RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16438
(458 letters)
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase). The name
HECT comes from Homologous to the E6-AP Carboxyl
Terminus.
Length = 298
Score = 200 bits (512), Expect = 3e-61
Identities = 96/255 (37%), Positives = 141/255 (55%), Gaps = 11/255 (4%)
Query: 176 GILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNA 235
G L+G AI G L+L W L G ++L DL E+D L ++ ++ G+
Sbjct: 45 GALIGKAIYNGILLDLPFPPAFWKKLLGKPITLEDLEEVDPELYRSLKSLLELDGD-EEE 103
Query: 236 LQMPFSTASSSNQFYVHLNPFENDI--TESNIRQYVVLVLQFRLHE-FDERIHYVRKGLY 292
L + F T S + + L P ++I T N +YV L + +RL+E +++ R+G Y
Sbjct: 104 LCLTF-TVSGEGEGTIELIPNGSNIPVTNENKEEYVNLYVDYRLNESIKKQLEAFREGFY 162
Query: 293 QVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLEEMSN 352
VIP LL LF+ E+E L+C +PEI ++ LK+ T Y + +P I WFWEVLEE +
Sbjct: 163 SVIPKELLSLFTPEELELLICGSPEIDVEDLKKNTEYDGGYSKNSPTIKWFWEVLEEFTQ 222
Query: 353 QDRVLFIRFVSGRSRLAKSAREFRGLKFEIQFLDRDCDPDTLFPESSTCFFLLRLPRYTN 412
++R F++FV+G SRL F+ LK IQ D D D L P + TCF L+LP Y++
Sbjct: 223 EERRKFLKFVTGSSRL--PLGGFKKLKITIQRKD---DDDRL-PTAHTCFNRLKLPPYSS 276
Query: 413 KDTLKHKLVEAIHLS 427
K+ LK KL+ AI
Sbjct: 277 KEILKEKLLIAIEEG 291
Score = 77.0 bits (190), Expect = 1e-15
Identities = 59/237 (24%), Positives = 93/237 (39%), Gaps = 39/237 (16%)
Query: 15 SELCEELRDNSLLKVLIPTPNSNDENGSNRDKFILNPDPFAAAGSNDKLFFFLGILLGIA 74
+ L +EL + TPNS + + ++++LF FLG L+G A
Sbjct: 1 TLLSKELFNPDYGLFFYVTPNSG---------LLWPNPGSPESSADEELFKFLGALIGKA 51
Query: 75 IRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMPFST 134
I G L+L W L G ++L DL E+D L ++ ++ G + L + F T
Sbjct: 52 IYNGILLDLPFPPAFWKKLLGKPITLEDLEEVDPELYRSLKSLLELDG-DEEELCLTF-T 109
Query: 135 ASSSNQFYVHLNPFENDI--TESNIRQYVVLPTTRYSKSCAFQGILLGI-AIRTG----- 186
S + + L P ++I T N +YV L Y + I + A R G
Sbjct: 110 VSGEGEGTIELIPNGSNIPVTNENKEEYVNL----YVDYRLNESIKKQLEAFREGFYSVI 165
Query: 187 --HYLNLFLAEPIWTLLSG-DILSLHDLME-------------IDQNFITVLSNMTQ 227
L+LF E + L+ G + + DL + + F VL TQ
Sbjct: 166 PKELLSLFTPEELELLICGSPEIDVEDLKKNTEYDGGYSKNSPTIKWFWEVLEEFTQ 222
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a
subclass of Ubiquitin-protein ligase (E3). It binds
specific ubiquitin-conjugating enzymes (E2), accepts
ubiquitin from E2, transfers ubiquitin to substrate
lysine side chains, and transfers additional ubiquitin
molecules to the end of growing ubiquitin chains.
Length = 352
Score = 188 bits (480), Expect = 8e-56
Identities = 91/260 (35%), Positives = 137/260 (52%), Gaps = 14/260 (5%)
Query: 174 FQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEID----QNFITVLSNMTQMP 229
F G LLG A+ G L+L + + L G LSL DL E+D ++ +L N
Sbjct: 93 FLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGDED 152
Query: 230 GEEVN-ALQMPFSTASSSNQFYVHLNPFENDI--TESNIRQYVVLVLQFRLH-EFDERIH 285
E+ +++ S + V L P DI T N +YV L + +RL+ +E++
Sbjct: 153 DLELTFTIELDSSFGGAVT---VELKPGGRDIPVTNENKEEYVDLYVDYRLNKGIEEQVE 209
Query: 286 YVRKGLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWE 345
R G +VIP LL LF+ E+E L+C + +I ++ LK+ T YK + +P I WFWE
Sbjct: 210 AFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNTEYKGGYSSDSPTIQWFWE 269
Query: 346 VLEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLKFEIQFLDRDCDPDTLFPESSTCFFLL 405
VLE +N++R F++FV+G SRL F L + D L P + TCF LL
Sbjct: 270 VLESFTNEERKKFLQFVTGSSRL--PVGGFADLNPKFTIRRVGSPDDRL-PTAHTCFNLL 326
Query: 406 RLPRYTNKDTLKHKLVEAIH 425
+LP Y++K+ L+ KL+ AI+
Sbjct: 327 KLPPYSSKEILREKLLYAIN 346
Score = 74.1 bits (183), Expect = 2e-14
Identities = 77/275 (28%), Positives = 106/275 (38%), Gaps = 49/275 (17%)
Query: 1 ESVDDAGGGYNECLSELCEELRDNSLLKVLIPTPNSNDENGSNRDKFILNPDPFAAAGSN 60
E DAGG E + + +EL N + TP+ + NP FA +
Sbjct: 37 EEGIDAGGVTREFFTLVSKELF-NPSYGLFRYTPD-------DSGLLYPNPSSFADE-DH 87
Query: 61 DKLFFFLGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEID----QNFITVLSN 116
KLF FLG LLG A+ G L+L + + L G LSL DL E+D ++ +L N
Sbjct: 88 LKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKSLKELLDN 147
Query: 117 MTQMPGEEVN-ALQMPFSTASSSNQFYVHLNPFENDI--TESNIRQYVVLPTTRYSKSCA 173
E+ +++ S + V L P DI T N +YV Y
Sbjct: 148 DGDEDDLELTFTIELDSSFGGAVT---VELKPGGRDIPVTNENKEEYV----DLYVDYRL 200
Query: 174 FQGILLGI-AIRTG-------HYLNLFLAEPIWTLLSGDI-LSLHDLME----------- 213
+GI + A R G L+LF E + L+ G + L DL +
Sbjct: 201 NKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNTEYKGGYSSD 260
Query: 214 --IDQNFITVLSNMTQMPGEEVNALQMPFSTASSS 246
Q F VL + T E LQ F T SS
Sbjct: 261 SPTIQWFWEVLESFTNE--ERKKFLQ--FVTGSSR 291
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus
with. E3 ubiquitin-protein ligases. Can bind to E2
enzymes.
Length = 328
Score = 168 bits (428), Expect = 2e-48
Identities = 97/323 (30%), Positives = 150/323 (46%), Gaps = 34/323 (10%)
Query: 110 FITVLSNMTQMPGEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQYVVLPTTRYS 169
F +LS E N F + + Y NP E ++ + +
Sbjct: 26 FFFLLS------KELFNPDYGLFRYSPNDYLLYP--NPRSGFANEEHLSYFRFI------ 71
Query: 170 KSCAFQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQM- 228
G +LG A+ L+LF A P + L G ++LHDL +D ++ +
Sbjct: 72 ------GRVLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELY---KSLKWLL 122
Query: 229 ---PGEEVNALQMPFSTASSSNQFYVH-LNPFENDI--TESNIRQYVVLVLQFRL-HEFD 281
E L S Q V L P ++I TE N ++YV LV+++RL +
Sbjct: 123 LNNDTSEELDLTFSIVLTSEFGQVKVVELKPGGSNIPVTEENKKEYVHLVIEYRLNKGIE 182
Query: 282 ERIHYVRKGLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQII 341
+++ R+G +VIP LL LF E+E L+C +PEI +D LK T YK + + I
Sbjct: 183 KQLEAFREGFSEVIPENLLKLFDPEELELLICGSPEIDVDDLKSNTEYKGGYSANSQTIK 242
Query: 342 WFWEVLEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLKFEIQFLDRDCDPDTLFPESSTC 401
WFWEV+E +N++R ++FV+G SRL F L + + + D P + TC
Sbjct: 243 WFWEVVESFTNEERRKLLQFVTGSSRL--PVGGFAALSPKFT-IRKAGSDDERLPTAHTC 299
Query: 402 FFLLRLPRYTNKDTLKHKLVEAI 424
F L+LP Y++K+ L+ KL+ AI
Sbjct: 300 FNRLKLPPYSSKEILREKLLLAI 322
Score = 60.7 bits (148), Expect = 3e-10
Identities = 67/279 (24%), Positives = 95/279 (34%), Gaps = 57/279 (20%)
Query: 1 ESVDDAGGGYNECLSELCEELRDNSLLKVLIPTPNSNDENGSNRDKFILNPDPFAAAGSN 60
E D GG E L +EL + + +PN NP A +
Sbjct: 14 EEGLDGGGVTREFFFLLSKELFNPDYG-LFRYSPNDY--------LLYPNPRSGFANEEH 64
Query: 61 DKLFFFLGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQM 120
F F+G +LG A+ L+LF A P + L G ++LHDL +D ++ +
Sbjct: 65 LSYFRFIGRVLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELY---KSLKWL 121
Query: 121 ----PGEEVNALQMPFSTASSSNQFYVH-LNPFENDI--TESNIRQYVVLPT-----TRY 168
E L S Q V L P ++I TE N ++YV L
Sbjct: 122 LLNNDTSEELDLTFSIVLTSEFGQVKVVELKPGGSNIPVTEENKKEYVHLVIEYRLNKGI 181
Query: 169 SKSCAFQGILLGIAIRTG-------HYLNLFLAEPIWTLLSGDI-LSLHDLME------- 213
K A R G + L LF E + L+ G + + DL
Sbjct: 182 EKQLE--------AFREGFSEVIPENLLKLFDPEELELLICGSPEIDVDDLKSNTEYKGG 233
Query: 214 ------IDQNFITVLSNMTQMPGEEVNALQMPFSTASSS 246
+ F V+ + T E LQ F T SS
Sbjct: 234 YSANSQTIKWFWEVVESFTNE--ERRKLLQ--FVTGSSR 268
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational
modification, protein turnover, chaperones].
Length = 872
Score = 122 bits (309), Expect = 7e-30
Identities = 72/261 (27%), Positives = 127/261 (48%), Gaps = 14/261 (5%)
Query: 174 FQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEV 233
F G ++G AI L++ ++ + L G +SL DL +D L + +E
Sbjct: 607 FLGRVIGKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNNDIDET 666
Query: 234 NALQMPFSTASSSNQFYVHLNPFEN----DITESNIRQYVVLVLQFRLHE-FDERIHYVR 288
L + F+ S + N +T N ++YV V+ ++L++ +++ +
Sbjct: 667 I-LDLTFTVEDDSFGESRTVELIPNGRNISVTNENKKEYVKKVVDYKLNKRVEKQFSAFK 725
Query: 289 KGLYQVIPVPLLHLFSGAEIETLVCSTPE-ISIDVLKQVTFYKDEMNVTTPQIIWFWEVL 347
G ++IP LL +F +E+E L+ PE I ID K T Y +P I+WFWE++
Sbjct: 726 SGFSEIIPPDLLQIFDESELELLIGGIPEDIDIDDWKSNTAY-HGYTEDSPIIVWFWEII 784
Query: 348 EEMSNQDRVLFIRFVSGRSRLAKSAREFRGLKFEIQF----LDRDCDPDTLFPESSTCFF 403
E ++R ++FV+G SR+ + F+ L+ +++ D P + TCF
Sbjct: 785 SEFDFEERAKLLQFVTGTSRIPING--FKDLQGSDGVRKFTIEKGGTDDDRLPSAHTCFN 842
Query: 404 LLRLPRYTNKDTLKHKLVEAI 424
L+LP Y++K+ L+ KL+ AI
Sbjct: 843 RLKLPEYSSKEKLRSKLLTAI 863
Score = 43.6 bits (103), Expect = 2e-04
Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 6/122 (4%)
Query: 45 DKFILNPDPFAAAGSND-KLFFFLGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDL 103
D + L +P ++ F FLG ++G AI L++ ++ + L G +SL DL
Sbjct: 585 DLYTLPINPLSSINPEHLSYFKFLGRVIGKAIYDSRILDVQFSKAFYKKLLGKPVSLVDL 644
Query: 104 MEIDQNFITVLSNMTQMPGEEVNALQMPFSTASSSNQFYVHLNPFEN----DITESNIRQ 159
+D L + +E L + F+ S + N +T N ++
Sbjct: 645 ESLDPELYRSLVWLLNNDIDETI-LDLTFTVEDDSFGESRTVELIPNGRNISVTNENKKE 703
Query: 160 YV 161
YV
Sbjct: 704 YV 705
>gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional.
Length = 481
Score = 33.4 bits (76), Expect = 0.26
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 305 GAEIETLVCSTPEISIDVLKQVTFYKDE 332
G E+E LV S PE + +L+ V FYK+E
Sbjct: 175 GPEVEKLVASLPEGGVLLLENVRFYKEE 202
>gnl|CDD|225207 COG2326, COG2326, Uncharacterized conserved protein [Function
unknown].
Length = 270
Score = 32.7 bits (75), Expect = 0.30
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 13/57 (22%)
Query: 238 MPFSTASSSNQFYVHLNPFENDITESNIRQYVVLVLQFRLH--------EFDERIHY 286
M F T +F + FE + ES I +++F L F ER +
Sbjct: 151 MGFCTPKQYKRFLREIPEFERMLVESGII-----LVKFWLSISREEQLERFLERRND 202
Score = 29.2 bits (66), Expect = 3.7
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 130 MPFSTASSSNQFYVHLNPFENDITESNIR 158
M F T +F + FE + ES I
Sbjct: 151 MGFCTPKQYKRFLREIPEFERMLVESGII 179
>gnl|CDD|233228 TIGR00998, 8a0101, efflux pump membrane protein (multidrug
resistance protein A). [Transport and binding proteins,
Other].
Length = 334
Score = 30.5 bits (69), Expect = 2.0
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 121 PGEEVNALQMPFSTASSSNQFYVHLNPFENDITESNIRQYVVLPTTRYSKSCAFQGILLG 180
G+ V+ Q P + Q YV N E + I Q V + + Y F+G + G
Sbjct: 222 VGQVVSPGQ-PLMAVVPAEQMYVEANFKETQLKNVRIGQPVTIRSDLYGSDVVFEGKVTG 280
Query: 181 IAIRTGHYLNL 191
I++ TG +L
Sbjct: 281 ISMGTGSAFSL 291
>gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase.
Length = 401
Score = 29.6 bits (66), Expect = 3.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 305 GAEIETLVCSTPEISIDVLKQVTFYKDE 332
G E+E LV PE + +L+ V FYK+E
Sbjct: 100 GEEVEKLVAELPEGGVLLLENVRFYKEE 127
>gnl|CDD|236859 PRK11143, glpQ, glycerophosphodiester phosphodiesterase;
Provisional.
Length = 355
Score = 29.3 bits (66), Expect = 4.4
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 16/60 (26%)
Query: 275 FRLHEFDERIHYVRK---------GLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQ 325
FR+H F+E I +++ G+Y I P H G +I V ++VLK+
Sbjct: 139 FRVHTFEEEIEFIQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKV-------LEVLKK 191
>gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed.
Length = 687
Score = 29.1 bits (66), Expect = 5.7
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 419 KLVEAIHLSKAINTDDNILAEYLEGNESP 447
KL+EA DD +L YLEG E
Sbjct: 212 KLIEA-----LAEFDDELLELYLEGEELS 235
>gnl|CDD|223047 PHA03332, PHA03332, membrane glycoprotein; Provisional.
Length = 1328
Score = 28.8 bits (64), Expect = 7.5
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 95 GDILSLHDLMEIDQNFITVLSNMTQM---PGEEVNALQMPFSTASSSNQFYVHLNPFEND 151
G + L D +++ F+ V +N + E ++ +Y LN N
Sbjct: 937 GRVSDLED--QVNLRFLAVATNFNTLATQLKELGTTTNERIEEVMAAALYYQQLNSLTNQ 994
Query: 152 ITESNIR 158
+T+S +
Sbjct: 995 VTQSASK 1001
Score = 28.8 bits (64), Expect = 7.5
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 203 GDILSLHDLMEIDQNFITVLSNMTQM---PGEEVNALQMPFSTASSSNQFYVHLNPFEND 259
G + L D +++ F+ V +N + E ++ +Y LN N
Sbjct: 937 GRVSDLED--QVNLRFLAVATNFNTLATQLKELGTTTNERIEEVMAAALYYQQLNSLTNQ 994
Query: 260 ITESNIR 266
+T+S +
Sbjct: 995 VTQSASK 1001
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.404
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,723,573
Number of extensions: 2351974
Number of successful extensions: 1993
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1977
Number of HSP's successfully gapped: 24
Length of query: 458
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 358
Effective length of database: 6,502,202
Effective search space: 2327788316
Effective search space used: 2327788316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)