RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16437
(501 letters)
>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 359
Score = 247 bits (632), Expect = 2e-78
Identities = 70/274 (25%), Positives = 123/274 (44%), Gaps = 17/274 (6%)
Query: 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFT 275
PLS +R+++L I GP M+L DLGA+V+++++P + D
Sbjct: 3 PLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVD---------------GISRD 47
Query: 276 CVNRNKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIY 335
+ RN++ V D K+ +G ++ L + DVL+E + PG +RL LG + +++N +LIY
Sbjct: 48 AMLRNRRIVTADLKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIY 107
Query: 336 CSVTGFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATG-LYAHGAV 394
+TG+G GP + G+DI S+ G+LH G D P D G ++ +
Sbjct: 108 ARMTGWGQTGPRSQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGI 167
Query: 395 MAALLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLNAGIEGKRWGTSHANVVP-HQVFK 453
+AAL + +GKGQ +D ++ ++ + A R P + ++
Sbjct: 168 LAALWERQSSGKGQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYE 227
Query: 454 TSNGYVTIGTGSDKQYQDMCKVMNLQHLALDPRY 487
++G + Q+ A P
Sbjct: 228 CADGRYVAVGAIEPQFYAAMLAGLGLDAAELPPQ 261
Score = 69.8 bits (170), Expect = 1e-13
Identities = 18/102 (17%), Positives = 29/102 (28%), Gaps = 6/102 (5%)
Query: 22 RVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVNSISQVFADEHIQDIKLVKEIS 81
L + + W +F V + +V + HI + E +
Sbjct: 263 DRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVLAFGEVHNEPHIIERNTFYEAN 322
Query: 82 HEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLKDLL 123
PA +S T + PPA + VL D
Sbjct: 323 GGW-----QPMPAPRFSRT-ASSQPRPPAATIDIEAVLTDWD 358
>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli
[TaxId: 562]}
Length = 417
Score = 230 bits (587), Expect = 3e-71
Identities = 89/296 (30%), Positives = 149/296 (50%), Gaps = 24/296 (8%)
Query: 214 SLPLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTY 273
S PL +++LD T + +GP CT +LA GA+VIK+E+P GD R + + Y
Sbjct: 2 STPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDID--ALY 59
Query: 274 FTCVNRNKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQL 333
FT +N NK+S+ ++ KT EG+++++ L ++ D+LVENF PG +D + ++H+ EIN +L
Sbjct: 60 FTMLNSNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRL 119
Query: 334 IYCSVTGFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGA 393
I+ S+ GF PY + Y+ +A + GG TG DGPP A D TG++
Sbjct: 120 IFGSIKGFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPPLVSAAALGDSNTGMHLLIG 179
Query: 394 VMAALLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLN-----------------AGIEG 436
++AALLH+ KTG+GQ++ ++ +++ + G
Sbjct: 180 LLAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRLDKLGYLEEYPQYPNGTFGDAV 239
Query: 437 KRWGTSHANVVPHQV-----FKTSNGYVTIGTGSDKQYQDMCKVMNLQHLALDPRY 487
R G + P + ++T T ++ +++ CK + DP Y
Sbjct: 240 PRGGNAGGGGQPGWILKCKGWETDPNAYIYFTIQEQNWENTCKAIGKPEWITDPAY 295
Score = 94.2 bits (233), Expect = 2e-21
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 2/138 (1%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
CK + DP Y T R + + EIE T+ E + P A V
Sbjct: 280 TCKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTIDKHEAVAYLTQFDIPCAPVL 339
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLK 120
S+ ++ D ++ V E+ G VG + +S P+++ P LGEHT VL+
Sbjct: 340 SMKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPMKFSAFTPDIK-AAPLLGEHTAAVLQ 398
Query: 121 DLLNYDETTIAKLKEKKI 138
+ L Y + IA +K+
Sbjct: 399 E-LGYSDDEIAAMKQNHA 415
>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter
formigenes [TaxId: 847]}
Length = 427
Score = 229 bits (583), Expect = 2e-70
Identities = 87/306 (28%), Positives = 142/306 (46%), Gaps = 36/306 (11%)
Query: 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFT 275
PL + +LD T + AGP CT ++ LGA VIK+E+ +GD R W N S YFT
Sbjct: 3 PLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVD--SLYFT 60
Query: 276 CVNRNKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIY 335
N NK+S+ +D KTPEG+++++ + K+ DV+VENF PG LDR+ ++++ E+N ++I
Sbjct: 61 MFNCNKRSIELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVIL 120
Query: 336 CSVTGFGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVM 395
SV G+ + Y+ +A GG TG DGPP G A D +G++ ++
Sbjct: 121 ASVKGYAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGDSNSGMHLMIGIL 180
Query: 396 AALLHKYKTGKGQKIDCNLLSTQVSMLINVGANYLNAGIEG------------------- 436
AAL ++KTG+GQK+ + ++++ + G
Sbjct: 181 AALEIRHKTGRGQKVAVAMQDAVLNLVRIKLRDQQRLERTGILAEYPQAQPNFAFDRDGN 240
Query: 437 ----------KRWGTSHANVVPHQVF-----KTSNGYVTIGTGSDKQYQDMCKVMNLQHL 481
R G + P + +T T + + +C +++
Sbjct: 241 PLSFDNITSVPRGGNAGGGGQPGWMLKCKGWETDADSYVYFTIAANMWPQICDMIDKPEW 300
Query: 482 ALDPRY 487
DP Y
Sbjct: 301 KDDPAY 306
Score = 96.2 bits (238), Expect = 5e-22
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 1 MCKVMNLQHLALDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVN 60
+C +++ DP Y T RV+ + IE K +K E P V
Sbjct: 291 ICDMIDKPEWKDDPAYNTFEGRVDKLMDIFSFIETKFADKDKFEVTEWAAQYGIPCGPVM 350
Query: 61 SISQVFADEHIQDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLK 120
S+ ++ D +Q + V E+ E G+ VG +S QPE+ P LGEHTD VLK
Sbjct: 351 SMKELAHDPSLQKVGTVVEVVDEIRGNHLTVGAPFKFSGFQPEIT-RAPLLGEHTDEVLK 409
Query: 121 DLLNYDETTIAKLKEKKI 138
+ L D+ I +L K++
Sbjct: 410 E-LGLDDAKIKELHAKQV 426
>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine
CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}
Length = 402
Score = 156 bits (394), Expect = 2e-43
Identities = 56/268 (20%), Positives = 102/268 (38%), Gaps = 14/268 (5%)
Query: 216 PLSNVRILDLTRIIAGPFCTMLLADLGAEVIKVEQPVTGDECRKWGPPFLNNTELSTYFT 275
PL+ +R++ IAGPF + A+ GAEVI +E D R Y
Sbjct: 8 PLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPN----------YPQ 57
Query: 276 CVNRNKKSVCVDFKTPEGQQIIKDLAKQCDVLVENFVPGKLDRLNLGYKHLSEINSQLIY 335
RN ++ ++ EG++ L + D+ +E R + + L + N +L+
Sbjct: 58 LSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVI 117
Query: 336 CSVTG--FGSKGPYKDRPGYDIIAASIGGLLHITGHPDGPPCKVGIASIDLATGLYAHGA 393
++G Y + P Y+ IA + G L G D P + + A
Sbjct: 118 AHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAA 177
Query: 394 VMAALLHKYKTGKGQKIDCNLLSTQVSML-INVGANYLNAGIEGKRWGTSHANVVPHQVF 452
+ A + TGKG+ ID + + M + + + + ++
Sbjct: 178 LAALHKVRE-TGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLY 236
Query: 453 KTSNGYVTIGTGSDKQYQDMCKVMNLQH 480
K ++GY+ + Q ++ K + L H
Sbjct: 237 KCADGYIVMELVGITQIEECFKDIGLAH 264
Score = 90.9 bits (224), Expect = 2e-20
Identities = 18/120 (15%), Positives = 46/120 (38%), Gaps = 1/120 (0%)
Query: 24 ENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVNSISQVFADEHIQDIKLVKEISHE 83
L+ ++++A T E F ++ A+V ++ ++ ++ + + +
Sbjct: 284 PYGPLVEEKLDAWLATHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTM 343
Query: 84 KYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLKDLLNYDETTIAKLKEKKILGLIE 143
K + ++ P+ G T +LK+ + Y E I +L K + + +
Sbjct: 344 DGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKN-IGYSENDIQELVSKGLAKVED 402
>d1g91a_ d.9.1.1 (A:) Myeloid progenitor inhibitory factor-1
(MPIF-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 29.7 bits (67), Expect = 0.15
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 146 TKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKN 179
TK C K+ + + K + K +KN
Sbjct: 44 TKKGRRFCANPSDKQVQVCMRMLKLDTRIKTRKN 77
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 31.1 bits (70), Expect = 0.24
Identities = 11/109 (10%), Positives = 30/109 (27%), Gaps = 6/109 (5%)
Query: 103 EVRTPPPALGEHTDYVLKDLLNYDETTIAKLKEKKILGLIERLTKNADPVCT------RE 156
+ P + T ++ + + + K K L + + C R+
Sbjct: 158 NCKNIPQEELQITQWIKEWHGEFLLERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRD 217
Query: 157 KAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKISLYENFYSLD 205
+ K + K+ + +K + + I + +
Sbjct: 218 WIIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLLNNC 266
Score = 27.7 bits (61), Expect = 2.8
Identities = 7/45 (15%), Positives = 19/45 (42%)
Query: 159 KKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKISLYENFYS 203
K+ + +K K+ + I + +N + + ++ + YS
Sbjct: 227 HTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLLNNCDAEYS 271
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 29.4 bits (66), Expect = 0.24
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNI 180
R K +K K K + + KK +I
Sbjct: 21 RAKNLEKAKAAGKGSQLEANKKAMSI 46
Score = 26.7 bits (59), Expect = 1.8
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 158 AKKKKKKKKKKKKKKKKKKKKNISVDKNSIN 188
K + K +K K K + +K +++
Sbjct: 15 QKSAMARAKNLEKAKAAGKGSQLEANKKAMS 45
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 28.3 bits (63), Expect = 0.50
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 136 KKILGLIERLTKNADPVCTREKAKKKK----------KKKKKKKKKKKKKKKK 178
+ILG + E A+K++ + KKKK+K++K
Sbjct: 34 NQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 86
>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
Length = 197
Score = 29.6 bits (66), Expect = 0.58
Identities = 15/135 (11%), Positives = 41/135 (30%), Gaps = 14/135 (10%)
Query: 91 VGPAVAYS-LTQPEVRTPPPALGEHTDYVLKDLLNYDETTIAKLKEKKILGLIERLTKNA 149
+G A Y+ + +P+ + V Y K+ + +++ + K
Sbjct: 10 LGTAEPYAYIAKPDYGNEERG-FGNPRGV------YKVDLTIPNKDPRCQRMVDEIVKCH 62
Query: 150 DPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKISLYENFYSLDLALS 209
E+A ++ + + KK + + + + + F
Sbjct: 63 ------EEAYAAAVEEYEANPPAVARGKKPLKPYEGDMPFFDNGDGTTTFKFKCYASFQD 116
Query: 210 SENPSLPLSNVRILD 224
+ N+ ++D
Sbjct: 117 KKTKETKHINLVVVD 131
>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia
coli [TaxId: 562]}
Length = 183
Score = 29.1 bits (65), Expect = 0.90
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 11/101 (10%)
Query: 360 IGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALLHKYKTGKGQKIDCNLLSTQV 419
+ +L + + I S G V+ A + Y T + K D + +
Sbjct: 34 VAQMLFLEAENPEKDIYLYINSP---------GGVITAGMSIYDTMQFIKPDVSTICMGQ 84
Query: 420 SMLINVGANYLNAGIEGKRWGTSHANVVPHQVFKTSNGYVT 460
+ ++GA L AG +GKR+ ++ V+ HQ G T
Sbjct: 85 AA--SMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQAT 123
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 27.6 bits (61), Expect = 1.0
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 160 KKKKKKKKKKKKKKKKKKKNIS 181
++ KK+ +KKK K+ +S
Sbjct: 5 REPKKRTTRKKKDPNAPKRALS 26
Score = 26.8 bits (59), Expect = 1.9
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 159 KKKKKKKKKKKKKKKKKKKKN 179
+ KK+ +KKK K+ +
Sbjct: 6 EPKKRTTRKKKDPNAPKRALS 26
Score = 26.8 bits (59), Expect = 2.2
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 154 TREKAKKKKKKKKKKKKKKKK 174
T + KK+ +KKK K+
Sbjct: 3 TPREPKKRTTRKKKDPNAPKR 23
Score = 26.8 bits (59), Expect = 2.2
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 159 KKKKKKKKKKKKKKKKKKK 177
++ KK+ +KKK K+
Sbjct: 5 REPKKRTTRKKKDPNAPKR 23
Score = 26.0 bits (57), Expect = 4.3
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 158 AKKKKKKKKKKKKKKKKKKKK 178
++ KK+ +KKK K
Sbjct: 2 VTPREPKKRTTRKKKDPNAPK 22
Score = 25.6 bits (56), Expect = 4.7
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 157 KAKKKKKKKKKKKKKKKKK 175
+ KK+ +KKK K+
Sbjct: 5 REPKKRTTRKKKDPNAPKR 23
Score = 25.6 bits (56), Expect = 5.5
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 152 VCTREKAKKKKKKKKKKKKKKK 173
V RE K+ +KKK K+
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKR 23
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 26.8 bits (59), Expect = 1.1
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 9/64 (14%)
Query: 116 DYVLKDLLNYDETTIAKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKK 175
+ + L K I +L + + + A++ K K K K+
Sbjct: 10 KELFEQGLAKFGRRWTK---------ISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP 60
Query: 176 KKKN 179
+K
Sbjct: 61 NQKT 64
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 27.5 bits (61), Expect = 1.3
Identities = 2/23 (8%), Positives = 10/23 (43%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKK 178
++ + + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 25.6 bits (56), Expect = 7.3
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 154 TREKAKKKKKKKKKKKKKKK 173
E + K+ +K++
Sbjct: 82 VPEGYEMKRVGDYYVFEKRE 101
Score = 25.2 bits (55), Expect = 7.6
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKN 179
K + + K+ +K+
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 28.4 bits (63), Expect = 2.0
Identities = 7/47 (14%), Positives = 14/47 (29%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKISLYENFY 202
+ KK+ K KK +K + + + E +
Sbjct: 229 TRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATF 275
Score = 26.9 bits (59), Expect = 6.1
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENE----NKISLYENFYS 203
+ K KK +K + + K +N E N+I+ +N Y+
Sbjct: 236 DVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFENEINKRDNLYN 287
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 411
Score = 28.5 bits (63), Expect = 2.2
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 126 DETTIAKLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISV 182
E L EK +L +E+ + K+K+ +K + + +
Sbjct: 30 AEKFADDLYEKGVLADLEKAFAAR----EIKSLASKRKEDLQKITFLSRDISQQFGI 82
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 28.1 bits (63), Expect = 2.2
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKK 177
+K +KK+ ++KK+ + +++K
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREK 125
Score = 27.8 bits (62), Expect = 2.9
Identities = 7/40 (17%), Positives = 20/40 (50%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKI 195
+ ++KK+ ++KK+ + +++K K D ++
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQV 142
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 28.0 bits (62), Expect = 2.5
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 155 REKAKKKKKKKKKKKKKKKKKK 176
R + ++K ++ K K+K +K++
Sbjct: 310 RRETEEKMRRAKLAKEKAEKER 331
Score = 28.0 bits (62), Expect = 2.8
Identities = 6/25 (24%), Positives = 17/25 (68%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNI 180
+K ++ ++K ++ K K+K +K+ +
Sbjct: 308 QKRRETEEKMRRAKLAKEKAEKERL 332
Score = 27.6 bits (61), Expect = 3.6
Identities = 5/24 (20%), Positives = 17/24 (70%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
+++ + ++K ++ K K+K +K++
Sbjct: 308 QKRRETEEKMRRAKLAKEKAEKER 331
Score = 27.2 bits (60), Expect = 4.8
Identities = 5/27 (18%), Positives = 15/27 (55%)
Query: 152 VCTREKAKKKKKKKKKKKKKKKKKKKK 178
+ +++ ++K ++ K K+K +K
Sbjct: 303 AVKENQKRRETEEKMRRAKLAKEKAEK 329
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 104
Score = 26.6 bits (59), Expect = 2.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKK 177
K + +++K+++KK KKKKKK
Sbjct: 83 RKIAEIREQKREQKKDKKKKKK 104
Score = 25.5 bits (56), Expect = 6.1
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 160 KKKKKKKKKKKKKKKKKKK 178
+ +++K+++KK KKKKKK
Sbjct: 86 AEIREQKREQKKDKKKKKK 104
Score = 25.5 bits (56), Expect = 7.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 152 VCTREKAKKKKKKKKKKKKKKKKK 175
+ + +++K+++KK KKKKKK
Sbjct: 81 LARKIAEIREQKREQKKDKKKKKK 104
>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 179
Score = 27.3 bits (60), Expect = 2.9
Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 11/121 (9%)
Query: 360 IGGLLHITGHPDGPPCKVGIASIDLATGLYAHGAVMAALLHKYKTGKGQKIDCNLLSTQV 419
+L + + I S G ++A + Y T D + +
Sbjct: 31 CAQILLLAAEDASKDISLYINS---------PGGSISAGMAIYDTMVLAPCDIATYAMGM 81
Query: 420 SMLINVGANYLNAGIEGKRWGTSHANVVPHQVFKTSNGYVTIGTGSDKQYQDMCKVMNLQ 479
+ ++G L AG +GKR+ HA ++ HQ G +Q+ + K M
Sbjct: 82 AA--SMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRL 139
Query: 480 H 480
+
Sbjct: 140 N 140
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 27.8 bits (62), Expect = 2.9
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 114 HTDYVLKDLLNY----DETTIAKLKEKKILGLIERLTK-NADPVCTREKAKKKKKKKKKK 168
+Y K++ D +EK I I L+K + + KA+ + +K+ K
Sbjct: 65 DHEYTTKEIFRKNFFKDWRKEMTNEEKNI---ITNLSKCDFTQMSQYFKAQTEARKQMSK 121
Query: 169 KKKKKKKKKK 178
++K K K++
Sbjct: 122 EEKLKIKEEN 131
Score = 27.4 bits (61), Expect = 3.4
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
+ +K+ K++K K K++ +K
Sbjct: 111 AQTEARKQMSKEEKLKIKEENEKL 134
Score = 27.0 bits (60), Expect = 5.0
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKI 195
+ + +K+ K++K K K++ +K + I D ++ +I
Sbjct: 111 AQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERI 150
Score = 26.2 bits (58), Expect = 9.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKK 178
E K+ K++K K K++ +K K
Sbjct: 113 TEARKQMSKEEKLKIKEENEKLLK 136
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase
{Clostridium thermocellum [TaxId: 1515]}
Length = 164
Score = 27.3 bits (60), Expect = 3.1
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 158 AKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKISLYE 199
A K K +K KK+ + K + + ++ K+ L
Sbjct: 6 ATTKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKVKLIN 47
>d1qzxa2 a.36.1.1 (A:295-432) Signal sequence binding protein Ffh
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 138
Score = 26.9 bits (59), Expect = 3.6
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 138 ILGLIERLTKNADPVCTREKAKKKKKKKKKKKKK 171
I ++E++ + +K +KK + + K K
Sbjct: 3 IESILEKVKGLEEY----DKIQKKMEDVMEGKGK 32
Score = 26.9 bits (59), Expect = 3.8
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKN 179
EK K ++ K +KK + + K
Sbjct: 8 EKVKGLEEYDKIQKKMEDVMEGKG 31
>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli
[TaxId: 562]}
Length = 100
Score = 25.9 bits (57), Expect = 4.6
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDE 190
KA++ K+ K K+ + K I D N+ +++
Sbjct: 6 KAREVKRVALADKYFAKRAELKAIISDVNASDED 39
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 26.9 bits (59), Expect = 4.6
Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 15/110 (13%)
Query: 118 VLKDLLNYDETTIAKLKEKKILGLIERLTKNADPVCTREK--AKKKKKK----------- 164
V + + N E + + + L +++ ++ + K +++ K
Sbjct: 82 VHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAEL 141
Query: 165 KKKKKKKKKKKKKKNISVDKNSINDENENKISLYENF--YSLDLALSSEN 212
KK +KK + K + S + D NK EN+ AL+ E
Sbjct: 142 KKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEER 191
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 26.4 bits (58), Expect = 4.7
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 163 KKKKKKKKKKKKKKKKNISVDKN-SINDENE 192
K K K K +++ K +N S + ++ +
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKEDGQ 32
Score = 26.4 bits (58), Expect = 5.1
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKNI 180
K K K K +++ K + + +K+ +
Sbjct: 2 KNKGKGGKNRRRGKNENESEKREL 25
>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 218
Score = 27.0 bits (59), Expect = 5.1
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENK 194
+ K KKK + + K+ I K +E
Sbjct: 138 ASVLNTKASFSKKKSRVQMVKELIDGQKILFENEEALY 175
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 25.5 bits (56), Expect = 5.4
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 159 KKKKKKKKKKKKKKKKKK 176
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.5 bits (56), Expect = 5.4
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 160 KKKKKKKKKKKKKKKKKK 177
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.5 bits (56), Expect = 5.4
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 161 KKKKKKKKKKKKKKKKKK 178
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 26.6 bits (58), Expect = 5.6
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 142 IERLTKNADPVCTREKAKKKKKKKKKKKKKK 172
ERL K RE + + + + +K+
Sbjct: 156 FERLPKP-----KREAFLEANRAELVRFQKE 181
Score = 25.9 bits (56), Expect = 9.8
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKK 177
K K++ + + + + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 25.4 bits (56), Expect = 5.7
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 153 CTREKAKKKKKKKKKKKKKKKKKKKK 178
+ E+ KKK ++ + K+K K +
Sbjct: 67 ASDEEVKKKLEESNLTEYMKEKIKIR 92
Score = 25.0 bits (55), Expect = 9.5
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 155 REKAKKKKKKKKKKKKKKKKKKKKNISV 182
++ KKK ++ + K+K K +
Sbjct: 68 SDEEVKKKLEESNLTEYMKEKIKIRMPT 95
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 237
Score = 26.6 bits (58), Expect = 6.2
Identities = 23/174 (13%), Positives = 56/174 (32%), Gaps = 16/174 (9%)
Query: 12 LDPRYLTGALRVENRELLCKEIEAKTMEKTTEEWLLIFQGVSFPYAQVNSISQVFADEHI 71
LD + +V+ EI KT+E + + S+ +
Sbjct: 19 LDDDFKEMERKVDVTSRAVMEIMTKTIE---------YLQPNPASRAKLSMINTMSKIRG 69
Query: 72 QDIKLVKEISHEKYGDIKIVGPAVAYSLTQPEVRTPPPALGEHTDYVLKDLLNYDETTIA 131
Q+ + + + + + PALGE + +++L ++
Sbjct: 70 QEKGPGYPQAEALLAEA-----MLKFGRELGDDCNFGPALGEVGE-AMRELSEVKDSLDI 123
Query: 132 KLKEKKILGLIERLTKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKNISVDKN 185
++ ++ + ++ L KK + ++ KKK++ D+
Sbjct: 124 EV-KQNFIDPLQNLHDKDLREIQSALQHHLKKLEGRRLDFDYKKKRQGKIPDEE 176
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 26.9 bits (59), Expect = 6.2
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 156 EKAKKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENK 194
K K++ K+ K+ ++ +K + + SI E K
Sbjct: 248 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLK 286
Score = 26.6 bits (58), Expect = 7.7
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 136 KKILGLIERLTKNADPVCTREKAK--------KKKKKKKKKKKKKKKKKKKNISVDKNSI 187
K++ ++ K K K KKK++ K+ K+ ++ +K + S
Sbjct: 216 TKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYKMYSE 275
Query: 188 NDENENKISLYENF 201
+ ++ L +
Sbjct: 276 FKSIKPEVYLKKYS 289
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 25.5 bits (55), Expect = 6.5
Identities = 7/42 (16%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 144 RLTKNADPVCTRE-KAKKKKKKKKKKKKKKKKKKKKNISVDK 184
R K + K+ K+K ++ ++K++ ++K
Sbjct: 62 RFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELEK 103
>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 127
Score = 25.9 bits (57), Expect = 6.7
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 164 KKKKKKKKKKKKKKKNISVDKN 185
+ KK++K++ K +K +V K
Sbjct: 2 RNKKQRKQQVKLRKPGFAVAKY 23
Score = 25.5 bits (56), Expect = 9.1
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 159 KKKKKKKKKKKKKKKKKKKKNISV 182
KK++K++ K +K K + +
Sbjct: 3 NKKQRKQQVKLRKPGFAVAKYVRM 26
>d1rjta_ d.9.1.1 (A:) Small inducible cytokine b11 (CXCL11/I-TAC)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 24.8 bits (54), Expect = 6.8
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 279 RNKKSVCVDFKTPEGQQIIKDLAKQ 303
NK C++ K+ + + IIK + ++
Sbjct: 47 ENKGQRCLNPKSKQARLIIKKVERK 71
>d1eiga_ d.9.1.1 (A:) Eotaxin-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 24.8 bits (54), Expect = 6.9
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 146 TKNADPVCTREKAKKKKKKKKKKKKKKKKKKKK 178
TK C K + ++ K K+KK +
Sbjct: 41 TKKGQQSCGDPKQEWVQRYMKNLDAKQKKASPR 73
>d2nrha1 c.55.1.13 (A:1-82) Type III pantothenate kinase, CoaX
{Campylobacter jejuni [TaxId: 197]}
Length = 82
Score = 25.1 bits (55), Expect = 7.1
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 159 KKKKKKKKKKKKKKKKKKKKNISVDKNSINDENENKISLYENFYSL 204
K + + K ++K I+V N+ + + +NF +L
Sbjct: 18 KYFTLNIDQFLEFKNEQKIFYINV-----NEHLKEHLKNQKNFINL 58
>d1j8ia_ d.9.1.1 (A:) Lymphotactin {Human (Homo sapiens) [TaxId:
9606]}
Length = 93
Score = 24.8 bits (54), Expect = 8.5
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 146 TKNADPVCTREKAKKKKKKKKKKKKKKKKKKKKN 179
TK VC +A + + +K +
Sbjct: 41 TKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMI 74
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 25.6 bits (56), Expect = 8.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 154 TREKAKKKKKKKKKKKKKKKKKKK 177
TR A+ +K +K KKK +K
Sbjct: 102 TRTNARTRKGPRKTVAGKKKAPRK 125
>d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia coli
[TaxId: 562]}
Length = 56
Score = 24.2 bits (53), Expect = 8.7
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 157 KAKKKKKKKKKKKKKKKKKKKKNISVDKNS 186
+ K + K+ ++ ++SVDK S
Sbjct: 4 QNKPTRSKRGMRRSHDALTAVTSLSVDKTS 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.395
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,843,221
Number of extensions: 89571
Number of successful extensions: 1032
Number of sequences better than 10.0: 1
Number of HSP's gapped: 786
Number of HSP's successfully gapped: 114
Length of query: 501
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 412
Effective length of database: 1,185,626
Effective search space: 488477912
Effective search space used: 488477912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.2 bits)