Diaphorina citri psyllid: psy1643

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960--
MAKKNKKGGKNTNNSAPGAASTSQCSGGSAKPANQAGPSKQNVPANQAGPSKQNVPVNQGGAAKQNIQGSSSKQNVSANQAGPSKQNGPVKQTGASKQNGPVKQTSKETPRSRRKPSSLPLQKEVEAIRLRRRVKMKPLKNTQCSIHLKHLPAPKSTHAPAEFRLKCILLFKQEYPMFYHDNVKTPPVNFYYKFSTTKDRKAPAEMAIFNCVDQLVAQDKKDTILTTITSEGGEQNFIMFQLKYLIKCLIVKVLDNSNPLLINYDIVLYVLAKCLQLVQQDPKAKLPSTTIIEFRTKVLELAVDRVAGQNSERFLMFVLYMLNFSPKSLRPDAVRKQLQKWYMGKESDQLVVLVAKCSVYQGLSHANVLKLIHFDVFHQSPDKKLALYAIAFGFAYVSHRLISGKFLATPRVPPFVTSDDCFDKASDKVKTIVKDVAVVRCNTSHQKVVAAAVKTHSLGIESVCPKFAKSFKVNTACLEGMTQRGLLQSMHRLRKDNVLSSEDHAIVDESTTCGTYVKQLGASPVTEPPLHPAEVLAAYAEYVLAPVTKMASFQKKAVKPPPSEGGGGDQAQEKSEDETPVLTAKAPEPAIVSALQELYKSSFSNLKTHDSLKISVCLDLQPRFESQPCRDYRPLSGSHVAVLVLESLLRMVDYKMDNIRLVGFKDAKVRPIVRLKTHNCDDNLEGLDDLVDELATVKLEDAPEAEKEEESGKDSADSIIKNYEKIWRYYKRQIPKARGITIHKLLSWSIKQMWHPDVYVVICSQENLSLYKTNVIFAEYMEKTKRKNTNQENLSLYKTNVIFAEYMEKTKRKNTNSSHLKYMPKLKAKTPIQQLLSSAEQADNFCNSVGILQQTAIPSKFSGFDRGGSQTPQQQTQQEDYAHLFATLISRCARDIDALIESLPNEDSTTELQLASLRKLEQDNQGAAERLEDTVRRGELLLEQIQAALTDIAQSQLETNGV
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccHHccHHHHHHHccccHHHHEEcccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccHHHHHHHHccccHHHHHHHHHccccccccccccccHHHcccccHHHHHHccccccccccccHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccCEEEEECcccccccccccccccccccHHHHHHHHHHHHHHHHCCcccEEEEECcccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccEEEcccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
*************************************************************************************************************************************************************HAPAEFRLKCILLFKQEYPMFYHDNVKTPPVNFYYKFSTTKDRKAPAEMAIFNCVDQLVAQDKKDTILTTITSEGGEQNFIMFQLKYLIKCLIVKVLDNSNPLLINYDIVLYVLAKCLQLVQQDPKAKLPSTTIIEFRTKVLELAVDRVAGQNSERFLMFVLYMLNFSPKSLRPDAVRKQLQKWYMGKESDQLVVLVAKCSVYQGLSHANVLKLIHFDVFHQSPDKKLALYAIAFGFAYVSHRLISGKFLATPRVPPFVTSDDCFDKASDKVKTIVKDVAVVRCNTSHQKVVAAAVKTHSLGIESVCPKFAKSFKVNTACLEGMTQRGLLQSMHRLRKDNVLSSEDHAIVDESTTCGTYVKQLGASPVTEPPLHPAEVLAAYAEYVLAPVTKMASF*******************************KAPEPAIVSALQELYKSSFSNLKTHDSLKISVCLDLQPRFESQPCRDYRPLSGSHVAVLVLESLLRMVDYKMDNIRLVGFKDAKVRPIVRLKTHNCDDNLEGLDDLVDELATV*********************IIKNYEKIWRYYKRQIPKARGITIHKLLSWSIKQMWHPDVYVVICSQENLSLYKTNVIFAEYMEKT*******ENLSLYKTNVIFAEYM**************YMPKLKAKTPIQQLLSSAEQADNFCNSVGILQQTAIPSKF*******************YAHLFATLISRCARDIDALIES****************************LEDTVRRGELLLEQIQAALTDIAQSQLE****
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MAKKNKKGGKNTNNSAPGAASTSQCSGGSAKPANQAGPSKQNVPANQAGPSKQNVPVNQGGAAKQNIQGSSSKQNVSANQAGPSKQNGPVKQTGASKQNGPVKQTSKETPRSRRKPSSLPLQKEVEAIRLRRRVKMKPLKNTQCSIHLKHLPAPKSTHAPAEFRLKCILLFKQEYPMFYHDNVKTPPVNFYYKFSTTKDRKAPAEMAIFNCVDQLVAQDKKDTILTTITSEGGEQNFIMFQLKYLIKCLIVKVLDNSNPLLINYDIVLYVLAKCLQLVQQDPKAKLPSTTIIEFRTKVLELAVDRVAGQNSERFLMFVLYMLNFSPKSLRPDAVRKQLQKWYMGKESDQLVVLVAKCSVYQGLSHANVLKLIHFDVFHQSPDKKLALYAIAFGFAYVSHRLISGKFLATPRVPPFVTSDDCFDKASDKVKTIVKDVAVVRCNTSHQKVVAAAVKTHSLGIESVCPKFAKSFKVNTACLEGMTQRGLLQSMHRLRKDNVLSSEDHAIVDESTTCGTYVKQLGASPVTEPPLHPAEVLAAYAEYVLAPVTKMASFQKKAVKPPPSEGGGGDQAQEKSEDETPVLTAKAPEPAIVSALQELYKSSFSNLKTHDSLKISVCLDLQPRFESQPCRDYRPLSGSHVAVLVLESLLRMVDYKMDNIRLVGFKDAKVRPIVRLKTHNCDDNLEGLDDLVDELATVKLEDAPEAEKEEESGKDSADSIIKNYEKIWRYYKRQIPKARGITIHKLLSWSIKQMWHPDVYVVICSQENLSLYKTNVIFAEYMEKTKRKNTNQENLSLYKTNVIFAEYMEKTKRKNTNSSHLKYMPKLKAKTPIQQLLSSAEQADNFCNSVGILQQTAIPSKFSGFDRGGSQTPQQQTQQEDYAHLFATLISRCARDIDALIESLPNEDSTTELQLASxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLTDIAQSQLETNGV

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Mediator of RNA polymerase II transcription subunit 21 Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.confidentQ5RE46
Mediator of RNA polymerase II transcription subunit 21 Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.confidentQ7ZTI5
Mediator of RNA polymerase II transcription subunit 21 Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Required for activated transcription of the MtnA, MtnB and MtnD genes.confidentQ9W5P1

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0016592 [CC]mediator complexprobableGO:0043234, GO:0044446, GO:0032991, GO:0005575, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0005654, GO:0070013, GO:0043229, GO:0044428, GO:0031974, GO:0044424, GO:0044451, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0003713 [MF]transcription coactivator activityprobableGO:0003674, GO:0003712, GO:0000989, GO:0000988
GO:0045944 [BP]positive regulation of transcription from RNA polymerase II promoterprobableGO:0009893, GO:0019222, GO:0031328, GO:0031326, GO:0031325, GO:2001141, GO:0031323, GO:0010628, GO:0050789, GO:0080090, GO:0010604, GO:0051171, GO:0009891, GO:2000112, GO:0019219, GO:0010556, GO:0065007, GO:0048518, GO:0010468, GO:0045935, GO:0060255, GO:0009889, GO:0050794, GO:0008150, GO:0045893, GO:0051173, GO:0051252, GO:0051254, GO:0006355, GO:0010557, GO:0006357, GO:0048522

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1YKE, chain B
Confidence level:very confident
Coverage over the Query: 827-956
View the alignment between query and template
View the model in PyMOL
Template: 2NVO, chain A
Confidence level:confident
Coverage over the Query: 244-414,427-544,566-695
View the alignment between query and template
View the model in PyMOL
Template: 1YVR, chain A
Confidence level:confident
Coverage over the Query: 300-546,583-695
View the alignment between query and template
View the model in PyMOL