BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1644
(923 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29742|CLH_DROME Clathrin heavy chain OS=Drosophila melanogaster GN=Chc PE=2 SV=1
Length = 1678
Score = 309 bits (792), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 151/198 (76%), Positives = 164/198 (82%), Gaps = 10/198 (5%)
Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
LTNVGIN S SF+TLTMESDKFICVREK+ ++AQVVIIDMND TNP RRPISADSAIMN
Sbjct: 15 LTNVGINANSFSFSTLTMESDKFICVREKVNDTAQVVIIDMNDATNPTRRPISADSAIMN 74
Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
PASKVIALK A KTLQIFNIEMKSKMKAH M +DVVFWKWIS NTLALVTE
Sbjct: 75 PASKVIALK----------AQKTLQIFNIEMKSKMKAHTMNEDVVFWKWISLNTLALVTE 124
Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
TSV+HWSMEGDS P+KMFDRHS+LNGCQIINYR + Q WLLL+GISA+ +RV GAMQLY
Sbjct: 125 TSVFHWSMEGDSMPQKMFDRHSSLNGCQIINYRCNASQQWLLLVGISALPSRVAGAMQLY 184
Query: 390 SVERKCSQPIEEKKSRVA 407
SVERK SQ IE + A
Sbjct: 185 SVERKVSQAIEGHAASFA 202
Score = 229 bits (584), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 102/126 (80%), Positives = 112/126 (88%)
Query: 1 HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA 60
HAASFA+FK + N EP+TLFCFAVRT GGKLHIIEVG PP GN P AKKAVDVFFPPEA
Sbjct: 197 HAASFATFKIDANKEPTTLFCFAVRTATGGKLHIIEVGAPPNGNQPFAKKAVDVFFPPEA 256
Query: 61 ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGII 120
NDFPVAMQVSAKYD +YLITK+GYIH+YD+ETATCIYMNRIS+DTIFVTAPHEA+GGII
Sbjct: 257 QNDFPVAMQVSAKYDTIYLITKYGYIHLYDMETATCIYMNRISADTIFVTAPHEASGGII 316
Query: 121 GLTNVG 126
G+ G
Sbjct: 317 GVNRKG 322
Score = 210 bits (534), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 97/113 (85%), Positives = 107/113 (94%)
Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
+VSAKYD +YLITK+GYIH+YD+ETATCIYMNRIS+DTIFVTAPHEA+GGIIGVNRKGQV
Sbjct: 265 QVSAKYDTIYLITKYGYIHLYDMETATCIYMNRISADTIFVTAPHEASGGIIGVNRKGQV 324
Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQY 841
LSV+VDE+ IIPYIN LQNPDLALR+AVRNNLAGAEDLFVRKFN LFT GQY
Sbjct: 325 LSVTVDEEQIIPYINTVLQNPDLALRMAVRNNLAGAEDLFVRKFNKLFTAGQY 377
Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/101 (93%), Positives = 97/101 (96%)
Query: 526 QSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKE 585
+SY+GLFYFL SIVN+SQD EVHFKYIQAACKT QIKEVERICRESNCYN ERVKNFLKE
Sbjct: 707 KSYDGLFYFLSSIVNFSQDPEVHFKYIQAACKTNQIKEVERICRESNCYNPERVKNFLKE 766
Query: 586 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK 626
AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK
Sbjct: 767 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK 807
Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/162 (59%), Positives = 103/162 (63%), Gaps = 46/162 (28%)
Query: 411 PKGILRTPQTIVKFQQVPTPAGQTSP-LLQYFGILLDHGKLNKHESLELCRPVLAQ---- 465
PK ILRTPQTI +FQQV TPAG T+P LLQYFGILLD GKLNK ESLELCRPVL Q
Sbjct: 388 PKAILRTPQTIQRFQQVQTPAGSTTPPLLQYFGILLDQGKLNKFESLELCRPVLLQGKKQ 447
Query: 466 -----------------------------------------VIQSFAETGQFQKIVLYAK 484
VIQ FAETGQFQKIVLYAK
Sbjct: 448 LCEKWLKEEKLECSEELGDLVKASDLTLALSIYLRANVPNKVIQCFAETGQFQKIVLYAK 507
Query: 485 KVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQDDEPLADINQ 526
KV Y+PDYVFLLR+VMR NP+QG GFA MLV ++EPLADINQ
Sbjct: 508 KVNYTPDYVFLLRSVMRSNPEQGAGFASMLVAEEEPLADINQ 549
Score = 133 bits (334), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 67/74 (90%), Gaps = 5/74 (6%)
Query: 846 KAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIV-----FVHDLVLYLY 900
+AACKT QIKEVERICRESNCYN ERVKNFLKEAKLTDQLPLIIV FVHDLVLYLY
Sbjct: 734 QAACKTNQIKEVERICRESNCYNPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLY 793
Query: 901 RNNLQKYIEIYVQK 914
RNNLQKYIEIYVQK
Sbjct: 794 RNNLQKYIEIYVQK 807
Score = 123 bits (309), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 65/73 (89%)
Query: 120 IGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAI 179
+ LTNVGIN S SF+TLTMESDKFICVREK+ ++AQVVIIDMND TNP RRPISADSAI
Sbjct: 13 LQLTNVGINANSFSFSTLTMESDKFICVREKVNDTAQVVIIDMNDATNPTRRPISADSAI 72
Query: 180 MNPASKVIALKGK 192
MNPASKVIALK +
Sbjct: 73 MNPASKVIALKAQ 85
Score = 76.6 bits (187), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 626 KGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANI 668
+G+K L EKWLKEEKLECSEELGDLVK SD TLALS+YLRAN+
Sbjct: 443 QGKKQLCEKWLKEEKLECSEELGDLVKASDLTLALSIYLRANV 485
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 618 KYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDL 677
KYI+ + + +E+ +E E + + +K++ T L + + + + FVHDL
Sbjct: 731 KYIQAACKTNQIKEVERICRESNCYNPERVKNFLKEAKLTDQLPLIIVCD--RFDFVHDL 788
Query: 678 VLYLYRNNLQKYIEIYVQKI 697
VLYLYRNNLQKYIEIYVQK+
Sbjct: 789 VLYLYRNNLQKYIEIYVQKV 808
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/26 (96%), Positives = 26/26 (100%)
Query: 706 FVHDLVLYLYRNNLQKYIEIYVQKVS 731
FVHDLVLYLYRNNLQKYIEIYVQKV+
Sbjct: 784 FVHDLVLYLYRNNLQKYIEIYVQKVN 809
>sp|P11442|CLH1_RAT Clathrin heavy chain 1 OS=Rattus norvegicus GN=Cltc PE=1 SV=3
Length = 1675
Score = 308 bits (789), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 150/204 (73%), Positives = 165/204 (80%), Gaps = 10/204 (4%)
Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
L N+GIN ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 15 LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 74
Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
PASKVIALK A KTLQIFNIEMKSKMKAH MTDDV FWKWIS NT+ALVT+
Sbjct: 75 PASKVIALK----------AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD 124
Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
+VYHWSMEG+S P KMFDRHS+L GCQIINYRTD KQ WLLL GISA NRVVGAMQLY
Sbjct: 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184
Query: 390 SVERKCSQPIEEKKSRVAANAPKG 413
SV+RK SQPIE + A +G
Sbjct: 185 SVDRKVSQPIEGHAASFAQFKMEG 208
Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 108/126 (85%)
Query: 1 HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA 60
HAASFA FK EGN E STLFCFAVR AGGKLHIIEVGTPP GN P KKAVDVFFPPEA
Sbjct: 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 256
Query: 61 ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGII 120
NDFPVAMQ+S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GII
Sbjct: 257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 316
Query: 121 GLTNVG 126
G+ G
Sbjct: 317 GVNRKG 322
Score = 203 bits (516), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 94/121 (77%), Positives = 106/121 (87%)
Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
++S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GIIGVNRKGQV
Sbjct: 265 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324
Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAA 848
LSV V+E+NIIPYI LQNPDLALR+AVRNNLAGAE+LF RKFN LF G YSEAAK A
Sbjct: 325 LSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVA 384
Query: 849 C 849
Sbjct: 385 A 385
Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/101 (92%), Positives = 99/101 (98%)
Query: 526 QSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKE 585
+S+EGLFYFLGSIVN+SQD +VHFKYIQAACKTGQIKEVERICRESNCY+ ERVKNFLKE
Sbjct: 706 KSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKE 765
Query: 586 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK 626
AKLTDQLPLIIVCDRFDFVHDLVLYLYRN+LQKYIEIYVQK
Sbjct: 766 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNSLQKYIEIYVQK 806
Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/197 (53%), Positives = 124/197 (62%), Gaps = 47/197 (23%)
Query: 377 AVSNRVVGAMQLYSVERKC--SQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQT 434
AV N + GA +L++ + +Q + ++VAANAPKGILRTP TI +FQ VP GQT
Sbjct: 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQT 411
Query: 435 SPLLQYFGILLDHGKLNKHESLELCRPVLAQ----------------------------- 465
SPLLQYFGILLD G+LNK+ESLELCRPVL Q
Sbjct: 412 SPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVD 471
Query: 466 ----------------VIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVG 509
VIQ FAETGQ QKIVLYAKKVGY+PD++FLLRNVMR++PDQG
Sbjct: 472 PTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQ 531
Query: 510 FAQMLVQDDEPLADINQ 526
FAQMLVQD+EPLADI Q
Sbjct: 532 FAQMLVQDEEPLADITQ 548
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/74 (87%), Positives = 68/74 (91%), Gaps = 5/74 (6%)
Query: 846 KAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIV-----FVHDLVLYLY 900
+AACKTGQIKEVERICRESNCY+ ERVKNFLKEAKLTDQLPLIIV FVHDLVLYLY
Sbjct: 733 QAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLY 792
Query: 901 RNNLQKYIEIYVQK 914
RN+LQKYIEIYVQK
Sbjct: 793 RNSLQKYIEIYVQK 806
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/131 (52%), Positives = 88/131 (67%), Gaps = 1/131 (0%)
Query: 120 IGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAI 179
+ L N+GIN ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAI
Sbjct: 13 LQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAI 72
Query: 180 MNPASKVIALK-GKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREK 238
MNPASKVIALK GK N + K + + +T+ +S NT+ + +D +
Sbjct: 73 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSM 132
Query: 239 IAESAQVVIID 249
ES V + D
Sbjct: 133 EGESQPVKMFD 143
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 73/127 (57%), Gaps = 20/127 (15%)
Query: 624 VQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLYLYR 683
+Q+GRK LLEKWLKE+KLECSEELGDLVK DPTLALSVYLRAN+ V+ +
Sbjct: 440 LQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNK------VIQCFA 493
Query: 684 NNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLYRNNL-------QKYIEIYVQKVSAKYDV 736
Q VQKI + K+ + D + +L RN + Q++ ++ VQ D+
Sbjct: 494 ETGQ------VQKIVLYAKKVGYTPDWI-FLLRNVMRISPDQGQQFAQMLVQDEEPLADI 546
Query: 737 VYLITKF 743
++ F
Sbjct: 547 TQIVDVF 553
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 618 KYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDL 677
KYI+ + G+ +E+ +E E + + +K++ T L + + + + FVHDL
Sbjct: 730 KYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD--RFDFVHDL 787
Query: 678 VLYLYRNNLQKYIEIYVQKI 697
VLYLYRN+LQKYIEIYVQK+
Sbjct: 788 VLYLYRNSLQKYIEIYVQKV 807
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/26 (92%), Positives = 26/26 (100%)
Query: 706 FVHDLVLYLYRNNLQKYIEIYVQKVS 731
FVHDLVLYLYRN+LQKYIEIYVQKV+
Sbjct: 783 FVHDLVLYLYRNSLQKYIEIYVQKVN 808
>sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5
Length = 1675
Score = 308 bits (789), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 150/204 (73%), Positives = 165/204 (80%), Gaps = 10/204 (4%)
Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
L N+GIN ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 15 LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 74
Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
PASKVIALK A KTLQIFNIEMKSKMKAH MTDDV FWKWIS NT+ALVT+
Sbjct: 75 PASKVIALK----------AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD 124
Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
+VYHWSMEG+S P KMFDRHS+L GCQIINYRTD KQ WLLL GISA NRVVGAMQLY
Sbjct: 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184
Query: 390 SVERKCSQPIEEKKSRVAANAPKG 413
SV+RK SQPIE + A +G
Sbjct: 185 SVDRKVSQPIEGHAASFAQFKMEG 208
Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 108/126 (85%)
Query: 1 HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA 60
HAASFA FK EGN E STLFCFAVR AGGKLHIIEVGTPP GN P KKAVDVFFPPEA
Sbjct: 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 256
Query: 61 ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGII 120
NDFPVAMQ+S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GII
Sbjct: 257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 316
Query: 121 GLTNVG 126
G+ G
Sbjct: 317 GVNRKG 322
Score = 203 bits (517), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 94/101 (93%), Positives = 99/101 (98%)
Query: 526 QSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKE 585
+S+EGLFYFLGSIVN+SQD +VHFKYIQAACKTGQIKEVERICRESNCY+ ERVKNFLKE
Sbjct: 706 KSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKE 765
Query: 586 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK 626
AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK
Sbjct: 766 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK 806
Score = 203 bits (516), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 94/120 (78%), Positives = 106/120 (88%)
Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
++S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GIIGVNRKGQV
Sbjct: 265 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324
Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAA 848
LSV V+E+NIIPYI LQNPDLALR+AVRNNLAGAE+LF RKFN LF G YSEAAK A
Sbjct: 325 LSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVA 384
Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/197 (53%), Positives = 124/197 (62%), Gaps = 47/197 (23%)
Query: 377 AVSNRVVGAMQLYSVERKC--SQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQT 434
AV N + GA +L++ + +Q + ++VAANAPKGILRTP TI +FQ VP GQT
Sbjct: 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQT 411
Query: 435 SPLLQYFGILLDHGKLNKHESLELCRPVLAQ----------------------------- 465
SPLLQYFGILLD G+LNK+ESLELCRPVL Q
Sbjct: 412 SPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVD 471
Query: 466 ----------------VIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVG 509
VIQ FAETGQ QKIVLYAKKVGY+PD++FLLRNVMR++PDQG
Sbjct: 472 PTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQ 531
Query: 510 FAQMLVQDDEPLADINQ 526
FAQMLVQD+EPLADI Q
Sbjct: 532 FAQMLVQDEEPLADITQ 548
Score = 134 bits (336), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 68/74 (91%), Gaps = 5/74 (6%)
Query: 846 KAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIV-----FVHDLVLYLY 900
+AACKTGQIKEVERICRESNCY+ ERVKNFLKEAKLTDQLPLIIV FVHDLVLYLY
Sbjct: 733 QAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLY 792
Query: 901 RNNLQKYIEIYVQK 914
RNNLQKYIEIYVQK
Sbjct: 793 RNNLQKYIEIYVQK 806
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/131 (52%), Positives = 88/131 (67%), Gaps = 1/131 (0%)
Query: 120 IGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAI 179
+ L N+GIN ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAI
Sbjct: 13 LQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAI 72
Query: 180 MNPASKVIALK-GKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREK 238
MNPASKVIALK GK N + K + + +T+ +S NT+ + +D +
Sbjct: 73 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSM 132
Query: 239 IAESAQVVIID 249
ES V + D
Sbjct: 133 EGESQPVKMFD 143
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 73/127 (57%), Gaps = 20/127 (15%)
Query: 624 VQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLYLYR 683
+Q+GRK LLEKWLKE+KLECSEELGDLVK DPTLALSVYLRAN+ V+ +
Sbjct: 440 LQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNK------VIQCFA 493
Query: 684 NNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLYRNNL-------QKYIEIYVQKVSAKYDV 736
Q VQKI + K+ + D + +L RN + Q++ ++ VQ D+
Sbjct: 494 ETGQ------VQKIVLYAKKVGYTPDWI-FLLRNVMRISPDQGQQFAQMLVQDEEPLADI 546
Query: 737 VYLITKF 743
++ F
Sbjct: 547 TQIVDVF 553
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 618 KYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDL 677
KYI+ + G+ +E+ +E E + + +K++ T L + + + + FVHDL
Sbjct: 730 KYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD--RFDFVHDL 787
Query: 678 VLYLYRNNLQKYIEIYVQKI 697
VLYLYRNNLQKYIEIYVQK+
Sbjct: 788 VLYLYRNNLQKYIEIYVQKV 807
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/26 (96%), Positives = 26/26 (100%)
Query: 706 FVHDLVLYLYRNNLQKYIEIYVQKVS 731
FVHDLVLYLYRNNLQKYIEIYVQKV+
Sbjct: 783 FVHDLVLYLYRNNLQKYIEIYVQKVN 808
>sp|Q68FD5|CLH1_MOUSE Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=1 SV=3
Length = 1675
Score = 308 bits (788), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 150/204 (73%), Positives = 165/204 (80%), Gaps = 10/204 (4%)
Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
L N+GIN ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 15 LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 74
Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
PASKVIALK A KTLQIFNIEMKSKMKAH MTDDV FWKWIS NT+ALVT+
Sbjct: 75 PASKVIALK----------AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD 124
Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
+VYHWSMEG+S P KMFDRHS+L GCQIINYRTD KQ WLLL GISA NRVVGAMQLY
Sbjct: 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184
Query: 390 SVERKCSQPIEEKKSRVAANAPKG 413
SV+RK SQPIE + A +G
Sbjct: 185 SVDRKVSQPIEGHAASFAQFKMEG 208
Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 108/126 (85%)
Query: 1 HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA 60
HAASFA FK EGN E STLFCFAVR AGGKLHIIEVGTPP GN P KKAVDVFFPPEA
Sbjct: 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 256
Query: 61 ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGII 120
NDFPVAMQ+S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GII
Sbjct: 257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 316
Query: 121 GLTNVG 126
G+ G
Sbjct: 317 GVNRKG 322
Score = 203 bits (517), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 94/101 (93%), Positives = 99/101 (98%)
Query: 526 QSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKE 585
+S+EGLFYFLGSIVN+SQD +VHFKYIQAACKTGQIKEVERICRESNCY+ ERVKNFLKE
Sbjct: 706 KSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKE 765
Query: 586 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK 626
AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK
Sbjct: 766 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK 806
Score = 203 bits (516), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 94/120 (78%), Positives = 106/120 (88%)
Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
++S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GIIGVNRKGQV
Sbjct: 265 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324
Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAA 848
LSV V+E+NIIPYI LQNPDLALR+AVRNNLAGAE+LF RKFN LF G YSEAAK A
Sbjct: 325 LSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVA 384
Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/197 (53%), Positives = 124/197 (62%), Gaps = 47/197 (23%)
Query: 377 AVSNRVVGAMQLYSVERKC--SQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQT 434
AV N + GA +L++ + +Q + ++VAANAPKGILRTP TI +FQ VP GQT
Sbjct: 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQT 411
Query: 435 SPLLQYFGILLDHGKLNKHESLELCRPVLAQ----------------------------- 465
SPLLQYFGILLD G+LNK+ESLELCRPVL Q
Sbjct: 412 SPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVD 471
Query: 466 ----------------VIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVG 509
VIQ FAETGQ QKIVLYAKKVGY+PD++FLLRNVMR++PDQG
Sbjct: 472 PTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQ 531
Query: 510 FAQMLVQDDEPLADINQ 526
FAQMLVQD+EPLADI Q
Sbjct: 532 FAQMLVQDEEPLADITQ 548
Score = 134 bits (336), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 68/74 (91%), Gaps = 5/74 (6%)
Query: 846 KAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIV-----FVHDLVLYLY 900
+AACKTGQIKEVERICRESNCY+ ERVKNFLKEAKLTDQLPLIIV FVHDLVLYLY
Sbjct: 733 QAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLY 792
Query: 901 RNNLQKYIEIYVQK 914
RNNLQKYIEIYVQK
Sbjct: 793 RNNLQKYIEIYVQK 806
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/131 (52%), Positives = 88/131 (67%), Gaps = 1/131 (0%)
Query: 120 IGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAI 179
+ L N+GIN ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAI
Sbjct: 13 LQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAI 72
Query: 180 MNPASKVIALK-GKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREK 238
MNPASKVIALK GK N + K + + +T+ +S NT+ + +D +
Sbjct: 73 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSM 132
Query: 239 IAESAQVVIID 249
ES V + D
Sbjct: 133 EGESQPVKMFD 143
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 73/127 (57%), Gaps = 20/127 (15%)
Query: 624 VQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLYLYR 683
+Q+GRK LLEKWLKE+KLECSEELGDLVK DPTLALSVYLRAN+ V+ +
Sbjct: 440 LQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNK------VIQCFA 493
Query: 684 NNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLYRNNL-------QKYIEIYVQKVSAKYDV 736
Q VQKI + K+ + D + +L RN + Q++ ++ VQ D+
Sbjct: 494 ETGQ------VQKIVLYAKKVGYTPDWI-FLLRNVMRISPDQGQQFAQMLVQDEEPLADI 546
Query: 737 VYLITKF 743
++ F
Sbjct: 547 TQIVDVF 553
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 618 KYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDL 677
KYI+ + G+ +E+ +E E + + +K++ T L + + + + FVHDL
Sbjct: 730 KYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD--RFDFVHDL 787
Query: 678 VLYLYRNNLQKYIEIYVQKI 697
VLYLYRNNLQKYIEIYVQK+
Sbjct: 788 VLYLYRNNLQKYIEIYVQKV 807
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/26 (96%), Positives = 26/26 (100%)
Query: 706 FVHDLVLYLYRNNLQKYIEIYVQKVS 731
FVHDLVLYLYRNNLQKYIEIYVQKV+
Sbjct: 783 FVHDLVLYLYRNNLQKYIEIYVQKVN 808
>sp|P49951|CLH1_BOVIN Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 SV=1
Length = 1675
Score = 308 bits (788), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 150/204 (73%), Positives = 165/204 (80%), Gaps = 10/204 (4%)
Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
L N+GIN ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 15 LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 74
Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
PASKVIALK A KTLQIFNIEMKSKMKAH MTDDV FWKWIS NT+ALVT+
Sbjct: 75 PASKVIALK----------AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD 124
Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
+VYHWSMEG+S P KMFDRHS+L GCQIINYRTD KQ WLLL GISA NRVVGAMQLY
Sbjct: 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184
Query: 390 SVERKCSQPIEEKKSRVAANAPKG 413
SV+RK SQPIE + A +G
Sbjct: 185 SVDRKVSQPIEGHAASFAQFKMEG 208
Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 108/126 (85%)
Query: 1 HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA 60
HAASFA FK EGN E STLFCFAVR AGGKLHIIEVGTPP GN P KKAVDVFFPPEA
Sbjct: 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 256
Query: 61 ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGII 120
NDFPVAMQ+S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GII
Sbjct: 257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 316
Query: 121 GLTNVG 126
G+ G
Sbjct: 317 GVNRKG 322
Score = 203 bits (517), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 94/101 (93%), Positives = 99/101 (98%)
Query: 526 QSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKE 585
+S+EGLFYFLGSIVN+SQD +VHFKYIQAACKTGQIKEVERICRESNCY+ ERVKNFLKE
Sbjct: 706 KSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKE 765
Query: 586 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK 626
AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK
Sbjct: 766 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK 806
Score = 203 bits (516), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 94/120 (78%), Positives = 106/120 (88%)
Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
++S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GIIGVNRKGQV
Sbjct: 265 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324
Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAA 848
LSV V+E+NIIPYI LQNPDLALR+AVRNNLAGAE+LF RKFN LF G YSEAAK A
Sbjct: 325 LSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVA 384
Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/197 (53%), Positives = 124/197 (62%), Gaps = 47/197 (23%)
Query: 377 AVSNRVVGAMQLYSVERKC--SQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQT 434
AV N + GA +L++ + +Q + ++VAANAPKGILRTP TI +FQ VP GQT
Sbjct: 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQT 411
Query: 435 SPLLQYFGILLDHGKLNKHESLELCRPVLAQ----------------------------- 465
SPLLQYFGILLD G+LNK+ESLELCRPVL Q
Sbjct: 412 SPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVD 471
Query: 466 ----------------VIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVG 509
VIQ FAETGQ QKIVLYAKKVGY+PD++FLLRNVMR++PDQG
Sbjct: 472 PTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQ 531
Query: 510 FAQMLVQDDEPLADINQ 526
FAQMLVQD+EPLADI Q
Sbjct: 532 FAQMLVQDEEPLADITQ 548
Score = 134 bits (336), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 68/74 (91%), Gaps = 5/74 (6%)
Query: 846 KAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIV-----FVHDLVLYLY 900
+AACKTGQIKEVERICRESNCY+ ERVKNFLKEAKLTDQLPLIIV FVHDLVLYLY
Sbjct: 733 QAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLY 792
Query: 901 RNNLQKYIEIYVQK 914
RNNLQKYIEIYVQK
Sbjct: 793 RNNLQKYIEIYVQK 806
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/131 (52%), Positives = 88/131 (67%), Gaps = 1/131 (0%)
Query: 120 IGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAI 179
+ L N+GIN ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAI
Sbjct: 13 LQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAI 72
Query: 180 MNPASKVIALK-GKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREK 238
MNPASKVIALK GK N + K + + +T+ +S NT+ + +D +
Sbjct: 73 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSM 132
Query: 239 IAESAQVVIID 249
ES V + D
Sbjct: 133 EGESQPVKMFD 143
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 73/127 (57%), Gaps = 20/127 (15%)
Query: 624 VQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLYLYR 683
+Q+GRK LLEKWLKE+KLECSEELGDLVK DPTLALSVYLRAN+ V+ +
Sbjct: 440 LQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNK------VIQCFA 493
Query: 684 NNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLYRNNL-------QKYIEIYVQKVSAKYDV 736
Q VQKI + K+ + D + +L RN + Q++ ++ VQ D+
Sbjct: 494 ETGQ------VQKIVLYAKKVGYTPDWI-FLLRNVMRISPDQGQQFAQMLVQDEEPLADI 546
Query: 737 VYLITKF 743
++ F
Sbjct: 547 TQIVDVF 553
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 618 KYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDL 677
KYI+ + G+ +E+ +E E + + +K++ T L + + + + FVHDL
Sbjct: 730 KYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD--RFDFVHDL 787
Query: 678 VLYLYRNNLQKYIEIYVQKI 697
VLYLYRNNLQKYIEIYVQK+
Sbjct: 788 VLYLYRNNLQKYIEIYVQKV 807
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/26 (96%), Positives = 26/26 (100%)
Query: 706 FVHDLVLYLYRNNLQKYIEIYVQKVS 731
FVHDLVLYLYRNNLQKYIEIYVQKV+
Sbjct: 783 FVHDLVLYLYRNNLQKYIEIYVQKVN 808
>sp|P53675|CLH2_HUMAN Clathrin heavy chain 2 OS=Homo sapiens GN=CLTCL1 PE=1 SV=2
Length = 1640
Score = 296 bits (759), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 147/225 (65%), Positives = 172/225 (76%), Gaps = 12/225 (5%)
Query: 208 YLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAI 267
+ L N+GIN ++ F+TLTMESDKFIC+REK+ E AQV IIDM+DP PIRRPISA+SAI
Sbjct: 13 FQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVTIIDMSDPMAPIRRPISAESAI 72
Query: 268 MNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALV 327
MNPASKVIALK A KTLQIFNIEMKSKMKAH M ++V+FWKW+S NT+ALV
Sbjct: 73 MNPASKVIALK----------AGKTLQIFNIEMKSKMKAHTMAEEVIFWKWVSVNTVALV 122
Query: 328 TETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQ 387
TET+VYHWSMEGDS P KMFDRH++L GCQ+I+YRTD Q WLLL+GISA NRVVGAMQ
Sbjct: 123 TETAVYHWSMEGDSQPMKMFDRHTSLVGCQVIHYRTDEYQKWLLLVGISAQQNRVVGAMQ 182
Query: 388 LYSVERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAG 432
LYSV+RK SQPIE + A +G + P T+ F V P G
Sbjct: 183 LYSVDRKVSQPIEGHAAAFAEFKMEGNAK-PATLFCF-AVRNPTG 225
Score = 209 bits (532), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 91/126 (72%), Positives = 105/126 (83%)
Query: 1 HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA 60
HAA+FA FK EGN +P+TLFCFAVR P GGKLHIIEVG P AGN P KKAVDVFFPPEA
Sbjct: 197 HAAAFAEFKMEGNAKPATLFCFAVRNPTGGKLHIIEVGQPAAGNQPFVKKAVDVFFPPEA 256
Query: 61 ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGII 120
NDFPVAMQ+ AK+ V+YLITK+GY+H+YD+E+ CI MNRIS+DTIFVTAPH+ T GII
Sbjct: 257 QNDFPVAMQIGAKHGVIYLITKYGYLHLYDLESGVCICMNRISADTIFVTAPHKPTSGII 316
Query: 121 GLTNVG 126
G+ G
Sbjct: 317 GVNKKG 322
Score = 197 bits (500), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 91/101 (90%), Positives = 97/101 (96%)
Query: 526 QSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKE 585
+SY+GLFYFLGSIVN+SQD +VH KYIQAACKTGQIKEVERICRES+CYN ERVKNFLKE
Sbjct: 706 KSYKGLFYFLGSIVNFSQDPDVHLKYIQAACKTGQIKEVERICRESSCYNPERVKNFLKE 765
Query: 586 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK 626
AKLTDQLPLIIVCDRF FVHDLVLYLYRNNLQ+YIEIYVQK
Sbjct: 766 AKLTDQLPLIIVCDRFGFVHDLVLYLYRNNLQRYIEIYVQK 806
Score = 174 bits (440), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 78/113 (69%), Positives = 94/113 (83%)
Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
++ AK+ V+YLITK+GY+H+YD+E+ CI MNRIS+DTIFVTAPH+ T GIIGVN+KGQV
Sbjct: 265 QIGAKHGVIYLITKYGYLHLYDLESGVCICMNRISADTIFVTAPHKPTSGIIGVNKKGQV 324
Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQY 841
LSV V+EDNI+ Y LQNPDL LR+AVR+NLAGAE LFVRKFN LF G Y
Sbjct: 325 LSVCVEEDNIVNYATNVLQNPDLGLRLAVRSNLAGAEKLFVRKFNTLFAQGSY 377
Score = 164 bits (415), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 131/216 (60%), Gaps = 48/216 (22%)
Query: 358 IINYRTDPKQTWLLLIGISAVSNRVVGAMQLY--SVERKCSQPIEEKKSRVAANAPKGIL 415
I+NY T+ Q L + ++ SN + GA +L+ +Q + ++VAA+APKGIL
Sbjct: 334 IVNYATNVLQNPDLGLRLAVRSN-LAGAEKLFVRKFNTLFAQGSYAEAAKVAASAPKGIL 392
Query: 416 RTPQTIVKFQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCRPVLAQ---------- 465
RT +T+ KFQ +P +GQ SPLLQYFGILLD G+LNK ESLELC VL Q
Sbjct: 393 RTRETVQKFQSIPAQSGQASPLLQYFGILLDQGQLNKLESLELCHLVLQQGRKQLLEKWL 452
Query: 466 -----------------------------------VIQSFAETGQFQKIVLYAKKVGYSP 490
VIQ FAETGQFQKIVLYAKKVGY+P
Sbjct: 453 KEDKLECSEELGDLVKTTDPMLALSVYLRANVPSKVIQCFAETGQFQKIVLYAKKVGYTP 512
Query: 491 DYVFLLRNVMRVNPDQGVGFAQMLVQDDEPLADINQ 526
D++FLLR VM+++P+QG+ F++MLVQD+EPLA+I+Q
Sbjct: 513 DWIFLLRGVMKISPEQGLQFSRMLVQDEEPLANISQ 548
Score = 132 bits (333), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 65/74 (87%), Positives = 68/74 (91%), Gaps = 5/74 (6%)
Query: 846 KAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIV-----FVHDLVLYLY 900
+AACKTGQIKEVERICRES+CYN ERVKNFLKEAKLTDQLPLIIV FVHDLVLYLY
Sbjct: 733 QAACKTGQIKEVERICRESSCYNPERVKNFLKEAKLTDQLPLIIVCDRFGFVHDLVLYLY 792
Query: 901 RNNLQKYIEIYVQK 914
RNNLQ+YIEIYVQK
Sbjct: 793 RNNLQRYIEIYVQK 806
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 75/107 (70%), Gaps = 1/107 (0%)
Query: 122 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 181
L N+GIN ++ F+TLTMESDKFIC+REK+ E AQV IIDM+DP PIRRPISA+SAIMN
Sbjct: 15 LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVTIIDMSDPMAPIRRPISAESAIMN 74
Query: 182 PASKVIALK-GKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTM 227
PASKVIALK GK N + K + + + I VS NT+ +
Sbjct: 75 PASKVIALKAGKTLQIFNIEMKSKMKAHTMAEEVIFWKWVSVNTVAL 121
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/47 (78%), Positives = 43/47 (91%)
Query: 622 IYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANI 668
+ +Q+GRK LLEKWLKE+KLECSEELGDLVK +DP LALSVYLRAN+
Sbjct: 438 LVLQQGRKQLLEKWLKEDKLECSEELGDLVKTTDPMLALSVYLRANV 484
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 618 KYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDL 677
KYI+ + G+ +E+ +E E + + +K++ T L + + + + FVHDL
Sbjct: 730 KYIQAACKTGQIKEVERICRESSCYNPERVKNFLKEAKLTDQLPLIIVCD--RFGFVHDL 787
Query: 678 VLYLYRNNLQKYIEIYVQKI 697
VLYLYRNNLQ+YIEIYVQK+
Sbjct: 788 VLYLYRNNLQRYIEIYVQKV 807
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/26 (92%), Positives = 26/26 (100%)
Query: 706 FVHDLVLYLYRNNLQKYIEIYVQKVS 731
FVHDLVLYLYRNNLQ+YIEIYVQKV+
Sbjct: 783 FVHDLVLYLYRNNLQRYIEIYVQKVN 808
>sp|P34574|CLH_CAEEL Probable clathrin heavy chain 1 OS=Caenorhabditis elegans GN=chc-1
PE=3 SV=1
Length = 1681
Score = 245 bits (626), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 117/191 (61%), Positives = 145/191 (75%), Gaps = 10/191 (5%)
Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
L N GI V +++F+ +TMESDK I VRE I + QVVIID+ D NP RRPISADS IM+
Sbjct: 13 LPNAGIRVPNITFSNVTMESDKNIVVREMIGDQQQVVIIDLADTANPTRRPISADSVIMH 72
Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
P +K++ALK + KTLQIFNIE+K+K+KAH +DVV+WKWIS T+ALV++
Sbjct: 73 PTAKILALK----------SGKTLQIFNIELKAKVKAHQNVEDVVYWKWISEKTIALVSD 122
Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
T+VYHWS+EGD+ P KMFDRH +L G QIINYR D + WL+LIGISA +RVVG+MQLY
Sbjct: 123 TAVYHWSIEGDAAPVKMFDRHQSLAGTQIINYRADAENKWLVLIGISAKDSRVVGSMQLY 182
Query: 390 SVERKCSQPIE 400
S ERK SQPIE
Sbjct: 183 STERKVSQPIE 193
Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/102 (85%), Positives = 95/102 (93%)
Query: 525 NQSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLK 584
++SYEGLFYFLGSIVN+SQD EVHFKYIQAA +TGQIKEVERICRES CY+AERVKNFLK
Sbjct: 707 HKSYEGLFYFLGSIVNFSQDPEVHFKYIQAATRTGQIKEVERICRESQCYDAERVKNFLK 766
Query: 585 EAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK 626
EAKL DQLPLIIVCDR + VHDLVLYLYRN LQKYIE++VQK
Sbjct: 767 EAKLNDQLPLIIVCDRHNMVHDLVLYLYRNQLQKYIEVFVQK 808
Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/125 (63%), Positives = 104/125 (83%)
Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
+VSAK ++YL+TK GY+H+YD+E+ T IY NRIS+DT+FVT + ATGGI+G+NRKGQV
Sbjct: 263 QVSAKQGIIYLVTKQGYVHLYDVESGTRIYSNRISTDTVFVTCEYTATGGIMGINRKGQV 322
Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAA 848
LSVS+DE N++P++ LQNPDLAL++AVR +L GAE+LFVRKFNLLF+NGQ+ E+AK A
Sbjct: 323 LSVSIDEANLVPFVTNQLQNPDLALKLAVRCDLPGAEELFVRKFNLLFSNGQFGESAKVA 382
Query: 849 CKTGQ 853
Q
Sbjct: 383 ASAPQ 387
Score = 174 bits (440), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/135 (60%), Positives = 101/135 (74%), Gaps = 1/135 (0%)
Query: 1 HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA 60
HAA F FK +GN PS LFCF+V+T GGKLH+IEVGTP AGNTP KK VDV + +
Sbjct: 195 HAACFVRFKVDGNQNPSNLFCFSVKTDNGGKLHVIEVGTPAAGNTPFQKKNVDVPYTADT 254
Query: 61 ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGII 120
A DFPV+MQVSAK ++YL+TK GY+H+YD+E+ T IY NRIS+DT+FVT + ATGGI+
Sbjct: 255 AGDFPVSMQVSAKQGIIYLVTKQGYVHLYDVESGTRIYSNRISTDTVFVTCEYTATGGIM 314
Query: 121 GLTNVGINVGSVSFN 135
G+ G V SVS +
Sbjct: 315 GINRKG-QVLSVSID 328
Score = 159 bits (402), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 106/174 (60%), Gaps = 49/174 (28%)
Query: 402 KKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCRP 461
+ ++VAA+AP+GILRTP TI KFQQ P+ SPLLQYFGILLD GKLNK+E+LELCRP
Sbjct: 377 ESAKVAASAPQGILRTPATIQKFQQCPSTGPGPSPLLQYFGILLDQGKLNKYETLELCRP 436
Query: 462 VLAQ---------------------------------------------VIQSFAETGQF 476
VLAQ V+QSFAETGQF
Sbjct: 437 VLAQGRKELITKWLNDQKLECCEELGDLIKPHDVNTALSVYLRGNVPHKVVQSFAETGQF 496
Query: 477 QKIVLYAKKVGYSPDYVFLLRNVMR-VNPDQGVGFAQMLV---QDDEPLADINQ 526
KIV+YAK+VG+ PDY+F LR ++R NPD G FAQ+LV ++ EPLAD++Q
Sbjct: 497 DKIVMYAKRVGFQPDYLFQLRQILRNSNPDHGAKFAQLLVSESENGEPLADLSQ 550
Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 64/74 (86%), Gaps = 5/74 (6%)
Query: 846 KAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIV-----FVHDLVLYLY 900
+AA +TGQIKEVERICRES CY+AERVKNFLKEAKL DQLPLIIV VHDLVLYLY
Sbjct: 735 QAATRTGQIKEVERICRESQCYDAERVKNFLKEAKLNDQLPLIIVCDRHNMVHDLVLYLY 794
Query: 901 RNNLQKYIEIYVQK 914
RN LQKYIE++VQK
Sbjct: 795 RNQLQKYIEVFVQK 808
Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 53/72 (73%)
Query: 120 IGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAI 179
+ L N GI V +++F+ +TMESDK I VRE I + QVVIID+ D NP RRPISADS I
Sbjct: 11 LQLPNAGIRVPNITFSNVTMESDKNIVVREMIGDQQQVVIIDLADTANPTRRPISADSVI 70
Query: 180 MNPASKVIALKG 191
M+P +K++ALK
Sbjct: 71 MHPTAKILALKS 82
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%)
Query: 626 KGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANI 668
+GRK L+ KWL ++KLEC EELGDL+K D ALSVYLR N+
Sbjct: 440 QGRKELITKWLNDQKLECCEELGDLIKPHDVNTALSVYLRGNV 482
>sp|Q2QYW2|CLH2_ORYSJ Clathrin heavy chain 2 OS=Oryza sativa subsp. japonica
GN=Os12g0104800 PE=3 SV=1
Length = 1708
Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 157/244 (64%), Gaps = 10/244 (4%)
Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
LT++GI V+F +TMES+K+ICVRE +++ VVI+DM P P+RRPI+ADSA+MN
Sbjct: 16 LTSLGIAPQFVTFTHVTMESEKYICVRETSPQNS-VVIVDMAMPAQPLRRPITADSALMN 74
Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
P ++++ALK + + LQIFNIE K+K+K+H M + VVFWKWI+P L LVT+
Sbjct: 75 PNTRILALKAQIPGTTQDH----LQIFNIEAKTKIKSHQMPEQVVFWKWITPKLLGLVTQ 130
Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVS----NRVVGA 385
TSVYHWS+EGDS P KMFDR + L QIINYR DP + WL+LIGI+ + V G
Sbjct: 131 TSVYHWSIEGDSEPAKMFDRTANLANNQIINYRCDPSEKWLVLIGIAPGAPERPQLVKGN 190
Query: 386 MQLYSVERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYFGILL 445
MQL+SV+++ SQ +E + A+ G P T++ F T AGQ + L +
Sbjct: 191 MQLFSVDQQRSQALEAHAASFASFKVVGN-ENPSTLICFASKTTNAGQITSKLHVIELGA 249
Query: 446 DHGK 449
GK
Sbjct: 250 QPGK 253
Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/130 (53%), Positives = 87/130 (66%), Gaps = 5/130 (3%)
Query: 1 HAASFASFKSEGNPEPSTLFCFAVRTPAGG----KLHIIEVGTPPAGNTPLAKKAVDVFF 56
HAASFASFK GN PSTL CFA +T G KLH+IE+G P G +KK D+FF
Sbjct: 207 HAASFASFKVVGNENPSTLICFASKTTNAGQITSKLHVIELGAQP-GKPGFSKKQADLFF 265
Query: 57 PPEAANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEAT 116
PP+ +DFPVAMQ+S KY ++Y+ITK G + VYD+ETA +Y NRIS D IF+TA A+
Sbjct: 266 PPDFQDDFPVAMQISQKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTAESSAS 325
Query: 117 GGIIGLTNVG 126
GG + G
Sbjct: 326 GGFYAINRRG 335
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/101 (65%), Positives = 82/101 (81%)
Query: 526 QSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKE 585
+SYEGL++FLG+ ++ S+D ++HFKYI+AA +TGQIKEVER+ RESN Y+AE+ KNFL E
Sbjct: 720 KSYEGLYFFLGAYLSSSEDPDIHFKYIEAAARTGQIKEVERVTRESNFYDAEKTKNFLME 779
Query: 586 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK 626
AKL D PLI VCDRF FV DL YLY NN+ +YIE YVQK
Sbjct: 780 AKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQK 820
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 87/125 (69%)
Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
++S KY ++Y+ITK G + VYD+ETA +Y NRIS D IF+TA A+GG +NR+GQV
Sbjct: 278 QISQKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTAESSASGGFYAINRRGQV 337
Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAA 848
L +V++ I+P+++ L N +LA+ +A R NL GAE+L V++F LF +Y EAA+ A
Sbjct: 338 LHATVNDATIVPFVSSQLNNLELAVNLAKRANLPGAENLVVQRFQELFAQTKYKEAAELA 397
Query: 849 CKTGQ 853
++ Q
Sbjct: 398 AESPQ 402
Score = 127 bits (318), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 125/258 (48%), Gaps = 59/258 (22%)
Query: 310 TDDVVFWKWISPNTLALVTETSV----YHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDP 365
T V+ ISP+ + L E+S Y + G H+T+N I+ + +
Sbjct: 302 TAAAVYRNRISPDPIFLTAESSASGGFYAINRRGQVL-------HATVNDATIVPFVSSQ 354
Query: 366 KQTWLLLIGISAVSNRVVGAMQLY--SVERKCSQPIEEKKSRVAANAPKGILRTPQTIVK 423
L + ++ +N + GA L + +Q ++ + +AA +P+G+LRTP T+ K
Sbjct: 355 LNNLELAVNLAKRAN-LPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPDTVAK 413
Query: 424 FQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCRPVLAQ------------------ 465
FQ VP AGQT PLLQYFG LL GKLN +ESLEL R V+ Q
Sbjct: 414 FQSVPVQAGQTPPLLQYFGTLLTRGKLNAYESLELSRLVVNQNKKNLLENWLAEDKLECS 473
Query: 466 ---------------------------VIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRN 498
V+ +FAE +F KI++Y+K+VGY+PDY+FLL+
Sbjct: 474 EELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQT 533
Query: 499 VMRVNPDQGVGFAQMLVQ 516
++R +P V FA M+ Q
Sbjct: 534 ILRTDPQGAVNFALMMSQ 551
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 54/74 (72%), Gaps = 5/74 (6%)
Query: 846 KAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIV-----FVHDLVLYLY 900
+AA +TGQIKEVER+ RESN Y+AE+ KNFL EAKL D PLI V FV DL YLY
Sbjct: 747 EAAARTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLY 806
Query: 901 RNNLQKYIEIYVQK 914
NN+ +YIE YVQK
Sbjct: 807 TNNMLRYIEGYVQK 820
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 120 IGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAI 179
+ LT++GI V+F +TMES+K+ICVRE +++ VVI+DM P P+RRPI+ADSA+
Sbjct: 14 LTLTSLGIAPQFVTFTHVTMESEKYICVRETSPQNS-VVIVDMAMPAQPLRRPITADSAL 72
Query: 180 MNPASKVIALKGK 192
MNP ++++ALK +
Sbjct: 73 MNPNTRILALKAQ 85
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 35/45 (77%)
Query: 622 IYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRA 666
+ V + +K+LLE WL E+KLECSEELGDLVK D LAL +Y++A
Sbjct: 451 LVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKA 495
Score = 37.0 bits (84), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 618 KYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVKQS---DPTLALSVYLRANIKQSRFV 674
KYIE + G+ +E+ +E +E+ + + ++ D ++V R FV
Sbjct: 744 KYIEAAARTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFG-----FV 798
Query: 675 HDLVLYLYRNNLQKYIEIYVQKI 697
DL YLY NN+ +YIE YVQK+
Sbjct: 799 PDLTHYLYTNNMLRYIEGYVQKV 821
Score = 36.6 bits (83), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 706 FVHDLVLYLYRNNLQKYIEIYVQKVS 731
FV DL YLY NN+ +YIE YVQKV+
Sbjct: 797 FVPDLTHYLYTNNMLRYIEGYVQKVN 822
>sp|Q2RBN7|CLH1_ORYSJ Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica
GN=Os11g0104900 PE=3 SV=1
Length = 1708
Score = 217 bits (553), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 157/244 (64%), Gaps = 10/244 (4%)
Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
LT++GI V+F +TMES+K+ICVRE +++ VVI+DM P P+RRPI+ADSA+MN
Sbjct: 16 LTSLGIAPQFVTFTHVTMESEKYICVRETSPQNS-VVIVDMAMPAQPLRRPITADSALMN 74
Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
P ++++ALK + + LQIFNIE K+K+K+H M + VVFWKWI+P L LVT+
Sbjct: 75 PNTRILALKAQIPGTTQDH----LQIFNIEAKTKIKSHQMPEQVVFWKWITPKLLGLVTQ 130
Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVS----NRVVGA 385
TSVYHWS+EGDS P KMFDR + L QIINYR DP + WL+LIGI+ + V G
Sbjct: 131 TSVYHWSIEGDSEPAKMFDRTANLANNQIINYRCDPSEKWLVLIGIAPGAPERPQLVKGN 190
Query: 386 MQLYSVERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYFGILL 445
MQL+SV+++ SQ +E + A+ G P T++ F T AGQ + L +
Sbjct: 191 MQLFSVDQQRSQALEAHAASFASFKVVGN-ENPSTLICFASKTTNAGQITSKLHVIELGA 249
Query: 446 DHGK 449
GK
Sbjct: 250 QPGK 253
Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/130 (53%), Positives = 87/130 (66%), Gaps = 5/130 (3%)
Query: 1 HAASFASFKSEGNPEPSTLFCFAVRTPAGG----KLHIIEVGTPPAGNTPLAKKAVDVFF 56
HAASFASFK GN PSTL CFA +T G KLH+IE+G P G +KK D+FF
Sbjct: 207 HAASFASFKVVGNENPSTLICFASKTTNAGQITSKLHVIELGAQP-GKPGFSKKQADLFF 265
Query: 57 PPEAANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEAT 116
PP+ +DFPVAMQ+S KY ++Y+ITK G + VYD+ETA +Y NRIS D IF+TA A+
Sbjct: 266 PPDFQDDFPVAMQISQKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTAESSAS 325
Query: 117 GGIIGLTNVG 126
GG + G
Sbjct: 326 GGFYAINRRG 335
Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/101 (65%), Positives = 82/101 (81%)
Query: 526 QSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKE 585
+SYEGL++FLG+ ++ S+D ++HFKYI+AA +TGQIKEVER+ RESN Y+AE+ KNFL E
Sbjct: 720 KSYEGLYFFLGAYLSSSEDPDIHFKYIEAAARTGQIKEVERVTRESNFYDAEKTKNFLME 779
Query: 586 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK 626
AKL D PLI VCDRF FV DL YLY NN+ +YIE YVQK
Sbjct: 780 AKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQK 820
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 126/258 (48%), Gaps = 59/258 (22%)
Query: 310 TDDVVFWKWISPNTLALVTETSV----YHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDP 365
T V+ ISP+ + L E+S Y + G H+T+N I+ + +
Sbjct: 302 TAAAVYRNRISPDPIFLTAESSASGGFYAINRRGQVL-------HATVNDATIVPFVSSQ 354
Query: 366 KQTWLLLIGISAVSNRVVGAMQLY--SVERKCSQPIEEKKSRVAANAPKGILRTPQTIVK 423
L + ++ +N + GA L + +Q ++ + +AA +P+G+LRTP+T+ K
Sbjct: 355 LNNLELAVNLAKRAN-LPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPETVAK 413
Query: 424 FQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCRPVLAQ------------------ 465
FQ VP AGQT PLLQYFG LL GKLN +ESLEL R V+ Q
Sbjct: 414 FQSVPVQAGQTPPLLQYFGTLLTRGKLNAYESLELSRLVVNQNKKNLLENWLAEDKLECS 473
Query: 466 ---------------------------VIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRN 498
V+ +FAE +F KI++Y+K+VGY+PDY+FLL+
Sbjct: 474 EELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQT 533
Query: 499 VMRVNPDQGVGFAQMLVQ 516
++R +P V FA M+ Q
Sbjct: 534 ILRTDPQGAVNFALMMSQ 551
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 87/125 (69%)
Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
++S KY ++Y+ITK G + VYD+ETA +Y NRIS D IF+TA A+GG +NR+GQV
Sbjct: 278 QISQKYGLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTAESSASGGFYAINRRGQV 337
Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAA 848
L +V++ I+P+++ L N +LA+ +A R NL GAE+L V++F LF +Y EAA+ A
Sbjct: 338 LHATVNDATIVPFVSSQLNNLELAVNLAKRANLPGAENLVVQRFQELFAQTKYKEAAELA 397
Query: 849 CKTGQ 853
++ Q
Sbjct: 398 AESPQ 402
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 54/74 (72%), Gaps = 5/74 (6%)
Query: 846 KAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIV-----FVHDLVLYLY 900
+AA +TGQIKEVER+ RESN Y+AE+ KNFL EAKL D PLI V FV DL YLY
Sbjct: 747 EAAARTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLY 806
Query: 901 RNNLQKYIEIYVQK 914
NN+ +YIE YVQK
Sbjct: 807 TNNMLRYIEGYVQK 820
Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 120 IGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAI 179
+ LT++GI V+F +TMES+K+ICVRE +++ VVI+DM P P+RRPI+ADSA+
Sbjct: 14 LTLTSLGIAPQFVTFTHVTMESEKYICVRETSPQNS-VVIVDMAMPAQPLRRPITADSAL 72
Query: 180 MNPASKVIALKGK 192
MNP ++++ALK +
Sbjct: 73 MNPNTRILALKAQ 85
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 35/45 (77%)
Query: 622 IYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRA 666
+ V + +K+LLE WL E+KLECSEELGDLVK D LAL +Y++A
Sbjct: 451 LVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKA 495
Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 618 KYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVKQS---DPTLALSVYLRANIKQSRFV 674
KYIE + G+ +E+ +E +E+ + + ++ D ++V R FV
Sbjct: 744 KYIEAAARTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFG-----FV 798
Query: 675 HDLVLYLYRNNLQKYIEIYVQKI 697
DL YLY NN+ +YIE YVQK+
Sbjct: 799 PDLTHYLYTNNMLRYIEGYVQKV 821
Score = 36.6 bits (83), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 706 FVHDLVLYLYRNNLQKYIEIYVQKVS 731
FV DL YLY NN+ +YIE YVQKV+
Sbjct: 797 FVPDLTHYLYTNNMLRYIEGYVQKVN 822
>sp|Q0WLB5|CLAH2_ARATH Clathrin heavy chain 2 OS=Arabidopsis thaliana GN=CHC2 PE=1 SV=1
Length = 1703
Score = 217 bits (552), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 115/247 (46%), Positives = 154/247 (62%), Gaps = 10/247 (4%)
Query: 207 IYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSA 266
+ L ++GIN ++F +TMESDK+ICVRE +++ VVIIDMN P P+RRPI+ADSA
Sbjct: 13 VLTLPSIGINQQFITFTNVTMESDKYICVRETSPQNS-VVIIDMNMPMQPLRRPITADSA 71
Query: 267 IMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLAL 326
+MNP SK++ALK + + LQIFNIE K+K+K+H M + VVFWKWI+P L L
Sbjct: 72 LMNPNSKILALKAQVPGTTQDH----LQIFNIEAKAKLKSHQMPEQVVFWKWITPKMLGL 127
Query: 327 VTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVS----NRV 382
VT+ SVYHWS+EGDS P KMFDR + L QIINY+ P + WL+LIGI+ S V
Sbjct: 128 VTQNSVYHWSIEGDSEPVKMFDRTANLANNQIINYKCSPNEKWLVLIGIAPGSPERQQLV 187
Query: 383 VGAMQLYSVERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYFG 442
G MQL+SV+++ SQ +E + A G P ++ F AGQ + L
Sbjct: 188 KGNMQLFSVDQQRSQALEAHAASFAQFKVPGN-ENPSILISFASKSFNAGQITSKLHVIE 246
Query: 443 ILLDHGK 449
+ GK
Sbjct: 247 LGAQPGK 253
Score = 146 bits (368), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 82/101 (81%)
Query: 526 QSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKE 585
+SYEGL++FLGS ++ S+D E+HFKYI+AA KTGQIKEVER+ RESN Y+AE+ KNFL E
Sbjct: 720 KSYEGLYFFLGSYLSMSEDPEIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLME 779
Query: 586 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK 626
AKL D PLI VCDRF FV DL YLY NN+ +YIE YVQK
Sbjct: 780 AKLPDARPLINVCDRFSFVPDLTHYLYTNNMLRYIEGYVQK 820
Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 85/130 (65%), Gaps = 5/130 (3%)
Query: 1 HAASFASFKSEGNPEPSTLFCFAVRTPAGG----KLHIIEVGTPPAGNTPLAKKAVDVFF 56
HAASFA FK GN PS L FA ++ G KLH+IE+G P G KK D+FF
Sbjct: 207 HAASFAQFKVPGNENPSILISFASKSFNAGQITSKLHVIELGAQP-GKPSFTKKQADLFF 265
Query: 57 PPEAANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEAT 116
PP+ A+DFPVAMQVS K++++Y+ITK G + VYD+ETA+ IY NRIS D IF+T+ +
Sbjct: 266 PPDFADDFPVAMQVSHKFNLIYVITKLGLLFVYDLETASAIYRNRISPDPIFLTSEASSV 325
Query: 117 GGIIGLTNVG 126
GG + G
Sbjct: 326 GGFYAINRRG 335
Score = 130 bits (326), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 89/125 (71%)
Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
+VS K++++Y+ITK G + VYD+ETA+ IY NRIS D IF+T+ + GG +NR+GQV
Sbjct: 278 QVSHKFNLIYVITKLGLLFVYDLETASAIYRNRISPDPIFLTSEASSVGGFYAINRRGQV 337
Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAA 848
L +V+E IIP+I+G L N +LA+ +A R NL GAE+L V++F LF +Y EAA+ A
Sbjct: 338 LLATVNEATIIPFISGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELA 397
Query: 849 CKTGQ 853
++ Q
Sbjct: 398 AESPQ 402
Score = 123 bits (309), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 88/161 (54%), Gaps = 45/161 (27%)
Query: 401 EKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCR 460
++ + +AA +P+GILRTP T+ KFQ VP AGQT PLLQYFG LL GKLN +ESLEL R
Sbjct: 391 KEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNSYESLELSR 450
Query: 461 PVLAQ---------------------------------------------VIQSFAETGQ 475
V+ Q V+ +FAE +
Sbjct: 451 LVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERRE 510
Query: 476 FQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQ 516
F KI++Y+K+VGY+PDY+FLL+ ++R +P V FA M+ Q
Sbjct: 511 FDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQ 551
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 119 IIGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSA 178
++ L ++GIN ++F +TMESDK+ICVRE +++ VVIIDMN P P+RRPI+ADSA
Sbjct: 13 VLTLPSIGINQQFITFTNVTMESDKYICVRETSPQNS-VVIIDMNMPMQPLRRPITADSA 71
Query: 179 IMNPASKVIALKGK 192
+MNP SK++ALK +
Sbjct: 72 LMNPNSKILALKAQ 85
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 54/74 (72%), Gaps = 5/74 (6%)
Query: 846 KAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIV-----FVHDLVLYLY 900
+AA KTGQIKEVER+ RESN Y+AE+ KNFL EAKL D PLI V FV DL YLY
Sbjct: 747 EAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFSFVPDLTHYLY 806
Query: 901 RNNLQKYIEIYVQK 914
NN+ +YIE YVQK
Sbjct: 807 TNNMLRYIEGYVQK 820
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 35/45 (77%)
Query: 622 IYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRA 666
+ V + +K+LLE WL E+KLECSEELGDLVK D LAL +Y++A
Sbjct: 451 LVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKA 495
Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 618 KYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVKQS---DPTLALSVYLRANIKQSRFV 674
KYIE + G+ +E+ +E +E+ + + ++ D ++V R + FV
Sbjct: 744 KYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFS-----FV 798
Query: 675 HDLVLYLYRNNLQKYIEIYVQKI 697
DL YLY NN+ +YIE YVQK+
Sbjct: 799 PDLTHYLYTNNMLRYIEGYVQKV 821
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 706 FVHDLVLYLYRNNLQKYIEIYVQKVS 731
FV DL YLY NN+ +YIE YVQKV+
Sbjct: 797 FVPDLTHYLYTNNMLRYIEGYVQKVN 822
>sp|Q10161|CLH_SCHPO Probable clathrin heavy chain OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=chc1 PE=1 SV=1
Length = 1666
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/220 (46%), Positives = 147/220 (66%), Gaps = 11/220 (5%)
Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
L +VGI S F +T+ESDK++CVR+ QVVI+D+ DP+N +RRPISADS I++
Sbjct: 15 LASVGIQPSSFGFANVTLESDKYVCVRDNPNGVNQVVIVDLEDPSNVLRRPISADSVILH 74
Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
P K+IALK A + LQ+F++E K+K+ ++ M DVV+W WIS + + +VT+
Sbjct: 75 PKKKIIALK----------AQRQLQVFDLEAKAKINSYVMNQDVVYWTWISDSVIGMVTD 124
Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
TSV+HW++ G S P KMFDRHS+LNG QII+Y+++ + W LIGIS+ NR+ G +QLY
Sbjct: 125 TSVFHWTVSG-SDPVKMFDRHSSLNGTQIISYKSNYNEEWFTLIGISSRDNRIAGNLQLY 183
Query: 390 SVERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPT 429
S +RK SQP+E S A P+G+ Q + ++PT
Sbjct: 184 SKKRKVSQPLESHASAFAVIQPEGVDHEVQVLALASRLPT 223
Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 109/152 (71%), Gaps = 16/152 (10%)
Query: 488 YSPDYVF-LLRNVMRVNPDQGVGFAQMLVQDDEPLADI------------NQSYEGLFYF 534
+SPD V+ LR ++R N Q + Q++VQ +D+ +++EGL+Y+
Sbjct: 655 FSPDEVYDYLREMLRSNLRQNL---QIVVQIATRYSDLVGAQRIIEMFEKFKTFEGLYYY 711
Query: 535 LGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPL 594
LGSIVN ++D EV +KYIQAAC Q EVERICR++N YN E+VKN LKEAKL DQLPL
Sbjct: 712 LGSIVNITEDPEVVYKYIQAACLMNQFTEVERICRDNNVYNPEKVKNLLKEAKLADQLPL 771
Query: 595 IIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK 626
I+VCDR+DFV+DLV YL+RNN+ ++IEIYVQ+
Sbjct: 772 ILVCDRYDFVNDLVFYLFRNNMFQFIEIYVQR 803
Score = 147 bits (371), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 93/123 (75%)
Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
++ + Y+V Y++TK+G+IHVYD+ETA CIYMNR+S ++IFVT H++ G++ +NRKGQV
Sbjct: 263 EIGSTYNVAYVVTKYGFIHVYDLETAKCIYMNRVSGESIFVTTAHKSVNGLMAINRKGQV 322
Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAA 848
LSVS++ + IIPYI L +P LA+R+A NL GA++L++++F L G YSEAAK A
Sbjct: 323 LSVSINPETIIPYILSNLNDPGLAVRMASHANLPGADNLYMQQFQQLMAQGNYSEAAKVA 382
Query: 849 CKT 851
+
Sbjct: 383 ASS 385
Score = 143 bits (360), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 92/139 (66%), Gaps = 2/139 (1%)
Query: 1 HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA 60
HA++FA + EG + A R P G KL I+EV P N A K VD+FFPPEA
Sbjct: 196 HASAFAVIQPEGVDHEVQVLALASRLPTGSKLSIVEVDRNP-NNPAFATKTVDLFFPPEA 254
Query: 61 ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGII 120
NDFP+A+++ + Y+V Y++TK+G+IHVYD+ETA CIYMNR+S ++IFVT H++ G++
Sbjct: 255 VNDFPIAIEIGSTYNVAYVVTKYGFIHVYDLETAKCIYMNRVSGESIFVTTAHKSVNGLM 314
Query: 121 GLTNVGINVGSVSFNTLTM 139
+ G V SVS N T+
Sbjct: 315 AINRKG-QVLSVSINPETI 332
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 128/471 (27%), Positives = 206/471 (43%), Gaps = 145/471 (30%)
Query: 384 GAMQLY--SVERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYF 441
GA LY ++ +Q + ++VAA++P+GILRT Q I +F+ + GQ +P+LQYF
Sbjct: 357 GADNLYMQQFQQLMAQGNYSEAAKVAASSPRGILRTSQVIDQFKLIQAAPGQIAPILQYF 416
Query: 442 GILLDHGKLNKHESLELCRPVLAQ------------------------------------ 465
G LLD G LN+HE++EL RPVLAQ
Sbjct: 417 GTLLDKGPLNEHETIELARPVLAQNRIQLLEKWYGENKLACTEALGDLVKPYNTPFALKI 476
Query: 466 ---------VIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFA----- 511
V+ +E G F K+ Y + +PDYV LL+N++RVNPDQ FA
Sbjct: 477 YETANVPNKVVMCLSELGDFGKLATYTSQQNITPDYVSLLQNLVRVNPDQAAEFATQMFN 536
Query: 512 ----------------QMLVQDD-----EPLADINQSYEGLFYFLGSI--VNYSQDQE-- 546
Q LVQ + L D N + L L I +N Q +
Sbjct: 537 SNPSINLEKIVDIFMSQNLVQQATAFLLDALKDDNPEHSHLQTRLLEINLINAPQVADAI 596
Query: 547 ------VHFK--YIQAAC-KTGQIK----------EVERICRESNCYNAERVKNFLKEAK 587
HF I + C + G ++ +++R+ SN N E + N+
Sbjct: 597 LGNQMFTHFDRAVIASLCERAGLVQRALELYDKPADIKRVIVHSNLLNPEWLMNYFS--- 653
Query: 588 LTDQLPLIIVCDRF--DFVHDLVLYLYRNNLQKYIEIYVQ--------KGRKHLLEKWLK 637
RF D V+D + + R+NL++ ++I VQ G + ++E + K
Sbjct: 654 ------------RFSPDEVYDYLREMLRSNLRQNLQIVVQIATRYSDLVGAQRIIEMFEK 701
Query: 638 EEKLE-CSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLYLYRNNLQKYIEIY-VQ 695
+ E LG +V ++ + Y++A ++F V + R+N +Y +
Sbjct: 702 FKTFEGLYYYLGSIVNITEDPEVVYKYIQAACLMNQFTE--VERICRDN-----NVYNPE 754
Query: 696 KIRIKIKQSR---------------FVHDLVLYLYRNNLQKYIEIYVQKVS 731
K++ +K+++ FV+DLV YL+RNN+ ++IEIYVQ+++
Sbjct: 755 KVKNLLKEAKLADQLPLILVCDRYDFVNDLVFYLFRNNMFQFIEIYVQRIN 805
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 58/74 (78%), Gaps = 5/74 (6%)
Query: 846 KAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIV-----FVHDLVLYLY 900
+AAC Q EVERICR++N YN E+VKN LKEAKL DQLPLI+V FV+DLV YL+
Sbjct: 730 QAACLMNQFTEVERICRDNNVYNPEKVKNLLKEAKLADQLPLILVCDRYDFVNDLVFYLF 789
Query: 901 RNNLQKYIEIYVQK 914
RNN+ ++IEIYVQ+
Sbjct: 790 RNNMFQFIEIYVQR 803
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 53/74 (71%)
Query: 119 IIGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSA 178
++ L +VGI S F +T+ESDK++CVR+ QVVI+D+ DP+N +RRPISADS
Sbjct: 12 VLQLASVGIQPSSFGFANVTLESDKYVCVRDNPNGVNQVVIVDLEDPSNVLRRPISADSV 71
Query: 179 IMNPASKVIALKGK 192
I++P K+IALK +
Sbjct: 72 ILHPKKKIIALKAQ 85
>sp|Q0WNJ6|CLAH1_ARATH Clathrin heavy chain 1 OS=Arabidopsis thaliana GN=CHC1 PE=1 SV=1
Length = 1705
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 153/247 (61%), Gaps = 10/247 (4%)
Query: 207 IYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSA 266
+ L +VGI ++F +TMESDK+ICVRE +++ VVIIDMN P P+RRPI+ADSA
Sbjct: 13 VLTLPSVGIGQQFITFTNVTMESDKYICVRETAPQNS-VVIIDMNMPMQPLRRPITADSA 71
Query: 267 IMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLAL 326
+MNP S+++ALK + + LQIFNIE K+K+K+H M + V FWKWI+P L L
Sbjct: 72 LMNPNSRILALKAQVPGTTQDH----LQIFNIEAKAKLKSHQMPEQVAFWKWITPKMLGL 127
Query: 327 VTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVS----NRV 382
VT+TSVYHWS+EGDS P KMFDR + L QIINY+ P + WL+LIGI+ S V
Sbjct: 128 VTQTSVYHWSIEGDSEPVKMFDRTANLANNQIINYKCSPNEKWLVLIGIAPGSPERPQLV 187
Query: 383 VGAMQLYSVERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYFG 442
G MQL+SV+++ SQ +E + A G P ++ F AGQ + L
Sbjct: 188 KGNMQLFSVDQQRSQALEAHAASFAQFKVPGN-ENPSILISFASKSFNAGQITSKLHVIE 246
Query: 443 ILLDHGK 449
+ GK
Sbjct: 247 LGAQPGK 253
Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 82/101 (81%)
Query: 526 QSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKE 585
+SYEGL++FLGS ++ S+D E+HFKYI+AA KTGQIKEVER+ RESN Y+AE+ KNFL E
Sbjct: 720 KSYEGLYFFLGSYLSMSEDPEIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLME 779
Query: 586 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK 626
AKL D PLI VCDRF FV DL YLY NN+ +YIE YVQK
Sbjct: 780 AKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQK 820
Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 85/130 (65%), Gaps = 5/130 (3%)
Query: 1 HAASFASFKSEGNPEPSTLFCFAVRTPAGG----KLHIIEVGTPPAGNTPLAKKAVDVFF 56
HAASFA FK GN PS L FA ++ G KLH+IE+G P G KK D+FF
Sbjct: 207 HAASFAQFKVPGNENPSILISFASKSFNAGQITSKLHVIELGAQP-GKPSFTKKQADLFF 265
Query: 57 PPEAANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEAT 116
PP+ A+DFPVAMQVS K++++Y+ITK G + VYD+ETA+ IY NRIS D IF+T+ +
Sbjct: 266 PPDFADDFPVAMQVSHKFNLIYVITKLGLLFVYDLETASAIYRNRISPDPIFLTSEASSV 325
Query: 117 GGIIGLTNVG 126
GG + G
Sbjct: 326 GGFYAINRRG 335
Score = 130 bits (326), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 89/125 (71%)
Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
+VS K++++Y+ITK G + VYD+ETA+ IY NRIS D IF+T+ + GG +NR+GQV
Sbjct: 278 QVSHKFNLIYVITKLGLLFVYDLETASAIYRNRISPDPIFLTSEASSVGGFYAINRRGQV 337
Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAA 848
L +V+E IIP+I+G L N +LA+ +A R NL GAE+L V++F LF +Y EAA+ A
Sbjct: 338 LLATVNEATIIPFISGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELA 397
Query: 849 CKTGQ 853
++ Q
Sbjct: 398 AESPQ 402
Score = 123 bits (309), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 88/161 (54%), Gaps = 45/161 (27%)
Query: 401 EKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCR 460
++ + +AA +P+GILRTP T+ KFQ VP AGQT PLLQYFG LL GKLN +ESLEL R
Sbjct: 391 KEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNSYESLELSR 450
Query: 461 PVLAQ---------------------------------------------VIQSFAETGQ 475
V+ Q V+ +FAE +
Sbjct: 451 LVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERRE 510
Query: 476 FQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQ 516
F KI++Y+K+VGY+PDY+FLL+ ++R +P V FA M+ Q
Sbjct: 511 FDKILIYSKQVGYTPDYMFLLQTILRTDPQGAVNFALMMSQ 551
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 54/74 (72%), Gaps = 5/74 (6%)
Query: 846 KAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIV-----FVHDLVLYLY 900
+AA KTGQIKEVER+ RESN Y+AE+ KNFL EAKL D PLI V FV DL YLY
Sbjct: 747 EAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLY 806
Query: 901 RNNLQKYIEIYVQK 914
NN+ +YIE YVQK
Sbjct: 807 TNNMLRYIEGYVQK 820
Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 119 IIGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSA 178
++ L +VGI ++F +TMESDK+ICVRE +++ VVIIDMN P P+RRPI+ADSA
Sbjct: 13 VLTLPSVGIGQQFITFTNVTMESDKYICVRETAPQNS-VVIIDMNMPMQPLRRPITADSA 71
Query: 179 IMNPASKVIALKGK 192
+MNP S+++ALK +
Sbjct: 72 LMNPNSRILALKAQ 85
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 35/45 (77%)
Query: 622 IYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRA 666
+ V + +K+LLE WL E+KLECSEELGDLVK D LAL +Y++A
Sbjct: 451 LVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKA 495
Score = 36.6 bits (83), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 618 KYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVKQS---DPTLALSVYLRANIKQSRFV 674
KYIE + G+ +E+ +E +E+ + + ++ D ++V R FV
Sbjct: 744 KYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFG-----FV 798
Query: 675 HDLVLYLYRNNLQKYIEIYVQKI 697
DL YLY NN+ +YIE YVQK+
Sbjct: 799 PDLTHYLYTNNMLRYIEGYVQKV 821
Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 706 FVHDLVLYLYRNNLQKYIEIYVQKVS 731
FV DL YLY NN+ +YIE YVQKV+
Sbjct: 797 FVPDLTHYLYTNNMLRYIEGYVQKVN 822
>sp|P25870|CLH_DICDI Clathrin heavy chain OS=Dictyostelium discoideum GN=chcA PE=1 SV=1
Length = 1694
Score = 197 bits (500), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 95/192 (49%), Positives = 130/192 (67%), Gaps = 11/192 (5%)
Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQ-VVIIDMNDPTNPIRRPISADSAIM 268
LTN+GI S+ F+TLTMES+K+IC+RE + VVIID ++P+ +R+ + D+AIM
Sbjct: 14 LTNLGIGSNSIGFSTLTMESEKYICIRETTPDDKNNVVIIDTDNPSQILRKQMKTDAAIM 73
Query: 269 NPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVT 328
NP ++ALK + LQ+ +IE K ++K+ M + + FWKWISPNTLALVT
Sbjct: 74 NPKEPILALK----------IGQVLQLISIEQKMQLKSCQMQEPLEFWKWISPNTLALVT 123
Query: 329 ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQL 388
TSV+HW+ EG+S P K+FDRH L +IINYR+D Q WL+L+ I RVVG +QL
Sbjct: 124 ATSVFHWTKEGNSDPVKVFDRHPDLQNTEIINYRSDSTQNWLVLVAIHQRDGRVVGRIQL 183
Query: 389 YSVERKCSQPIE 400
YSVE++ SQ IE
Sbjct: 184 YSVEKQISQSIE 195
Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/123 (58%), Positives = 91/123 (73%)
Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
+VS KY+V+Y++TK GYIH++D+ TA IY NRIS++ IFVTA E+T GII VNRKGQV
Sbjct: 264 QVSEKYEVIYMVTKLGYIHLFDLGTANLIYRNRISNENIFVTAFEESTNGIIAVNRKGQV 323
Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAA 848
LSVS+D+ NIIPYI TL N +LA+ +A +NNL GAE L +F F GQY EAAK A
Sbjct: 324 LSVSIDDKNIIPYICNTLNNLELAISMACKNNLPGAEGLLTTQFERYFQQGQYKEAAKVA 383
Query: 849 CKT 851
+
Sbjct: 384 ADS 386
Score = 140 bits (353), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 94/145 (64%), Gaps = 9/145 (6%)
Query: 491 DYVFLLRNVMRVNPDQG----VGFAQMLVQDDEPLADIN-----QSYEGLFYFLGSIVNY 541
D + +R+ +R NP Q V A P A I + YEGL+ +L +V
Sbjct: 663 DRMECMRDFLRTNPRQNLQLVVAIAVSYSDQITPEAIIAMFESFRLYEGLYLYLTQVVVT 722
Query: 542 SQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVCDRF 601
S EVHFKYI+AA K Q KEVER+CR+SN Y+ E+ ++FLKEAKL DQLPLIIVCDR+
Sbjct: 723 STSPEVHFKYIEAAAKINQFKEVERMCRDSNYYDPEKTRDFLKEAKLPDQLPLIIVCDRY 782
Query: 602 DFVHDLVLYLYRNNLQKYIEIYVQK 626
+F+ DL YLY+NNL KYIE YVQK
Sbjct: 783 EFISDLTNYLYKNNLSKYIEAYVQK 807
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 92/137 (67%), Gaps = 6/137 (4%)
Query: 1 HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTP-LAKKAVDVFFPPE 59
HAA FA++ G PSTLF + RT K+ ++EV G+ P K+A DVF+PPE
Sbjct: 197 HAACFANYIVPGATRPSTLFAISSRTQNASKILVLEVSK---GDGPNFQKRASDVFYPPE 253
Query: 60 -AANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGG 118
A+DFPVAMQVS KY+V+Y++TK GYIH++D+ TA IY NRIS++ IFVTA E+T G
Sbjct: 254 IGASDFPVAMQVSEKYEVIYMVTKLGYIHLFDLGTANLIYRNRISNENIFVTAFEESTNG 313
Query: 119 IIGLTNVGINVGSVSFN 135
II + G V SVS +
Sbjct: 314 IIAVNRKG-QVLSVSID 329
Score = 116 bits (290), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 102/208 (49%), Gaps = 49/208 (23%)
Query: 371 LLIGIS-AVSNRVVGAMQLYSV--ERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQV 427
L + IS A N + GA L + ER Q ++ ++VAA++P ILR QTI KFQ +
Sbjct: 344 LELAISMACKNNLPGAEGLLTTQFERYFQQGQYKEAAKVAADSPGSILRNLQTIQKFQSI 403
Query: 428 PTPAGQTSPLLQYFGILLDHGKLNKHESLELCRPVLAQ---------------------- 465
P Q S LLQYFG+LL+ GKLNK ESLEL RPVLAQ
Sbjct: 404 PPIPDQPSALLQYFGMLLEKGKLNKVESLELVRPVLAQGKKPILEKWLTEDKLECSEQLG 463
Query: 466 -----------------------VIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRV 502
VI FAETG+F KI+ Y KK Y PD++FLL+ +
Sbjct: 464 DEVRPHDRKLALSIYYRANASDKVITLFAETGEFDKIIAYCKKFNYKPDFMFLLQRMANA 523
Query: 503 NPDQGVGFAQMLVQDD-EPLADINQSYE 529
NP FA LV+++ P D NQ E
Sbjct: 524 NPMGAADFAVKLVKEEGGPYIDANQVVE 551
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 56/74 (75%), Gaps = 5/74 (6%)
Query: 846 KAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIV-----FVHDLVLYLY 900
+AA K Q KEVER+CR+SN Y+ E+ ++FLKEAKL DQLPLIIV F+ DL YLY
Sbjct: 734 EAAAKINQFKEVERMCRDSNYYDPEKTRDFLKEAKLPDQLPLIIVCDRYEFISDLTNYLY 793
Query: 901 RNNLQKYIEIYVQK 914
+NNL KYIE YVQK
Sbjct: 794 KNNLSKYIEAYVQK 807
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 119 IIGLTNVGINVGSVSFNTLTMESDKFICVREKIAESA-QVVIIDMNDPTNPIRRPISADS 177
++ LTN+GI S+ F+TLTMES+K+IC+RE + VVIID ++P+ +R+ + D+
Sbjct: 11 VLQLTNLGIGSNSIGFSTLTMESEKYICIRETTPDDKNNVVIIDTDNPSQILRKQMKTDA 70
Query: 178 AIMNPASKVIALK 190
AIMNP ++ALK
Sbjct: 71 AIMNPKEPILALK 83
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 34/42 (80%)
Query: 626 KGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRAN 667
+G+K +LEKWL E+KLECSE+LGD V+ D LALS+Y RAN
Sbjct: 441 QGKKPILEKWLTEDKLECSEQLGDEVRPHDRKLALSIYYRAN 482
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 618 KYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDL 677
KYIE + + +E+ ++ E+ D +K++ L + + + + F+ DL
Sbjct: 731 KYIEAAAKINQFKEVERMCRDSNYYDPEKTRDFLKEAKLPDQLPLIIVCD--RYEFISDL 788
Query: 678 VLYLYRNNLQKYIEIYVQKI 697
YLY+NNL KYIE YVQKI
Sbjct: 789 TNYLYKNNLSKYIEAYVQKI 808
Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 706 FVHDLVLYLYRNNLQKYIEIYVQKVS 731
F+ DL YLY+NNL KYIE YVQK++
Sbjct: 784 FISDLTNYLYKNNLSKYIEAYVQKIN 809
>sp|P22137|CLH_YEAST Clathrin heavy chain OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CHC1 PE=1 SV=1
Length = 1653
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 82/98 (83%)
Query: 529 EGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKEAKL 588
EGL+Y+L S+VN ++D++V +KYI+AA K Q +E+ERI +++N Y+ ERVKNFLK+A L
Sbjct: 715 EGLYYYLASLVNLTEDKDVVYKYIEAAAKMKQYREIERIVKDNNVYDPERVKNFLKDANL 774
Query: 589 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK 626
DQLPL+IVCDRFDFVH+++LYLY++ K+IE YVQ+
Sbjct: 775 EDQLPLVIVCDRFDFVHEMILYLYKSQNLKFIETYVQQ 812
Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 87/137 (63%)
Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
+VS KY ++YL+TK+G+IH+Y++ET T +++NRI+++++F AP+ GI +N+KGQV
Sbjct: 271 QVSEKYGIIYLLTKYGFIHLYELETGTNLFVNRITAESVFTAAPYNHENGIACINKKGQV 330
Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAA 848
L+V + I+PYI L N LAL +A R L GA+DLF ++F L Y AAK A
Sbjct: 331 LAVEISTSQIVPYILNKLSNVALALIVATRGGLPGADDLFQKQFESLLLQNDYQNAAKVA 390
Query: 849 CKTGQIKEVERICRESN 865
+ ++ I R N
Sbjct: 391 ASSTSLRNQNTINRLKN 407
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 109/194 (56%), Gaps = 12/194 (6%)
Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
L ++GI+ + F + T ESD F+ VRE + V I+D+ R+ + DSAIM+
Sbjct: 14 LMSLGISPQFLDFRSTTFESDHFVTVRETKDGTNSVAIVDLAKGNEVTRKNMGGDSAIMH 73
Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
P+ VI+++ +QIFN+E KSK+K+ + + V+FW+W+S TL VT
Sbjct: 74 PSQMVISVRANG---------TIVQIFNLETKSKLKSFTLDEPVIFWRWLSETTLGFVTA 124
Query: 330 TSVYHWSM-EG--DSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAM 386
S+ ++ +G ++ P+ + RH+ LN QIIN+ + W ++GI + R+ G +
Sbjct: 125 RSILTSNVFDGNVNAKPQLLTLRHANLNNTQIINFVANKNLDWFAVVGILQENGRIAGRI 184
Query: 387 QLYSVERKCSQPIE 400
QL+S +R SQ I+
Sbjct: 185 QLFSKQRNISQAID 198
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 81/129 (62%), Gaps = 3/129 (2%)
Query: 1 HAASFASFKSEGN-PEPSTLFCFAVR--TPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFP 57
H A F + EGN P +F R T G+L IIE+ + + K+ D+FFP
Sbjct: 200 HVAIFTNILLEGNGSTPVQVFVTGNRNATTGAGELRIIEIDHDASLPSQYQKETTDIFFP 259
Query: 58 PEAANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATG 117
P+A NDFP+A+QVS KY ++YL+TK+G+IH+Y++ET T +++NRI+++++F AP+
Sbjct: 260 PDATNDFPIAVQVSEKYGIIYLLTKYGFIHLYELETGTNLFVNRITAESVFTAAPYNHEN 319
Query: 118 GIIGLTNVG 126
GI + G
Sbjct: 320 GIACINKKG 328
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 47/170 (27%)
Query: 401 EKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCR 460
+ ++VAA++ LR TI + + + P G SP+L YF LLD GKLNK E++EL R
Sbjct: 384 QNAAKVAASSTS--LRNQNTINRLKNIQAPPGAISPILLYFSTLLDKGKLNKEETIELAR 441
Query: 461 PVL---------------------------------------------AQVIQSFAETGQ 475
PVL A+VI AE Q
Sbjct: 442 PVLQQDRKQLFEKWLKEDKLECSEELGDIVKPFDTTLALACYLRAGAHAKVISCLAELQQ 501
Query: 476 FQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQDDEPLADIN 525
F+KI+ Y +KVGY P+++ L+ +++R +PD+ FA L+Q+ E + I+
Sbjct: 502 FEKIIPYCQKVGYQPNFLVLISSLIRSSPDRASEFAVSLLQNPETASQID 551
Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 56/74 (75%), Gaps = 5/74 (6%)
Query: 846 KAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIV-----FVHDLVLYLY 900
+AA K Q +E+ERI +++N Y+ ERVKNFLK+A L DQLPL+IV FVH+++LYLY
Sbjct: 739 EAAAKMKQYREIERIVKDNNVYDPERVKNFLKDANLEDQLPLVIVCDRFDFVHEMILYLY 798
Query: 901 RNNLQKYIEIYVQK 914
++ K+IE YVQ+
Sbjct: 799 KSQNLKFIETYVQQ 812
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 36/43 (83%)
Query: 624 VQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRA 666
+Q+ RK L EKWLKE+KLECSEELGD+VK D TLAL+ YLRA
Sbjct: 444 LQQDRKQLFEKWLKEDKLECSEELGDIVKPFDTTLALACYLRA 486
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 119 IIGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSA 178
++ L ++GI+ + F + T ESD F+ VRE + V I+D+ R+ + DSA
Sbjct: 11 LVDLMSLGISPQFLDFRSTTFESDHFVTVRETKDGTNSVAIVDLAKGNEVTRKNMGGDSA 70
Query: 179 IMNPASKVIALKG 191
IM+P+ VI+++
Sbjct: 71 IMHPSQMVISVRA 83
Score = 37.4 bits (85), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 618 KYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDL 677
KYIE + + +E+ +K+ + E + + +K D L + L + FVH++
Sbjct: 736 KYIEAAAKMKQYREIERIVKDNNVYDPERVKNFLK--DANLEDQLPLVIVCDRFDFVHEM 793
Query: 678 VLYLYRNNLQKYIEIYVQKI 697
+LYLY++ K+IE YVQ++
Sbjct: 794 ILYLYKSQNLKFIETYVQQV 813
Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 706 FVHDLVLYLYRNNLQKYIEIYVQKVS 731
FVH+++LYLY++ K+IE YVQ+V+
Sbjct: 789 FVHEMILYLYKSQNLKFIETYVQQVN 814
>sp|Q652L2|HIRA_ORYSJ Protein HIRA OS=Oryza sativa subsp. japonica GN=Os09g0567700 PE=2
SV=1
Length = 975
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 77 VYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGLTNV 125
+ L+T+ G ++++D+ T TC+ + ++S VT+P EA G G V
Sbjct: 706 LLLVTRRGLMYIWDLYTRTCVLHDSLAS---LVTSPDEAAGKDTGTVKV 751
>sp|Q00IB7|PKHH1_DANRE Pleckstrin homology domain-containing family H member 1 OS=Danio
rerio GN=plekhh1 PE=2 SV=1
Length = 1433
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 82/207 (39%), Gaps = 25/207 (12%)
Query: 389 YSVERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYFGILLD-- 446
YS++ CS+P E K R ++ + + + P+T+ K + Q + + IL +
Sbjct: 615 YSLDSDCSEP-EHKVQRTSSYSCESV--GPETLEKTGYLLKMGSQVKAWKRRWFILRNGE 671
Query: 447 --------------HGKLNKHESLELCRPVLAQVIQSFAETGQFQKIVLYAKKVGYSPDY 492
G++ + S + R AQ Q E F L A D+
Sbjct: 672 ILYYKSPSDVIRKPQGQMELNSSCHIARGEGAQTFQLITEKKTF---YLAADSPNILEDW 728
Query: 493 VFLLRNVMRVNPDQGVGFAQMLVQDDEP-LADINQSYEGLFY--FLGSIVNYSQDQEVHF 549
+ +L+NV++V + + + L + + L + +G + Y ++QE F
Sbjct: 729 IRVLQNVLKVQASGPISMDKEVKPTARGWLTKVKHGHSKLVWCALIGKVFYYYRNQEDKF 788
Query: 550 KYIQAACKTGQIKEVERICRESNCYNA 576
Q + +++EV+R C Y A
Sbjct: 789 PLGQLRVREARVEEVDRSCDSDEDYEA 815
>sp|A8FE66|ODO1_BACP2 2-oxoglutarate dehydrogenase E1 component OS=Bacillus pumilus
(strain SAFR-032) GN=odhA PE=3 SV=1
Length = 944
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 378 VSNRVVGAMQLYSVERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPL 437
V+N A + + R+ + E+ + PK +LR P ++ + Q++ GQ P+
Sbjct: 752 VANLTSAAQYFHILRRQAKMLLREEIRPLVIMTPKSLLRNPNSLSEVQELTD--GQFQPV 809
Query: 438 LQYFGILLDHGKLNK 452
L+ G++ DH K+++
Sbjct: 810 LEQPGLVHDHEKVSR 824
>sp|C6E6I5|PPNK_GEOSM Probable inorganic polyphosphate/ATP-NAD kinase OS=Geobacter sp.
(strain M21) GN=ppnK PE=3 SV=1
Length = 288
Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 735 DVVYLITKFGYIHVYDIETAT-CIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSVSV 793
DVV I K + D+ET+ C Y+ +D + V+ P +TG + N G +L +
Sbjct: 145 DVV--INKGALARIIDMETSVNCRYLTTFKADGLIVSTPTGSTGYSLSAN--GPILHPEL 200
Query: 794 DEDNIIPYINGTLQNPDLAL----RIAVRNNLAGAEDLFVR---KFNLLFTNGQYSEAAK 846
+ +I P TL N + + IA++ N A E +F+ + + +G + K
Sbjct: 201 ECISITPICPHTLTNRPVVVAADSHIAIKLNYAPDESVFLTLDGQVGMKLLSGDVVQITK 260
Query: 847 AACKTGQIK 855
AA T I+
Sbjct: 261 AAHVTRLIR 269
>sp|Q1RIT1|DAPF_RICBR Diaminopimelate epimerase OS=Rickettsia bellii (strain RML369-C)
GN=dapF PE=1 SV=1
Length = 269
Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 94 ATCIYMNRISSDTIFVTAPHEATGGIIGLTNVGINVGSVSFNTLTMESDKFICVREKIAE 153
A IY++ D V + +I N+ +NVG VSFN M S R+KI E
Sbjct: 83 AKLIYLDTGKKDITVVVGNKKLLCHVIDENNISVNVGGVSFNESWMPS------RDKIWE 136
Query: 154 SAQVVIIDMN-----DPTNP 168
A+ +ID+ D NP
Sbjct: 137 FAERYMIDLKETICVDVGNP 156
>sp|A8GWH4|DAPF_RICB8 Diaminopimelate epimerase OS=Rickettsia bellii (strain OSU 85-389)
GN=dapF PE=1 SV=1
Length = 269
Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 94 ATCIYMNRISSDTIFVTAPHEATGGIIGLTNVGINVGSVSFNTLTMESDKFICVREKIAE 153
A IY++ D V + +I N+ +NVG VSFN M S R+KI E
Sbjct: 83 AKLIYLDTGKKDITVVVGNKKLLCHVIDENNISVNVGGVSFNESWMPS------RDKIWE 136
Query: 154 SAQVVIIDMN-----DPTNP 168
A+ +ID+ D NP
Sbjct: 137 FAERYMIDLKETICVDVGNP 156
>sp|Q5XIR8|CLHC1_RAT Clathrin heavy chain linker domain-containing protein 1 OS=Rattus
norvegicus GN=Clhc1 PE=2 SV=1
Length = 585
Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 401 EKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYF 441
EK + AAN+PK IL+ T+ KF+ + G+ PLL +F
Sbjct: 311 EKAACFAANSPKRILQNAGTMNKFKAIGKVRGKPLPLLLFF 351
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 341,978,605
Number of Sequences: 539616
Number of extensions: 14824307
Number of successful extensions: 36469
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 36194
Number of HSP's gapped (non-prelim): 238
length of query: 923
length of database: 191,569,459
effective HSP length: 127
effective length of query: 796
effective length of database: 123,038,227
effective search space: 97938428692
effective search space used: 97938428692
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)