 (1%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
CK + DP Y T R + + EIE T+ E + P A V
Sbjct: 282 TCKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTIDKHEAVAYLTQFDIPCAPVL 341
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLK 120
S+ ++ D ++ V E+ G VG + +S P+++ P LGEHT VL+
Sbjct: 342 SMKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPMKFSAFTPDIK-AAPLLGEHTAAVLQ 400
Query: 121 DLLNYDETTIAKLKEKKILG 140
+ L Y + IA +K+ +
Sbjct: 401 E-LGYSDDEIAAMKQNHAIE 419
>3ubm_A COAT2, formyl-COA:oxalate COA-transferase; HET: COA; 1.99A
{Acetobacter aceti}
Length = 456
Score = 436 bits (1124), Expect = e-150
Identities = 83/319 (26%), Positives = 143/319 (44%), Gaps = 37/319 (11%)
Query: 209 SSENPSLPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNT 268
++ S PL ++++D + + P LLA GA+VIK+E+ GD R +
Sbjct: 23 TTSENSKPLDGIKVIDFGGVQSVPSAAQLLAWYGADVIKIERVGVGDITRNQLRDIPDAD 82
Query: 269 ELSTYFTCVNRNKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSE 328
+ YFT +N NK+SV ++ KTPEG+ + + K D+L+ENF PG ++R+ +++L +
Sbjct: 83 --ALYFTMLNCNKRSVELNTKTPEGKAVFEKCIKWADILLENFRPGAMERMGFTWEYLQQ 140
Query: 329 INSQLIYCSVTGFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPC------------- 375
+N +LIY +V GFG P+ Y+ +A GG TG+ +G P
Sbjct: 141 LNPRLIYGTVKGFGENSPWAGVSAYENVAQCAGGATSTTGYWNGAPLVDGQAPGNNNGPL 200
Query: 376 KVGIASIDLATGLYAHGAVMAALLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLNA--- 432
A D TG + V+AAL + +TGKGQKI ++ +++ +
Sbjct: 201 VSAAALGDSNTGNHLLIGVLAALFGRERTGKGQKISVSMQDAVLNLCRVKLRDQQRLERV 260
Query: 433 --------------GIEGKRWGTSHAN-----VVPHQVFKTSNGYVTIGTGSDKQYQDMC 473
G R G + ++ + ++T + T ++ + C
Sbjct: 261 GYLEEYPQYPNGKFGDTVPRGGNAGGGGQPGWILKCKGWETDDNAYIYCTVQEQDWGPTC 320
Query: 474 KVMNLQHLALDPRYLTGAL 492
+ + A DP+Y T
Sbjct: 321 EAIGKPEWATDPKYNTAKA 339
Score = 153 bits (389), Expect = 1e-41
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 3/140 (2%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
C+ + A DP+Y T R + + IE +KT E + P + V
Sbjct: 319 TCEAIGKPEWATDPKYNTAKARETHMFEIFAAIEKAIADKTKYEAVAHLAKYRVPCSPVL 378
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLK 120
S+ ++ +++ + E+ K G + P + +S PE++ P LG+HTD VL
Sbjct: 379 SMKEIAEAPDLRESGTIVEVQQPKRGTFLTINP-IKFSGFTPEIK-AAPLLGQHTDEVLA 436
Query: 121 DLLNYDETTIAKLKEKKILG 140
+ L Y I L++KKI
Sbjct: 437 E-LGYSAEEIKSLRDKKITC 455
>2vjq_A Formyl-coenzyme A transferase; class III COA transferase; HET: EPE;
1.8A {Oxalobacter formigenes} PDB: 2vjp_A 2vjm_A*
2vjl_A* 2vjk_A* 1p5h_A 1p5r_A* 2vjn_A* 1t4c_A* 2vjo_A*
2vjm_B* 1vgr_A* 1t3z_A* 1t4c_B* 1vgq_A*
Length = 428
Score = 429 bits (1105), Expect = e-148
Identities = 88/313 (28%), Positives = 143/313 (45%), Gaps = 36/313 (11%)
Query: 214 SLPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTY 273
+ PL + +LD T + AGP CT ++ LGA VIK+E+ +GD R N S Y
Sbjct: 2 TKPLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGQLQDKPNVD--SLY 59
Query: 274 FTCVNRNKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQL 333
FT N NK+S+ +D KTPEG+++++ + K+ DV+VENF PG LDR+ ++++ E+N ++
Sbjct: 60 FTMFNCNKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRV 119
Query: 334 IYCSVTGFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGA 393
I SV G+ + Y+ +A GG TG DGPP G A D +G++
Sbjct: 120 ILASVKGYAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGDSNSGMHLMIG 179
Query: 394 VMAALLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLNAGIEG----------------- 436
++AAL ++KTG+GQK+ + ++++ + G
Sbjct: 180 ILAALEIRHKTGRGQKVAVAMQDAVLNLVRIKLRDQQRLERTGILAEYPQAQPNFAFDRD 239
Query: 437 ------------KRWGTSHANVVPHQVFK-----TSNGYVTIGTGSDKQYQDMCKVMNLQ 479
R G + P + K T T + + +C +++
Sbjct: 240 GNPLSFDNITSVPRGGNAGGGGQPGWMLKCKGWETDADSYVYFTIAANMWPQICDMIDKP 299
Query: 480 HLALDPRYLTGAL 492
DP Y T
Sbjct: 300 EWKDDPAYNTFEG 312
Score = 155 bits (394), Expect = 2e-42
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 2/139 (1%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
+C +++ DP Y T RV+ + IE K +K E P V
Sbjct: 292 ICDMIDKPEWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVM 351
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLK 120
S+ ++ D +Q + V E+ E G+ VG +S QPE+ P LGEHTD VLK
Sbjct: 352 SMKELAHDPSLQKVGTVVEVVDEIRGNHLTVGAPFKFSGFQPEIT-RAPLLGEHTDEVLK 410
Query: 121 DLLNYDETTIAKLKEKKIL 139
+ L D+ I +L K+++
Sbjct: 411 E-LGLDDAKIKELHAKQVV 428
>1xk7_A Crotonobetainyl-COA:carnitine COA-transferase; CAIB,
montreal-kingston bacterial structural genomics
initiative, BSGI, structural genomics; 1.60A
{Escherichia coli} SCOP: c.123.1.1 PDB: 1xk6_A 1xvt_A*
1xvu_A* 1xvv_A* 1xa3_A* 1xa4_A*
Length = 408
Score = 425 bits (1094), Expect = e-146
Identities = 71/282 (25%), Positives = 116/282 (41%), Gaps = 14/282 (4%)
Query: 213 PSLPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELST 272
PL+ +R++ IAGPF + A+ GAEVI +E D R
Sbjct: 11 KFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPN---------- 60
Query: 273 YFTCVNRNKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQ 332
Y RN ++ ++ EG++ L + D+ +E R + + L + N +
Sbjct: 61 YPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPK 120
Query: 333 LIYCSVTGFGSKGP--YKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYA 390
L+ ++GFG G Y + P Y+ IA + G L G D P + D +GL A
Sbjct: 121 LVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPM-PAFPYTADYFSGLTA 179
Query: 391 HGAVMAALLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLNAG-IEGKRWGTSHANVVPH 449
A +AAL +TGKG+ ID + + M +Y N G + +
Sbjct: 180 TTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGC 239
Query: 450 QVFKTSNGYVTIGTGSDKQYQDMCKVMNLQHLALDPRYLTGA 491
++K ++GY+ + Q ++ K + L HL P G
Sbjct: 240 GLYKCADGYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGT 281
Score = 140 bits (356), Expect = 2e-37
Identities = 24/148 (16%), Positives = 54/148 (36%), Gaps = 6/148 (4%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVEN-----RELLCKEIEAKTMEKTTEEWLLIFQGVSFP 55
K + L HL P G + L+ ++++A T E F ++
Sbjct: 262 CFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLATHTIAEVKERFAELNIA 321
Query: 56 YAQVNSISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHT 115
A+V ++ ++ ++ + + + K + ++ P+ G T
Sbjct: 322 CAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDT 381
Query: 116 DYVLKDLLNYDETTIAKLKEKKILGLIE 143
+LK+ + Y E I +L K + + +
Sbjct: 382 AAILKN-IGYSENDIQELVSKGLAKVED 408
>2yim_A Probable alpha-methylacyl-COA racemase MCR (2-methylacyl-COA
racemase) (2-arylpropionyl-COA...; isomerase, methyl-COA
racemase; HET: MC4; 1.41A {Mycobacterium tuberculosis}
PDB: 2gce_A* 1x74_A* 2gd0_A* 2gd2_A* 2gd6_A* 2gci_A*
Length = 360
Score = 310 bits (796), Expect = e-102
Identities = 75/277 (27%), Positives = 132/277 (47%), Gaps = 18/277 (6%)
Query: 214 SLPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTY 273
+ PLS +R+++L I GP M+L DLGA+V+++++P + D +
Sbjct: 2 AGPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRD------------- 48
Query: 274 FTCVNRNKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQL 333
+ RN++ V D K+ +G ++ L + DVL+E + PG +RL LG + +++N +L
Sbjct: 49 --AMLRNRRIVTADLKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRL 106
Query: 334 IYCSVTGFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATG-LYAHG 392
IY +TG+G GP + G+DI S+ G+LH G D P D G ++
Sbjct: 107 IYARMTGWGQTGPRSQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLV 166
Query: 393 AVMAALLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLNAGIEGKRWGTSHANVVPH-QV 451
++AAL + +GKGQ +D ++ ++ + A R P+
Sbjct: 167 GILAALWERQSSGKGQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDT 226
Query: 452 FKTSNG-YVTIGTGSDKQYQDMCKVMNLQHLALDPRY 487
++ ++G YV +G + Y M + L L P+
Sbjct: 227 YECADGRYVAVGAIEPQFYAAMLAGLGLDAAELPPQN 263
Score = 83.4 bits (207), Expect = 1e-17
Identities = 22/123 (17%), Positives = 33/123 (26%), Gaps = 11/123 (8%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
M + L L P+ L + + W +F V
Sbjct: 248 MLAGLGLDAAELPPQN-----DRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVL 302
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLK 120
+ +V + HI + E PA +S T PPA + VL
Sbjct: 303 AFGEVHNEPHIIERNTFYEA-----NGGWQPMPAPRFSRTASSQPR-PPAATIDIEAVLT 356
Query: 121 DLL 123
D
Sbjct: 357 DWD 359
>2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A
{Mycobacterium tuberculosis}
Length = 359
Score = 302 bits (775), Expect = 3e-99
Identities = 69/275 (25%), Positives = 123/275 (44%), Gaps = 18/275 (6%)
Query: 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFT 275
PL+ V++++L I GP M+LADLGA+V++V +P S
Sbjct: 6 PLAGVKVIELGGIGPGPHAGMVLADLGADVVRVRRPGGLTM-------------PSEDRD 52
Query: 276 CVNRNKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIY 335
++R K+ V +D KT + +LA + DVL++ F PG +RL +G + +N +LI+
Sbjct: 53 LLHRGKRIVDLDVKTQPQ--AMLELAAKADVLLDCFRPGTCERLGIGPDDCASVNPRLIF 110
Query: 336 CSVTGFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATG-LYAHGAV 394
+TG+G GP G+DI S G L G+ D PP D G + +
Sbjct: 111 ARITGWGQDGPLASTAGHDINYLSQTGALAAFGYADRPPMPPLNLVADFGGGSMLVLLGI 170
Query: 395 MAALLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLNAGIEGKRWGTSHANVVPH-QVFK 453
+ AL + ++G GQ +D ++ + + + +R P + ++
Sbjct: 171 VVALYERERSGVGQVVDAAMVDGVSVLAQMMWTMKGIGSLRDQRESFLLDGGAPFYRCYE 230
Query: 454 TSNG-YVTIGTGSDKQYQDMCKVMNLQHLALDPRY 487
TS+G Y+ +G + + + + L + +
Sbjct: 231 TSDGKYMAVGAIEPQFFAALLSGLGLSAADVPTQL 265
Score = 88.0 bits (219), Expect = 4e-19
Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 10/116 (8%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
+ + L + + V + + +T +EW +F G V
Sbjct: 250 LLSGLGLSAADVPTQL-----DVAGYPQMYDIFAERFASRTRDEWTRVFAGTDACVTPVL 304
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTD 116
+ S+ ++H++ V ++ PA +S T PPPA D
Sbjct: 305 AWSEAANNDHLKARSTVITAHG-----VQQAAPAPRFSRTPAGPVRPPPAAATPID 355
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 3e-04
Identities = 39/258 (15%), Positives = 78/258 (30%), Gaps = 89/258 (34%)
Query: 276 CVNRNKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIY 335
V N ++ + F +G++I ++ + E V GKL + +K ++E ++ +
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRENYSAMI---FETIVDGKLKTEKI-FKEINEHSTSYTF 1719
Query: 336 ------CSVTGF-------GSKGPYKD------RPGYDIIA----------ASIGGLLHI 366
S T F K ++D P A AS+ ++ I
Sbjct: 1720 RSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI 1779
Query: 367 TGHPDGPPCKVGIASIDLAT--GLYAHGAV-----------MAALLHK--YKTGKGQKID 411
+ +++ G+ AV M A+ + + +
Sbjct: 1780 E------------SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQ 1827
Query: 412 --CNLLSTQVSMLINVGANYLNAGIEGKRWGTSHANVVPHQVFKTSNGYVTIGT--GSDK 467
+ + L+ + NY N V +Q YV G D
Sbjct: 1828 YVVERVGKRTGWLVEI-VNY-N---------------VENQQ------YVAAGDLRALDT 1864
Query: 468 --QYQDMCKVMNLQHLAL 483
+ K+ + + L
Sbjct: 1865 VTNVLNFIKLQKIDIIEL 1882
Score = 35.4 bits (81), Expect = 0.049
Identities = 52/340 (15%), Positives = 83/340 (24%), Gaps = 122/340 (35%)
Query: 183 DKNSINDENENKISLYENFYSLDLALSSENPSLPLSNVRILDL------TRIIAG----P 232
+ + +DE L F L S PS ++L+L + G
Sbjct: 46 EGFAADDEPTTPAELVGKF--LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 233 FCTMLLADLGAEVIKVEQPVTG--DECRKWGPPFLNNTELSTYFTCVNRNKKSVCVDFKT 290
LL + ++K ++ + PF + S F V + F
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN-SALFRAVGEGNAQLVAIF-- 160
Query: 291 PEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIYCSVTGFGSKGPYKDR 350
G Q G Y E+ + +Y + Y
Sbjct: 161 --GGQ------------------G----NTDDY--FEEL--RDLYQT---------YHVL 183
Query: 351 PGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHG-AVMAALLHKYKTGKGQK 409
G D+I S L + A ++ G ++ L
Sbjct: 184 VG-DLIKFSAETLSELIRTTLD------------AEKVFTQGLNILEWL-----ENPSNT 225
Query: 410 IDCN-LLSTQVSM-LINVGANYLNAGIEGKRWGTSHANVVPHQVFKTSNGYVTIGTGSDK 467
D + LLS +S LI V A
Sbjct: 226 PDKDYLLSIPISCPLIGV---------------IQLA----------------------- 247
Query: 468 QYQDMCKVMNLQHLALDPRY--LTG-------ALILAMTS 498
Y K++ L TG A+ +A T
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Score = 35.0 bits (80), Expect = 0.063
Identities = 42/231 (18%), Positives = 64/231 (27%), Gaps = 76/231 (32%)
Query: 204 LDLALSSENPSLPLSN-VRI-L---DLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECR 258
+ ++ N LP V I L +++GP L L + K + P D+ R
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP--PQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 259 KWGPPFLNNTELSTYFTCVNRNKKSVCV------------DFKTPEGQQIIKDLAKQCDV 306
PF +K P I KDL K
Sbjct: 407 I---PF--------------SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN--- 446
Query: 307 LVENFVPGKLDRLNLGYKHLSEINSQL---IYCSVTGFGSKGPYKD-RPGYDIIAASIGG 362
N+ + + +Y + G D R I+ I
Sbjct: 447 -------------NVSFNA-----KDIQIPVYDTFDG-------SDLRVLSGSISERIVD 481
Query: 363 LLHITGHP-DGPPCKVGIAS--IDLATGLYAHGAVMAALLHKYKTGKGQKI 410
I P A+ +D G A G + L H+ K G G ++
Sbjct: 482 C--IIRLPVKWETTTQFKATHILDFGPGG-ASG--LGVLTHRNKDGTGVRV 527
Score = 35.0 bits (80), Expect = 0.071
Identities = 75/498 (15%), Positives = 134/498 (26%), Gaps = 185/498 (37%)
Query: 46 LLIFQG---VSFPYAQVNSISQVFADEHIQD--IKLVKEISHEKYGDIKIVGPA--VAYS 98
L + G V + F +Q+ K++ E + D + PA V
Sbjct: 9 LTLSHGSLEHVLL---V-PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 99 LTQPEVRTPPPALGEHTDYVLKDLLNYDETTIAKLKEKKILGLIERLTKNADPVCTREKA 158
L P +G D VL L E L+ I L +L + D
Sbjct: 65 LGYVSSLVEPSKVG-QFDQVLNLCLTEFENCY--LEGNDIHALAAKLLQEND-------- 113
Query: 159 KKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKISLYENFYS----LDLALSSENPS 214
K K+ I +N+ + ++ S
Sbjct: 114 ------------TTLVKTKELI------------------KNYITARIMAKRPFDKKSNS 143
Query: 215 LPLSNVRILDLTRIIA--GPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELST 272
V +++A G G Q G NT+
Sbjct: 144 ALFRAVGE-GNAQLVAIFG----------G-------Q---G------------NTD--D 168
Query: 273 YFTCVNRNKKSVCVD-----FKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLS 327
YF + ++T ++ DL K + + LD + +
Sbjct: 169 YF------------EELRDLYQTYHV--LVGDLIKFSAETLSELIRTTLDAEKV-FTQGL 213
Query: 328 EINSQLIYCSVTGFGSKGPYKDRPGYDIIAAS------IG--GLLH--ITGHPDGPPCKV 377
I L + P + P D + + IG L H +T K+
Sbjct: 214 NILEWL----------ENP-SNTPDKDYLLSIPISCPLIGVIQLAHYVVT-------AKL 255
Query: 378 -GIASIDLAT---GLYAHGA--VMAALLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLN 431
G +L + G H V A + + + + S ++V +
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE-------------SFFVSV-RKAIT 301
Query: 432 A----GIEGKRWGTSHANVVPHQVFKTSNGYVTIGTG-----------SDKQYQDMCKVM 476
G+ + ++ P + + S + G + +Q QD
Sbjct: 302 VLFFIGVRCYE-AYPNTSLPPSIL-EDS---LENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 477 NLQHLALDPR-YLTGALI 493
N HL + + +L+
Sbjct: 357 N-SHLPAGKQVEI--SLV 371
Score = 34.6 bits (79), Expect = 0.092
Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 23/101 (22%)
Query: 10 LALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLL-IFQGVSFPYAQVN---SISQV 65
+A++P + + E + + + + +T WL+ I VN Q
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRT------GWLVEI----------VNYNVENQQY 1853
Query: 66 FADEHIQDI-KLVKEISHEKYGDIKIVGPAVAYSLTQPEVR 105
A ++ + + ++ K I I+ + SL+ EV
Sbjct: 1854 VAAGDLRALDTVTNVLNFIKLQKIDII--ELQKSLSLEEVE 1892
Score = 34.3 bits (78), Expect = 0.12
Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 45/149 (30%)
Query: 56 Y-AQVNSISQVFADEHIQD-IKLVK-------------EISHEKYGDIKIVGPAVAYSLT 100
Y A S++ V + I+ +++V E+ YG I I VA S +
Sbjct: 1767 YAALA-SLADVMS---IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 101 QPEVRTPPPALGEHTDYVLKDLLNY---DETTIA--KLKEKKILGLIERLTKNADPVCTR 155
Q ++ +G+ T +++ +++NY ++ +A L+ ++ +T
Sbjct: 1823 QEALQYVVERVGKRTGWLV-EIVNYNVENQQYVAAGDLRA------LDTVTNVL------ 1869
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNISVDK 184
K +K + +K++S+++
Sbjct: 1870 --------NFIKLQKIDIIELQKSLSLEE 1890
Score = 33.1 bits (75), Expect = 0.26
Identities = 26/116 (22%), Positives = 38/116 (32%), Gaps = 28/116 (24%)
Query: 391 HGAVMAALLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLNAGIEGKRWGTSHANVVPHQ 450
H A+ A LL + T + + LI NY+ A I KR +
Sbjct: 102 H-ALAAKLLQENDTTLVKTKE----------LI---KNYITARIMAKRPFDKKS---NSA 144
Query: 451 VFKTSN-GYVTI-----GTGSDKQYQDMCKVMNLQHLALDPRYLTGALILAMTSHL 500
+F+ G + G G+ Y + L+ L L G LI L
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFE-----ELRDLYQTYHVLVGDLIKFSAETL 195
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.6 bits (89), Expect = 0.002
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 129 TIAKLKEKKILGLIERLTK-----NADPVCTREKAKKKKKK-KKKKKKKKKKKKKKNISV 182
+I K +E++ +RL + REKAKK ++ +++ ++ +K K N
Sbjct: 86 SIRKWREEQR----KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
Query: 183 DKNSINDENENKI 195
DK + + I
Sbjct: 142 DKAFYQQPDADII 154
Score = 32.8 bits (74), Expect = 0.15
Identities = 9/56 (16%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 143 ERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDKNSIND----ENENK 194
+RLT +P R+ ++++K+ ++ K +++ K + + ++E
Sbjct: 78 DRLT--QEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQV 131
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.002
Identities = 57/397 (14%), Positives = 112/397 (28%), Gaps = 147/397 (37%)
Query: 15 RYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVNSISQVFADEHIQDI 74
+++ LR N + L I+ + + + + I Q ++ + +QVFA ++ +
Sbjct: 81 KFVEEVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQ-----RDRLYNDNQVFAKYNVSRL 134
Query: 75 KLVKEI-------SHEKYGDIKIVGPA-------VAYSLTQPEVRTPPP------ALGE- 113
+ ++ K + I G +V+ L
Sbjct: 135 QPYLKLRQALLELRPAKN--VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 114 -HTDYVLKDLLNYDETTIAKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKK 172
+ VL+ L L+ ++ N
Sbjct: 193 NSPETVLEMLQK----------------LLYQIDPNWTSRSDHS---------------- 220
Query: 173 KKKKKKNISVDKNSINDENENKISL--YENFYSLDLALSSENPSLPLSNV---RILDLTR 227
NI + +SI E + YEN L L L NV + +
Sbjct: 221 -----SNIKLRIHSIQAELRRLLKSKPYEN--CL----------LVLLNVQNAKAWN--- 260
Query: 228 IIAGPF---CTMLL-------AD-LGAE------VIKVEQPVTGDE----CRKW------ 260
F C +LL D L A + +T DE K+
Sbjct: 261 ----AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 261 --------GPPFL---------NNTELSTYFTCVNRNKKS----VCVDFKTP-EGQQIIK 298
P + + VN +K + ++ P E +++
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 299 DLAKQCDVLVENF-VPGKLDRLNLGYKHLSEINSQLI 334
L+ V + +P L L+L + + + + ++
Sbjct: 377 RLS----VFPPSAHIPTIL--LSLIWFDVIKSDVMVV 407
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 37.1 bits (85), Expect = 0.010
Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 119 LKDLLNYDE--TTIAKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKK 176
L L E ++ KK+ E + D K K KK K +K
Sbjct: 249 LSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALA 308
Query: 177 KKNIS 181
K + S
Sbjct: 309 KVDKS 313
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 33.6 bits (76), Expect = 0.071
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 130 IAKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKK 177
+ +LK+KK + ++ + AKK + KK K+ K KK
Sbjct: 111 VRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGKK 158
Score = 30.5 bits (68), Expect = 0.63
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
EKA ++ K+KK +KK+ +K
Sbjct: 107 AEKAVRELKQKKANDIEKKRADRK 130
Score = 28.2 bits (62), Expect = 4.0
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENK 194
+KA+ +K ++ K+KK +KK + + K
Sbjct: 102 HKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKK 141
Score = 27.1 bits (59), Expect = 9.1
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 147 KNADPVCTREKAKKKKKKKKKKKKKKKKKKKKN 179
KN D + +A+K ++ K+KK +KK+ +
Sbjct: 96 KNLDASHKKAEAEKAVRELKQKKANDIEKKRAD 128
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 34.4 bits (78), Expect = 0.072
Identities = 25/184 (13%), Positives = 61/184 (33%), Gaps = 14/184 (7%)
Query: 22 RVENRELLCKEIEA--KTMEKTTEEWLLIFQGVSFPYAQVNSISQVFADEHIQDIKLVKE 79
+EN E K ++ + + + E+ F + + ++ + +++E D ++
Sbjct: 185 IIENEEEKIKRVKMQQEALRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEE--DRFILLM 242
Query: 80 ISHEKYGDIKIVGPAVAYSLTQPE--------VRTPPPALGEHTDYVLKDLLN-YDETTI 130
+ + P RTP L + +L+ L ++ +
Sbjct: 243 LFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPV-ELARRGNTLLQCLEKEFNAGIV 301
Query: 131 AKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDE 190
K + + K + A +K+ + KK K + N+ ++
Sbjct: 302 LDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLVAEKI 361
Query: 191 NENK 194
EN+
Sbjct: 362 PENE 365
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 33.3 bits (75), Expect = 0.12
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNI 180
++K ++ ++ +K K+K+ I
Sbjct: 19 QQKTAEQVAAERAARKAANKEKRAII 44
Score = 32.1 bits (72), Expect = 0.29
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENK 194
+ A ++ +K K+K+ ++N + K E
Sbjct: 24 EQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNII 63
Score = 30.2 bits (67), Expect = 1.2
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 154 TREKAKKKKKKKKKKKKKKKKKKKK 178
T E+ ++ +K K+K+ +
Sbjct: 22 TAEQVAAERAARKAANKEKRAIILE 46
Score = 29.4 bits (65), Expect = 2.4
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNI 180
+ A++ ++ +K K+K+ +
Sbjct: 21 KTAEQVAAERAARKAANKEKRAIIL 45
Score = 28.2 bits (62), Expect = 4.9
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 154 TREKAKKKKKKKKKKKKKKKKKK 176
+ +K K+K+ ++
Sbjct: 25 QVAAERAARKAANKEKRAIILER 47
Score = 27.9 bits (61), Expect = 6.8
Identities = 4/40 (10%), Positives = 14/40 (35%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENK 194
+ +K K+K+ ++ + + + + K
Sbjct: 27 AAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAK 66
Score = 27.9 bits (61), Expect = 7.1
Identities = 4/26 (15%), Positives = 13/26 (50%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNI 180
++ ++ ++ +K K+K+ I
Sbjct: 18 AQQKTAEQVAAERAARKAANKEKRAI 43
Score = 27.5 bits (60), Expect = 9.4
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 147 KNADPVCTREKAKKKKKKKKKKKKKKKKKKK 177
K + A++ +K K+K+ ++
Sbjct: 17 KAQQKTAEQVAAERAARKAANKEKRAIILER 47
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 32.0 bits (72), Expect = 0.14
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKN 179
KA KK K +K K KKKK+
Sbjct: 8 KAAKKAGKAQKNITKTDKKKKRK 30
Score = 31.2 bits (70), Expect = 0.24
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 151 PVCTREKAKKKKKKKKKKKKKKKKKKKK 178
P + + AKK K +K K KKKK+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRK 30
Score = 30.1 bits (67), Expect = 0.65
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKN 179
K KK K +K K KKK
Sbjct: 6 SGKAAKKAGKAQKNITKTDKKKK 28
Score = 29.7 bits (66), Expect = 0.98
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKNISV 182
KA K +K K KKKK+K+K++ ++
Sbjct: 12 KAGKAQKNITKTDKKKKRKRKESYAI 37
Score = 29.3 bits (65), Expect = 1.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 154 TREKAKKKKKKKKKKKKKKKKKKKK 178
K K +K K KKKK+K+K
Sbjct: 8 KAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 29.3 bits (65), Expect = 1.3
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKN 179
KK K +K K KKKK
Sbjct: 7 GKAAKKAGKAQKNITKTDKKKKR 29
Score = 27.4 bits (60), Expect = 5.9
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 158 AKKKKKKKKKKKKKKKKKKKK 178
K K KK K +K K
Sbjct: 2 PPKTSGKAAKKAGKAQKNITK 22
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 33.3 bits (75), Expect = 0.15
Identities = 7/39 (17%), Positives = 12/39 (30%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENK 194
EK +K +K K + K + + E
Sbjct: 27 EKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELV 65
Score = 32.9 bits (74), Expect = 0.17
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNI 180
E +KK+K +K K + K I
Sbjct: 21 EEVWAAEKKQKVAAEKIKAAENTKVI 46
Score = 31.3 bits (70), Expect = 0.57
Identities = 5/40 (12%), Positives = 15/40 (37%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENK 194
++K +K K + K + ++ + + + K
Sbjct: 29 KQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLK 68
Score = 30.2 bits (67), Expect = 1.2
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 154 TREKAKKKKKKKKKKKKKKKKKKKK 178
+ K+K +K K + K
Sbjct: 24 WAAEKKQKVAAEKIKAAENTKVIYA 48
Score = 29.4 bits (65), Expect = 2.2
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNI 180
A +KK+K +K K + K
Sbjct: 22 EVWAAEKKQKVAAEKIKAAENTKVIY 47
Score = 28.3 bits (62), Expect = 4.9
Identities = 3/27 (11%), Positives = 10/27 (37%)
Query: 154 TREKAKKKKKKKKKKKKKKKKKKKKNI 180
+++ +K K + K + +
Sbjct: 27 EKKQKVAAEKIKAAENTKVIYARAEQY 53
Score = 27.9 bits (61), Expect = 7.1
Identities = 6/49 (12%), Positives = 16/49 (32%)
Query: 147 KNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKI 195
+ + +K K +K K + K + + D+ ++
Sbjct: 19 RREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQL 67
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 33.3 bits (75), Expect = 0.17
Identities = 13/54 (24%), Positives = 16/54 (29%)
Query: 131 AKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDK 184
K E+ P + K KK KK KK K + DK
Sbjct: 352 DKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADK 405
Score = 32.2 bits (72), Expect = 0.39
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 131 AKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKK 178
KL+ K +E ++ + + KK KK KK KK KK
Sbjct: 347 HKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKK 394
Score = 31.4 bits (70), Expect = 0.74
Identities = 12/49 (24%), Positives = 13/49 (26%)
Query: 131 AKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKN 179
K L R+K KK KK KK KK
Sbjct: 350 RMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAAT 398
Score = 30.6 bits (68), Expect = 1.2
Identities = 15/48 (31%), Positives = 19/48 (39%)
Query: 131 AKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKK 178
AK +EK + G R K V ++ K KK KK KK
Sbjct: 360 AKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKP 407
Score = 30.6 bits (68), Expect = 1.2
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 132 KLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKK 178
K + KK + V + A KK KK +KK ++K
Sbjct: 371 KPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEK 417
Score = 30.2 bits (67), Expect = 1.7
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 126 DETTIAKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDK 184
+E + K ++ ++ P + KK KK KK +KK + +K
Sbjct: 363 EEKGVPGKKPRR--KKGKKTVGVKKP--KKPVVGKKAAATKKPAADKKPAEKKPTTEEK 417
Score = 29.8 bits (66), Expect = 2.4
Identities = 12/48 (25%), Positives = 16/48 (33%)
Query: 131 AKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKK 178
E+K + + K +K KK KK KK KK
Sbjct: 359 EAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKK 406
Score = 29.8 bits (66), Expect = 2.5
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 131 AKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKK 178
AK + ++ L ++ K ++KK KK KK KK
Sbjct: 344 AKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVV 391
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 32.4 bits (73), Expect = 0.22
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNI 180
EK +K K +++K + K++K
Sbjct: 16 DEKLRKAKAEQRKASSAQMKQRKAEW 41
Score = 31.7 bits (71), Expect = 0.38
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENK 194
KA+++K + K++K + K E +
Sbjct: 22 AKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIV 60
Score = 30.1 bits (67), Expect = 1.6
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNI 180
+ K K +++K + K++K + I
Sbjct: 18 KLRKAKAEQRKASSAQMKQRKAEWI 42
Score = 29.7 bits (66), Expect = 1.9
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 154 TREKAKKKKKKKKKKKKKKKKKKKK 178
R+ +++K + K++K +
Sbjct: 19 LRKAKAEQRKASSAQMKQRKAEWIS 43
Score = 29.0 bits (64), Expect = 3.6
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
R++ +K K +++K + K++K
Sbjct: 15 RDEKLRKAKAEQRKASSAQMKQRK 38
Score = 28.6 bits (63), Expect = 4.1
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENK 194
E+ K + K++K + K +K + + + + K
Sbjct: 24 AEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEK 63
Score = 28.2 bits (62), Expect = 5.2
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 154 TREKAKKKKKKKKKKKKKKKKKKKK 178
+ + +K + K++K + K +
Sbjct: 22 AKAEQRKASSAQMKQRKAEWISKAQ 46
Score = 27.8 bits (61), Expect = 8.1
Identities = 4/32 (12%), Positives = 13/32 (40%)
Query: 147 KNADPVCTREKAKKKKKKKKKKKKKKKKKKKK 178
+ + + ++K + K++K + K
Sbjct: 14 ARDEKLRKAKAEQRKASSAQMKQRKAEWISKA 45
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 31.3 bits (70), Expect = 0.26
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKNIS 181
K KK K +KK KK+KK + S
Sbjct: 13 KGSKKAVTKTQKKGDKKRKKSRKES 37
Score = 30.9 bits (69), Expect = 0.41
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 149 ADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDKNSI 187
+P + KK KK K +KK KK+K + SI
Sbjct: 2 PEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKESYSI 40
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 30.5 bits (68), Expect = 0.27
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 151 PVCTREKAKKKKKKKKKKKKK 171
+E A ++ K K++K++K
Sbjct: 70 SKDCKEIANQRSKSKRQKRRK 90
Score = 27.4 bits (60), Expect = 3.5
Identities = 5/22 (22%), Positives = 15/22 (68%)
Query: 153 CTREKAKKKKKKKKKKKKKKKK 174
C+++ + ++ K K++K++K
Sbjct: 69 CSKDCKEIANQRSKSKRQKRRK 90
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 32.6 bits (74), Expect = 0.29
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 147 KNADPVCTREKAKKKKKKKKKKKKKKKKKKKK 178
K D KKKKKKKKK+ K
Sbjct: 79 KERDEDDEDGDGDGDGATGKKKKKKKKKRGPK 110
Score = 32.6 bits (74), Expect = 0.34
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKK 178
+ KKKKKKKKK+ K
Sbjct: 89 DGDGDGATGKKKKKKKKKRGPKV 111
Score = 32.2 bits (73), Expect = 0.37
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 126 DETTIAKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKK 174
+A+ E+ L ER + D + A KKKKKKKKK+ K
Sbjct: 63 SVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 31.8 bits (72), Expect = 0.58
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 147 KNADPVCTREKAKKKKKKKKKKKKKKKKKKK 177
++ D KKKKKKKKK+ K
Sbjct: 81 RDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 31.4 bits (71), Expect = 0.69
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKN 179
+ KKKKKKKKK+ K + +
Sbjct: 91 DGDGATGKKKKKKKKKRGPKVQTD 114
Score = 31.4 bits (71), Expect = 0.70
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNISV 182
++ KKKKKKKKK+ V
Sbjct: 85 DEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 30.7 bits (69), Expect = 1.3
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 143 ERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKIS 196
L + DP E A ++ KKK++KKKK K + + + E+ +
Sbjct: 12 SHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVD 65
Score = 30.3 bits (68), Expect = 1.5
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKN 179
+ KKKKKKKKK
Sbjct: 84 DDEDGDGDGDGATGKKKKKKKKKR 107
Score = 30.3 bits (68), Expect = 1.8
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNISVDKNS 186
E + KKKKKKKK +
Sbjct: 83 EDDEDGDGDGDGATGKKKKKKKKKRGPKVQT 113
Score = 29.5 bits (66), Expect = 3.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 154 TREKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENK 194
T E+A KKK++KKKK K ++ + + DE +
Sbjct: 30 TAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQ 70
Score = 29.1 bits (65), Expect = 4.2
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 143 ERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKK 178
+L ++A R++ + KKKKKKK
Sbjct: 69 RQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKK 104
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 31.6 bits (71), Expect = 0.31
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNI 180
RE A ++ K++ KK K +KK KK +
Sbjct: 108 REAALREIKERIKKTKDEKKAKKAEV 133
Score = 28.5 bits (63), Expect = 3.8
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
A ++ ++ K++ KK K +K
Sbjct: 103 VRDAAREAALREIKERIKKTKDEK 126
Score = 28.1 bits (62), Expect = 4.6
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
R+ A++ ++ K++ KK K +KK
Sbjct: 104 RDAAREAALREIKERIKKTKDEKK 127
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 32.1 bits (72), Expect = 0.34
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNI 180
+ K K+ +KK K +K ++K I
Sbjct: 47 FAELKVKRLRKKFALKTLRKARRKLI 72
Score = 31.4 bits (70), Expect = 0.52
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENK 194
++ +KK K +K ++K +K K
Sbjct: 53 KRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEI 91
Score = 29.8 bits (66), Expect = 1.8
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 154 TREKAKKKKKKKKKKKKKKKKKKKK 178
+ K +KK K +K ++K +
Sbjct: 50 LKVKRLRKKFALKTLRKARRKLIYE 74
Score = 29.5 bits (65), Expect = 2.2
Identities = 7/40 (17%), Positives = 12/40 (30%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENK 194
K K +K ++K +K K + E
Sbjct: 55 LRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMA 94
Score = 28.3 bits (62), Expect = 5.5
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNI 180
E K+ +KK K +K ++K
Sbjct: 49 ELKVKRLRKKFALKTLRKARRKLIY 73
Score = 28.3 bits (62), Expect = 6.1
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 154 TREKAKKKKKKKKKKKKKKKKKKKKNI 180
R + K K +K ++K +K K+
Sbjct: 53 KRLRKKFALKTLRKARRKLIYEKAKHY 79
Score = 27.9 bits (61), Expect = 7.3
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 131 AKLKEKKILGLIERLTK-NADPVCTREKAKKKKKKKKKKKKKKKKKKKKN 179
LK+K G K A P ++K + + K K+ +KK K
Sbjct: 16 GTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLR 65
Score = 27.5 bits (60), Expect = 9.1
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 142 IERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKN 179
+++ +N + + KK K +K ++K +K
Sbjct: 40 LKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAK 77
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 140
Score = 31.1 bits (71), Expect = 0.35
Identities = 3/26 (11%), Positives = 8/26 (30%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKNISV 182
K ++ + +K + I
Sbjct: 4 PIPKIGSRRNGRISSRKSASARKIPK 29
Score = 27.3 bits (61), Expect = 7.1
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
+ K ++ + +K +K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARK 26
Score = 27.3 bits (61), Expect = 7.3
Identities = 3/27 (11%), Positives = 10/27 (37%)
Query: 154 TREKAKKKKKKKKKKKKKKKKKKKKNI 180
+ ++ + +K +K K +
Sbjct: 5 IPKIGSRRNGRISSRKSASARKIPKGV 31
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 32.2 bits (73), Expect = 0.45
Identities = 4/37 (10%), Positives = 23/37 (62%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDEN 191
R+K ++++++ + + + K++++++ ++E+
Sbjct: 399 RKKKEEEERRARMEAQLKEQRERERKMRKAKENSEES 435
Score = 31.4 bits (71), Expect = 0.75
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 132 KLKEKKILGLIERL--TKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISV 182
K+ + L +ER K+K+ K K K +SV
Sbjct: 40 KVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKLKVKELSV 92
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 31.9 bits (72), Expect = 0.46
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 149 ADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENE 192
+PV ++ K+ KKK+ + K +KK ++ K S E
Sbjct: 249 ENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQE 292
Score = 30.8 bits (69), Expect = 0.96
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISVDKNSI 187
RE +KK KK+ KKK+ + K +++ K+ +
Sbjct: 248 RENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRV 280
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure
initiative, cell free, center for eukaryotic structural
genomics, CESG; NMR {Arabidopsis thaliana} SCOP:
g.82.1.1
Length = 86
Score = 29.6 bits (66), Expect = 0.46
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISV 182
R K +K K K + + KK +I
Sbjct: 21 RAKNLEKAKAAGKGSQLEANKKAMSIQC 48
>2y9y_B IOC3, ISWI one complex protein 3; transcription, nuclear protein
complex, chromatin remodeling nucleosome remodeling;
3.25A {Saccharomyces cerevisiae} PDB: 2y9z_B
Length = 624
Score = 32.2 bits (72), Expect = 0.49
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 8/112 (7%)
Query: 109 PALGEHTDYVLKDLLN-YDETTIAKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKK 167
P G T V + + D T K ++ + + K KK +K
Sbjct: 295 PVFGIQTQQVPRYTIEGVDNTINQFKKLCSLIQSRYEIRSKKKHFVKQLKEGKKPDLSRK 354
Query: 168 KKKKKKKKKKKNISVDKNSINDENENKISLYENFYSLDLALSSENPSLPLSN 219
+ K+ K + ++++E SLY+ + L E P PL+N
Sbjct: 355 LEILKEIKA----ELKNAVKSEKDELLFSLYDKWVPL---FEGELPDQPLAN 399
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Length = 107
Score = 29.9 bits (67), Expect = 0.53
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 157 KAKKKKKKKKKKKKKKKK---KKKKNISVDKNSINDENENKISLYENFYSLD 205
KA +K+ KK+ ++ KKK +++K +++D + + + L++ Y L
Sbjct: 11 KADQKRGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQ 62
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 31.3 bits (71), Expect = 0.65
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
RE +K ++ K K+K +K++ +K
Sbjct: 316 RETEEKMRRAKLAKEKAEKERLEK 339
Score = 30.5 bits (69), Expect = 1.2
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
+ K ++ K K+K +K++ +K+
Sbjct: 317 ETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.5 bits (69), Expect = 1.3
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKN 179
R + ++K ++ K K+K +K++ +
Sbjct: 315 RRETEEKMRRAKLAKEKAEKERLEK 339
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 29.2 bits (66), Expect = 0.67
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 158 AKKKKKKKKKKKKKKKKKKKKNISVDK 184
+ K K KK+ +++ +K K ++ +
Sbjct: 2 STKNAKPKKEAQRRPSRKAKVKATLGE 28
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 30.5 bits (68), Expect = 0.70
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
RE+ K K+KKK +K +K +K
Sbjct: 105 REEKLKANKEKKKAEKAARKAEKA 128
Score = 28.9 bits (64), Expect = 2.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
KA +++K K K+KKK +K +
Sbjct: 100 VRKANREEKLKANKEKKKAEKAAR 123
Score = 28.5 bits (63), Expect = 3.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
+ KA K+KKK +K +K +K K
Sbjct: 108 KLKANKEKKKAEKAARKAEKAKSA 131
Score = 28.2 bits (62), Expect = 3.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
R+ +++K K K+KKK +K +K
Sbjct: 101 RKANREEKLKANKEKKKAEKAARK 124
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 29.6 bits (67), Expect = 0.71
Identities = 6/50 (12%), Positives = 15/50 (30%), Gaps = 6/50 (12%)
Query: 129 TIAKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKK 178
+ G+++ + K +K++ KK K +
Sbjct: 68 RAKAILWNH--GILKEVVPEGYE----MKRVGDYYVFEKRESKKSKGGEA 111
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 31.3 bits (70), Expect = 0.77
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 154 TREKAKKKKKKKKKKKKKKKKKKKKNISVDKNS 186
+E+AKK + K K++ K +K K
Sbjct: 340 VKEQAKKAAEASKAKRQATLKANRKAAKTHKKG 372
Score = 30.6 bits (68), Expect = 1.2
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
+ ++ K +K K KK +
Sbjct: 351 SKAKRQATLKANRKAAKTHKKGSQ 374
Score = 30.6 bits (68), Expect = 1.3
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKIS 196
E +K K++ K +K K KK + N NE I+
Sbjct: 348 AEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIA 389
Score = 29.0 bits (64), Expect = 4.1
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 154 TREKAKKKKKKKKKKKKKKKKKKKKN 179
KAK++ K +K K KK
Sbjct: 349 EASKAKRQATLKANRKAAKTHKKGSQ 374
Score = 28.2 bits (62), Expect = 7.7
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 131 AKLKEK-KILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDKNSIND 189
KL KI+ + A + K +K K KK + ++ +I
Sbjct: 331 FKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAK 390
Query: 190 ENENK 194
+
Sbjct: 391 ARQED 395
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 30.9 bits (69), Expect = 0.79
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKK 178
++ K KK K ++KKKK+ K K
Sbjct: 77 KQPPKPKKPKPQEKKKKQPAKTK 99
Score = 30.9 bits (69), Expect = 0.86
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 143 ERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKK 177
R ++ K KK K ++KKKK+ K K
Sbjct: 65 PRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTK 99
Score = 30.2 bits (67), Expect = 1.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKK 178
+ K K ++KKKK+ K K K+
Sbjct: 81 KPKKPKPQEKKKKQPAKTKPGKR 103
Score = 29.8 bits (66), Expect = 2.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKK 178
KK K ++KKKK+ K K
Sbjct: 79 PPKPKKPKPQEKKKKQPAKTKPG 101
Score = 29.4 bits (65), Expect = 2.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKN 179
R + ++KK+ K+ K KK K
Sbjct: 64 RPRPPPRQKKQAPKQPPKPKKPKPQ 88
Score = 29.4 bits (65), Expect = 2.6
Identities = 8/45 (17%), Positives = 23/45 (51%)
Query: 143 ERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDKNSI 187
++ P ++ ++KKKK+ K K K+++ + ++ + +
Sbjct: 71 QKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRL 115
Score = 29.4 bits (65), Expect = 2.8
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKN 179
++KK+ K+ K KK K +
Sbjct: 65 PRPPPRQKKQAPKQPPKPKKPKPQE 89
Score = 27.9 bits (61), Expect = 8.0
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 142 IERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKN 179
+ L + + ++KK+ K+ K KK
Sbjct: 49 VSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPK 86
Score = 27.5 bits (60), Expect = 9.7
Identities = 9/56 (16%), Positives = 22/56 (39%)
Query: 143 ERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKISLY 198
++ K + +KKKK+ K K K+++ + D+ + + +
Sbjct: 73 KQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNEDGDVIGH 128
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex,
single-stranded DNA, isomerase/DNA complex; HET: DNA;
2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A*
2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Length = 659
Score = 31.4 bits (72), Expect = 0.81
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 119 LKDLLNYDETTIAKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKK 177
++ L+ I + K + + P KKK +K+ KK +
Sbjct: 592 MQPLVGTLYQLIDQAKRTPV----RQFRGIVAPGSGGSADKKKAAPRKRSAKKSPPADE 646
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 30.4 bits (68), Expect = 0.82
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
RE+A + K+ KK K+ KK
Sbjct: 105 REQAIRAAKEAKKAKQASKKTAMA 128
Score = 30.0 bits (67), Expect = 1.1
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 130 IAKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKK 178
I KE K + T A + A K+K K K + K+
Sbjct: 109 IRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157
Score = 29.3 bits (65), Expect = 1.8
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNIS 181
KA++++ + K+ KK K+ K +
Sbjct: 100 VRKAQREQAIRAAKEAKKAKQASKKTA 126
Score = 27.7 bits (61), Expect = 6.1
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 147 KNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKI 195
+N P + + ++ + K+ KK K+ KK ++ K + KI
Sbjct: 94 RNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKI 142
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 31.1 bits (71), Expect = 0.82
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 158 AKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENEN 193
K+ K KK K K K SV K + + +
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGKNGSRH 480
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 30.7 bits (69), Expect = 0.86
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 159 KKKKKKKKKKKKKKKKKKKKNISVDKNSIND 189
K+ KK K KK K + ++K IS + +S
Sbjct: 115 KRDKKNKSKKSKPAQGGEQKLISEEDDSAGS 145
Score = 29.2 bits (65), Expect = 2.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKNISVDKNS 186
K + KK K KK K + ++K D ++
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDDSA 143
Score = 27.3 bits (60), Expect = 9.8
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNI 180
+++ KK K KK K + ++K
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEE 139
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.88
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 11/40 (27%)
Query: 183 DKNSINDENENKISLYENFYSLDLALSSENPSLPLSNVRI 222
+K ++ + + + LY + D A P+L + +
Sbjct: 18 EKQALK-KLQASLKLYAD----DSA-----PALAI-KATM 46
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 30.2 bits (68), Expect = 0.90
Identities = 2/25 (8%), Positives = 4/25 (16%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKNIS 181
K +K+
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENV 27
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA
recognition, chromatin, DNA binding protein; NMR
{Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A
1lwm_A
Length = 93
Score = 28.8 bits (65), Expect = 0.96
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKNIS 181
++ KK+ +KKK K+ +S
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRALS 26
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 30.3 bits (67), Expect = 1.0
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 129 TIAKLKEKKILGLIERLTKNADPVC-TREKAKKKKKKKKKK-KKKKKKKKKKNISVDKNS 186
+I K +E++ L E + REKAKK ++ ++ ++ +K K N DK
Sbjct: 101 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 160
Query: 187 INDENENKI 195
+ + I
Sbjct: 161 YQQPDADII 169
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_X 2go5_4 2j37_4
Length = 152
Score = 29.8 bits (67), Expect = 1.1
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKK 178
KA KK K ++ K K K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVK 25
Score = 29.8 bits (67), Expect = 1.2
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 158 AKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKISLYENFY---SLDLALSSENPS 214
A K KK K ++ K K + K+ KI F+ +L A + P
Sbjct: 2 APKAAVKKADGKTQQALKVAKAV---KSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPR 58
Query: 215 LPLSNVRILDLTRIIAGPFCT 235
+ LD +I+ P T
Sbjct: 59 VSAPGRNKLDQYQILKYPLTT 79
Score = 29.5 bits (66), Expect = 1.3
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKNISVDKNSI 187
KK K ++ K K K +I I
Sbjct: 6 AVKKADGKTQQALKVAKAVKSGSIKRKSKKI 36
Score = 28.7 bits (64), Expect = 3.0
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 146 TKNADPVCTREKAKKKKKKKKKKKKKKKKKK 176
++A K K K K+K KK
Sbjct: 5 AAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 28.3 bits (63), Expect = 3.9
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKK 178
+ + K K K K+K KK
Sbjct: 13 KTQQALKVAKAVKSGSIKRKSKK 35
Score = 27.9 bits (62), Expect = 4.4
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 151 PVCTREKAKKKKKKKKKKKKKKKK----KKKKNI 180
P +KA K ++ K K K +K K I
Sbjct: 3 PKAAVKKADGKTQQALKVAKAVKSGSIKRKSKKI 36
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 30.9 bits (69), Expect = 1.1
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 111 LGEHTDYVLKDLLNY---DETTIAKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKK 167
L H K +T I KE+ + + AD ++ KK + KK
Sbjct: 455 LCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKK 514
Query: 168 KKKKKKKKKKKNISVDKNSINDENENKISLYENFY 202
K ++ +++ + V + + + + Y
Sbjct: 515 KAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 549
Score = 29.3 bits (65), Expect = 3.8
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKK 178
K K K K KK + KKKK K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPK 22
Score = 28.6 bits (63), Expect = 5.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISVDK 184
+ K K K KK + KKKK KK+ K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWK 30
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 29.2 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 147 KNADPVCTREKAKKKKKKKKKKKKKKKKKKKK 178
K+ P + + AK K+KKKK K K+K+K
Sbjct: 5 KDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 28.8 bits (64), Expect = 1.3
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISVDK 184
+ K K K+KKKK K +K
Sbjct: 7 KAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 28.8 bits (64), Expect = 1.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKNISV 182
K+KKKK K K+K+K N SV
Sbjct: 16 AKSGGGKQKKKKWSKGKQKEKVNNSV 41
Score = 26.9 bits (59), Expect = 6.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKNISVDK 184
K+KKKK K K+K+K ++ DK
Sbjct: 18 SGGGKQKKKKWSKGKQKEKVNNSVLFDK 45
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F
1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F
2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F*
2vho_F ...
Length = 135
Score = 29.6 bits (67), Expect = 1.2
Identities = 6/48 (12%), Positives = 18/48 (37%)
Query: 145 LTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENE 192
+ T K K ++++++ + + + +S +E E
Sbjct: 88 MVMRTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEEEEEE 135
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 30.4 bits (68), Expect = 1.2
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 17/97 (17%)
Query: 111 LGEHTDYVLKDLLNYDETTIAKL---KEKKILGL----IERLTKNA------DPVCTREK 157
G+H D +K L K K + +E+L +P +
Sbjct: 205 FGKHIDAYMKHLKGQSNEAFQKQFSKWSKTLEAAKVDSVEKLFTKVHAEIRKNPERVKST 264
Query: 158 AKKKKKKKKKKKKKKKK----KKKKNISVDKNSINDE 190
K K K+ KK K ++K + +
Sbjct: 265 KKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQLALSQ 301
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 28.8 bits (64), Expect = 1.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKN 179
++ K+K+ KK K+K+ KKKK+ N
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLN 103
Score = 28.4 bits (63), Expect = 1.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKK 178
K K+ KK K+K+ KKKK+ +
Sbjct: 82 RKRKESPKKNKEKRMKKKKRLNR 104
Score = 28.4 bits (63), Expect = 2.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 154 TREKAKKKKKKKKKKKKKKKKKKKK 178
E+ +K+ KK K+K+ KKKK+
Sbjct: 79 VDERKRKESPKKNKEKRMKKKKRLN 103
Score = 27.3 bits (60), Expect = 4.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKK 177
R++ + KK K+K+ KKKK+ +
Sbjct: 82 RKRKESPKKNKEKRMKKKKRLNR 104
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 30.1 bits (67), Expect = 1.4
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 112 GEHTDYVLKDLLNYDETTIAKLKEKKI-LGL----IERLTKNA------DPVCTREKAKK 160
G H +++L + DE ++L + + + +E + +A DP + +K
Sbjct: 201 GGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIYTSAHEAIRADP--AFKPTEK 258
Query: 161 KKKKKKKKKKKKKKKKKK 178
K K++ + KK ++ K
Sbjct: 259 KFTKEQYAAESKKYRQTK 276
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 30.4 bits (69), Expect = 1.5
Identities = 8/81 (9%), Positives = 25/81 (30%), Gaps = 1/81 (1%)
Query: 126 DETTIAKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDKN 185
+ I + + + + + K+K + + ++ +
Sbjct: 549 TDDQIIYFILNYMAKGNPEGARILLDKYYKREDVIRVAKEKFGDEAEVVLRRVYKDIKLK 608
Query: 186 SINDENENKISLYENFYSLDL 206
+ E + +++F LDL
Sbjct: 609 EKKEGKEMYVK-FDDFAKLDL 628
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics,
protein initiative; 2.04A {Lactobacillus salivarius}
Length = 177
Score = 29.6 bits (67), Expect = 1.6
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 132 KLKEKKI-LGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKN 179
L +K I + E EK +K + + K+N
Sbjct: 92 NLSKKGIDDNIAEDALILYTDKLQVEKGVTLAEKLANRYSHDSYRNKQN 140
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone
H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain,
histone deacetylase; HET: M2L; NMR {Saccharomyces
cerevisiae}
Length = 136
Score = 29.3 bits (64), Expect = 1.6
Identities = 2/23 (8%), Positives = 5/23 (21%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKK 177
+A K + +
Sbjct: 114 ANEAGSTGSAPATGGVXKPHRYR 136
Score = 27.0 bits (58), Expect = 8.9
Identities = 1/23 (4%), Positives = 3/23 (13%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKK 178
K + +
Sbjct: 114 ANEAGSTGSAPATGGVXKPHRYR 136
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 30.0 bits (67), Expect = 1.7
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
R K KK+ K+ KK
Sbjct: 248 RADPTMAKSTKKEPATHKRYNLKK 271
Score = 30.0 bits (67), Expect = 1.9
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 149 ADPVCTREKAKKKKKKKKKKKKKK-KKKKKKNISVDKNSINDENE 192
ADP + K+ K+ KK +++K ++ N++N
Sbjct: 249 ADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAG 293
>2lhj_A High mobility group protein homolog NHP1; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; NMR {Babesia bovis}
Length = 97
Score = 28.1 bits (63), Expect = 1.8
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKNIS 181
+ + ++ +K KK K+ +S
Sbjct: 4 ASDRTGVRRPRKAKKDPNAPKRALS 28
Score = 26.2 bits (58), Expect = 8.9
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 161 KKKKKKKKKKKKKKKKKKN 179
+ ++ +K KK N
Sbjct: 3 GASDRTGVRRPRKAKKDPN 21
>2xu0_A Erythrocyte membrane protein 1; adhesion, virulence,
duffy-binding-like-DO; 2.06A {Plasmodium falciparum palo
alto}
Length = 487
Score = 30.1 bits (68), Expect = 1.9
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 163 KKKKKKKKKKKKKKKKNISVDKNSINDENENKISLYENF 201
KK ++ K+ K I K + N+ + + YEN
Sbjct: 385 VKKLEEFYKQNLKYSMEIQKWKKTKNNYYDKE--FYENL 421
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 29.0 bits (64), Expect = 1.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 150 DPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDK 184
P ++K K+ K + KK KKK K + DK
Sbjct: 4 QPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 28.6 bits (63), Expect = 2.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNISV 182
KA + KK KKK K K K K N +V
Sbjct: 17 AKAAQAKKGGKKKWTKGKAKDKVNHAV 43
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Length = 108
Score = 28.4 bits (63), Expect = 2.1
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKNISV 182
A KK KKK KK K + +V
Sbjct: 15 AALAGGKKSKKKWSKKSMKDRAQHAV 40
Score = 27.7 bits (61), Expect = 3.2
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKK 178
KA KK KKK KK K
Sbjct: 12 KAAAALAGGKKSKKKWSKKSMK 33
Score = 27.7 bits (61), Expect = 3.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKNISVDK 184
A KK KKK KK K + + + +D+
Sbjct: 17 LAGGKKSKKKWSKKSMKDRAQHAVILDQ 44
Score = 27.7 bits (61), Expect = 3.3
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISVDK 184
+ K KK KKK K D+
Sbjct: 6 QLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 27.7 bits (61), Expect = 3.7
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKK 177
+++ K K KK KKK
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKK 26
Score = 27.7 bits (61), Expect = 4.1
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKK 178
+ K K KK KKK
Sbjct: 5 QQLSKAAKAAAALAGGKKSKKK 26
Score = 27.3 bits (60), Expect = 5.0
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 147 KNADPVCTREKAKKKKKKKKKKKKKKKKKKKK 178
K + A KK KKK KK K +
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Length = 135
Score = 28.8 bits (64), Expect = 2.1
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 125 YDETTIAKLKEKK-IL---GLIERLTKNADPVCTREKAKKKKKKKKK----KKKKKKKKK 176
Y+ AK E L GL E++ K +R++ K+KK + KK K+ KK
Sbjct: 76 YNSVAEAKKFEPTYRLVRYGLAEKVEKA-----SRQQRKQKKNRDKKIFGTGKRLAKKVA 130
Query: 177 KKN 179
++N
Sbjct: 131 RRN 133
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 29.1 bits (64), Expect = 2.2
Identities = 7/49 (14%), Positives = 21/49 (42%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKISLYENFYSL 204
E + +K+K ++ K+ ++++ + D K ++ + L
Sbjct: 134 ENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDL 182
Score = 28.3 bits (62), Expect = 4.0
Identities = 5/37 (13%), Positives = 20/37 (54%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDEN 191
+ + K+ ++++ + + + K+++ K +D+N
Sbjct: 143 KTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDN 179
Score = 27.9 bits (61), Expect = 5.2
Identities = 4/36 (11%), Positives = 15/36 (41%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDE 190
R+ + K+ ++++ + + + K D+
Sbjct: 142 RKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADD 177
>2j8m_A Acetyltransferase PA4866 from P. aeruginosa; GCN5 family,
phosphinothricin, methionine sulfone, methionine
sulfoximine; 1.44A {Pseudomonas aeruginosa} PDB: 2bl1_A
2j8n_A 2j8r_A* 1yvo_A
Length = 172
Score = 29.1 bits (66), Expect = 2.5
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 338 VTGFGSKGPYKDRPGYD 354
V G+ S G ++ G+
Sbjct: 65 VLGYASYGDWRPFEGFR 81
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 29.5 bits (66), Expect = 2.5
Identities = 4/37 (10%), Positives = 9/37 (24%)
Query: 146 TKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISV 182
+ + K K+ +K I +
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVIII 39
Score = 28.8 bits (64), Expect = 4.7
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISV 182
R+ + + K K+ +K I +
Sbjct: 13 RDISSRSNGKNPFKRSTGRKVSNVIIII 40
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 29.9 bits (67), Expect = 2.5
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 163 KKKKKKKKKKKKKKKKNISVDKNSINDENENKISLYENF 201
KK ++ K+ K I K + N+ + + YEN
Sbjct: 388 VKKLEEFYKQNLKYSMEIQKWKKTKNNYYDKE--FYENL 424
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 29.5 bits (66), Expect = 2.5
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 11/56 (19%)
Query: 135 EKKILGLIERLTKNAD-----------PVCTREKAKKKKKKKKKKKKKKKKKKKKN 179
E++I ++RL+K+ V + K+K+ + K KKK K
Sbjct: 317 EERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAA 372
Score = 28.7 bits (64), Expect = 4.1
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
+ K KKK K K K+ K
Sbjct: 356 EPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 28.7 bits (64), Expect = 5.3
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 130 IAKLKEKKILGLIE---RLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKK 178
++K ++ G ++ ++T + +E K KKK K K K+
Sbjct: 327 LSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRG 378
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA
splicing, adenine, mRNA processing, nucleus,
phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo
sapiens} PDB: 2f9d_A 2f9j_A 2fho_B
Length = 115
Score = 28.1 bits (63), Expect = 2.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 154 TREKAKKKKKKKKKKKKKKKKKKKKNISVDK 184
+A +K KKK+++ K K+K I+ D
Sbjct: 83 NANRAFQKMDTKKKEEQLKLLKEKYGINTDP 113
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 29.4 bits (65), Expect = 2.7
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 133 LKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDK 184
LK + + A + T +A + K +K+K K+ K + + K
Sbjct: 324 LKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVK 375
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 29.5 bits (66), Expect = 2.7
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 126 DETTIAKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNIS 181
E L EK +L +E+ + + K+K+ +K + +
Sbjct: 30 AEKFADDLYEKGVLADLEKAFAAREI----KSLASKRKEDLQKITFLSRDISQQFG 81
Score = 28.3 bits (63), Expect = 6.8
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNISVDKNSIN 188
EKA ++ K K+K+ +K S
Sbjct: 47 EKAFAAREIKSLASKRKEDLQKITFLSRDISQQ 79
>3dr6_A YNCA; acetyltransferase, csgid target, essential gene, IDP00086,
structural genomics, center for STRU genomics of
infectious diseases; HET: MSE; 1.75A {Salmonella
typhimurium} PDB: 3dr8_A*
Length = 174
Score = 28.7 bits (65), Expect = 2.8
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 338 VTGFGSKGPYKDRPGYD 354
VTG+ S G ++ G+
Sbjct: 65 VTGYASFGDWRSFDGFR 81
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L*
1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 28.5 bits (63), Expect = 2.9
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISVDKNS 186
R + + + KK+ K+ +S
Sbjct: 16 RVHRRNNRWAENNYKKRLLGTAFKSSPFGGSS 47
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 29.7 bits (67), Expect = 3.0
Identities = 10/78 (12%), Positives = 26/78 (33%)
Query: 135 EKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENK 194
E KI+ L ++ + + + + + +K + + + + + +
Sbjct: 927 ENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRV 986
Query: 195 ISLYENFYSLDLALSSEN 212
+SL E L L
Sbjct: 987 LSLQEEIAKLRKELHQTQ 1004
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K,
structural genomi protein structure initiative; 2.35A
{Lactobacillus reuteri}
Length = 221
Score = 28.9 bits (65), Expect = 3.1
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 131 AKLKEKKI-LGLIERLTKNADPVCTREKAKK--KKKKKKKKKKKKKKKKKK 178
L++K I I+ P E AKK K ++ + + ++++++K
Sbjct: 134 QHLRQKGIGESDIDDALTQFTPEVQAELAKKLALKLFRRYRNQPERRREQK 184
>1yr0_A AGR_C_1654P, phosphinothricin acetyltransferase; structural
genomics, protein structure initiative, NYSGXRC, PSI;
2.00A {Agrobacterium tumefaciens str} SCOP: d.108.1.1
Length = 175
Score = 28.7 bits (65), Expect = 3.2
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 338 VTGFGSKGPYKDRPGYD 354
V G+ S G ++ GY
Sbjct: 66 VAGYASYGDWRAFDGYR 82
>1vhs_A Similar to phosphinothricin acetyltransferase; structural genomics,
unknown function; 1.80A {Bacillus subtilis} SCOP:
d.108.1.1
Length = 175
Score = 28.7 bits (65), Expect = 3.2
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 338 VTGFGSKGPYKDRPGYD 354
V + S + RP Y+
Sbjct: 64 VAAWISFETFYGRPAYN 80
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 29.4 bits (65), Expect = 3.4
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 1/81 (1%)
Query: 105 RTPPPALGEHTDYVLKDLLNYDETTIAKLKE-KKILGLIERLTKNADPVCTREKAKKKKK 163
+ P P +L L+ E + +L +T + ++ K
Sbjct: 481 KIPNPRFQRLFQCLLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLI 540
Query: 164 KKKKKKKKKKKKKKKNISVDK 184
+ KKK + ++ ++ D
Sbjct: 541 EAKKKDQVTAQEIFQDNHEDG 561
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 29.4 bits (66), Expect = 3.4
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISVDK 184
++ K+ ++K + KK+ K D+
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDE 657
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural
genomics, structural GEN consortium, SGC, rRNA,
ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Length = 245
Score = 28.7 bits (65), Expect = 3.8
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 282 KSVCVDFKTPEGQQIIKDLAKQCDVLV 308
+ + ++ +K+ D+LV
Sbjct: 128 RIHMIHKAAVAAKKFGPKSSKKFDILV 154
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 28.9 bits (65), Expect = 3.9
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENEN 193
K +++ KK+KK+ + KK + ++ + +N
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQN 508
Score = 28.5 bits (64), Expect = 6.6
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 140 GLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNIS--VDKNSINDENEN 193
++ L P ++ KK+KK+ + KKK + + + + D E+
Sbjct: 462 PGLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDALEH 517
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 28.3 bits (64), Expect = 4.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
R+K +K+ K+ +KK+K K +
Sbjct: 156 RKKFEKELKELQKKQKHKLEHHHH 179
>4ayb_Q DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_J
4b1o_Q 4b1p_J 2y0s_J 2waq_Q
Length = 104
Score = 27.6 bits (60), Expect = 4.0
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 109 PALG-EHTDYVLKDLLNYDETTIAKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKK 167
P L + + ++K+ +D K+ + L E K+ + +R KAKK KK K
Sbjct: 34 PKLSIQDIELLMKNTEIWDNLLNGKISVDEAKRLFEDNYKDYEKRDSRRKAKKAASKKVK 93
Query: 168 KKKKKKK 174
K KKK+K
Sbjct: 94 KTKKKEK 100
>2jlm_A Putative phosphinothricin N-acetyltransferase; methionine
sulfoximine; 2.35A {Acinetobacter baylyi}
Length = 182
Score = 28.3 bits (64), Expect = 4.1
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 338 VTGFGSKGPYKDRPGYD 354
+ GF S G ++ P Y
Sbjct: 73 LLGFASWGSFRAFPAYK 89
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 28.4 bits (63), Expect = 4.5
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNIS 181
KA +KK + +++ + +K I+
Sbjct: 158 AKAAEKKVVRLTSRQRGRIAAQKRIA 183
Score = 27.6 bits (61), Expect = 7.0
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
+E+A K +KK + +++ +
Sbjct: 153 KEEAVAKAAEKKVVRLTSRQRGRI 176
>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein
interaction, lyase/metal binding protein complex; 3.20A
{Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A
1y0v_A 1xfu_A
Length = 777
Score = 28.8 bits (63), Expect = 4.7
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 147 KNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNI--SVDKNSINDENENKI 195
+A + K+ K +K K +K+K K+ ++ K +E +KI
Sbjct: 6 HHAAAMNEHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKI 56
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A
{Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Length = 102
Score = 27.0 bits (59), Expect = 4.9
Identities = 3/26 (11%), Positives = 13/26 (50%)
Query: 153 CTREKAKKKKKKKKKKKKKKKKKKKK 178
+K+++ +K +++ + K +
Sbjct: 77 YVDTNLQKQRELQKANQEQYAEGKMR 102
Score = 27.0 bits (59), Expect = 5.9
Identities = 3/27 (11%), Positives = 12/27 (44%)
Query: 151 PVCTREKAKKKKKKKKKKKKKKKKKKK 177
K+++ +K +++ + K +
Sbjct: 76 KYVDTNLQKQRELQKANQEQYAEGKMR 102
>3hkz_Y DNA-directed RNA polymerase subunit 13; archaea, metal-binding,
nucleotidyltransferase, transcription, transferase,
zinc, zinc-finger; 3.40A {Sulfolobus solfataricus}
Length = 104
Score = 27.2 bits (59), Expect = 4.9
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 109 PALG-EHTDYVLKDLLNYDETTIAKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKK 167
P L + + ++++ +D K+ ++ L E K + +R KAKK KK K
Sbjct: 34 PKLSIQDIELLMRNTEIWDNLLNGKITLEEAKKLFEDNYKEYEKRDSRRKAKKAVSKKVK 93
Query: 168 KKKKKKK 174
K KKK+K
Sbjct: 94 KTKKKEK 100
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase;
4.00A {Methanosarcina mazei}
Length = 621
Score = 28.6 bits (63), Expect = 5.6
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 96 AYSLTQPEVRTP--PPALGEHTDYVLKDLLNYDETTIAKLKEKKILGLIERLTKNADPVC 153
Y L QP P P L H + + + IA + I+ A
Sbjct: 402 QYGLNQPGGGIPVGPVILLIHVASINVPFTSESKDAIADIPV------IKEEIDLAIKEV 455
Query: 154 TREKAKKKKKKKKKKKKKKKKK 175
R+ K+ KK+++K+
Sbjct: 456 ARKLKHYLSKQSNLKKRREKEI 477
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 27.9 bits (63), Expect = 5.7
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNIS 181
RE + + + + +K+ + K +S
Sbjct: 164 REAFLEANRAELVRFQKEARALLKELS 190
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease,
endopept mycobacterium tuberculosis, ATP-dependent
protease; 2.6A {Mycobacterium tuberculosis} SCOP:
c.14.1.1 PDB: 2c8t_A 2ce3_A
Length = 208
Score = 27.9 bits (63), Expect = 6.1
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 420 SMLINVGANYLNAGIEGKRWGTSHANVVPHQ 450
SM G L AG +GKR+ HA ++ HQ
Sbjct: 98 SM----GEFLLAAGTKGKRYALPHARILMHQ 124
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Length = 123
Score = 27.3 bits (60), Expect = 6.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKK 178
K K+K K K KKKK+ +K
Sbjct: 100 VKIVKRKMISKPKTDKKKKRSQK 122
Score = 27.3 bits (60), Expect = 6.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 159 KKKKKKKKKKKKKKKKKKKK 178
K+K K K KKKK+ +KK
Sbjct: 104 KRKMISKPKTDKKKKRSQKK 123
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning,
protein-DNA complex, heilx-turn- helix motif,
transcription factor; HET: BRU; 2.20A {Escherichia coli}
SCOP: a.4.14.1
Length = 178
Score = 27.5 bits (61), Expect = 6.8
Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 130 IAKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDKNSIND 189
+ +K+ + L + + TR K ++ +K + N D +
Sbjct: 100 LVTAFKKRPEEVEAWLDDDTQEI-TRGTVKLLREFLDEKGRDPNTVDAFNGQTDAERDAE 158
Query: 190 ENENK 194
+ +
Sbjct: 159 AGDGQ 163
>3bbn_R Ribosomal protein S18; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 103
Score = 26.6 bits (59), Expect = 6.9
Identities = 6/31 (19%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNISVD-KN 185
+K+K+ K K+ +++ + +D +N
Sbjct: 2 DKSKRPFIKSKRSFRRRLPPIQSGDRIDYRN 32
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group,
transcription, LSP1, mitochon transcription-DNA complex;
HET: DNA; 2.50A {Homo sapiens}
Length = 238
Score = 27.9 bits (61), Expect = 6.9
Identities = 3/28 (10%), Positives = 7/28 (25%)
Query: 154 TREKAKKKKKKKKKKKKKKKKKKKKNIS 181
++ + KK +S
Sbjct: 20 HMASMTGGQQMGRGSSSVLASCPKKPVS 47
Score = 27.5 bits (60), Expect = 8.9
Identities = 2/28 (7%), Positives = 7/28 (25%)
Query: 151 PVCTREKAKKKKKKKKKKKKKKKKKKKK 178
P + + ++ + K
Sbjct: 16 PRGSHMASMTGGQQMGRGSSSVLASCPK 43
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn
finger, ADP-ribosylation, D damage, DNA repair,
DNA-binding, glycosyltransferase; 1.70A {Homo sapiens}
PDB: 2jvn_A
Length = 160
Score = 27.3 bits (60), Expect = 7.2
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKISLYENFYSLDLALSSENPSL 215
++ KKK KK+K K K +K K + +I DE + S + L L +
Sbjct: 3 DEVAKKKSKKEKDKDSKLEKALKAQNDLIWNIKDELKKVCSTND----LKELLIFNKQQV 58
Query: 216 PLSNVRILD 224
P ILD
Sbjct: 59 PSGESAILD 67
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP:
d.201.1.1 PDB: 1kvv_A
Length = 104
Score = 26.7 bits (59), Expect = 7.6
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKK 177
K + +++K+++KK KKKKKK
Sbjct: 83 RKIAEIREQKREQKKDKKKKKK 104
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar
methabolism, structural genomics, PSI, protein structure
initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10
c.55.1.10
Length = 289
Score = 27.9 bits (63), Expect = 7.7
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 13/40 (32%)
Query: 356 IAASIGGLLHITGHPDGPPC---KVG----IASIDLATGL 388
+A IG H P GP C + G IAS G+
Sbjct: 150 LAGHIG---HTLADPHGPVCGCGRTGCVEAIAS---GRGI 183
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 28.1 bits (62), Expect = 7.7
Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 88 IKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLKDL--LNYDETTIAKLKEKKILGLIERL 145
I G + + EV T + E DY ++ N+ E+ L +++ I RL
Sbjct: 43 IFYDGREFKMTPEEEEVATMFAVMKE-HDYYRMEVFRRNFFESWREILDKRQHP--IRRL 99
Query: 146 TK-NADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDK 184
+ +P+ +++KK + K++KK K+K++ +
Sbjct: 100 ELCDFEPIYQWHLVQREKKLSRTKEEKKAIKEKQDAEAEP 139
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 28.0 bits (63), Expect = 7.7
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 42 TEEWLLI----FQGVSFPY---AQVNSISQVFADEHIQDIKLVKEISHEKYGDI 88
+ EW+L + P + + +V + H+Q+I++ + DI
Sbjct: 50 SPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTRKDI 103
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.65A {Cytophaga hutchinsonii}
Length = 321
Score = 27.9 bits (63), Expect = 7.8
Identities = 7/62 (11%), Positives = 13/62 (20%), Gaps = 10/62 (16%)
Query: 352 GYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGL--YAHGAVMAALLHKYKTGKGQK 409
G +G H+ L Y H + + K +
Sbjct: 169 GGRGNGTEVG---HMLTTRGKSLENQV-----GINHLIAYTHEQLALDVAKKSSLHTIAE 220
Query: 410 ID 411
+
Sbjct: 221 LS 222
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Length = 106
Score = 26.5 bits (58), Expect = 7.9
Identities = 12/51 (23%), Positives = 30/51 (58%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKISLYENFYSLD 205
E+ K++ +++KKKK +++K +++D + + E L++ Y+L+
Sbjct: 12 TERKSGKRQTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLE 62
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 27.9 bits (62), Expect = 8.2
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 161 KKKKKKKKKKKKKKKKKKNISVDKNSINDENENKISLYENF 201
+ + +K K+K K N + K +N Y+ +
Sbjct: 194 SELPTEVQKLKEKCDGKINYTDKKVCKVPPCQNACKSYDQW 234
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_G
Length = 113
Score = 26.9 bits (59), Expect = 8.3
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 158 AKKKKKKKKKKKKKKKKKKKKNISVDKNSI 187
K+ + K K+ K + N +
Sbjct: 4 TKEAAAVAEGKSKQDASPKPYAVKYGLNHV 33
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable
chaperon unknown function; 3.10A {Leptospira interrogans
serovar copenhaorganism_taxid}
Length = 325
Score = 28.0 bits (62), Expect = 8.5
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKISLYENFYSLD 205
+ + K++ + K+ + + I + + EN KI L E + LD
Sbjct: 277 QNILYRDKEEDTFHRWLKESRAEIPIQIFDEAYRKEN--KIPLKEETFHLD 325
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition
particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A
{Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Length = 433
Score = 27.9 bits (63), Expect = 8.6
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 138 ILGLIERLTKNADPVCTREKAKKKKKKKKKKKKK 171
I ++E++ + +K +KK + + K K
Sbjct: 298 IESILEKVKGLEE----YDKIQKKMEDVMEGKGK 327
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 138
Score = 26.9 bits (59), Expect = 8.8
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 152 VCTREKAKKKKKKKKKKKKKKKKKKKK 178
R K +K +K+ K++K + KK
Sbjct: 96 RLIRNGLATKVEKSRKQMKERKNRAKK 122
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_P
Length = 149
Score = 26.9 bits (59), Expect = 9.0
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 125 YDETTIAKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKK-----KKKKKKKKKKKN 179
YD E + ++ + TR K+ K+K K+ K +KK
Sbjct: 74 YDNQQYLLKYEPNYR--LRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDT 131
Query: 180 ISVDKNSINDENENKIS 196
+ ++ +D +N ++
Sbjct: 132 WASVQSKKSDHLKNFVA 148
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 27.2 bits (60), Expect = 9.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKK 178
K +++ +KKK +KK KK+K
Sbjct: 158 PKPEEEVAQKKKISQKKLKKQKL 180
>3g9q_A Ferrichrome-binding protein; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.60A
{Bacillus subtilis subsp} PDB: 3hxp_A
Length = 279
Score = 27.7 bits (62), Expect = 9.1
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 142 IERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKISLY 198
IE+L + A T +KA+K K KK K K KK + SI N I ++
Sbjct: 105 IEQLKEFAKMTGTEDKAEKWLAKWDKKVAAAKTKIKKAVGDKTISIMQTNGKDIYVF 161
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding,
rRNA-binding, metal-binding, zinc-finger, translation;
HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1
PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L*
1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O*
1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Length = 135
Score = 26.9 bits (59), Expect = 9.3
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 113 EHTDYVLKDLLNYDETTIAKLKEKKILGL------IERLTKNADPVCTREKAKKKKKKKK 166
E T Y+ + N E ++ ++ ++ L I R +A V R+K++ K KK
Sbjct: 65 EVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKK 124
Query: 167 KKKKKKKKKKK 177
K+ K KK
Sbjct: 125 PKEAAKTAAKK 135
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A
{Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Length = 321
Score = 27.5 bits (62), Expect = 9.4
Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 14/71 (19%)
Query: 352 GYDIIAASIGGLLHITGHPDGPPC---KVG----IAS----IDLATGLYAHGAVMAALLH 400
G +AA G HI PDG C G AS + A AA+L
Sbjct: 147 GRFGVAAEFG---HIRVVPDGLLCGCGSQGCWEQYASGRALVRYAKQRANATPENAAVLL 203
Query: 401 KYKTGKGQKID 411
G I+
Sbjct: 204 GLGDGSVDGIE 214
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 27.2 bits (60), Expect = 9.9
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKK 177
+EK + K++K+++K +K K+
Sbjct: 147 KEKYPRPPKRRKEERKGRKPWKE 169
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.395
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,622,385
Number of extensions: 474706
Number of successful extensions: 4500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3507
Number of HSP's successfully gapped: 378
Length of query: 501
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 403
Effective length of database: 3,965,535
Effective search space: 1598110605
Effective search space used: 1598110605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.3 bits)