BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1644
         (923 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XI4|A Chain A, Clathrin D6 Coat
 pdb|1XI4|B Chain B, Clathrin D6 Coat
 pdb|1XI4|C Chain C, Clathrin D6 Coat
 pdb|1XI4|D Chain D, Clathrin D6 Coat
 pdb|1XI4|E Chain E, Clathrin D6 Coat
 pdb|1XI4|F Chain F, Clathrin D6 Coat
 pdb|1XI4|G Chain G, Clathrin D6 Coat
 pdb|1XI4|H Chain H, Clathrin D6 Coat
 pdb|1XI4|I Chain I, Clathrin D6 Coat
 pdb|1XI5|A Chain A, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|B Chain B, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|C Chain C, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|D Chain D, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|E Chain E, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|F Chain F, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|G Chain G, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|H Chain H, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|I Chain I, Clathrin D6 Coat With Auxilin J-Domain
 pdb|3IYV|A Chain A, Clathrin D6 Coat As Full-Length Triskelions
 pdb|3IYV|B Chain B, Clathrin D6 Coat As Full-Length Triskelions
 pdb|3IYV|C Chain C, Clathrin D6 Coat As Full-Length Triskelions
 pdb|3IYV|D Chain D, Clathrin D6 Coat As Full-Length Triskelions
 pdb|3IYV|E Chain E, Clathrin D6 Coat As Full-Length Triskelions
 pdb|3IYV|F Chain F, Clathrin D6 Coat As Full-Length Triskelions
 pdb|3IYV|G Chain G, Clathrin D6 Coat As Full-Length Triskelions
 pdb|3IYV|H Chain H, Clathrin D6 Coat As Full-Length Triskelions
 pdb|3IYV|I Chain I, Clathrin D6 Coat As Full-Length Triskelions
          Length = 1630

 Score =  308 bits (790), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 150/204 (73%), Positives = 165/204 (80%), Gaps = 10/204 (4%)

Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
           L N+GIN  ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 15  LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 74

Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
           PASKVIALK          A KTLQIFNIEMKSKMKAH MTDDV FWKWIS NT+ALVT+
Sbjct: 75  PASKVIALK----------AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD 124

Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
            +VYHWSMEG+S P KMFDRHS+L GCQIINYRTD KQ WLLL GISA  NRVVGAMQLY
Sbjct: 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184

Query: 390 SVERKCSQPIEEKKSRVAANAPKG 413
           SV+RK SQPIE   +  A    +G
Sbjct: 185 SVDRKVSQPIEGHAASFAQFKMEG 208



 Score =  222 bits (566), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 108/126 (85%)

Query: 1   HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA 60
           HAASFA FK EGN E STLFCFAVR  AGGKLHIIEVGTPP GN P  KKAVDVFFPPEA
Sbjct: 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 256

Query: 61  ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGII 120
            NDFPVAMQ+S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GII
Sbjct: 257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 316

Query: 121 GLTNVG 126
           G+   G
Sbjct: 317 GVNRKG 322



 Score =  204 bits (518), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 94/101 (93%), Positives = 99/101 (98%)

Query: 526 QSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKE 585
           +S+EGLFYFLGSIVN+SQD +VHFKYIQAACKTGQIKEVERICRESNCY+ ERVKNFLKE
Sbjct: 706 KSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKE 765

Query: 586 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK 626
           AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK
Sbjct: 766 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK 806



 Score =  203 bits (517), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 94/120 (78%), Positives = 106/120 (88%)

Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
           ++S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GIIGVNRKGQV
Sbjct: 265 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324

Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAA 848
           LSV V+E+NIIPYI   LQNPDLALR+AVRNNLAGAE+LF RKFN LF  G YSEAAK A
Sbjct: 325 LSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVA 384



 Score =  196 bits (497), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 106/197 (53%), Positives = 124/197 (62%), Gaps = 47/197 (23%)

Query: 377 AVSNRVVGAMQLYSVERKC--SQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQT 434
           AV N + GA +L++ +     +Q    + ++VAANAPKGILRTP TI +FQ VP   GQT
Sbjct: 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQT 411

Query: 435 SPLLQYFGILLDHGKLNKHESLELCRPVLAQ----------------------------- 465
           SPLLQYFGILLD G+LNK+ESLELCRPVL Q                             
Sbjct: 412 SPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVD 471

Query: 466 ----------------VIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVG 509
                           VIQ FAETGQ QKIVLYAKKVGY+PD++FLLRNVMR++PDQG  
Sbjct: 472 PTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQ 531

Query: 510 FAQMLVQDDEPLADINQ 526
           FAQMLVQD+EPLADI Q
Sbjct: 532 FAQMLVQDEEPLADITQ 548



 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 68/74 (91%), Gaps = 5/74 (6%)

Query: 846 KAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIV-----FVHDLVLYLY 900
           +AACKTGQIKEVERICRESNCY+ ERVKNFLKEAKLTDQLPLIIV     FVHDLVLYLY
Sbjct: 733 QAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLY 792

Query: 901 RNNLQKYIEIYVQK 914
           RNNLQKYIEIYVQK
Sbjct: 793 RNNLQKYIEIYVQK 806



 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/131 (52%), Positives = 88/131 (67%), Gaps = 1/131 (0%)

Query: 120 IGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAI 179
           + L N+GIN  ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAI
Sbjct: 13  LQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAI 72

Query: 180 MNPASKVIALK-GKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREK 238
           MNPASKVIALK GK     N   + K + + +T+       +S NT+ + +D  +     
Sbjct: 73  MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSM 132

Query: 239 IAESAQVVIID 249
             ES  V + D
Sbjct: 133 EGESQPVKMFD 143



 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 26/26 (100%)

Query: 706 FVHDLVLYLYRNNLQKYIEIYVQKVS 731
           FVHDLVLYLYRNNLQKYIEIYVQKV+
Sbjct: 783 FVHDLVLYLYRNNLQKYIEIYVQKVN 808



 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/25 (96%), Positives = 25/25 (100%)

Query: 673 FVHDLVLYLYRNNLQKYIEIYVQKI 697
           FVHDLVLYLYRNNLQKYIEIYVQK+
Sbjct: 783 FVHDLVLYLYRNNLQKYIEIYVQKV 807



 Score = 42.4 bits (98), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 20/127 (15%)

Query: 624 VQKGRXXXXXXXXXXXXXXXXXXXGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLYLYR 683
           +Q+GR                   GDLVK  DPTLALSVYLRAN+         V+  + 
Sbjct: 440 LQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNK------VIQCFA 493

Query: 684 NNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLYRNNL-------QKYIEIYVQKVSAKYDV 736
              Q      VQKI +  K+  +  D + +L RN +       Q++ ++ VQ      D+
Sbjct: 494 ETGQ------VQKIVLYAKKVGYTPDWI-FLLRNVMRISPDQGQQFAQMLVQDEEPLADI 546

Query: 737 VYLITKF 743
             ++  F
Sbjct: 547 TQIVDVF 553


>pdb|1BPO|A Chain A, Clathrin Heavy-Chain Terminal Domain And Linker
 pdb|1BPO|B Chain B, Clathrin Heavy-Chain Terminal Domain And Linker
 pdb|1BPO|C Chain C, Clathrin Heavy-Chain Terminal Domain And Linker
          Length = 494

 Score =  308 bits (788), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 149/198 (75%), Positives = 163/198 (82%), Gaps = 10/198 (5%)

Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
           L N+GIN  ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 15  LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 74

Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
           PASKVIALK          A KTLQIFNIEMKSKMKAH MTDDV FWKWIS NT+ALVT+
Sbjct: 75  PASKVIALK----------AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD 124

Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
            +VYHWSMEG+S P KMFDRHS+L GCQIINYRTD KQ WLLL GISA  NRVVGAMQLY
Sbjct: 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184

Query: 390 SVERKCSQPIEEKKSRVA 407
           SV+RK SQPIE   +  A
Sbjct: 185 SVDRKVSQPIEGHAASFA 202



 Score =  219 bits (559), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 108/126 (85%)

Query: 1   HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA 60
           HAASFA FK EGN E STLFCFAVR  AGGKLHIIEVGTPP GN P  KKAVDVFFPPEA
Sbjct: 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 256

Query: 61  ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGII 120
            NDFPVAMQ+S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GII
Sbjct: 257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 316

Query: 121 GLTNVG 126
           G+   G
Sbjct: 317 GVNRKG 322



 Score =  203 bits (517), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 94/121 (77%), Positives = 106/121 (87%)

Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
           ++S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GIIGVNRKGQV
Sbjct: 265 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324

Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAA 848
           LSV V+E+NIIPYI   LQNPDLALR+AVRNNLAGAE+LF RKFN LF  G YSEAAK A
Sbjct: 325 LSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVA 384

Query: 849 C 849
            
Sbjct: 385 A 385



 Score =  125 bits (315), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 69/129 (53%), Positives = 87/129 (67%), Gaps = 1/129 (0%)

Query: 122 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 181
           L N+GIN  ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 15  LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 74

Query: 182 PASKVIALK-GKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIA 240
           PASKVIALK GK     N   + K + + +T+       +S NT+ + +D  +       
Sbjct: 75  PASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 134

Query: 241 ESAQVVIID 249
           ES  V + D
Sbjct: 135 ESQPVKMFD 143



 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 68/91 (74%), Gaps = 2/91 (2%)

Query: 377 AVSNRVVGAMQLYSVERKC--SQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQT 434
           AV N + GA +L++ +     +Q    + ++VAANAPKGILRTP TI +FQ VP   GQT
Sbjct: 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQT 411

Query: 435 SPLLQYFGILLDHGKLNKHESLELCRPVLAQ 465
           SPLLQYFGILLD G+LNK+ESLELCRPVL Q
Sbjct: 412 SPLLQYFGILLDQGQLNKYESLELCRPVLQQ 442



 Score = 40.8 bits (94), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 24/45 (53%)

Query: 624 VQKGRXXXXXXXXXXXXXXXXXXXGDLVKQSDPTLALSVYLRANI 668
           +Q+GR                   GDLVK  DPTLALSVYLRAN+
Sbjct: 440 LQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANV 484


>pdb|1UTC|A Chain A, Clathrin Terminal Domain Complexed With Tlpwdlwtt
 pdb|1UTC|B Chain B, Clathrin Terminal Domain Complexed With Tlpwdlwtt
 pdb|3GC3|B Chain B, Crystal Structure Of Arrestin2s And Clathrin
 pdb|3GD1|I Chain I, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
           Clathrin Binding Domain That Modulates Receptor
           Trafficking
          Length = 363

 Score =  308 bits (788), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 149/198 (75%), Positives = 163/198 (82%), Gaps = 10/198 (5%)

Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
           L N+GIN  ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 15  LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 74

Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
           PASKVIALK          A KTLQIFNIEMKSKMKAH MTDDV FWKWIS NT+ALVT+
Sbjct: 75  PASKVIALK----------AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD 124

Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
            +VYHWSMEG+S P KMFDRHS+L GCQIINYRTD KQ WLLL GISA  NRVVGAMQLY
Sbjct: 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184

Query: 390 SVERKCSQPIEEKKSRVA 407
           SV+RK SQPIE   +  A
Sbjct: 185 SVDRKVSQPIEGHAASFA 202



 Score =  219 bits (559), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 108/126 (85%)

Query: 1   HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA 60
           HAASFA FK EGN E STLFCFAVR  AGGKLHIIEVGTPP GN P  KKAVDVFFPPEA
Sbjct: 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 256

Query: 61  ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGII 120
            NDFPVAMQ+S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GII
Sbjct: 257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 316

Query: 121 GLTNVG 126
           G+   G
Sbjct: 317 GVNRKG 322



 Score =  173 bits (438), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 79/99 (79%), Positives = 91/99 (91%)

Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
           ++S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GIIGVNRKGQV
Sbjct: 265 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324

Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDL 827
           LSV V+E+NIIPYI   LQNPDLALR+AVRNNLAGAE+L
Sbjct: 325 LSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEEL 363



 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/129 (53%), Positives = 87/129 (67%), Gaps = 1/129 (0%)

Query: 122 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 181
           L N+GIN  ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 15  LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 74

Query: 182 PASKVIALK-GKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIA 240
           PASKVIALK GK     N   + K + + +T+       +S NT+ + +D  +       
Sbjct: 75  PASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 134

Query: 241 ESAQVVIID 249
           ES  V + D
Sbjct: 135 ESQPVKMFD 143


>pdb|2XZG|A Chain A, Clathrin Terminal Domain Complexed With Pitstop 1
          Length = 365

 Score =  308 bits (788), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 149/198 (75%), Positives = 163/198 (82%), Gaps = 10/198 (5%)

Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
           L N+GIN  ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 16  LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 75

Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
           PASKVIALK          A KTLQIFNIEMKSKMKAH MTDDV FWKWIS NT+ALVT+
Sbjct: 76  PASKVIALK----------AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD 125

Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
            +VYHWSMEG+S P KMFDRHS+L GCQIINYRTD KQ WLLL GISA  NRVVGAMQLY
Sbjct: 126 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 185

Query: 390 SVERKCSQPIEEKKSRVA 407
           SV+RK SQPIE   +  A
Sbjct: 186 SVDRKVSQPIEGHAASFA 203



 Score =  219 bits (558), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 108/126 (85%)

Query: 1   HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA 60
           HAASFA FK EGN E STLFCFAVR  AGGKLHIIEVGTPP GN P  KKAVDVFFPPEA
Sbjct: 198 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 257

Query: 61  ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGII 120
            NDFPVAMQ+S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GII
Sbjct: 258 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 317

Query: 121 GLTNVG 126
           G+   G
Sbjct: 318 GVNRKG 323



 Score =  175 bits (444), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 80/100 (80%), Positives = 92/100 (92%)

Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
           ++S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GIIGVNRKGQV
Sbjct: 266 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 325

Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLF 828
           LSV V+E+NIIPYI   LQNPDLALR+AVRNNLAGAE+LF
Sbjct: 326 LSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELF 365



 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/129 (53%), Positives = 87/129 (67%), Gaps = 1/129 (0%)

Query: 122 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 181
           L N+GIN  ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 16  LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 75

Query: 182 PASKVIALK-GKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIA 240
           PASKVIALK GK     N   + K + + +T+       +S NT+ + +D  +       
Sbjct: 76  PASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 135

Query: 241 ESAQVVIID 249
           ES  V + D
Sbjct: 136 ESQPVKMFD 144


>pdb|4G55|A Chain A, Clathrin Terminal Domain Complexed With Pitstop 2
          Length = 369

 Score =  307 bits (787), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 149/198 (75%), Positives = 163/198 (82%), Gaps = 10/198 (5%)

Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
           L N+GIN  ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 20  LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 79

Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
           PASKVIALK          A KTLQIFNIEMKSKMKAH MTDDV FWKWIS NT+ALVT+
Sbjct: 80  PASKVIALK----------AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD 129

Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
            +VYHWSMEG+S P KMFDRHS+L GCQIINYRTD KQ WLLL GISA  NRVVGAMQLY
Sbjct: 130 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 189

Query: 390 SVERKCSQPIEEKKSRVA 407
           SV+RK SQPIE   +  A
Sbjct: 190 SVDRKVSQPIEGHAASFA 207



 Score =  219 bits (557), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 108/126 (85%)

Query: 1   HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA 60
           HAASFA FK EGN E STLFCFAVR  AGGKLHIIEVGTPP GN P  KKAVDVFFPPEA
Sbjct: 202 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 261

Query: 61  ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGII 120
            NDFPVAMQ+S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GII
Sbjct: 262 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 321

Query: 121 GLTNVG 126
           G+   G
Sbjct: 322 GVNRKG 327



 Score =  175 bits (444), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 80/100 (80%), Positives = 92/100 (92%)

Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
           ++S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GIIGVNRKGQV
Sbjct: 270 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 329

Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLF 828
           LSV V+E+NIIPYI   LQNPDLALR+AVRNNLAGAE+LF
Sbjct: 330 LSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELF 369



 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/129 (53%), Positives = 87/129 (67%), Gaps = 1/129 (0%)

Query: 122 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 181
           L N+GIN  ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 20  LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 79

Query: 182 PASKVIALK-GKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIA 240
           PASKVIALK GK     N   + K + + +T+       +S NT+ + +D  +       
Sbjct: 80  PASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 139

Query: 241 ESAQVVIID 249
           ES  V + D
Sbjct: 140 ESQPVKMFD 148


>pdb|1C9I|A Chain A, Peptide-In-Groove Interactions Link Target Proteins To The
           B-Propeller Of Clathrin
 pdb|1C9I|B Chain B, Peptide-In-Groove Interactions Link Target Proteins To The
           B-Propeller Of Clathrin
          Length = 359

 Score =  307 bits (787), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/198 (75%), Positives = 163/198 (82%), Gaps = 10/198 (5%)

Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
           L N+GIN  ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 15  LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 74

Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
           PASKVIALK          A KTLQIFNIEMKSKMKAH MTDDV FWKWIS NT+ALVT+
Sbjct: 75  PASKVIALK----------AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD 124

Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
            +VYHWSMEG+S P KMFDRHS+L GCQIINYRTD KQ WLLL GISA  NRVVGAMQLY
Sbjct: 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184

Query: 390 SVERKCSQPIEEKKSRVA 407
           SV+RK SQPIE   +  A
Sbjct: 185 SVDRKVSQPIEGHAASFA 202



 Score =  219 bits (558), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 108/126 (85%)

Query: 1   HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA 60
           HAASFA FK EGN E STLFCFAVR  AGGKLHIIEVGTPP GN P  KKAVDVFFPPEA
Sbjct: 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 256

Query: 61  ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGII 120
            NDFPVAMQ+S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GII
Sbjct: 257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 316

Query: 121 GLTNVG 126
           G+   G
Sbjct: 317 GVNRKG 322



 Score =  167 bits (422), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 76/95 (80%), Positives = 87/95 (91%)

Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
           ++S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GIIGVNRKGQV
Sbjct: 265 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324

Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAG 823
           LSV V+E+NIIPYI   LQNPDLALR+AVRNNLAG
Sbjct: 325 LSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG 359



 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/129 (53%), Positives = 87/129 (67%), Gaps = 1/129 (0%)

Query: 122 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 181
           L N+GIN  ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 15  LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 74

Query: 182 PASKVIALK-GKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIA 240
           PASKVIALK GK     N   + K + + +T+       +S NT+ + +D  +       
Sbjct: 75  PASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 134

Query: 241 ESAQVVIID 249
           ES  V + D
Sbjct: 135 ESQPVKMFD 143


>pdb|1C9L|A Chain A, Peptide-In-Groove Interactions Link Target Proteins To The
           B-Propeller Of Clathrin
 pdb|1C9L|B Chain B, Peptide-In-Groove Interactions Link Target Proteins To The
           B-Propeller Of Clathrin
          Length = 357

 Score =  307 bits (787), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/198 (75%), Positives = 163/198 (82%), Gaps = 10/198 (5%)

Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
           L N+GIN  ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 13  LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 72

Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
           PASKVIALK          A KTLQIFNIEMKSKMKAH MTDDV FWKWIS NT+ALVT+
Sbjct: 73  PASKVIALK----------AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD 122

Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
            +VYHWSMEG+S P KMFDRHS+L GCQIINYRTD KQ WLLL GISA  NRVVGAMQLY
Sbjct: 123 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 182

Query: 390 SVERKCSQPIEEKKSRVA 407
           SV+RK SQPIE   +  A
Sbjct: 183 SVDRKVSQPIEGHAASFA 200



 Score =  219 bits (558), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 108/126 (85%)

Query: 1   HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA 60
           HAASFA FK EGN E STLFCFAVR  AGGKLHIIEVGTPP GN P  KKAVDVFFPPEA
Sbjct: 195 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 254

Query: 61  ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGII 120
            NDFPVAMQ+S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GII
Sbjct: 255 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 314

Query: 121 GLTNVG 126
           G+   G
Sbjct: 315 GVNRKG 320



 Score =  166 bits (421), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 76/95 (80%), Positives = 87/95 (91%)

Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
           ++S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GIIGVNRKGQV
Sbjct: 263 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 322

Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAG 823
           LSV V+E+NIIPYI   LQNPDLALR+AVRNNLAG
Sbjct: 323 LSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG 357



 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/129 (53%), Positives = 87/129 (67%), Gaps = 1/129 (0%)

Query: 122 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 181
           L N+GIN  ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 13  LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 72

Query: 182 PASKVIALK-GKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIA 240
           PASKVIALK GK     N   + K + + +T+       +S NT+ + +D  +       
Sbjct: 73  PASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 132

Query: 241 ESAQVVIID 249
           ES  V + D
Sbjct: 133 ESQPVKMFD 141


>pdb|3OKF|A Chain A, 2.5 Angstrom Resolution Crystal Structure Of
           3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae
 pdb|3OKF|B Chain B, 2.5 Angstrom Resolution Crystal Structure Of
           3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae
          Length = 390

 Score = 31.2 bits (69), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 18/112 (16%)

Query: 37  VGTPPAGNTPLAKKAVDVFFPPEA------------ANDFPVAMQVSAKYDVVYLITKFG 84
           VG   A N PL K  +  F+ P+A            A +F   M    KY ++Y    F 
Sbjct: 167 VGGKTAVNHPLGKNMIGAFYQPKAVVIDTDCLTTLPAREFAAGMAEVIKYGIIYDSAFFD 226

Query: 85  YIH-----VYDIETATCIY-MNRISSDTIFVTAPHEATGGIIGLTNVGINVG 130
           ++      +Y ++     Y + R       V A  E   GI  L N+G   G
Sbjct: 227 WLEAQMEALYALDEQALTYAIARCCQIKAEVVAQDEKESGIRALLNLGHTFG 278


>pdb|3Q15|A Chain A, Crystal Structure Of Raph Complexed With Spo0f
 pdb|3Q15|B Chain B, Crystal Structure Of Raph Complexed With Spo0f
          Length = 378

 Score = 30.4 bits (67), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 556 CKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNN 615
           CK GQ ++  +   E   +   R   F KE  L  Q       D    +HDL+ Y  + N
Sbjct: 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK-IHDLLSYFEKKN 330

Query: 616 LQKYIE 621
           L  YIE
Sbjct: 331 LHAYIE 336


>pdb|1LF6|A Chain A, Crystal Structure Of Bacterial Glucoamylase
 pdb|1LF6|B Chain B, Crystal Structure Of Bacterial Glucoamylase
 pdb|1LF9|A Chain A, Crystal Structure Of Bacterial Glucoamylase Complexed With
           Acarbose
 pdb|1LF9|B Chain B, Crystal Structure Of Bacterial Glucoamylase Complexed With
           Acarbose
          Length = 684

 Score = 30.0 bits (66), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 4/98 (4%)

Query: 788 VLSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKA 847
           V S+ +D  N I  +NG  +    A   + +    G  + +V K      NG  SE    
Sbjct: 9   VSSIKIDRFNNISAVNGPGEEDTWA---SAQKQGVGTANNYVSKVWFTLANGAISEVYYP 65

Query: 848 ACKTGQIKEVERICRESNCYNAERVKNFL-KEAKLTDQ 884
              T  +KE++ I  +   +  +  K+ + K  K TD+
Sbjct: 66  TIDTADVKEIKFIVTDGKSFVPDETKDAISKVEKFTDK 103


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,257,914
Number of Sequences: 62578
Number of extensions: 1087713
Number of successful extensions: 2478
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2429
Number of HSP's gapped (non-prelim): 43
length of query: 923
length of database: 14,973,337
effective HSP length: 108
effective length of query: 815
effective length of database: 8,214,913
effective search space: 6695154095
effective search space used: 6695154095
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)