BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16438
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin
Ligase
Length = 398
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 127/270 (47%), Gaps = 8/270 (2%)
Query: 170 KSCAFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMP 229
K F G + +A+ G +++ + P + + + L DL ID F L + +
Sbjct: 131 KYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDLESIDPEFYNSLIWVKENN 190
Query: 230 GEEVNALQMPFSTASSS-NQFYVH-LNPFENDI--TESNIRQYVVLVLQFRLHE-FDERI 284
EE + L+M FS + H L P +I TE N +Y+ +V ++RL +E+
Sbjct: 191 IEECD-LEMYFSVDKEILGEIKSHDLKPNGGNILVTEENKEEYIRMVAEWRLSRGVEEQT 249
Query: 285 HYVRKGLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFW 344
+G +++P L F E+E L+C EI ++ ++ Y+ T+ QI+WFW
Sbjct: 250 QAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQRHAIYR-RYARTSKQIMWFW 308
Query: 345 EVLEEMSNQDRVLFIRFVSGRSRLAKSA-REFRGLKFEIQFLDRDCDPDTLFPESSTCFF 403
+ ++E+ N+ R+ ++FV+G RL + G +F + P S TCF
Sbjct: 309 QFVKEIDNEKRMRLLQFVTGTCRLPVGGFADLMGSNGPQKFCIEKVGKENWLPRSHTCFN 368
Query: 404 LLRLPRYTNKDTLKHKLVEAIHLSKAINTD 433
L LP Y + + LK KL+ AI ++ +
Sbjct: 369 RLDLPPYKSYEQLKEKLLFAIEETEGFGQE 398
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect
pdb|3JVZ|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 134/267 (50%), Gaps = 7/267 (2%)
Query: 173 AFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEE 232
F G + G+A+ G L+ F P + ++ G ++L+D+ +D + L + + E
Sbjct: 121 TFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILENDPTE 180
Query: 233 VNALQMPFSTASSSNQFYVHLNPFENDI--TESNIRQYVVLVLQFR-LHEFDERIHYVRK 289
++ L + + V L P ++I T N R+Y+ LV+Q+R ++ ++++ +
Sbjct: 181 LD-LMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLE 239
Query: 290 GLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLEE 349
G +++P+ L+ +F E+E L+C ++ ++ +Q + YK+ P I WFW+ +
Sbjct: 240 GFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLL 299
Query: 350 MSNQDRVLFIRFVSGRSRLAKSA-REFRGLKFEIQF-LDRDCDPDTLFPESSTCFFLLRL 407
M + R+ ++FV+G SR+ + E G F +++ P+ L P + T F L L
Sbjct: 300 MDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQWGSPEKL-PRAHTAFNRLDL 358
Query: 408 PRYTNKDTLKHKLVEAIHLSKAINTDD 434
P Y + L+ KL+ A+ ++ D
Sbjct: 359 PPYETFEDLREKLLMAVENAQGFEGVD 385
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect
pdb|3JW0|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 134/267 (50%), Gaps = 7/267 (2%)
Query: 173 AFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEE 232
F G + G+A+ G L+ F P + ++ G ++L+D+ +D + L + + E
Sbjct: 121 TFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILENDPTE 180
Query: 233 VNALQMPFSTASSSNQFYVHLNPFENDI--TESNIRQYVVLVLQFR-LHEFDERIHYVRK 289
++ L + + V L P ++I T N R+Y+ LV+Q+R ++ ++++ +
Sbjct: 181 LD-LMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLE 239
Query: 290 GLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLEE 349
G +++P+ L+ +F E+E L+C ++ ++ +Q + YK+ P I WFW+ +
Sbjct: 240 GFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLL 299
Query: 350 MSNQDRVLFIRFVSGRSRLAKSA-REFRGLKFEIQF-LDRDCDPDTLFPESSTCFFLLRL 407
M + R+ ++FV+G SR+ + E G F +++ P+ L P + T F L L
Sbjct: 300 MDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQWGSPEKL-PRAHTSFNRLDL 358
Query: 408 PRYTNKDTLKHKLVEAIHLSKAINTDD 434
P Y + L+ KL+ A+ ++ D
Sbjct: 359 PPYETFEDLREKLLMAVENAQGFEGVD 385
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation
Mediated By The Wwp1 Hect Domain E3 Ligase
Length = 374
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 116/258 (44%), Gaps = 8/258 (3%)
Query: 173 AFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEE 232
F G + +A+ G +++ + P + + L++ DL ID F L + EE
Sbjct: 115 CFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEE 174
Query: 233 VNALQMPFST----ASSSNQFYVHLNPFENDITESNIRQYVVLVLQFRLHE-FDERIHYV 287
L+M FS + L +TE N +Y+ L+ ++R E+
Sbjct: 175 C-GLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAF 233
Query: 288 RKGLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEVL 347
G +V+P+ L F E+E ++C E+ + ++ T Y+ + QIIWFW+ +
Sbjct: 234 LDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYR-HYTRNSKQIIWFWQFV 292
Query: 348 EEMSNQDRVLFIRFVSGRSRLAKSA-REFRGLKFEIQFLDRDCDPDTLFPESSTCFFLLR 406
+E N+ R+ ++FV+G RL E G +F DT P S TCF L
Sbjct: 293 KETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVGKDTWLPRSHTCFNRLD 352
Query: 407 LPRYTNKDTLKHKLVEAI 424
LP Y + + LK KL+ AI
Sbjct: 353 LPPYKSYEQLKEKLLFAI 370
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
pdb|2XBF|A Chain A, Nedd4 Hect Structure
Length = 386
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 127/265 (47%), Gaps = 3/265 (1%)
Query: 173 AFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEE 232
F G + G+A+ G L+ F P + ++ ++LHD+ +D + L + + E
Sbjct: 122 KFIGRVAGMAVYHGKLLDGFFIRPFYKMMLHKPITLHDMESVDSEYYNSLRWILENDPTE 181
Query: 233 VN-ALQMPFSTASSSNQFYVHLNPFENDITESNIRQYVVLVLQFR-LHEFDERIHYVRKG 290
++ + ++Q + E +T N ++Y+ LV+Q+R ++ +++ ++G
Sbjct: 182 LDLRFIIDEELFGQTHQHELKNGGSEIVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEG 241
Query: 291 LYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLEEM 350
+++IP L+ +F E+E L+C ++ ++ ++ T YK+ + I WFW+ + M
Sbjct: 242 FFELIPQDLIKIFDENELELLMCGLGDVDVNDWREHTKYKNGYSANHQVIQWFWKAVLMM 301
Query: 351 SNQDRVLFIRFVSGRSRLAKSA-REFRGLKFEIQFLDRDCDPDTLFPESSTCFFLLRLPR 409
++ R+ ++FV+G SR+ + E G F P + TCF L LP
Sbjct: 302 DSEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQSFTVEQWGTPEKLPRAHTCFNRLDLPP 361
Query: 410 YTNKDTLKHKLVEAIHLSKAINTDD 434
Y + + L KL AI ++ + D
Sbjct: 362 YESFEELWDKLQMAIENTQGFDGVD 386
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
Length = 392
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 126/257 (49%), Gaps = 7/257 (2%)
Query: 173 AFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEE 232
F G + G+A+ G L+ F P + G ++L+D +D + L + + E
Sbjct: 136 TFIGRVAGLAVFHGKLLDGFFIRPFYKXXLGKQITLNDXESVDSEYYNSLKWILENDPTE 195
Query: 233 VNALQMPFSTASSSNQFYVHLNPFENDI--TESNIRQYVVLVLQFR-LHEFDERIHYVRK 289
++ L + + V L P ++I T N R+Y+ LV+Q+R ++ ++ + +
Sbjct: 196 LD-LXFCIDEENFGQTYQVDLKPNGSEIXVTNENKREYIDLVIQWRFVNRVQKQXNAFLE 254
Query: 290 GLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLEE 349
G +++P+ L+ +F E+E L C ++ ++ +Q + YK+ P I WFW+ +
Sbjct: 255 GFTELLPIDLIKIFDENELELLXCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLL 314
Query: 350 MSNQDRVLFIRFVSGRSRLAKSA-REFRGLKFEIQF-LDRDCDPDTLFPESSTCFFLLRL 407
+ R+ ++FV+G SR+ + E G F +++ P+ L P + TCF L L
Sbjct: 315 XDAEKRIRLLQFVTGTSRVPXNGFAELYGSNGPQLFTIEQWGSPEKL-PRAHTCFNRLDL 373
Query: 408 PRYTNKDTLKHKLVEAI 424
P Y + L+ KL+ A+
Sbjct: 374 PPYETFEDLREKLLXAV 390
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 122/264 (46%), Gaps = 19/264 (7%)
Query: 174 FQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEV 233
F G ++ A+ L + + + G + D+ D +F L + + +V
Sbjct: 123 FVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLE---NDV 179
Query: 234 NALQMPFSTASSSNQFYV----HLNPFENDI--TESNIRQYVVLVLQFRL-HEFDERIHY 286
+ L + ++ +F V L P +I TE N ++YV LV Q R+ +++
Sbjct: 180 STLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAA 239
Query: 287 VRKGLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEV 346
+G Y++IP L+ +F+ E+E L+ P I ID LK T Y + + QI WFW
Sbjct: 240 FLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYH-KYQSNSIQIQWFWRA 298
Query: 347 LEEMSNQDRVLFIRFVSGRSRLA-KSAREFRGL----KFEIQFLDRDCDPDTLFPESSTC 401
L DR F++FV+G S++ + G+ KF+I DR D P + TC
Sbjct: 299 LRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDR---LPSAHTC 355
Query: 402 FFLLRLPRYTNKDTLKHKLVEAIH 425
F L LP Y + + L+H L+ AI
Sbjct: 356 FNQLDLPAYESFEKLRHMLLLAIQ 379
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 122/264 (46%), Gaps = 19/264 (7%)
Query: 174 FQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEV 233
F G ++ A+ L + + + G + D+ D +F L + + +V
Sbjct: 140 FVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLE---NDV 196
Query: 234 NALQMPFSTASSSNQFYVH----LNPFENDI--TESNIRQYVVLVLQFRL-HEFDERIHY 286
+ L + ++ +F V L P +I TE N ++YV LV Q R+ +++
Sbjct: 197 STLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAA 256
Query: 287 VRKGLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEV 346
+G Y++IP L+ +F+ E+E L+ P I ID LK T Y + + QI WFW
Sbjct: 257 FLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYH-KYQSNSIQIQWFWRA 315
Query: 347 LEEMSNQDRVLFIRFVSGRSRLA-KSAREFRGL----KFEIQFLDRDCDPDTLFPESSTC 401
L DR F++FV+G S++ + G+ KF+I DR D P + TC
Sbjct: 316 LRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDR---LPSAHTC 372
Query: 402 FFLLRLPRYTNKDTLKHKLVEAIH 425
F L LP Y + + L+H L+ AI
Sbjct: 373 FNQLDLPAYESFEKLRHMLLLAIQ 396
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 5/256 (1%)
Query: 173 AFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEE 232
F G ++G+ + +L+ F ++ ++ + L D+ +D L+ M + +
Sbjct: 166 KFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEVYNSLNWMLENSIDG 225
Query: 233 VNALQMPFSTASSSNQFYVHLNPFENDI--TESNIRQYVVLVLQFRL-HEFDERIHYVRK 289
V L V L P +I T+ N ++YV L Q+R+ E+
Sbjct: 226 VLDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMD 285
Query: 290 GLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLEE 349
G ++IP L+ +F E+E L+ EI I+ K+ T Y+ + I WFW+ + E
Sbjct: 286 GFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTDYRGYQE-SDEVIQWFWKCVSE 344
Query: 350 MSNQDRVLFIRFVSGRSRLAKSA-REFRGLKFEIQFLDRDCDPDTLFPESSTCFFLLRLP 408
N+ R ++F +G SR+ + ++ +G +F P+S TCF + LP
Sbjct: 345 WDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRFTIEKAGEVQQLPKSHTCFNRVDLP 404
Query: 409 RYTNKDTLKHKLVEAI 424
+Y + D++K KL A+
Sbjct: 405 QYVDYDSMKQKLTLAV 420
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|B Chain B, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|C Chain C, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1D5F|A Chain A, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|B Chain B, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|C Chain C, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
Length = 358
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 22/268 (8%)
Query: 176 GILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNA 235
GI+LG+AI L++ ++ L G + DL + L ++ + G +
Sbjct: 99 GIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDD 158
Query: 236 LQMPFSTASSSNQFYVHLNPFEND---------ITESNIRQYVVLVLQFRLHE-FDERIH 285
+ + F + + + NP D IT N +++V L + L++ +++
Sbjct: 159 MMITFQISQTD----LFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFK 214
Query: 286 YVRKGLYQVI-PVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFW 344
R+G + V PL +LF EIE L+C + + L++ T Y + I FW
Sbjct: 215 AFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFW 274
Query: 345 EVLEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLKFEIQFLDRDCDPDT-LFPESSTCFF 403
E++ +++ + LF++F +G R GL +++ + PDT P S TCF
Sbjct: 275 EIVHSFTDEQKRLFLQFTTGTDRAPVG-----GLG-KLKMIIAKNGPDTERLPTSHTCFN 328
Query: 404 LLRLPRYTNKDTLKHKLVEAIHLSKAIN 431
+L LP Y++K+ LK +L++AI +K
Sbjct: 329 VLLLPEYSSKEKLKERLLKAITYAKGFG 356
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By
Anchoring The E2 To The Hect Domain
Length = 380
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 117/261 (44%), Gaps = 16/261 (6%)
Query: 174 FQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEID----QNFITVLSNMTQMP 229
F G + G A+ GHY++ P + L G ++L D +D + + +L N +
Sbjct: 117 FVGRIXGXAVFHGHYIDGGFTLPFYKQLLGKSITLDDXELVDPDLHNSLVWILEN--DIT 174
Query: 230 GEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQYVVLVLQFR-LHEFDERIHYVR 288
G + + + Q + N + E N ++YV L + +R L + + ++
Sbjct: 175 GVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQ 234
Query: 289 KGLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQ---IIWFWE 345
KG +VIP LL F E+E ++C +I ++ K T + TP + WFW+
Sbjct: 235 KGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNT----RLKHCTPDSNIVKWFWK 290
Query: 346 VLEEMSNQDRVLFIRFVSGRSRLA-KSAREFRGLKFEIQFLDRDCDPDT-LFPESSTCFF 403
+E + R ++FV+G SR+ + + +G F D T P++ TCF
Sbjct: 291 AVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDACTNNLPKAHTCFN 350
Query: 404 LLRLPRYTNKDTLKHKLVEAI 424
+ +P Y + + L KL+ AI
Sbjct: 351 RIDIPPYESYEKLYEKLLTAI 371
>pdb|3PT3|A Chain A, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
pdb|3PT3|B Chain B, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
Length = 118
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 316 PEISIDVLKQVTFYKDEMNVTTPQII----WFWEVLEEMSNQDRVLFIRFVSGRSRLAKS 371
P S+ +L T + DE +++ WFW ++E+MS +R + F + L S
Sbjct: 2 PLGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPAS 61
Query: 372 AREFRGLKFEIQFLDRDCDPDTLFPESSTCFFLLRLPRYTNKDTLKHKLVEAIH 425
F+ + R D D P ++TC L +P Y++K LK KL+ AI
Sbjct: 62 EEGFQPMP---SITIRPPD-DQHLPTANTCISRLYVPLYSSKQILKQKLLLAIK 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,266,365
Number of Sequences: 62578
Number of extensions: 527201
Number of successful extensions: 1184
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1139
Number of HSP's gapped (non-prelim): 15
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)