RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16438
         (458 letters)



>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 350

 Score =  157 bits (398), Expect = 1e-44
 Identities = 64/261 (24%), Positives = 118/261 (45%), Gaps = 12/261 (4%)

Query: 174 FQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEV 233
             GI+LG+AI     L++     ++  L G   +  DL +        L ++ +  G   
Sbjct: 95  LIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVE 154

Query: 234 NALQMPFSTASSS---NQFYVHLNPFENDI--TESNIRQYVVLVLQFRLHE-FDERIHYV 287
           + + + F  + +    N     L    + I  T  N +++V L   + L++  +++    
Sbjct: 155 DDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAF 214

Query: 288 RKGLYQVIP-VPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEV 346
           R+G + V    PL +LF   EIE L+C +  +    L++ T Y       +  I  FWE+
Sbjct: 215 RRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEI 274

Query: 347 LEEMSNQDRVLFIRFVSGRSRLAKSAREFRGLKFEIQFLDRDCDPDTLFPESSTCFFLLR 406
           +   +++ + LF++F +G  R          LK  I    ++       P S TCF +L 
Sbjct: 275 VHSFTDEQKRLFLQFTTGTDRA--PVGGLGKLKMIIA---KNGPDTERLPTSHTCFNVLL 329

Query: 407 LPRYTNKDTLKHKLVEAIHLS 427
           LP Y++K+ LK +L++AI  +
Sbjct: 330 LPEYSSKEKLKERLLKAITYA 350



 Score = 62.5 bits (151), Expect = 3e-11
 Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 18/168 (10%)

Query: 1   ESVDDAGGGYNECLSELCEELRDNSLLKVLIPTPNSNDENGSNRDKFILNPDPFAAAGSN 60
           E   D GG   E    + EE+ +  +  +     ++     +                  
Sbjct: 43  EQGVDEGGVSKEFFQLVVEEIFNPDI-GMFTYDESTKLFWFNPSSF------------ET 89

Query: 61  DKLFFFLGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQM 120
           +  F  +GI+LG+AI     L++     ++  L G   +  DL +        L ++ + 
Sbjct: 90  EGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEY 149

Query: 121 PGEEVNALQMPFSTASSS---NQFYVHLNPFENDI--TESNIRQYVVL 163
            G   + + + F  + +    N     L    + I  T  N +++V L
Sbjct: 150 EGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNL 197


>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 374

 Score =  152 bits (385), Expect = 1e-42
 Identities = 70/258 (27%), Positives = 115/258 (44%), Gaps = 8/258 (3%)

Query: 174 FQGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQMPGEEV 233
           F G  + +A+  G +++   + P +  +    L++ DL  ID  F   L  +     EE 
Sbjct: 116 FIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEE- 174

Query: 234 NALQMPFSTASSSNQFYVHLNPFEN----DITESNIRQYVVLVLQFRLH-EFDERIHYVR 288
             L+M FS            +         +TE N  +Y+ L+ ++R      E+     
Sbjct: 175 CGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFL 234

Query: 289 KGLYQVIPVPLLHLFSGAEIETLVCSTPEISIDVLKQVTFYKDEMNVTTPQIIWFWEVLE 348
            G  +V+P+  L  F   E+E ++C   E+ +   ++ T Y+      + QIIWFW+ ++
Sbjct: 235 DGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRH-YTRNSKQIIWFWQFVK 293

Query: 349 EMSNQDRVLFIRFVSGRSRL-AKSAREFRGLKFEIQFLDRDCDPDTLFPESSTCFFLLRL 407
           E  N+ R+  ++FV+G  RL      E  G     +F       DT  P S TCF  L L
Sbjct: 294 ETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDL 353

Query: 408 PRYTNKDTLKHKLVEAIH 425
           P Y + + LK KL+ AI 
Sbjct: 354 PPYKSYEQLKEKLLFAIE 371



 Score = 64.0 bits (155), Expect = 9e-12
 Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 14/167 (8%)

Query: 1   ESVDDAGGGYNECLSELCEELRDNSLLKVLIPTPNSNDENGSNRDKFILNPDPFAAAGSN 60
           E   D GG   E    L  E+ +        P     +  G N     +NP        +
Sbjct: 60  EEGLDYGGLAREWFFLLSHEVLN--------PMYCLFEYAGKNNYCLQINPASTINP-DH 110

Query: 61  DKLFFFLGILLGIAIRTGHYLNLFLAEPIWTLLSGDILSLHDLMEIDQNFITVLSNMTQM 120
              F F+G  + +A+  G +++   + P +  +    L++ DL  ID  F   L  +   
Sbjct: 111 LSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDN 170

Query: 121 PGEEVNALQMPFSTASSSNQFYVHLNPFEN----DITESNIRQYVVL 163
             EE   L+M FS            +         +TE N  +Y+ L
Sbjct: 171 NIEE-CGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGL 216


>d2guma1 e.76.1.1 (A:111-725) Glycoprotein B {Human herpesvirus 1
           [TaxId: 10298]}
          Length = 615

 Score = 27.0 bits (60), Expect = 6.0
 Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 95  GDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMP---FSTASSSNQFYVHLNPFEND 151
           GD++++   + +  + + V ++M ++          P   F            L    N+
Sbjct: 455 GDVMAVSTCVPVAADNVIVQNSM-RISSRPGACYSRPLVSFRYEDQGPLVEGQLGE-NNE 512

Query: 152 I 152
           +
Sbjct: 513 L 513



 Score = 27.0 bits (60), Expect = 6.0
 Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 203 GDILSLHDLMEIDQNFITVLSNMTQMPGEEVNALQMP---FSTASSSNQFYVHLNPFEND 259
           GD++++   + +  + + V ++M ++          P   F            L    N+
Sbjct: 455 GDVMAVSTCVPVAADNVIVQNSM-RISSRPGACYSRPLVSFRYEDQGPLVEGQLGE-NNE 512

Query: 260 I 260
           +
Sbjct: 513 L 513


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,697,257
Number of extensions: 80266
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 8
Length of query: 458
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 370
Effective length of database: 1,199,356
Effective search space: 443761720
Effective search space used: 443761720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)