Query psy1644
Match_columns 923
No_of_seqs 298 out of 373
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 21:21:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xi4_A Clathrin heavy chain; a 100.0 6E-185 2E-189 1669.4 37.3 498 202-724 8-895 (1630)
2 1bpo_A Protein (clathrin); cla 100.0 3E-124 1E-128 1038.7 37.1 416 202-888 8-464 (494)
3 2xzh_A Clathrin heavy chain 1; 100.0 3E-116 9E-121 949.1 27.9 356 202-828 9-365 (365)
4 1bpo_A Protein (clathrin); cla 100.0 1.9E-68 6.4E-73 593.1 13.0 136 1-137 197-332 (494)
5 1xi4_A Clathrin heavy chain; a 100.0 6E-63 2E-67 602.2 17.7 127 719-846 256-382 (1630)
6 2xzh_A Clathrin heavy chain 1; 100.0 2.4E-47 8.1E-52 412.7 15.9 136 1-137 198-333 (365)
7 3zwl_B Eukaryotic translation 98.0 0.0012 4.1E-08 65.7 22.9 132 242-394 196-347 (369)
8 3mkq_A Coatomer beta'-subunit; 98.0 0.0049 1.7E-07 69.7 30.2 267 66-374 188-487 (814)
9 4aez_A CDC20, WD repeat-contai 97.7 0.01 3.4E-07 62.2 24.3 260 29-393 112-380 (401)
10 1gxr_A ESG1, transducin-like e 97.6 0.056 1.9E-06 53.1 28.2 127 243-391 205-335 (337)
11 3i2n_A WD repeat-containing pr 97.6 0.0068 2.3E-07 60.4 21.0 111 268-394 176-292 (357)
12 3vl1_A 26S proteasome regulato 97.5 0.0065 2.2E-07 62.7 20.5 136 242-393 268-419 (420)
13 1l0q_A Surface layer protein; 97.5 0.042 1.4E-06 56.2 25.0 132 242-393 137-275 (391)
14 1pgu_A Actin interacting prote 97.4 0.029 1E-06 60.5 23.8 305 30-392 274-613 (615)
15 3bws_A Protein LP49; two-domai 97.4 0.044 1.5E-06 56.9 24.3 131 242-392 282-431 (433)
16 3i2n_A WD repeat-containing pr 97.3 0.091 3.1E-06 52.2 25.1 132 243-393 190-353 (357)
17 4aez_A CDC20, WD repeat-contai 97.2 0.092 3.2E-06 54.9 25.0 132 242-393 195-336 (401)
18 1pgu_A Actin interacting prote 97.2 0.067 2.3E-06 57.7 24.5 107 265-393 411-519 (615)
19 2xyi_A Probable histone-bindin 97.2 0.025 8.5E-07 60.2 20.3 139 242-397 253-414 (430)
20 1r5m_A SIR4-interacting protei 97.1 0.083 2.9E-06 53.6 22.8 131 243-392 269-424 (425)
21 4gga_A P55CDC, cell division c 97.1 0.3 1E-05 51.5 27.9 131 243-392 252-394 (420)
22 4ery_A WD repeat-containing pr 97.1 0.099 3.4E-06 52.1 23.0 108 266-392 198-311 (312)
23 1gxr_A ESG1, transducin-like e 97.1 0.13 4.4E-06 50.6 23.0 86 243-337 246-335 (337)
24 3dw8_B Serine/threonine-protei 97.1 0.099 3.4E-06 54.2 22.9 122 264-401 230-381 (447)
25 1r5m_A SIR4-interacting protei 97.0 0.23 7.8E-06 50.4 24.5 132 242-394 226-362 (425)
26 3jrp_A Fusion protein of prote 97.0 0.31 1.1E-05 48.7 24.9 135 243-393 125-287 (379)
27 2pm9_A Protein WEB1, protein t 97.0 0.15 5.2E-06 52.1 23.1 133 243-395 188-339 (416)
28 3lrv_A PRE-mRNA-splicing facto 97.0 0.065 2.2E-06 54.8 20.2 134 244-394 150-293 (343)
29 4a11_B DNA excision repair pro 96.9 0.28 9.6E-06 49.6 23.8 109 265-394 250-366 (408)
30 3v7d_B Cell division control p 96.9 0.19 6.4E-06 53.0 23.4 127 243-393 290-421 (464)
31 3zwl_B Eukaryotic translation 96.9 0.42 1.4E-05 47.4 25.3 97 243-339 240-346 (369)
32 2aq5_A Coronin-1A; WD40 repeat 96.9 0.092 3.1E-06 54.6 20.8 103 229-339 231-342 (402)
33 1sq9_A Antiviral protein SKI8; 96.9 0.28 9.6E-06 49.9 24.0 113 263-393 189-322 (397)
34 2pm9_A Protein WEB1, protein t 96.9 0.066 2.3E-06 54.8 19.2 131 243-393 136-294 (416)
35 3vl1_A 26S proteasome regulato 96.8 0.11 3.6E-06 53.7 20.5 110 264-393 251-365 (420)
36 3frx_A Guanine nucleotide-bind 96.8 0.25 8.4E-06 50.4 23.0 113 265-393 201-317 (319)
37 3vgz_A Uncharacterized protein 96.8 0.11 3.6E-06 52.0 19.8 261 62-376 40-334 (353)
38 3odt_A Protein DOA1; ubiquitin 96.8 0.17 5.8E-06 49.3 20.8 129 243-394 165-297 (313)
39 1sq9_A Antiviral protein SKI8; 96.8 0.31 1.1E-05 49.6 23.5 88 243-339 258-395 (397)
40 1got_B GT-beta; complex (GTP-b 96.7 0.46 1.6E-05 48.7 24.6 126 243-389 206-339 (340)
41 3sfz_A APAF-1, apoptotic pepti 96.7 0.69 2.4E-05 55.5 29.3 138 243-401 983-1125(1249)
42 3u4y_A Uncharacterized protein 96.7 0.61 2.1E-05 46.5 25.4 118 264-395 179-306 (331)
43 3mkq_A Coatomer beta'-subunit; 96.6 0.42 1.4E-05 54.1 25.3 88 243-339 208-302 (814)
44 1yfq_A Cell cycle arrest prote 96.6 0.66 2.3E-05 46.0 23.8 106 289-401 168-291 (342)
45 1l0q_A Surface layer protein; 96.5 0.57 1.9E-05 47.9 23.1 132 243-392 96-232 (391)
46 3dm0_A Maltose-binding peripla 96.5 0.28 9.6E-06 55.5 22.8 112 265-393 566-693 (694)
47 1k8k_C P40, ARP2/3 complex 41 96.4 0.91 3.1E-05 45.5 26.1 66 265-339 207-274 (372)
48 4ggc_A P55CDC, cell division c 96.4 0.8 2.7E-05 44.8 26.4 91 290-392 220-314 (318)
49 2aq5_A Coronin-1A; WD40 repeat 96.4 0.14 4.6E-06 53.4 18.1 135 243-395 154-301 (402)
50 3bws_A Protein LP49; two-domai 96.4 0.24 8E-06 51.4 19.8 96 242-339 324-432 (433)
51 3ei3_B DNA damage-binding prot 96.4 0.34 1.2E-05 49.6 20.6 126 265-401 209-348 (383)
52 4aow_A Guanine nucleotide-bind 96.3 0.93 3.2E-05 44.8 24.1 113 266-394 221-338 (340)
53 2ovr_B FBW7, F-BOX/WD repeat p 96.3 0.5 1.7E-05 49.8 22.1 138 242-392 298-441 (445)
54 1nir_A Nitrite reductase; hemo 96.3 0.12 4.3E-06 58.1 18.2 256 65-393 181-458 (543)
55 3mmy_A MRNA export factor; mRN 96.3 0.54 1.8E-05 46.6 20.7 143 243-401 151-313 (368)
56 3k26_A Polycomb protein EED; W 96.2 0.76 2.6E-05 45.6 21.6 26 73-98 33-58 (366)
57 4ery_A WD repeat-containing pr 96.2 1.2 4E-05 44.4 25.0 142 243-402 129-278 (312)
58 3jro_A Fusion protein of prote 96.2 0.53 1.8E-05 54.6 23.1 97 290-393 179-285 (753)
59 4gqb_B Methylosome protein 50; 96.1 0.65 2.2E-05 48.7 21.6 90 243-341 237-333 (344)
60 2ynn_A Coatomer subunit beta'; 96.1 1.4 4.9E-05 44.3 23.1 116 265-401 145-268 (304)
61 3dw8_B Serine/threonine-protei 96.0 1.2 4E-05 46.1 22.6 94 230-336 297-443 (447)
62 1pby_B Quinohemoprotein amine 96.0 0.62 2.1E-05 45.8 19.5 59 243-310 260-320 (337)
63 3dsm_A Uncharacterized protein 96.0 1.8 6.2E-05 44.7 26.5 151 242-397 151-306 (328)
64 3ow8_A WD repeat-containing pr 96.0 0.65 2.2E-05 47.6 20.4 127 244-391 187-319 (321)
65 4g56_B MGC81050 protein; prote 95.9 0.41 1.4E-05 49.9 19.0 90 243-341 249-345 (357)
66 2hqs_A Protein TOLB; TOLB, PAL 95.9 0.95 3.2E-05 48.5 22.1 137 242-394 202-345 (415)
67 1pby_B Quinohemoprotein amine 95.9 0.32 1.1E-05 47.9 17.0 88 292-393 220-310 (337)
68 3vgz_A Uncharacterized protein 95.9 1.1 3.9E-05 44.5 21.2 79 241-327 251-330 (353)
69 3sfz_A APAF-1, apoptotic pepti 95.7 0.41 1.4E-05 57.4 20.1 128 243-391 1107-1247(1249)
70 4a11_B DNA excision repair pro 95.6 2.3 7.8E-05 42.9 24.3 93 243-344 166-281 (408)
71 3iz6_a 40S ribosomal protein R 95.4 1.3 4.5E-05 46.2 20.5 135 242-393 227-375 (380)
72 3ei3_B DNA damage-binding prot 95.4 2.9 9.8E-05 42.8 28.6 97 243-339 273-382 (383)
73 3v7d_B Cell division control p 95.2 3.8 0.00013 43.1 24.6 82 243-335 372-458 (464)
74 1vyh_C Platelet-activating fac 95.1 3.7 0.00013 43.4 23.0 115 266-401 240-378 (410)
75 2vdu_B TRNA (guanine-N(7)-)-me 95.0 1.1 3.7E-05 47.7 18.6 133 243-393 220-391 (450)
76 2pbi_B Guanine nucleotide-bind 95.0 4 0.00014 42.2 24.1 126 243-389 220-353 (354)
77 1yfq_A Cell cycle arrest prote 94.9 3.2 0.00011 41.1 22.4 60 29-97 32-93 (342)
78 3vu4_A KMHSV2; beta-propeller 94.9 0.25 8.5E-06 51.4 13.1 108 265-395 63-170 (355)
79 3u4y_A Uncharacterized protein 94.8 3.5 0.00012 41.0 21.0 119 244-374 109-239 (331)
80 3lrv_A PRE-mRNA-splicing facto 94.7 0.78 2.7E-05 46.8 16.0 53 244-304 236-296 (343)
81 3mmy_A MRNA export factor; mRN 94.7 1.7 5.9E-05 43.0 18.0 82 289-375 236-335 (368)
82 1jmx_B Amine dehydrogenase; ox 94.7 0.72 2.5E-05 45.8 15.2 60 242-310 274-335 (349)
83 2ynn_A Coatomer subunit beta'; 94.6 3.3 0.00011 41.7 20.1 36 66-101 59-94 (304)
84 1p22_A F-BOX/WD-repeat protein 94.3 6.4 0.00022 41.5 22.8 88 242-339 275-365 (435)
85 1ri6_A Putative isomerase YBHE 94.1 4.9 0.00017 39.6 21.6 134 243-392 151-307 (343)
86 2vdu_B TRNA (guanine-N(7)-)-me 94.0 7.5 0.00026 41.2 23.2 134 242-391 170-337 (450)
87 3scy_A Hypothetical bacterial 93.9 6.3 0.00022 40.1 26.8 280 28-393 25-337 (361)
88 4e54_B DNA damage-binding prot 93.8 5.4 0.00018 42.3 20.6 77 262-338 346-429 (435)
89 3odt_A Protein DOA1; ubiquitin 93.8 1.6 5.4E-05 42.4 15.3 86 244-339 206-296 (313)
90 1k32_A Tricorn protease; prote 93.8 13 0.00043 44.8 26.1 117 242-374 357-490 (1045)
91 2xzm_R RACK1; ribosome, transl 93.8 6.6 0.00023 40.0 25.3 114 265-394 218-341 (343)
92 3dwl_C Actin-related protein 2 93.8 1.3 4.5E-05 44.9 15.2 94 265-371 151-267 (377)
93 2pbi_B Guanine nucleotide-bind 93.6 6.5 0.00022 40.7 20.4 36 64-99 156-191 (354)
94 3ow8_A WD repeat-containing pr 93.6 4.3 0.00015 41.5 18.8 63 266-337 254-319 (321)
95 3k26_A Polycomb protein EED; W 93.5 6.6 0.00022 38.9 27.0 88 242-338 250-365 (366)
96 3hfq_A Uncharacterized protein 93.3 6.4 0.00022 39.7 19.3 134 243-392 162-316 (347)
97 1k8k_C P40, ARP2/3 complex 41 93.2 6.5 0.00022 39.3 19.1 37 63-99 53-89 (372)
98 3f3f_A Nucleoporin SEH1; struc 93.2 6.5 0.00022 38.1 19.3 38 62-99 110-149 (351)
99 1jmx_B Amine dehydrogenase; ox 93.2 7.2 0.00025 38.5 21.4 55 242-308 124-183 (349)
100 1erj_A Transcriptional repress 93.1 8.6 0.0003 40.2 20.6 35 65-99 126-160 (393)
101 1qks_A Cytochrome CD1 nitrite 93.0 16 0.00054 41.9 25.5 288 13-394 162-478 (567)
102 2ojh_A Uncharacterized protein 92.9 6.6 0.00023 37.2 21.8 134 231-376 98-237 (297)
103 2z3z_A Dipeptidyl aminopeptida 92.6 12 0.00042 41.9 22.2 151 223-392 261-434 (706)
104 1vyh_C Platelet-activating fac 92.5 12 0.00042 39.5 22.3 90 290-391 317-409 (410)
105 4gqb_B Methylosome protein 50; 92.5 12 0.0004 39.1 21.6 128 244-392 193-330 (344)
106 1nr0_A Actin interacting prote 92.3 17 0.00058 40.7 23.7 108 265-394 244-356 (611)
107 1p22_A F-BOX/WD-repeat protein 92.1 11 0.00036 39.8 19.8 51 290-341 355-416 (435)
108 3gre_A Serine/threonine-protei 92.0 10 0.00035 39.4 19.3 88 243-339 192-292 (437)
109 3dsm_A Uncharacterized protein 92.0 9.5 0.00032 39.3 18.9 36 62-98 83-119 (328)
110 2mad_H Methylamine dehydrogena 91.7 16 0.00056 39.0 24.8 56 242-306 297-356 (373)
111 3gre_A Serine/threonine-protei 91.6 3.7 0.00013 42.7 15.5 71 30-100 133-208 (437)
112 2hqs_A Protein TOLB; TOLB, PAL 90.8 9.8 0.00033 40.6 18.1 144 229-391 143-296 (415)
113 1got_B GT-beta; complex (GTP-b 90.8 6.5 0.00022 40.2 16.0 63 265-336 275-340 (340)
114 4e54_B DNA damage-binding prot 90.1 21 0.00072 37.7 21.0 118 265-393 255-387 (435)
115 3pe7_A Oligogalacturonate lyas 89.7 8.2 0.00028 39.2 15.6 155 206-375 22-208 (388)
116 3iz6_a 40S ribosomal protein R 89.4 22 0.00076 36.9 19.4 67 265-341 303-377 (380)
117 4fhn_B Nucleoporin NUP120; pro 89.3 3.3 0.00011 51.1 14.7 101 21-126 75-202 (1139)
118 2oiz_A Aromatic amine dehydrog 89.3 24 0.00081 37.1 22.9 62 30-99 81-146 (361)
119 4aow_A Guanine nucleotide-bind 89.2 18 0.00061 35.6 18.3 65 265-339 261-337 (340)
120 3dwl_C Actin-related protein 2 88.8 7.3 0.00025 39.4 14.4 65 265-338 210-280 (377)
121 2ymu_A WD-40 repeat protein; u 88.8 29 0.00097 37.4 25.3 114 267-403 433-549 (577)
122 2j04_A TAU60, YPL007P, hypothe 88.4 7.1 0.00024 45.8 15.7 119 289-413 200-342 (588)
123 3vu4_A KMHSV2; beta-propeller 88.3 26 0.00088 36.2 22.1 66 265-339 200-271 (355)
124 4g56_B MGC81050 protein; prote 88.2 26 0.0009 36.3 21.3 129 243-393 204-343 (357)
125 3f3f_A Nucleoporin SEH1; struc 88.1 20 0.00067 34.6 24.5 31 66-96 15-45 (351)
126 4h5i_A Guanine nucleotide-exch 87.8 25 0.00084 36.7 18.1 65 266-340 275-344 (365)
127 3jrp_A Fusion protein of prote 87.7 23 0.0008 35.1 20.3 65 265-338 211-286 (379)
128 1erj_A Transcriptional repress 87.1 30 0.001 36.1 18.2 35 67-101 170-204 (393)
129 2ovr_B FBW7, F-BOX/WD repeat p 87.0 32 0.0011 36.0 22.0 89 242-340 338-443 (445)
130 3jro_A Fusion protein of prote 86.5 22 0.00077 41.1 18.5 66 265-339 209-285 (753)
131 4g26_A Pentatricopeptide repea 86.4 3.1 0.0001 46.9 10.9 82 466-570 111-200 (501)
132 4gga_A P55CDC, cell division c 85.6 38 0.0013 35.5 22.8 79 265-351 325-406 (420)
133 3c75_H MADH, methylamine dehyd 85.2 52 0.0018 36.7 20.9 66 29-102 148-218 (426)
134 3q7m_A Lipoprotein YFGL, BAMB; 85.2 1.4 4.7E-05 45.6 6.8 57 734-791 318-374 (376)
135 4ggc_A P55CDC, cell division c 84.6 30 0.001 33.5 20.0 88 244-338 222-314 (318)
136 2xyi_A Probable histone-bindin 84.6 11 0.00038 39.9 13.6 110 265-393 236-353 (430)
137 2ymu_A WD-40 repeat protein; u 83.5 53 0.0018 35.3 25.9 126 265-413 226-356 (577)
138 1ri6_A Putative isomerase YBHE 83.4 25 0.00087 34.4 14.7 115 264-392 87-208 (343)
139 1xfd_A DIP, dipeptidyl aminope 83.4 52 0.0018 36.8 19.0 83 291-374 228-324 (723)
140 4gq2_M Nucleoporin NUP120; bet 82.5 14 0.00047 45.2 14.9 100 21-125 73-199 (950)
141 2z3z_A Dipeptidyl aminopeptida 81.7 7.7 0.00026 43.5 11.5 101 264-375 85-200 (706)
142 2xdw_A Prolyl endopeptidase; a 81.4 80 0.0027 36.0 21.1 74 224-302 340-416 (710)
143 2ojh_A Uncharacterized protein 80.8 15 0.0005 34.8 11.5 128 242-392 21-159 (297)
144 2pm7_B Protein transport prote 79.9 51 0.0017 32.8 23.4 92 290-392 179-284 (297)
145 2oit_A Nucleoporin 214KDA; NH2 79.5 33 0.0011 37.2 15.3 88 243-339 172-278 (434)
146 3pe7_A Oligogalacturonate lyas 78.4 60 0.0021 32.8 23.4 140 242-393 215-382 (388)
147 1nir_A Nitrite reductase; hemo 77.0 1E+02 0.0034 34.6 25.2 38 62-99 221-263 (543)
148 2ecf_A Dipeptidyl peptidase IV 76.7 1E+02 0.0035 34.6 27.6 139 223-376 290-445 (741)
149 2ecf_A Dipeptidyl peptidase IV 73.8 28 0.00095 39.2 13.1 102 264-376 112-229 (741)
150 3bg1_A Protein SEC13 homolog; 73.2 81 0.0028 31.7 22.1 90 290-392 188-292 (316)
151 3sjl_D Methylamine dehydrogena 72.6 1.2E+02 0.0041 33.5 20.1 66 29-102 108-178 (386)
152 3q7m_A Lipoprotein YFGL, BAMB; 71.6 8.7 0.0003 39.6 7.8 54 733-789 52-126 (376)
153 1b89_A Protein (clathrin heavy 70.5 9.8 0.00034 43.2 8.4 218 466-715 154-398 (449)
154 3hfq_A Uncharacterized protein 68.7 67 0.0023 32.2 13.3 113 265-392 145-270 (347)
155 1jof_A Carboxy-CIS,CIS-muconat 68.3 1.1E+02 0.0038 31.4 20.3 34 64-98 41-75 (365)
156 2xpi_A Anaphase-promoting comp 68.0 16 0.00056 39.3 9.2 21 466-486 345-365 (597)
157 4a5s_A Dipeptidyl peptidase 4 67.1 1.8E+02 0.0062 33.3 27.2 144 223-376 263-436 (740)
158 2oiz_A Aromatic amine dehydrog 65.5 1.4E+02 0.0046 31.3 19.9 57 29-99 30-96 (361)
159 1z68_A Fibroblast activation p 64.3 1.9E+02 0.0064 32.5 22.5 143 222-376 255-430 (719)
160 2xdw_A Prolyl endopeptidase; a 62.3 2.1E+02 0.0073 32.5 22.1 136 230-376 244-400 (710)
161 2iwa_A Glutamine cyclotransfer 60.2 1.1E+02 0.0037 32.1 13.4 96 62-164 20-135 (266)
162 1z68_A Fibroblast activation p 58.0 40 0.0014 38.0 10.3 133 243-376 36-189 (719)
163 2ho1_A Type 4 fimbrial biogene 56.3 48 0.0016 31.2 9.1 51 466-516 111-169 (252)
164 1nr0_A Actin interacting prote 55.2 2.6E+02 0.0088 31.2 23.1 35 64-98 326-360 (611)
165 2bkl_A Prolyl endopeptidase; m 55.0 1.5E+02 0.0051 33.7 14.5 142 227-376 77-247 (695)
166 3fm0_A Protein CIAO1; WDR39,SG 55.0 1.9E+02 0.0063 29.5 26.8 29 67-95 66-94 (345)
167 2ad6_A Methanol dehydrogenase 54.6 22 0.00074 40.6 7.5 30 735-764 317-346 (571)
168 1pjx_A Dfpase, DIISOPROPYLFLUO 54.3 1.6E+02 0.0056 28.6 22.0 34 63-97 18-59 (314)
169 3hxj_A Pyrrolo-quinoline quino 53.6 24 0.00083 34.8 6.8 24 734-758 147-170 (330)
170 1yr2_A Prolyl oligopeptidase; 52.5 52 0.0018 37.8 10.3 103 265-375 167-287 (741)
171 1xfd_A DIP, dipeptidyl aminope 50.9 2E+02 0.0068 32.1 14.4 119 243-372 91-271 (723)
172 2xpi_A Anaphase-promoting comp 50.9 40 0.0014 36.3 8.5 112 466-577 447-582 (597)
173 2xzm_R RACK1; ribosome, transl 50.8 78 0.0027 32.1 10.2 75 721-795 75-149 (343)
174 1qks_A Cytochrome CD1 nitrite 50.7 3.3E+02 0.011 31.1 20.6 60 29-99 217-281 (567)
175 1kv9_A Type II quinohemoprotei 50.1 27 0.00091 40.5 7.4 54 733-789 65-140 (668)
176 3iuj_A Prolyl endopeptidase; h 48.9 70 0.0024 36.7 10.6 106 265-375 133-253 (693)
177 1kb0_A Quinohemoprotein alcoho 48.9 26 0.0009 40.7 7.2 55 733-790 76-152 (677)
178 2gop_A Trilobed protease; beta 48.8 67 0.0023 32.0 9.2 122 241-376 83-235 (347)
179 4g26_A Pentatricopeptide repea 48.6 35 0.0012 38.4 7.9 85 463-570 29-130 (501)
180 3hym_B Cell division cycle pro 47.9 70 0.0024 31.0 9.0 32 683-715 283-314 (330)
181 1flg_A Protein (quinoprotein e 47.6 33 0.0011 39.3 7.5 31 734-764 336-366 (582)
182 3hxj_A Pyrrolo-quinoline quino 46.8 39 0.0013 33.3 7.1 52 733-790 186-248 (330)
183 1yiq_A Quinohemoprotein alcoho 46.6 26 0.00088 40.9 6.6 35 729-763 481-515 (689)
184 1ews_A RK-1 defensin, alpha-de 46.4 6.9 0.00024 28.9 1.1 10 141-150 23-32 (32)
185 3hym_B Cell division cycle pro 46.0 43 0.0015 32.4 7.1 83 433-517 21-120 (330)
186 2hz6_A Endoplasmic reticulum t 45.7 26 0.0009 37.0 6.0 57 734-793 9-66 (369)
187 2q7f_A YRRB protein; TPR, prot 45.3 41 0.0014 31.2 6.6 111 466-576 97-224 (243)
188 2vxg_A LD41624, GE-1, CG6181-P 45.3 29 0.001 33.6 5.7 40 829-871 4-43 (139)
189 2oaj_A Protein SNI1; WD40 repe 44.8 1.1E+02 0.0037 36.8 11.6 107 266-394 23-130 (902)
190 2be1_A Serine/threonine-protei 44.7 41 0.0014 36.6 7.4 62 733-794 9-75 (339)
191 2xcb_A PCRH, regulatory protei 43.6 31 0.0011 30.5 5.3 20 467-486 25-44 (142)
192 4a5s_A Dipeptidyl peptidase 4 42.9 2.6E+02 0.009 32.0 14.1 112 224-340 21-142 (740)
193 3as5_A MAMA; tetratricopeptide 42.7 94 0.0032 26.9 8.2 28 543-570 142-169 (186)
194 3frx_A Guanine nucleotide-bind 42.7 1.1E+02 0.0038 30.8 9.8 74 721-794 64-137 (319)
195 3azo_A Aminopeptidase; POP fam 41.9 2.6E+02 0.009 30.9 13.5 60 313-376 132-208 (662)
196 2hes_X YDR267CP; beta-propelle 41.3 2.9E+02 0.01 27.8 23.0 66 265-339 158-230 (330)
197 2gop_A Trilobed protease; beta 40.9 1.4E+02 0.0046 29.8 10.0 95 226-328 21-122 (347)
198 3scy_A Hypothetical bacterial 40.8 3E+02 0.01 27.7 17.4 117 266-394 55-187 (361)
199 3c5m_A Oligogalacturonate lyas 40.1 3E+02 0.01 27.5 12.5 148 229-399 92-279 (396)
200 1kb0_A Quinohemoprotein alcoho 39.6 50 0.0017 38.4 7.5 56 734-789 128-203 (677)
201 2j04_B YDR362CP, TAU91; beta p 39.4 4.5E+02 0.015 29.4 20.6 135 241-397 285-432 (524)
202 3mbr_X Glutamine cyclotransfer 39.4 3.5E+02 0.012 28.1 14.3 63 30-105 43-106 (243)
203 2ad6_A Methanol dehydrogenase 39.1 51 0.0017 37.5 7.4 56 734-789 115-189 (571)
204 1zi0_A DNA gyrase subunit A; b 39.1 1.7E+02 0.0059 30.8 11.0 33 61-93 194-226 (307)
205 3uc1_A DNA gyrase subunit A; D 39.0 2E+02 0.0069 30.8 11.6 33 61-93 196-228 (327)
206 1w6s_A Methanol dehydrogenase 38.5 47 0.0016 38.5 7.1 30 735-764 324-353 (599)
207 3mkr_A Coatomer subunit epsilo 38.1 59 0.002 33.0 7.0 104 466-570 107-225 (291)
208 3no2_A Uncharacterized protein 37.0 71 0.0024 32.4 7.4 26 736-761 178-203 (276)
209 2mad_H Methylamine dehydrogena 36.5 4.1E+02 0.014 28.1 20.6 49 290-338 297-349 (373)
210 2vqe_B 30S ribosomal protein S 36.3 20 0.00067 38.1 3.2 58 577-652 143-201 (256)
211 3qou_A Protein YBBN; thioredox 35.9 1.2E+02 0.0041 30.4 8.8 69 416-487 100-178 (287)
212 3fm0_A Protein CIAO1; WDR39,SG 35.9 3.6E+02 0.012 27.3 25.8 63 265-338 155-224 (345)
213 3fvz_A Peptidyl-glycine alpha- 35.9 3.6E+02 0.012 27.3 16.7 37 61-98 22-83 (329)
214 1suu_A DNA gyrase subunit A; t 35.5 2.1E+02 0.0071 30.2 10.9 76 61-137 45-134 (312)
215 3no2_A Uncharacterized protein 35.5 59 0.002 33.0 6.5 58 735-795 48-108 (276)
216 3o4h_A Acylamino-acid-releasin 35.5 4.7E+02 0.016 28.5 14.5 131 225-371 70-210 (582)
217 1yiq_A Quinohemoprotein alcoho 35.4 64 0.0022 37.6 7.5 30 734-763 121-150 (689)
218 2fo7_A Synthetic consensus TPR 35.2 1.1E+02 0.0039 24.7 7.1 27 544-570 102-128 (136)
219 1k32_A Tricorn protease; prote 34.8 6.6E+02 0.023 30.0 26.4 134 223-374 207-355 (1045)
220 3dm0_A Maltose-binding peripla 34.7 1.1E+02 0.0036 34.7 9.0 69 721-789 429-497 (694)
221 1zi0_A DNA gyrase subunit A; b 34.7 1.8E+02 0.006 30.7 10.2 76 61-137 93-177 (307)
222 3spa_A Mtrpol, DNA-directed RN 34.2 61 0.0021 40.9 7.3 53 466-518 133-195 (1134)
223 3vdp_A Recombination protein R 33.7 13 0.00046 38.5 1.4 89 495-585 42-172 (212)
224 4h5i_A Guanine nucleotide-exch 33.3 1.8E+02 0.006 30.2 9.8 73 721-793 268-341 (365)
225 1wao_1 Serine/threonine protei 32.9 1.1E+02 0.0039 33.6 8.7 44 589-643 210-255 (477)
226 3l6v_A GYRA, DNA gyrase subuni 32.0 1.7E+02 0.0059 32.0 9.9 63 73-137 245-317 (370)
227 3no0_A DNA gyrase subunit A; D 31.5 1.7E+02 0.0058 30.5 9.3 74 719-795 67-146 (276)
228 3gyz_A Chaperone protein IPGC; 31.5 1.1E+02 0.0036 28.6 7.1 82 466-570 42-129 (151)
229 2be1_A Serine/threonine-protei 30.6 1E+02 0.0035 33.5 7.7 32 72-103 8-39 (339)
230 1wp5_A Topoisomerase IV; broke 30.5 2.4E+02 0.0082 30.1 10.5 74 62-137 91-175 (323)
231 3o4h_A Acylamino-acid-releasin 30.4 4.2E+02 0.014 28.9 12.6 119 265-401 69-192 (582)
232 1kv9_A Type II quinohemoprotei 30.4 67 0.0023 37.2 6.6 35 730-764 465-499 (668)
233 1zvu_A Topoisomerase IV subuni 30.1 2.6E+02 0.0088 33.8 11.4 67 724-795 462-533 (716)
234 2oit_A Nucleoporin 214KDA; NH2 29.7 1.3E+02 0.0043 32.6 8.3 72 721-792 148-220 (434)
235 4gq1_A NUP37; propeller, trans 29.4 5E+02 0.017 26.9 19.7 50 290-339 338-389 (393)
236 2y4t_A DNAJ homolog subfamily 29.3 82 0.0028 32.4 6.4 29 542-570 174-202 (450)
237 2pl2_A Hypothetical conserved 29.3 46 0.0016 31.8 4.2 28 543-570 149-176 (217)
238 1ouv_A Conserved hypothetical 29.3 1.5E+02 0.0053 28.5 8.0 86 466-561 44-146 (273)
239 3mkq_B Coatomer subunit alpha; 28.3 97 0.0033 31.1 6.5 76 830-911 10-112 (177)
240 2vgx_A Chaperone SYCD; alterna 28.1 93 0.0032 28.2 5.9 21 466-486 27-47 (148)
241 1zvt_A Topoisomerase IV subuni 27.7 1.2E+02 0.0041 31.4 7.3 33 61-93 82-114 (256)
242 2hes_X YDR267CP; beta-propelle 26.7 5E+02 0.017 26.0 25.7 50 290-339 220-280 (330)
243 3pbp_A Nucleoporin NUP82; beta 26.5 3E+02 0.01 31.5 10.8 94 15-135 75-188 (452)
244 2lni_A Stress-induced-phosphop 26.4 1.2E+02 0.0042 24.9 5.9 88 466-576 22-115 (133)
245 3s9j_A Member of DUF4221 famil 26.4 1.7E+02 0.0057 32.3 8.5 84 53-138 15-122 (369)
246 2r5s_A Uncharacterized protein 26.1 1.6E+02 0.0053 26.8 7.1 48 437-486 9-66 (176)
247 3k9i_A BH0479 protein; putativ 26.0 1E+02 0.0036 26.1 5.5 20 466-485 33-52 (117)
248 1flg_A Protein (quinoprotein e 26.0 52 0.0018 37.7 4.6 35 730-764 493-527 (582)
249 3rkv_A Putative peptidylprolyl 25.6 94 0.0032 27.7 5.4 20 466-485 69-88 (162)
250 1yr2_A Prolyl oligopeptidase; 25.5 8E+02 0.027 28.0 23.5 135 231-376 280-427 (741)
251 2hz6_A Endoplasmic reticulum t 25.5 56 0.0019 34.5 4.5 56 731-789 127-196 (369)
252 1w6s_A Methanol dehydrogenase 25.3 54 0.0018 38.0 4.6 35 730-764 480-514 (599)
253 2oaj_A Protein SNI1; WD40 repe 25.2 2.1E+02 0.0073 34.2 9.8 79 721-801 57-135 (902)
254 3vtx_A MAMA; tetratricopeptide 25.0 48 0.0016 29.9 3.3 27 544-570 106-132 (184)
255 3dss_B Geranylgeranyl transfer 25.0 1.9E+02 0.0065 31.2 8.5 105 438-591 24-131 (331)
256 1zvt_A Topoisomerase IV subuni 24.8 1.1E+02 0.0037 31.7 6.4 61 735-795 3-63 (256)
257 1i2t_A HYD protein; four alpha 24.7 8.4 0.00029 32.9 -1.6 29 624-654 13-42 (61)
258 4abn_A Tetratricopeptide repea 24.4 1.3E+02 0.0045 32.7 7.3 39 453-491 120-169 (474)
259 3l6v_A GYRA, DNA gyrase subuni 24.4 3.3E+02 0.011 29.8 10.4 74 61-137 97-181 (370)
260 2h4p_B MENT, heterochromatin-a 24.0 54 0.0018 24.3 2.8 19 746-764 13-31 (34)
261 2y4t_A DNAJ homolog subfamily 23.9 2.2E+02 0.0076 29.2 8.5 105 466-570 100-236 (450)
262 1wp5_A Topoisomerase IV; broke 23.9 1.7E+02 0.0056 31.4 7.7 60 735-795 107-174 (323)
263 3e5z_A Putative gluconolactona 23.2 2.1E+02 0.0072 28.1 7.8 21 735-757 229-249 (296)
264 3no0_A DNA gyrase subunit A; D 23.0 2.5E+02 0.0086 29.2 8.7 32 62-93 165-196 (276)
265 1hle_B Horse leukocyte elastas 22.8 59 0.002 23.6 2.8 19 746-764 12-30 (31)
266 2xn6_B Thyroxine-binding globu 22.8 58 0.002 24.4 2.8 20 746-765 13-32 (35)
267 3ndd_B Alpha-1-antitrypsin; se 22.8 62 0.0021 24.4 3.0 19 747-765 15-33 (36)
268 3nok_A Glutaminyl cyclase; bet 22.2 6.9E+02 0.024 26.5 11.9 120 26-164 71-210 (268)
269 3uc1_A DNA gyrase subunit A; D 22.2 2.7E+02 0.0091 29.9 9.0 31 62-92 145-175 (327)
270 1elw_A TPR1-domain of HOP; HOP 22.0 1.2E+02 0.004 24.2 4.9 88 466-576 10-103 (118)
271 2bkl_A Prolyl endopeptidase; m 21.9 9E+02 0.031 27.3 20.0 71 225-302 325-399 (695)
272 2ghs_A AGR_C_1268P; regucalcin 21.9 5.9E+02 0.02 25.8 11.2 78 290-369 70-147 (326)
273 3iuj_A Prolyl endopeptidase; h 21.7 9.3E+02 0.032 27.4 21.9 103 230-339 292-405 (693)
274 1pjx_A Dfpase, DIISOPROPYLFLUO 21.4 3E+02 0.01 26.7 8.5 68 733-801 235-305 (314)
275 2kck_A TPR repeat; tetratricop 21.1 3E+02 0.01 21.6 7.4 92 431-559 3-107 (112)
276 3f7f_A Nucleoporin NUP120; nuc 21.0 2.8E+02 0.0094 33.6 9.5 75 48-126 89-190 (729)
277 1w3b_A UDP-N-acetylglucosamine 21.0 1.4E+02 0.0049 30.2 6.3 84 431-516 30-129 (388)
278 4afx_B Protein Z dependent pro 20.9 66 0.0023 24.2 2.8 19 747-765 15-33 (36)
279 1suu_A DNA gyrase subunit A; t 20.6 3.5E+02 0.012 28.5 9.4 32 62-93 99-133 (312)
280 2h4p_B MENT, heterochromatin-a 20.6 69 0.0023 23.7 2.8 18 88-105 15-32 (34)
281 2xn6_B Thyroxine-binding globu 20.4 68 0.0023 24.0 2.8 18 88-105 15-32 (35)
282 1as4_B Antichymotrypsin, ACT; 20.2 57 0.0019 24.7 2.3 20 746-765 15-34 (37)
283 2vq2_A PILW, putative fimbrial 20.2 2.4E+02 0.0081 25.4 7.0 85 466-571 48-139 (225)
No 1
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=100.00 E-value=5.7e-185 Score=1669.43 Aligned_cols=498 Identities=72% Similarity=1.095 Sum_probs=487.6
Q ss_pred ccceeeeccccccccCCcccccceeeecceEEEEEeccCCCceEEEEECCCCCCCcccccCccccccCCCccEEEEeccC
Q psy1644 202 EFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKA 281 (923)
Q Consensus 202 ~~~~e~~~Lt~lGI~~~si~F~~lTmESDkyICVRE~~~~~~qVvIVDL~n~~~v~Rrpi~ADSAIMnP~~~IIALra~~ 281 (923)
.|+ |+++|+++||+|++|+|++|||||||||||||++|+++|||||||.||++|+||||+||||||||+++|||||
T Consensus 8 ~~~-e~~~L~~lGi~~~~i~f~~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALr--- 83 (1630)
T 1xi4_A 8 RFQ-EHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALK--- 83 (1630)
T ss_pred ehh-hhhhhhhcCCCcccccccceeeecCceEEEEecCCCCceEEEEECCCCCCcccccccchhhccCCCcceEEEe---
Confidence 344 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCeEEEEecccccccccccCCCceeEEEeccCCeEEEEecCeEEEEeccCCCCchhhhhcccCCCCCeeEee
Q psy1644 282 GNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINY 361 (923)
Q Consensus 282 ~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis~~tLglVT~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInY 361 (923)
+|++|||||||+|+|||+|+|+|+|+||||||+++|||||+|+||||+|+|+++|+||||||++|+|||||||
T Consensus 84 -------ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY 156 (1630)
T 1xi4_A 84 -------AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINY 156 (1630)
T ss_pred -------cCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEe
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCeEEEEeeecccccccceeeeccccccccccccc------------------------c---------------
Q psy1644 362 RTDPKQTWLLLIGISAVSNRVVGAMQLYSVERKCSQPIEE------------------------K--------------- 402 (923)
Q Consensus 362 r~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~~SQ~iEG------------------------k--------------- 402 (923)
|+|+++|||+|+||++++|+|+|+|||||+||++||+||| |
T Consensus 157 ~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~ 236 (1630)
T 1xi4_A 157 RTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 236 (1630)
T ss_pred eeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCC
Confidence 9999999999999999999999999999999999999999 0
Q ss_pred ---------e----------------------------------------------------------------------
Q psy1644 403 ---------K---------------------------------------------------------------------- 403 (923)
Q Consensus 403 ---------~---------------------------------------------------------------------- 403 (923)
|
T Consensus 237 ~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~ 316 (1630)
T 1xi4_A 237 PTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 316 (1630)
T ss_pred ccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceE
Confidence 0
Q ss_pred ----------------------------------------------------------------eEEeccCCCccccCHH
Q psy1644 404 ----------------------------------------------------------------SRVAANAPKGILRTPQ 419 (923)
Q Consensus 404 ----------------------------------------------------------------AkvAA~SP~giLRt~e 419 (923)
|++||+||+|+||||+
T Consensus 317 ~vnr~G~vl~v~v~~~~iv~yi~~~l~~~~la~~~a~r~~lpGad~l~~~~F~~l~~~g~y~~AA~~aa~sp~giLRt~~ 396 (1630)
T 1xi4_A 317 GVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPD 396 (1630)
T ss_pred EEcCCceEEEEEEccchhhhhHhhccCCHHHHHHHHHhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHH
Confidence 9999999999999999
Q ss_pred HHHhhhcCCCCCCCCchHHHHHHHHHhcCCCCcccccccchhhHHH----------------------------------
Q psy1644 420 TIVKFQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCRPVLAQ---------------------------------- 465 (923)
Q Consensus 420 TI~rFK~vp~~pGq~sPLL~YF~~LL~~g~LN~~ESlEL~rpVL~Q---------------------------------- 465 (923)
||+|||++|++|||+||||+||++||++|+||++||+||+||||+|
T Consensus 397 ti~rfk~~~~~pgq~~pll~YF~~ll~~g~Ln~~eSlEl~r~vl~q~r~~lle~Wl~e~KL~~SEeLGDlv~~~d~~lAl 476 (1630)
T 1xi4_A 397 TIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLAL 476 (1630)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhchHHHHHHHHHhCCccccHHHHHHHHhcChHHHH
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred -----------HHHHHHHhcChhHHHHHHHHhCCCccHHHHHHHHHhcCCchhhHHHHhhhcCCCCCcCccc--------
Q psy1644 466 -----------VIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQDDEPLADINQ-------- 526 (923)
Q Consensus 466 -----------Vi~clae~Gqfdkiv~Y~~~vgytpDy~~LL~~i~~~nP~~a~efA~~L~~~~~pl~di~~-------- 526 (923)
||+||||+|||+||++||+++||||||++||++++|+||++|++||++|+++++|++|+++
T Consensus 477 ~iY~~a~~~~Kvi~~l~~~gq~~ki~~Y~~~~~~~pDy~~ll~~~~~~~P~~~~~fa~~L~~~~~p~~d~~~ivd~f~~~ 556 (1630)
T 1xi4_A 477 SVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDEEPLADITQIVDVFMEY 556 (1630)
T ss_pred HHHHhcCCcHHHHHHHHHhCCHHHHHHHHhccCCCccHHHHHHHHhhcChHHHHHHHHHHhcCCCCccCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999889999987
Q ss_pred --------------------------------------------------------------------------------
Q psy1644 527 -------------------------------------------------------------------------------- 526 (923)
Q Consensus 527 -------------------------------------------------------------------------------- 526 (923)
T Consensus 557 ~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~di 636 (1630)
T 1xi4_A 557 NLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDI 636 (1630)
T ss_pred CcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHH
Confidence
Q ss_pred ----------------------------------------------------------------------cchhhhhhhc
Q psy1644 527 ----------------------------------------------------------------------SYEGLFYFLG 536 (923)
Q Consensus 527 ----------------------------------------------------------------------~~egLyy~Lg 536 (923)
++||||||||
T Consensus 637 kR~~~~~~~~~~~~l~~~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~ 716 (1630)
T 1xi4_A 637 KRAVVHTHLLNPEWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLG 716 (1630)
T ss_pred HHHhhccCcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHH
Confidence 5899999999
Q ss_pred ccccccCCcchhhHHHHHHHhcCChhhhHHhhhcCCccChHHHHhHHhhccCCCCCceEEeeccccchhHHHHHHHhcCc
Q psy1644 537 SIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNL 616 (923)
Q Consensus 537 sivn~s~d~dVhfKYIeAA~k~gq~~EvERicresn~YdpekvKnfLKeakL~d~~PLI~VCDrf~fV~dLv~YLY~n~~ 616 (923)
||||+|+||||||||||||+|+||++|||||||||||||||||||||||||||||+||||||||||||||||+|||+|++
T Consensus 717 siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~ 796 (1630)
T 1xi4_A 717 SIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNL 796 (1630)
T ss_pred hhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hheehhhhhccCccccceeee-eccccCCHHHhhhhhccCcchhhhHHhhhccccccchhhHHHHH-hhcchhHHHHHHH
Q psy1644 617 QKYIEIYVQKGRKHLLEKWLK-EEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLYL-YRNNLQKYIEIYV 694 (923)
Q Consensus 617 ~k~IEvYvqkvNp~~tP~Vvg-LlD~dc~E~~Ik~LL~sv~~l~~~~~v~~~~~~~~pv~~Lv~ev-~RnrL~kll~p~L 694 (923)
+||||+|||||||++||+||| |||+|||||+||+||++| +++||++|||+|| ||||| |||+|||
T Consensus 797 ~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v-------------~~~~~~~~lv~~~ekrnrL-kll~p~L 862 (1630)
T 1xi4_A 797 QKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVV-------------RGQFSTDELVAEVEKRNRL-KLLLPWL 862 (1630)
T ss_pred hhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHh-------------ccCCCHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999999999 999999999999999997 8999999999999 69999 9999999
Q ss_pred HHHHHhhcccchhhhHHHHhH---hcCccceee
Q psy1644 695 QKIRIKIKQSRFVHDLVLYLY---RNNLQKYIE 724 (923)
Q Consensus 695 E~~~~~g~q~~~v~nalakiy---~~~~~~~~~ 724 (923)
|+|++||+|||++|||||||| +++|++|+.
T Consensus 863 E~~~~~g~~~~~~hnalakiyid~n~npe~fL~ 895 (1630)
T 1xi4_A 863 EARIHEGCEEPATHNALAKIYIDSNNNPERFLR 895 (1630)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhccCCCHHHHhh
Confidence 999999999999999999999 666888764
No 2
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=100.00 E-value=3.5e-124 Score=1038.66 Aligned_cols=416 Identities=64% Similarity=0.953 Sum_probs=360.0
Q ss_pred ccceeeeccccccccCCcccccceeeecceEEEEEeccCCCceEEEEECCCCCCCcccccCccccccCCCccEEEEeccC
Q psy1644 202 EFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKA 281 (923)
Q Consensus 202 ~~~~e~~~Lt~lGI~~~si~F~~lTmESDkyICVRE~~~~~~qVvIVDL~n~~~v~Rrpi~ADSAIMnP~~~IIALra~~ 281 (923)
.|+ |+++|+++||+|++|+|+++||||||||||||+.++++||+||||+||++|+||||+||||||||++||||||
T Consensus 8 ~~~-e~~~L~~lGi~~~~i~f~~~TmESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~iiALr--- 83 (494)
T 1bpo_A 8 RFQ-EHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALK--- 83 (494)
T ss_dssp EEE-EEEEGGGGTCCTTSCSTTTEEEEETTEEEEEECCTTCCEEEEEETTSTTSCEEEECCCSEEEECSSSSCEEEE---
T ss_pred eeE-eeechhhcCCCccccccceeeeecCceEEEEecCCCCCeEEEEECCCCCcceecccccceeeeCCCCcEEEEe---
Confidence 344 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCeEEEEecccccccccccCCCceeEEEeccCCeEEEEecCeEEEEeccCCCCchhhhhcccCCCCCeeEee
Q psy1644 282 GNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINY 361 (923)
Q Consensus 282 ~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis~~tLglVT~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInY 361 (923)
+|++|||||||+|+|||+|+|+|+|+||||||+++|||||+++||||+|+|+++|+||||||++|+|||||||
T Consensus 84 -------ag~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY 156 (494)
T 1bpo_A 84 -------AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINY 156 (494)
T ss_dssp -------ETTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEE
T ss_pred -------cCCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCeEEEEeeecccccccceeeecccccccccccccceeEEeccCCCccccCHHHHHhhhcCCCCCCCCchHHHHH
Q psy1644 362 RTDPKQTWLLLIGISAVSNRVVGAMQLYSVERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYF 441 (923)
Q Consensus 362 r~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~~SQ~iEGk~AkvAA~SP~giLRt~eTI~rFK~vp~~pGq~sPLL~YF 441 (923)
|+|+++|||+|+||++++++|+|+|||||+||++||+|||++|.+|--- .+|.+.|-
T Consensus 157 ~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~-------------------~~g~~~~~---- 213 (494)
T 1bpo_A 157 RTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFK-------------------MEGNAEES---- 213 (494)
T ss_dssp EECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEE-------------------CTTCSSEE----
T ss_pred EECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEe-------------------cCCCCCCc----
Confidence 9999999999999999999999999999999999999999998886211 22333221
Q ss_pred HHHHhcCCCCcccccccchhhHHHHHHHHHHhcChhHHHHHHHHhCCCccHHHHHHHHHhcCCchhhHHHHhhhcCCCCC
Q psy1644 442 GILLDHGKLNKHESLELCRPVLAQVIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQDDEPL 521 (923)
Q Consensus 442 ~~LL~~g~LN~~ESlEL~rpVL~QVi~clae~Gqfdkiv~Y~~~vgytpDy~~LL~~i~~~nP~~a~efA~~L~~~~~pl 521 (923)
. +.|||+++. .+
T Consensus 214 -~-----------------------lf~fa~r~~-----------------------------~g--------------- 225 (494)
T 1bpo_A 214 -T-----------------------LFCFAVRGQ-----------------------------AG--------------- 225 (494)
T ss_dssp -E-----------------------EEEEEECST-----------------------------TC---------------
T ss_pred -e-----------------------EEEEEEecC-----------------------------CC---------------
Confidence 0 114443321 00
Q ss_pred cCccccchhhhhhhcccccccCCcchhhHHHHHHHhcCChhhhHHhhhcCCccChHHHHhHHhhccCCCCCceEEeeccc
Q psy1644 522 ADINQSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVCDRF 601 (923)
Q Consensus 522 ~di~~~~egLyy~Lgsivn~s~d~dVhfKYIeAA~k~gq~~EvERicresn~YdpekvKnfLKeakL~d~~PLI~VCDrf 601 (923)
.++| +
T Consensus 226 -----------------------~kLh------------i---------------------------------------- 230 (494)
T 1bpo_A 226 -----------------------GKLH------------I---------------------------------------- 230 (494)
T ss_dssp -----------------------CEEE------------E----------------------------------------
T ss_pred -----------------------cEEE------------E----------------------------------------
Confidence 0000 0
Q ss_pred cchhHHHHHHHhcCchheehhhhhccCccccceeee-eccccCCHHHhhhhhccCcchhhhHHhhhccccccchhhHHHH
Q psy1644 602 DFVHDLVLYLYRNNLQKYIEIYVQKGRKHLLEKWLK-EEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLY 680 (923)
Q Consensus 602 ~fV~dLv~YLY~n~~~k~IEvYvqkvNp~~tP~Vvg-LlD~dc~E~~Ik~LL~sv~~l~~~~~v~~~~~~~~pv~~Lv~e 680 (923)
||+.-+ |...|..-. -.|+--
T Consensus 231 ------------------~Ei~~~---~~~~~~f~kk~vdv~f------------------------------------- 252 (494)
T 1bpo_A 231 ------------------IEVGTP---PTGNQPFPKKAVDVFF------------------------------------- 252 (494)
T ss_dssp ------------------EECSCC---CTTCCCCCCEEEECCC-------------------------------------
T ss_pred ------------------EEcCCC---ccCCCCccceeeeeeC-------------------------------------
Confidence 111000 000000000 000000
Q ss_pred HhhcchhHHHHHHHHHHHHhhcccchhhhHHHHhHhcCccceeeeeeeeccccccEEEEEeccceEEEEecCCcceeeee
Q psy1644 681 LYRNNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLYRNNLQKYIEIYVQKVSAKYDVVYLITKFGYIHVYDIETATCIYMN 760 (923)
Q Consensus 681 v~RnrL~kll~p~LE~~~~~g~q~~~v~nalakiy~~~~~~~~~i~~~qvS~KyGvIyvITK~GflhlyDleTgt~Iy~n 760 (923)
-+...-+||+++| ||+|||+||||||||||||||+|||+|||||
T Consensus 253 -----------------------------------ppe~~~DFPvamq-vs~kygviyviTK~G~i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 253 -----------------------------------PPEAQNDFPVAMQ-ISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (494)
T ss_dssp -----------------------------------CTTSTTCCEEEEE-EETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred -----------------------------------CcccccCceeEEE-ecccCCEEEEEecCceEEEEecccceeeeee
Confidence 1112467888866 9999999999999999999999999999999
Q ss_pred cccCCceEEeeccCCCCcEEEEcCCCeEEEEEecCCcccccccccCCCHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCc
Q psy1644 761 RISSDTIFVTAPHEATGGIIGVNRKGQVLSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQ 840 (923)
Q Consensus 761 RIS~dtIFvta~~~~t~Gii~VNrkGqVL~V~Ide~~iVpYI~~~L~n~~LA~kLA~R~~LPGAddLf~~qFn~l~~~G~ 840 (923)
|||+||||+||++++++||+||||+||||+|+|||++|||||+++|+|++||++||+|+||||||+||++|||+||++||
T Consensus 297 rIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivpyi~~~l~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~ 376 (494)
T 1bpo_A 297 RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGN 376 (494)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHHHHHHTTCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTC
T ss_pred cccCCceEEecccCCCCcEEEEccCceEEEEEEccccchhhhhhccCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh--cCChhHHHHHHHhccc------------C--------------------------ChHHHHhHHhhcc
Q psy1644 841 YSEAAKAACK--TGQIKEVERICRESNC------------Y--------------------------NAERVKNFLKEAK 880 (923)
Q Consensus 841 y~eAAk~A~k--tg~i~e~eri~r~~~~------------y--------------------------~~~~vk~~l~~~k 880 (923)
|++||++|+. .|-+|+.|+|.|+.+. | +.+.+++||+|.|
T Consensus 377 y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~Ln~~ESlEl~r~vL~q~r~~llekWl~e~K 456 (494)
T 1bpo_A 377 YSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDK 456 (494)
T ss_dssp HHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCccchHHhhHHhHHHHhccHHHHHHHHHhcCC
Confidence 9999999996 4569999999999885 2 7889999999999
Q ss_pred cCCCcceE
Q psy1644 881 LTDQLPLI 888 (923)
Q Consensus 881 l~~~~~l~ 888 (923)
|+-+++|.
T Consensus 457 L~~SEeLG 464 (494)
T 1bpo_A 457 LECSEELG 464 (494)
T ss_dssp SCCCHHHH
T ss_pred ccccHHhH
Confidence 99999886
No 3
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=100.00 E-value=2.6e-116 Score=949.08 Aligned_cols=356 Identities=68% Similarity=1.011 Sum_probs=298.2
Q ss_pred ccceeeeccccccccCCcccccceeeecceEEEEEeccCCCceEEEEECCCCCCCcccccCccccccCCCccEEEEeccC
Q psy1644 202 EFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKA 281 (923)
Q Consensus 202 ~~~~e~~~Lt~lGI~~~si~F~~lTmESDkyICVRE~~~~~~qVvIVDL~n~~~v~Rrpi~ADSAIMnP~~~IIALra~~ 281 (923)
+|+ |++||+++||+|++|+|+++||||||||||||+.++++||+||||+|+++|+||||+||||||||+++|||||
T Consensus 9 ~~~-e~~~L~~lGI~~~~i~f~~lTmESDkyicVrE~~~~~~~VvIiDl~n~~~~~Rrpi~AdsAIMnP~~~ViALr--- 84 (365)
T 2xzh_A 9 RFQ-EHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALK--- 84 (365)
T ss_dssp EEE-EEEEGGGGTCCGGGCSTTTEEEEETTEEEEEEEETTEEEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEE---
T ss_pred eEE-EeeehhhcCCCccccccceeeeecCceEEEEecCCCCCEEEEEECCCCCCccccccccceeeeCCCccEEEEe---
Confidence 445 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCeEEEEecccccccccccCCCceeEEEeccCCeEEEEecCeEEEEeccCCCCchhhhhcccCCCCCeeEee
Q psy1644 282 GNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINY 361 (923)
Q Consensus 282 ~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis~~tLglVT~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInY 361 (923)
+|++|||||||+|+|||+|+|+|+|+||||||+++|||||+++||||+|+|+++|+||||||++|++||||||
T Consensus 85 -------ag~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY 157 (365)
T 2xzh_A 85 -------AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINY 157 (365)
T ss_dssp -------ETTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEE
T ss_pred -------cCCeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCeEEEEeeecccccccceeeecccccccccccccceeEEeccCCCccccCHHHHHhhhcCCCCCCCCchHHHHH
Q psy1644 362 RTDPKQTWLLLIGISAVSNRVVGAMQLYSVERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYF 441 (923)
Q Consensus 362 r~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~~SQ~iEGk~AkvAA~SP~giLRt~eTI~rFK~vp~~pGq~sPLL~YF 441 (923)
|+|+++|||+|+||++++++|+|+|||||+||++||+|||++|.+|--- .+|.+.|-
T Consensus 158 ~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~-------------------~~g~~~~~---- 214 (365)
T 2xzh_A 158 RTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFK-------------------MEGNAEES---- 214 (365)
T ss_dssp EECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEEC-------------------CTTCSSCE----
T ss_pred EECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEe-------------------cCCCCCCc----
Confidence 9999999999999999999999999999999999999999999886211 22322221
Q ss_pred HHHHhcCCCCcccccccchhhHHHHHHHHHHhcChhHHHHHHHHhCCCccHHHHHHHHHhcCCchhhHHHHhhhcCCCCC
Q psy1644 442 GILLDHGKLNKHESLELCRPVLAQVIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQDDEPL 521 (923)
Q Consensus 442 ~~LL~~g~LN~~ESlEL~rpVL~QVi~clae~Gqfdkiv~Y~~~vgytpDy~~LL~~i~~~nP~~a~efA~~L~~~~~pl 521 (923)
. +.|||++++. |
T Consensus 215 -~-----------------------lf~fa~r~~~----------g---------------------------------- 226 (365)
T 2xzh_A 215 -T-----------------------LFCFAVRGQA----------G---------------------------------- 226 (365)
T ss_dssp -E-----------------------EEEEEEEETT----------E----------------------------------
T ss_pred -e-----------------------EEEEEEecCC----------C----------------------------------
Confidence 0 0144444320 0
Q ss_pred cCccccchhhhhhhcccccccCCcchhhHHHHHHHhcCChhhhHHhhhcCCccChHHHHhHHhhccCCCCCceEEeeccc
Q psy1644 522 ADINQSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVCDRF 601 (923)
Q Consensus 522 ~di~~~~egLyy~Lgsivn~s~d~dVhfKYIeAA~k~gq~~EvERicresn~YdpekvKnfLKeakL~d~~PLI~VCDrf 601 (923)
.++| +
T Consensus 227 -----------------------~kLh------------I---------------------------------------- 231 (365)
T 2xzh_A 227 -----------------------GKLH------------I---------------------------------------- 231 (365)
T ss_dssp -----------------------EEEE------------E----------------------------------------
T ss_pred -----------------------cEEE------------E----------------------------------------
Confidence 0000 0
Q ss_pred cchhHHHHHHHhcCchheehhhhhccCccccceeee-eccccCCHHHhhhhhccCcchhhhHHhhhccccccchhhHHHH
Q psy1644 602 DFVHDLVLYLYRNNLQKYIEIYVQKGRKHLLEKWLK-EEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLY 680 (923)
Q Consensus 602 ~fV~dLv~YLY~n~~~k~IEvYvqkvNp~~tP~Vvg-LlD~dc~E~~Ik~LL~sv~~l~~~~~v~~~~~~~~pv~~Lv~e 680 (923)
||+.- .|...|..-. -.|+- +|
T Consensus 232 ------------------iEi~~---~~~~~~~f~kk~vdi~-----------------------------fp------- 254 (365)
T 2xzh_A 232 ------------------IEVGT---PPTGNQPFPKKAVDVF-----------------------------FP------- 254 (365)
T ss_dssp ------------------EECSS---CCTTCCCCCCEEEEEC-----------------------------CC-------
T ss_pred ------------------EEcCC---CCCCCCCcccccceee-----------------------------CC-------
Confidence 11100 0000000000 00000 00
Q ss_pred HhhcchhHHHHHHHHHHHHhhcccchhhhHHHHhHhcCccceeeeeeeeccccccEEEEEeccceEEEEecCCcceeeee
Q psy1644 681 LYRNNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLYRNNLQKYIEIYVQKVSAKYDVVYLITKFGYIHVYDIETATCIYMN 760 (923)
Q Consensus 681 v~RnrL~kll~p~LE~~~~~g~q~~~v~nalakiy~~~~~~~~~i~~~qvS~KyGvIyvITK~GflhlyDleTgt~Iy~n 760 (923)
+...-+||+++| ||+|||+||||||||||||||+|||+|||||
T Consensus 255 ------------------------------------pea~~DFPVamq-vs~kygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 255 ------------------------------------PEAQNDFPVAMQ-ISEKHDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp ------------------------------------TTCTTCCEEEEE-EETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ------------------------------------ccccCCceEEEE-ecccCCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 112467889866 9999999999999999999999999999999
Q ss_pred cccCCceEEeeccCCCCcEEEEcCCCeEEEEEecCCcccccccccCCCHHHHHHHHHHcCCCCchHHH
Q psy1644 761 RISSDTIFVTAPHEATGGIIGVNRKGQVLSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLF 828 (923)
Q Consensus 761 RIS~dtIFvta~~~~t~Gii~VNrkGqVL~V~Ide~~iVpYI~~~L~n~~LA~kLA~R~~LPGAddLf 828 (923)
|||+|+||+||++++++||+||||+||||+|+|||++|||||+++|+|++||++||+|+|||||||||
T Consensus 298 rIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ivpyi~~~l~n~~LA~~lA~R~~LpGAd~L~ 365 (365)
T 2xzh_A 298 RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNNAGAEELF 365 (365)
T ss_dssp ECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHHHHHHHTTCCHHHHHHHHHHTCC-------
T ss_pred ccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccEehhhhhcCCCHHHHHHHHHhcCCCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
No 4
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=100.00 E-value=1.9e-68 Score=593.13 Aligned_cols=136 Identities=76% Similarity=1.191 Sum_probs=133.2
Q ss_pred CccceeeeecCCCCCCceEEEEEEecCCccEEEEEecCCCCCCCCCcccceeeeecCCCccCCcceeEEeccccceEEEE
Q psy1644 1 HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYDVVYLI 80 (923)
Q Consensus 1 haa~F~sfkl~gN~~~stL~cfa~r~~~~gkLhiiEig~~~~g~~~f~kK~vd~~Fppe~~~DFPvamqiS~k~G~iyli 80 (923)
|||||++||++||++|++|||||+|+.+||||||||+|+++.|++||+||++|+|||||+.+|||||||+|+|||+||||
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi 276 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eeeeeEEEEecccceeeeecccCCCcEEEeeccCCCcceEEEecCCcceeeeeeece
Q psy1644 81 TKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGLTNVGINVGSVSFNTL 137 (923)
Q Consensus 81 TK~G~lhl~Dlet~t~iy~~rIS~~~if~ta~~~~t~Gil~vn~~G~~~~si~~~t~ 137 (923)
||+||+||||+|||+||||+|||+|+||+||++++++||++||++| +|++|++++.
T Consensus 277 TK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~G-qVl~v~v~e~ 332 (494)
T 1bpo_A 277 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG-QVLSVCVEEE 332 (494)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTC-EEEEEEECTT
T ss_pred ecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCc-eEEEEEEccc
Confidence 9999999999999999999999999999999999999999999999 8999999554
No 5
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=100.00 E-value=6e-63 Score=602.16 Aligned_cols=127 Identities=75% Similarity=1.155 Sum_probs=125.0
Q ss_pred ccceeeeeeeeccccccEEEEEeccceEEEEecCCcceeeeecccCCceEEeeccCCCCcEEEEcCCCeEEEEEecCCcc
Q psy1644 719 LQKYIEIYVQKVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSVSVDEDNI 798 (923)
Q Consensus 719 ~~~~~~i~~~qvS~KyGvIyvITK~GflhlyDleTgt~Iy~nRIS~dtIFvta~~~~t~Gii~VNrkGqVL~V~Ide~~i 798 (923)
..-+||+++| ||+|||+||||||+||+|+||+||||||||||||+||||+||++++++||+||||+||||+|+|||++|
T Consensus 256 ~~~Dfpv~~~-vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 256 AQNDFPVAMQ-ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred cccCcceEEE-eccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 5689999976 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCcHHHHHH
Q psy1644 799 IPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAK 846 (923)
Q Consensus 799 VpYI~~~L~n~~LA~kLA~R~~LPGAddLf~~qFn~l~~~G~y~eAAk 846 (923)
||||+++|+|++||++||+|+||||||+||++||++||++|||++||+
T Consensus 335 v~yi~~~l~~~~la~~~a~r~~lpGad~l~~~~F~~l~~~g~y~~AA~ 382 (1630)
T 1xi4_A 335 IPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAK 382 (1630)
T ss_pred hhhHhhccCCHHHHHHHHHhcCCCCchhHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999
No 6
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=100.00 E-value=2.4e-47 Score=412.70 Aligned_cols=136 Identities=76% Similarity=1.191 Sum_probs=133.2
Q ss_pred CccceeeeecCCCCCCceEEEEEEecCCccEEEEEecCCCCCCCCCcccceeeeecCCCccCCcceeEEeccccceEEEE
Q psy1644 1 HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYDVVYLI 80 (923)
Q Consensus 1 haa~F~sfkl~gN~~~stL~cfa~r~~~~gkLhiiEig~~~~g~~~f~kK~vd~~Fppe~~~DFPvamqiS~k~G~iyli 80 (923)
|||||++||++||++|++|||||+|+.+||||||||+|++++|++||+||++|+|||||+++|||||||+|+|||+||||
T Consensus 198 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyvi 277 (365)
T 2xzh_A 198 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 277 (365)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEE
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eeeeeEEEEecccceeeeecccCCCcEEEeeccCCCcceEEEecCCcceeeeeeece
Q psy1644 81 TKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGLTNVGINVGSVSFNTL 137 (923)
Q Consensus 81 TK~G~lhl~Dlet~t~iy~~rIS~~~if~ta~~~~t~Gil~vn~~G~~~~si~~~t~ 137 (923)
||+||+||||+|||+||||||||+|+||+||++++++||++||++| ||++|++++.
T Consensus 278 TK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~G-qVl~v~v~~~ 333 (365)
T 2xzh_A 278 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG-QVLSVCVEEE 333 (365)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTC-EEEEEEECTT
T ss_pred eCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCC-EEEEEEECcc
Confidence 9999999999999999999999999999999999999999999999 8999999554
No 7
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=98.00 E-value=0.0012 Score=65.68 Aligned_cols=132 Identities=8% Similarity=0.006 Sum_probs=90.7
Q ss_pred CceEEEEECCCCCCCccccc----CccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEE
Q psy1644 242 SAQVVIIDMNDPTNPIRRPI----SADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWK 317 (923)
Q Consensus 242 ~~qVvIVDL~n~~~v~Rrpi----~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWk 317 (923)
...|.+.|+.++..+.+.-- ..-+...+|..+.++.-+ ....+.+||+++.+.++.+....++.--.
T Consensus 196 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 266 (369)
T 3zwl_B 196 DGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS---------RDTNSFLVDVSTLQVLKKYETDCPLNTAV 266 (369)
T ss_dssp TSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE---------TTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred CCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec---------CCceEEEEECCCCceeeeecCCCCceeEE
Confidence 34899999987544333211 122455688887777652 34689999999999999998888898888
Q ss_pred eccCCeEEEEecC----------------eEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeeccccc
Q psy1644 318 WISPNTLALVTET----------------SVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNR 381 (923)
Q Consensus 318 Wis~~tLglVT~t----------------aVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~ 381 (923)
|-.....-+++.. .++.|++... .+...+.-| ...|..-..++++++++..|
T Consensus 267 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~------- 334 (369)
T 3zwl_B 267 ITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-EEIGRVQGH----FGPLNTVAISPQGTSYASGG------- 334 (369)
T ss_dssp ECSSSSEEEEEECCC-------------CEEEEEETTTC-CEEEEEECC----SSCEEEEEECTTSSEEEEEE-------
T ss_pred ecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-cchhheecc----cCcEEEEEECCCCCEEEEEc-------
Confidence 8877766666543 5788887533 233333333 24577778888988877554
Q ss_pred ccceeeecccccc
Q psy1644 382 VVGAMQLYSVERK 394 (923)
Q Consensus 382 i~G~mQLYS~er~ 394 (923)
-.|.+.+|+++++
T Consensus 335 ~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 335 EDGFIRLHHFEKS 347 (369)
T ss_dssp TTSEEEEEEECHH
T ss_pred CCCeEEEEECccc
Confidence 4688999998764
No 8
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.98 E-value=0.0049 Score=69.67 Aligned_cols=267 Identities=13% Similarity=0.142 Sum_probs=132.1
Q ss_pred eeEEecc--ccceEEEEeeeeeEEEEecccceeeeecccCCCcEEEeeccCCCcceEEEecCCcceeeeeee------ce
Q psy1644 66 VAMQVSA--KYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGLTNVGINVGSVSFN------TL 137 (923)
Q Consensus 66 vamqiS~--k~G~iyliTK~G~lhl~Dlet~t~iy~~rIS~~~if~ta~~~~t~Gil~vn~~G~~~~si~~~------t~ 137 (923)
.++..++ .-..++..+..|.|++||+.++.++..-+-....|-..+-+.++.=++.....| .+.-.... +.
T Consensus 188 ~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~v~vwd~~~~~~~~~~ 266 (814)
T 3mkq_A 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG-TLKIWNSSTYKVEKTL 266 (814)
T ss_dssp CEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS-CEEEEETTTCSEEEEE
T ss_pred EEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCcEEEEe
Confidence 3455555 566888888999999999999998876543333443333222222222222223 11111111 11
Q ss_pred eecccceeEEEec---------ccccceEEEEecCCCCCCCccCccccccccCcccchhhhcCCCCCCC-----------
Q psy1644 138 TMESDKFICVREK---------IAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKAGNDN----------- 197 (923)
Q Consensus 138 tm~sdk~ic~~~~---------~~~~~~vviid~~~~~~~~r~~~~a~~~im~p~~~i~al~~~~~~~~----------- 197 (923)
....+...|+.-. .+....++++++.... ..+-++|..+.++.-+......
T Consensus 267 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 337 (814)
T 3mkq_A 267 NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE---------PTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNE 337 (814)
T ss_dssp CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS---------CCEEECSSSEEEEECCTTSCTTCEEEEECCSCC
T ss_pred ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC---------ceeEECCCCCEEEECcccccceeeeeeeccccc
Confidence 1111122222100 1122457777776542 1345677777777543222100
Q ss_pred -CC-CcccceeeeccccccccCCcccccceeeecceEEEEEeccCCCceEEEEECCCCCCCcccccCccccccCCCccEE
Q psy1644 198 -NP-NGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVI 275 (923)
Q Consensus 198 -~~-~~~~~~e~~~Lt~lGI~~~si~F~~lTmESDkyICVRE~~~~~~qVvIVDL~n~~~v~Rrpi~ADSAIMnP~~~II 275 (923)
.. +..+......+...+..+.++.|.. ..+++.+-. ...+.+.|+........-+ .-+...+|..+.+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp----dg~~la~~~----~~~~~i~~~~~~~~~~~~~--i~~~~~spdg~~l 407 (814)
T 3mkq_A 338 EVEQDEPLSLQTKELGSVDVFPQSLAHSP----NGRFVTVVG----DGEYVIYTALAWRNKAFGK--CQDFVWGPDSNSY 407 (814)
T ss_dssp CCCSSSCBCCCCEEECCCSSCCSEEEECT----TSSEEEEEE----TTEEEEEETTTTEEEEEEE--CSEEEECTTSSCE
T ss_pred ccccCccceeeeecCCCCccCCceeEECC----CCCEEEEec----CCEEEEEECccccccCCCc--eEEEEEeCCCCeE
Confidence 00 0011101112233333444444432 456777754 3578888875443322222 3356678988888
Q ss_pred EEeccCCCCCCCCCCCeEEEEeccccc--ccccccCCCceeEEEeccCCeEEE-EecCeEEEEeccCCCCchhhhhcccC
Q psy1644 276 ALKGKAGNDNNPNAPKTLQIFNIEMKS--KMKAHPMTDDVVFWKWISPNTLAL-VTETSVYHWSMEGDSTPEKMFDRHST 352 (923)
Q Consensus 276 ALra~~~~~n~~~~g~~LQIFNle~K~--KLKs~~m~E~VvfWkWis~~tLgl-VT~taVYHWsi~g~s~P~K~FdR~~~ 352 (923)
|.-. ....+++|+.-... +..+..+..+=.| ...|+. -.+..|+.|+++.. .+...++-|..
T Consensus 408 a~~~---------~~g~v~l~~~~~~~~~~v~~~~~s~dg~~-----~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~ 472 (814)
T 3mkq_A 408 ALID---------ETGQIKYYKNFKEVTSWSVPMHSAIDRLF-----SGALLGVKSDGFVYFFDWDNG-TLVRRIDVNAK 472 (814)
T ss_dssp EEEC---------TTCCEEEEETTEECTTCCCCCSSCCCEEE-----CSSSEEEEETTEEEEECTTTC-CEEEEESSCEE
T ss_pred EEEe---------CCCcEEEEECCCCccceEEcCCcCcccee-----cceEEEEecCCEEEEEECCcC-cEEEEEecCCC
Confidence 8872 34579999643222 2222223222222 124444 44568999998532 23333333322
Q ss_pred CCCCeeEeeeeCCCCCeEEEEe
Q psy1644 353 LNGCQIINYRTDPKQTWLLLIG 374 (923)
Q Consensus 353 L~~~QIInYr~d~~~kW~~LvG 374 (923)
.-.-++|++|+++.+
T Consensus 473 -------~v~~s~dg~~la~~~ 487 (814)
T 3mkq_A 473 -------DVIWSDNGELVMIVN 487 (814)
T ss_dssp -------EEEECTTSSEEEEEE
T ss_pred -------EEEEcCCCCEEEEEE
Confidence 556788889988884
No 9
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.67 E-value=0.01 Score=62.18 Aligned_cols=260 Identities=13% Similarity=0.206 Sum_probs=146.6
Q ss_pred ccEEEEEecCCCCCCCCCcccceeeeecCCCccCCcceeEEeccccceEEEEeeeeeEEEEecccceeeeecccCCCcEE
Q psy1644 29 GGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIF 108 (923)
Q Consensus 29 ~gkLhiiEig~~~~g~~~f~kK~vd~~Fppe~~~DFPvamqiS~k~G~iyliTK~G~lhl~Dlet~t~iy~~rIS~~~if 108 (923)
.|.+++-++.+. .. .+. +..+ ..+..-++..|+.-..+..-+..|.|++||++++.++..-+-...
T Consensus 112 d~~v~lw~~~~~---~~---~~~--~~~~---~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--- 177 (401)
T 4aez_A 112 ERNVYVWNADSG---SV---SAL--AETD---ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA--- 177 (401)
T ss_dssp TTEEEEEETTTC---CE---EEE--EECC---TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS---
T ss_pred CCeEEEeeCCCC---cE---eEe--eecC---CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCC---
Confidence 458999988642 11 111 1111 244556788888777888889999999999999987654321111
Q ss_pred EeeccCCCcceEEEecCCcceeeeeeeceeecccceeEEEecccccceEEEEecCCCCCCCccCccccccccCcccchhh
Q psy1644 109 VTAPHEATGGIIGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIA 188 (923)
Q Consensus 109 ~ta~~~~t~Gil~vn~~G~~~~si~~~t~tm~sdk~ic~~~~~~~~~~vviid~~~~~~~~r~~~~a~~~im~p~~~i~a 188 (923)
.+.++.++ +++++.- .....|.+.|+.....+++ .
T Consensus 178 -------------------~v~~~~~~------~~~l~~~---~~dg~i~i~d~~~~~~~~~-----------------~ 212 (401)
T 4aez_A 178 -------------------RVGCLSWN------RHVLSSG---SRSGAIHHHDVRIANHQIG-----------------T 212 (401)
T ss_dssp -------------------CEEEEEEE------TTEEEEE---ETTSEEEEEETTSSSCEEE-----------------E
T ss_pred -------------------ceEEEEEC------CCEEEEE---cCCCCEEEEecccCcceee-----------------E
Confidence 23333331 1223221 2235677878764422211 1
Q ss_pred hcCCCCCCCCCCcccceeeeccccccccCCcccccceeeecceEEEEEeccCCCceEEEEECCCCCCCcccc---cCccc
Q psy1644 189 LKGKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRP---ISADS 265 (923)
Q Consensus 189 l~~~~~~~~~~~~~~~~e~~~Lt~lGI~~~si~F~~lTmESDkyICVRE~~~~~~qVvIVDL~n~~~v~Rrp---i~ADS 265 (923)
+++.. +. .+. +.|.. +.+++.+- +....|.+.|+.......... -..-+
T Consensus 213 ~~~~~-------~~-------v~~-------~~~~~----~~~~l~s~---~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 264 (401)
T 4aez_A 213 LQGHS-------SE-------VCG-------LAWRS----DGLQLASG---GNDNVVQIWDARSSIPKFTKTNHNAAVKA 264 (401)
T ss_dssp EECCS-------SC-------EEE-------EEECT----TSSEEEEE---ETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred EcCCC-------CC-------eeE-------EEEcC----CCCEEEEE---eCCCeEEEccCCCCCccEEecCCcceEEE
Confidence 11100 00 011 11111 12222221 123467777777643322111 11234
Q ss_pred cccCCCc-cEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEeccCCeEEEE-e---cCeEEEEeccCC
Q psy1644 266 AIMNPAS-KVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALV-T---ETSVYHWSMEGD 340 (923)
Q Consensus 266 AIMnP~~-~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis~~tLglV-T---~taVYHWsi~g~ 340 (923)
...+|.. .++|.=+. .....+.+||+++.+.++.+.....|.--.|-.+...-++ + +..|+.|++...
T Consensus 265 ~~~~p~~~~ll~~~~g-------s~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 265 VAWCPWQSNLLATGGG-------TMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp EEECTTSTTEEEEECC-------TTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred EEECCCCCCEEEEecC-------CCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 5578854 56665410 0246899999999999999988889999999766554444 3 679999998643
Q ss_pred C-CchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeeccccc
Q psy1644 341 S-TPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVER 393 (923)
Q Consensus 341 s-~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er 393 (923)
. .+...+.-| ...|..-..+++++|++..| -.|.+.+|.+..
T Consensus 338 ~~~~~~~~~~h----~~~v~~~~~s~dg~~l~s~~-------~dg~i~iw~~~~ 380 (401)
T 4aez_A 338 GLTKQVDIPAH----DTRVLYSALSPDGRILSTAA-------SDENLKFWRVYD 380 (401)
T ss_dssp EEEEEEEEECC----SSCCCEEEECTTSSEEEEEC-------TTSEEEEEECCC
T ss_pred cceeEEEecCC----CCCEEEEEECCCCCEEEEEe-------CCCcEEEEECCC
Confidence 2 222212222 23566777888999987655 468899998754
No 10
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.65 E-value=0.056 Score=53.12 Aligned_cols=127 Identities=10% Similarity=0.141 Sum_probs=81.9
Q ss_pred ceEEEEECCCCCCCcccc--cCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEecc
Q psy1644 243 AQVVIIDMNDPTNPIRRP--ISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWIS 320 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrp--i~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis 320 (923)
..|.+.|+.+.....+.+ -...+...+|..+.+|.=+ ....+++||+++............|.--.|-.
T Consensus 205 g~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---------~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~ 275 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM---------ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY 275 (337)
T ss_dssp SEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEE---------TTSCEEEEETTSSCEEEECCCSSCEEEEEECT
T ss_pred CcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEc---------CCCcEEEEECCCCCeEEEcCCccceeEEEECC
Confidence 366677776554332222 1233566789888888752 34689999999887766666677888999986
Q ss_pred CCe-EEEEe-cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeeccc
Q psy1644 321 PNT-LALVT-ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSV 391 (923)
Q Consensus 321 ~~t-LglVT-~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~ 391 (923)
+.. |+..+ +..|+.|++...... +... ....|..-..++++++++..+ -.|.+.+|++
T Consensus 276 ~~~~l~~~~~dg~i~~~~~~~~~~~---~~~~---~~~~v~~~~~s~~~~~l~~~~-------~dg~i~iw~~ 335 (337)
T 1gxr_A 276 CGKWFVSTGKDNLLNAWRTPYGASI---FQSK---ESSSVLSCDISVDDKYIVTGS-------GDKKATVYEV 335 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEE---EEEE---CSSCEEEEEECTTSCEEEEEE-------TTSCEEEEEE
T ss_pred CCCEEEEecCCCcEEEEECCCCeEE---EEec---CCCcEEEEEECCCCCEEEEec-------CCCeEEEEEE
Confidence 554 44443 347999998654322 1111 235677788888988876544 2567777764
No 11
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.61 E-value=0.0068 Score=60.39 Aligned_cols=111 Identities=16% Similarity=0.202 Sum_probs=75.8
Q ss_pred cCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEec----cCCeEEEEec-CeEEEEeccCCCC
Q psy1644 268 MNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWI----SPNTLALVTE-TSVYHWSMEGDST 342 (923)
Q Consensus 268 MnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWi----s~~tLglVT~-taVYHWsi~g~s~ 342 (923)
++|..+.++.=+ ....+.+||+++.+.+........|.--.|- +.+.|+..+. ..|+.|++... .
T Consensus 176 ~~~~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~ 245 (357)
T 3i2n_A 176 YNQEERVVCAGY---------DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ-H 245 (357)
T ss_dssp CC-CCCEEEEEE---------TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE-E
T ss_pred cCCCCCEEEEEc---------cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC-C
Confidence 678888777752 3468999999999887777778889888998 5677777663 47999998642 2
Q ss_pred chhhhhcc-cCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecccccc
Q psy1644 343 PEKMFDRH-STLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERK 394 (923)
Q Consensus 343 P~K~FdR~-~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~ 394 (923)
+.+.|... ..-....|..-..++++++++++|= -.|.+.+|.++..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG------GAGGLHLWKYEYP 292 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE------TTSEEEEEEEECC
T ss_pred cccceeeeccCCCcCCEEEEEECCCCCcEEEEEe------CCCcEEEeecCCC
Confidence 33333211 0011346777778888887666662 3678999998743
No 12
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.55 E-value=0.0065 Score=62.70 Aligned_cols=136 Identities=10% Similarity=0.076 Sum_probs=83.4
Q ss_pred CceEEEEECCCCCCCcccccC----ccccccCCCcc-EEEEeccCCCCCCCCCCCeEEEEecccccc-cccccC--CCce
Q psy1644 242 SAQVVIIDMNDPTNPIRRPIS----ADSAIMNPASK-VIALKGKAGNDNNPNAPKTLQIFNIEMKSK-MKAHPM--TDDV 313 (923)
Q Consensus 242 ~~qVvIVDL~n~~~v~Rrpi~----ADSAIMnP~~~-IIALra~~~~~n~~~~g~~LQIFNle~K~K-LKs~~m--~E~V 313 (923)
...|.+.|+.....+.+.+.. .-+...+|..+ .++.=+ ....+.+||+++..+ ++.... ...|
T Consensus 268 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~v 338 (420)
T 3vl1_A 268 SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY---------ENGMLAQWDLRSPECPVGEFLINEGTPI 338 (420)
T ss_dssp TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE---------TTSEEEEEETTCTTSCSEEEEESTTSCE
T ss_pred CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe---------CCCeEEEEEcCCCcCchhhhhccCCCCc
Confidence 346888888776654443322 23556788876 666542 346899999998655 555443 2333
Q ss_pred eEEEeccCCeEEEEe-cCeEEEEeccCCCCchhhh--hcccCCC--CCeeEeeeeCCCCC---eEEEEeeecccccccce
Q psy1644 314 VFWKWISPNTLALVT-ETSVYHWSMEGDSTPEKMF--DRHSTLN--GCQIINYRTDPKQT---WLLLIGISAVSNRVVGA 385 (923)
Q Consensus 314 vfWkWis~~tLglVT-~taVYHWsi~g~s~P~K~F--dR~~~L~--~~QIInYr~d~~~k---W~~LvGI~~~~~~i~G~ 385 (923)
.--.|-+.+.|+-.+ +..|..|++.....|..+. .....+. ...|....-+++.+ +++.+| -.|.
T Consensus 339 ~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g-------~~g~ 411 (420)
T 3vl1_A 339 NNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVG-------KNNF 411 (420)
T ss_dssp EEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEE-------TTTE
T ss_pred eEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEc-------CCce
Confidence 333333444554444 3479999997765554443 2222222 34677777778888 787777 3578
Q ss_pred eeeccccc
Q psy1644 386 MQLYSVER 393 (923)
Q Consensus 386 mQLYS~er 393 (923)
+.+|+++.
T Consensus 412 ~~~~~~~~ 419 (420)
T 3vl1_A 412 CALYNLSN 419 (420)
T ss_dssp EEEEESCC
T ss_pred EEEEeccC
Confidence 89998764
No 13
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.46 E-value=0.042 Score=56.22 Aligned_cols=132 Identities=8% Similarity=-0.001 Sum_probs=83.1
Q ss_pred CceEEEEECCCCCCCcccc--cCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEec
Q psy1644 242 SAQVVIIDMNDPTNPIRRP--ISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWI 319 (923)
Q Consensus 242 ~~qVvIVDL~n~~~v~Rrp--i~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWi 319 (923)
...|.++|+........-+ -...+...+|..+.+++-+. ....+.+||+++.+.++.......+.--.|-
T Consensus 137 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~--------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 208 (391)
T 1l0q_A 137 DKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANF--------DSMSISVIDTVTNSVIDTVKVEAAPSGIAVN 208 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEET--------TTTEEEEEETTTTEEEEEEECSSEEEEEEEC
T ss_pred CCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeC--------CCCEEEEEECCCCeEEEEEecCCCccceEEC
Confidence 3467777776543221111 12245668898876654321 3468999999998877777766677667776
Q ss_pred cCCeEEEEe-----cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeeccccc
Q psy1644 320 SPNTLALVT-----ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVER 393 (923)
Q Consensus 320 s~~tLglVT-----~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er 393 (923)
.+...-+++ ...|+.|++... .+...+..+ ..+..-..+++++++++.+ .-.|.+.+|..+.
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~-----~~~~~~~~s~dg~~l~~s~------~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTN-KITARIPVG-----PDPAGIAVTPDGKKVYVAL------SFXNTVSVIDTAT 275 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTT-EEEEEEECC-----SSEEEEEECTTSSEEEEEE------TTTTEEEEEETTT
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCC-eEEEEEecC-----CCccEEEEccCCCEEEEEc------CCCCEEEEEECCC
Confidence 665444444 368999998643 233333322 2466677888999887665 2247788888764
No 14
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.38 E-value=0.029 Score=60.48 Aligned_cols=305 Identities=11% Similarity=0.119 Sum_probs=164.2
Q ss_pred cEEEEEecCCCCCCCCCcccceeeeecCCCccCCcceeEEeccccceEEEEeeeeeEEEEecccceeeeecccCCCcEEE
Q psy1644 30 GKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFV 109 (923)
Q Consensus 30 gkLhiiEig~~~~g~~~f~kK~vd~~Fppe~~~DFPvamqiS~k~G~iyliTK~G~lhl~Dlet~t~iy~~rIS~~~if~ 109 (923)
|.+++.++.+. +....+..+.....+.+.++..+ ..+.+...+..|.+++||+.++.++..-+-....|..
T Consensus 274 ~~i~~wd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~ 344 (615)
T 1pgu_A 274 ATIRVWDVTTS--------KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITA 344 (615)
T ss_dssp SEEEEEETTTT--------EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEE
T ss_pred CcEEEEECCCC--------cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEE
Confidence 57888877541 12223333434445667777776 7778899999999999999999988766554455543
Q ss_pred eeccCCCcceEEEecCC---------------cceeeeeeeceeecccceeEEEecccccceEEEEecCCCCCCCccCcc
Q psy1644 110 TAPHEATGGIIGLTNVG---------------INVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPIS 174 (923)
Q Consensus 110 ta~~~~t~Gil~vn~~G---------------~~~~si~~~t~tm~sdk~ic~~~~~~~~~~vviid~~~~~~~~r~~~~ 174 (923)
.+. .+ ++.-...| -.+.++.|. .++++..- .....+.+.|+..... .+.|
T Consensus 345 ~~~-~~---l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~-----~~~~l~~~---~~d~~i~~~~~~~~~~-~~~~-- 409 (615)
T 1pgu_A 345 LTV-NP---LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS-----KAQEYSSI---SWDDTLKVNGITKHEF-GSQP-- 409 (615)
T ss_dssp EET-TT---TEEEETTSCEEETTTTEEECCCCSCEEEEECC-----STTCCEEE---ETTTEEEETTEEEEEC-SSCE--
T ss_pred EEe-cC---cEEECCCCeEEEEEchhhcCcccCceEEEEEC-----CCcEEEEE---eCCCCEEEEEcccCcc-cCCc--
Confidence 333 11 33333222 123333331 12222211 1123455544443211 1111
Q ss_pred ccccccCcccchhhhcCC--CCCCCCCCcccceeeeccccccccCCcccccceeeecceEEEEEeccCCCceEEEEECCC
Q psy1644 175 ADSAIMNPASKVIALKGK--AGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMND 252 (923)
Q Consensus 175 a~~~im~p~~~i~al~~~--~~~~~~~~~~~~~e~~~Lt~lGI~~~si~F~~lTmESDkyICVRE~~~~~~qVvIVDL~n 252 (923)
..+-..|..+.++.-.. +.--+.+.++.. .--..+-.+.++.|. ++++.+-.. ....|.+.|+.+
T Consensus 410 -~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------~~~l~~~~~--~d~~i~~~~~~~ 476 (615)
T 1pgu_A 410 -KVASANNDGFTAVLTNDDDLLILQSFTGDII----KSVRLNSPGSAVSLS------QNYVAVGLE--EGNTIQVFKLSD 476 (615)
T ss_dssp -EEEEECSSSEEEEEETTSEEEEEETTTCCEE----EEEECSSCEEEEEEC------SSEEEEEET--TTSCEEEEETTE
T ss_pred -eEEEEcCCCCEEEEeCCCceEEEeccCCcee----eecccCCCceEEEEc------CCEEEEeec--CCCeEEEEECCC
Confidence 12223555544443100 000000011111 111122233333333 445544332 034788888876
Q ss_pred CCCCccc----ccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccccccccc--CCCceeEEEecc------
Q psy1644 253 PTNPIRR----PISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHP--MTDDVVFWKWIS------ 320 (923)
Q Consensus 253 ~~~v~Rr----pi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~--m~E~VvfWkWis------ 320 (923)
.....+. .-..-+...+|..+.||.=+ ....+.|||+++.+.++.+. ....|.-=.|-.
T Consensus 477 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~ 547 (615)
T 1pgu_A 477 LEVSFDLKTPLRAKPSYISISPSETYIAAGD---------VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGAN 547 (615)
T ss_dssp EEEEEECSSCCSSCEEEEEECTTSSEEEEEE---------TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC----
T ss_pred ccccccccCCccCceEEEEECCCCCEEEEcC---------CCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccc
Confidence 4321110 11122455688888887753 34689999999988888765 466777778865
Q ss_pred -----CCeEEEEec-CeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecccc
Q psy1644 321 -----PNTLALVTE-TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVE 392 (923)
Q Consensus 321 -----~~tLglVT~-taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~e 392 (923)
.+.|+..+. ..|+.|+++....+.+.+..|. ..|..-.-+++++ ++..| -.|.+.+|+++
T Consensus 548 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~----~~v~~l~~s~~~~-l~s~~-------~d~~v~iw~~~ 613 (615)
T 1pgu_A 548 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK----DGVNNLLWETPST-LVSSG-------ADACIKRWNVV 613 (615)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST----TCEEEEEEEETTE-EEEEE-------TTSCEEEEEEC
T ss_pred ccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCc----cceEEEEEcCCCC-eEEec-------CCceEEEEeee
Confidence 566776664 4899999976656666666653 4677777778887 44333 35778888765
No 15
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.38 E-value=0.044 Score=56.91 Aligned_cols=131 Identities=14% Similarity=0.212 Sum_probs=84.1
Q ss_pred CceEEEEECCCCCCCccc--ccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEec
Q psy1644 242 SAQVVIIDMNDPTNPIRR--PISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWI 319 (923)
Q Consensus 242 ~~qVvIVDL~n~~~v~Rr--pi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWi 319 (923)
...|.++|+.+....... +-...+...+|..+.+.+-+. ....+.+||+++.+.++.......+.--.|-
T Consensus 282 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~--------~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s 353 (433)
T 3bws_A 282 GGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM--------CCSKIEVYDLKEKKVQKSIPVFDKPNTIALS 353 (433)
T ss_dssp CEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEET--------TTTEEEEEETTTTEEEEEEECSSSEEEEEEC
T ss_pred CCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEec--------CCCEEEEEECCCCcEEEEecCCCCCCeEEEc
Confidence 347778887765322221 112234567888765544321 3568999999988888877777778888887
Q ss_pred cCCeEEEEecC-----------------eEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccc
Q psy1644 320 SPNTLALVTET-----------------SVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRV 382 (923)
Q Consensus 320 s~~tLglVT~t-----------------aVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i 382 (923)
.+....+++.. .|+.|++... .+.+.+.- +..+.....+++++|++..+- -
T Consensus 354 ~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~-~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~------~ 421 (433)
T 3bws_A 354 PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD-TVKEFWEA-----GNQPTGLDVSPDNRYLVISDF------L 421 (433)
T ss_dssp TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT-EEEEEEEC-----SSSEEEEEECTTSCEEEEEET------T
T ss_pred CCCCEEEEEecCCCccccccccccccceEEEEEECCCC-cEEEEecC-----CCCCceEEEcCCCCEEEEEEC------C
Confidence 77654444443 8999998532 23333322 345777788999999876552 2
Q ss_pred cceeeecccc
Q psy1644 383 VGAMQLYSVE 392 (923)
Q Consensus 383 ~G~mQLYS~e 392 (923)
.|.+.+|.++
T Consensus 422 d~~i~v~~~~ 431 (433)
T 3bws_A 422 DHQIRVYRRD 431 (433)
T ss_dssp TTEEEEEEET
T ss_pred CCeEEEEEec
Confidence 4778888764
No 16
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.34 E-value=0.091 Score=52.25 Aligned_cols=132 Identities=9% Similarity=0.095 Sum_probs=82.5
Q ss_pred ceEEEEECCCCCCCcccc--cCccccccCC---CccEEEEeccCCCCCCCCCCCeEEEEeccccccccccc------CCC
Q psy1644 243 AQVVIIDMNDPTNPIRRP--ISADSAIMNP---ASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHP------MTD 311 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrp--i~ADSAIMnP---~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~------m~E 311 (923)
..|.+.|+.......... -..-+.-.+| ..+.++.=+ ....+.+||+++...++.+. ...
T Consensus 190 ~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 260 (357)
T 3i2n_A 190 GDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATS---------LEGKFHVFDMRTQHPTKGFASVSEKAHKS 260 (357)
T ss_dssp SEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEE---------STTEEEEEEEEEEETTTEEEEEEEECCSS
T ss_pred CeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEEC---------CCCeEEEEeCcCCCcccceeeeccCCCcC
Confidence 367777776654322221 1233556777 666666642 35689999999988877653 455
Q ss_pred ceeEEEeccCCe--EEEEe-cCeEEEEeccCCCCc------------------hhhhhcccCCCCCeeEeeeeCCCCCeE
Q psy1644 312 DVVFWKWISPNT--LALVT-ETSVYHWSMEGDSTP------------------EKMFDRHSTLNGCQIINYRTDPKQTWL 370 (923)
Q Consensus 312 ~VvfWkWis~~t--LglVT-~taVYHWsi~g~s~P------------------~K~FdR~~~L~~~QIInYr~d~~~kW~ 370 (923)
.|.--.|-.+.. |+..+ +..|+.|++.....+ ...+..| ...|..-..+++++++
T Consensus 261 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l 336 (357)
T 3i2n_A 261 TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS----TQPISSLDWSPDKRGL 336 (357)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC----SSCEEEEEECSSSTTE
T ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC----CCCeeEEEEcCCCCeE
Confidence 676677777654 44333 348999999643322 1112222 2357777788888988
Q ss_pred EEEeeecccccccceeeeccccc
Q psy1644 371 LLIGISAVSNRVVGAMQLYSVER 393 (923)
Q Consensus 371 ~LvGI~~~~~~i~G~mQLYS~er 393 (923)
++.|= -.|.+.+|.+++
T Consensus 337 ~~s~~------~d~~i~iw~~~~ 353 (357)
T 3i2n_A 337 CVCSS------FDQTVRVLIVTK 353 (357)
T ss_dssp EEEEE------TTSEEEEEEECC
T ss_pred EEEec------CCCcEEEEECCC
Confidence 76552 367889998764
No 17
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.24 E-value=0.092 Score=54.90 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=86.1
Q ss_pred CceEEEEECCCCCCCcccccC----ccccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccccccccc-CCCceeEE
Q psy1644 242 SAQVVIIDMNDPTNPIRRPIS----ADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHP-MTDDVVFW 316 (923)
Q Consensus 242 ~~qVvIVDL~n~~~v~Rrpi~----ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~-m~E~VvfW 316 (923)
...|.+.|+.......+.-.. .-+.-.+|..+.+|.=+ ....+.+||+++...+..+. ....|.--
T Consensus 195 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---------~d~~v~iwd~~~~~~~~~~~~~~~~v~~~ 265 (401)
T 4aez_A 195 SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG---------NDNVVQIWDARSSIPKFTKTNHNAAVKAV 265 (401)
T ss_dssp TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE---------TTSCEEEEETTCSSEEEEECCCSSCCCEE
T ss_pred CCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe---------CCCeEEEccCCCCCccEEecCCcceEEEE
Confidence 347888888755443332211 22455788888887752 34689999999877666553 35567777
Q ss_pred EeccC--CeEEEEe---cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeeccc
Q psy1644 317 KWISP--NTLALVT---ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSV 391 (923)
Q Consensus 317 kWis~--~tLglVT---~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~ 391 (923)
.|-.. ..++... +..|+.|++... .+.+.++. +.+|..-..++++++++..+ |.-.|.+.+|..
T Consensus 266 ~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~-----g~~dg~i~v~~~ 334 (401)
T 4aez_A 266 AWCPWQSNLLATGGGTMDKQIHFWNAATG-ARVNTVDA-----GSQVTSLIWSPHSKEIMSTH-----GFPDNNLSIWSY 334 (401)
T ss_dssp EECTTSTTEEEEECCTTTCEEEEEETTTC-CEEEEEEC-----SSCEEEEEECSSSSEEEEEE-----CTTTCEEEEEEE
T ss_pred EECCCCCCEEEEecCCCCCEEEEEECCCC-CEEEEEeC-----CCcEEEEEECCCCCeEEEEe-----ecCCCcEEEEec
Confidence 77753 3344332 679999999643 34444432 35788888899999987764 234678888887
Q ss_pred cc
Q psy1644 392 ER 393 (923)
Q Consensus 392 er 393 (923)
+.
T Consensus 335 ~~ 336 (401)
T 4aez_A 335 SS 336 (401)
T ss_dssp ET
T ss_pred CC
Confidence 65
No 18
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.23 E-value=0.067 Score=57.67 Aligned_cols=107 Identities=13% Similarity=0.100 Sum_probs=75.8
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEeccCCeEEEEe--cCeEEEEeccCCCC
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVT--ETSVYHWSMEGDST 342 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis~~tLglVT--~taVYHWsi~g~s~ 342 (923)
+.-.+|....++.- ....+.+|++.+.+.++.......+.--.|- .+.|+..+ +..|+.|++.+...
T Consensus 411 ~~~~s~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~d~~i~~~~~~~~~~ 479 (615)
T 1pgu_A 411 VASANNDGFTAVLT----------NDDDLLILQSFTGDIIKSVRLNSPGSAVSLS-QNYVAVGLEEGNTIQVFKLSDLEV 479 (615)
T ss_dssp EEEECSSSEEEEEE----------TTSEEEEEETTTCCEEEEEECSSCEEEEEEC-SSEEEEEETTTSCEEEEETTEEEE
T ss_pred EEEEcCCCCEEEEe----------CCCceEEEeccCCceeeecccCCCceEEEEc-CCEEEEeecCCCeEEEEECCCccc
Confidence 34456777666664 3567899998888888888877777777777 78888888 57899999965321
Q ss_pred chhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeeccccc
Q psy1644 343 PEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVER 393 (923)
Q Consensus 343 P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er 393 (923)
....+..| ...|..-..++++++++..+ -.|.+.+|+.+.
T Consensus 480 ~~~~~~~~----~~~v~~~~~s~~g~~l~~~~-------~dg~i~iw~~~~ 519 (615)
T 1pgu_A 480 SFDLKTPL----RAKPSYISISPSETYIAAGD-------VMGKILLYDLQS 519 (615)
T ss_dssp EEECSSCC----SSCEEEEEECTTSSEEEEEE-------TTSCEEEEETTT
T ss_pred cccccCCc----cCceEEEEECCCCCEEEEcC-------CCCeEEEeeCCC
Confidence 11222222 34688888899999887655 368899998853
No 19
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=97.18 E-value=0.025 Score=60.19 Aligned_cols=139 Identities=19% Similarity=0.372 Sum_probs=85.6
Q ss_pred CceEEEEECCCCC--CCcccccC----ccccccCCCcc-EEEEeccCCCCCCCCCCCeEEEEeccc-ccccccccC-CCc
Q psy1644 242 SAQVVIIDMNDPT--NPIRRPIS----ADSAIMNPASK-VIALKGKAGNDNNPNAPKTLQIFNIEM-KSKMKAHPM-TDD 312 (923)
Q Consensus 242 ~~qVvIVDL~n~~--~v~Rrpi~----ADSAIMnP~~~-IIALra~~~~~n~~~~g~~LQIFNle~-K~KLKs~~m-~E~ 312 (923)
...|.+.|+.... .+...--. .-+...||..+ ++|.=+ ...+|.|||+.+ +..+..+.- ...
T Consensus 253 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~---------~dg~v~vwd~~~~~~~~~~~~~h~~~ 323 (430)
T 2xyi_A 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS---------ADKTVALWDLRNLKLKLHSFESHKDE 323 (430)
T ss_dssp TSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEE---------TTSEEEEEETTCTTSCSEEEECCSSC
T ss_pred CCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEe---------CCCeEEEEeCCCCCCCeEEeecCCCC
Confidence 3478888887653 22211101 12445678765 565542 346899999998 555666543 566
Q ss_pred eeEEEeccCC--eEEEEe-cCeEEEEeccCCCC-----------chhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecc
Q psy1644 313 VVFWKWISPN--TLALVT-ETSVYHWSMEGDST-----------PEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAV 378 (923)
Q Consensus 313 VvfWkWis~~--tLglVT-~taVYHWsi~g~s~-----------P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~ 378 (923)
|.=-.|-... .|+-.+ +..|..|++..... |..+|.... ....|.....+++.+|+++.|=
T Consensus 324 v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~s--- 398 (430)
T 2xyi_A 324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWIICSVS--- 398 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC--CSSCEEEEEECSSSTTEEEEEE---
T ss_pred EEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCC--CCCCceEEEECCCCCCEEEEEE---
Confidence 7777887655 344443 45899999964221 232232111 1235888999999999888762
Q ss_pred cccccceeeeccccccccc
Q psy1644 379 SNRVVGAMQLYSVERKCSQ 397 (923)
Q Consensus 379 ~~~i~G~mQLYS~er~~SQ 397 (923)
-.|.+++|.+.+++-.
T Consensus 399 ---~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 399 ---EDNIMQVWQMAENVYN 414 (430)
T ss_dssp ---TTSEEEEEEECHHHHC
T ss_pred ---CCCCEEEeEccccccc
Confidence 3689999998765543
No 20
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.083 Score=53.57 Aligned_cols=131 Identities=5% Similarity=-0.038 Sum_probs=79.7
Q ss_pred ceEEEEECCCCCCCcccc---cCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC-CCceeEEEe
Q psy1644 243 AQVVIIDMNDPTNPIRRP---ISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM-TDDVVFWKW 318 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrp---i~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m-~E~VvfWkW 318 (923)
..|.+.|+.+........ -..-+...+|.. .++.=+ ....+.+||+++.+.+..+.. ..+|.--.|
T Consensus 269 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 338 (425)
T 1r5m_A 269 GTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS---------MDGSVRLWSLKQNTLLALSIVDGVPIFAGRI 338 (425)
T ss_dssp SCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE---------TTSEEEEEETTTTEEEEEEECTTCCEEEEEE
T ss_pred CEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe---------CCCcEEEEECCCCcEeEecccCCccEEEEEE
Confidence 467788877654332221 112345567777 444431 356899999999888887766 446666677
Q ss_pred ccC-CeEEEEec-CeEEEEeccCCCC-------------------chhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeec
Q psy1644 319 ISP-NTLALVTE-TSVYHWSMEGDST-------------------PEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISA 377 (923)
Q Consensus 319 is~-~tLglVT~-taVYHWsi~g~s~-------------------P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~ 377 (923)
-.+ +.|+..+. ..|+.|++..... +...|..|. .+..|.....++++++++..+
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~--- 413 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQ--DNDYIFDLSWNCAGNKISVAY--- 413 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTT--CCCCEEEEEECTTSSEEEEEE---
T ss_pred cCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcc--cCCceEEEEccCCCceEEEEe---
Confidence 654 45555553 4799999953221 222222211 011788888889999776554
Q ss_pred ccccccceeeecccc
Q psy1644 378 VSNRVVGAMQLYSVE 392 (923)
Q Consensus 378 ~~~~i~G~mQLYS~e 392 (923)
-.|.+.+|+++
T Consensus 414 ----~dg~i~iw~~~ 424 (425)
T 1r5m_A 414 ----SLQEGSVVAIP 424 (425)
T ss_dssp ----SSSCCEEEECC
T ss_pred ----cCceEEEEeec
Confidence 35778888764
No 21
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=97.14 E-value=0.3 Score=51.45 Aligned_cols=131 Identities=13% Similarity=0.193 Sum_probs=83.3
Q ss_pred ceEEEEECCCCCC---CcccccCcc----ccccCCC-ccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCcee
Q psy1644 243 AQVVIIDMNDPTN---PIRRPISAD----SAIMNPA-SKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVV 314 (923)
Q Consensus 243 ~qVvIVDL~n~~~---v~Rrpi~AD----SAIMnP~-~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~Vv 314 (923)
+.|.+.|+..... ..+...... +...+|. ..++|.-+- ..-+++.+||+.+.+.+........+.
T Consensus 252 ~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g-------s~D~~I~iwd~~t~~~~~~~~~~~~v~ 324 (420)
T 4gga_A 252 NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG-------TSDRHIRIWNVCSGACLSAVDAHSQVC 324 (420)
T ss_dssp SCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC-------TTTCEEEEEETTTTEEEEEEECSSCEE
T ss_pred ccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee-------cCCCEEEEEeCCccccceeecccccee
Confidence 3566677665432 122222222 2234564 456666420 123689999999999999998888888
Q ss_pred EEEeccCCe-EEEEe---cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecc
Q psy1644 315 FWKWISPNT-LALVT---ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYS 390 (923)
Q Consensus 315 fWkWis~~t-LglVT---~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS 390 (923)
-..|-.... |...+ +..|+.|++.. ..++..|.-|. ..|..-..++|+++++-.| -+|.+.+|.
T Consensus 325 ~~~~~~~~~~lv~~sg~~d~~I~iwd~~~-~~~v~~l~gH~----~~V~~l~~spdg~~l~S~s-------~D~tvriWd 392 (420)
T 4gga_A 325 SILWSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELKGHT----SRVLSLTMSPDGATVASAA-------ADETLRLWR 392 (420)
T ss_dssp EEEEETTTTEEEEEECTTTCCEEEEETTT-CCEEEEECCCS----SCEEEEEECTTSSCEEEEE-------TTTEEEEEC
T ss_pred eeeecCCCCeEEEEEecCCCEEEEEECCC-CcEEEEEcCCC----CCEEEEEEcCCCCEEEEEe-------cCCeEEEEE
Confidence 888876554 44443 35799999853 24454454442 3577777888988876443 468899998
Q ss_pred cc
Q psy1644 391 VE 392 (923)
Q Consensus 391 ~e 392 (923)
+.
T Consensus 393 v~ 394 (420)
T 4gga_A 393 CF 394 (420)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 22
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.13 E-value=0.099 Score=52.15 Aligned_cols=108 Identities=13% Similarity=0.237 Sum_probs=66.7
Q ss_pred cccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC---CCceeEEEeccCC--eEEEEe-cCeEEEEeccC
Q psy1644 266 AIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM---TDDVVFWKWISPN--TLALVT-ETSVYHWSMEG 339 (923)
Q Consensus 266 AIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m---~E~VvfWkWis~~--tLglVT-~taVYHWsi~g 339 (923)
...+|..+.++.=+ ....+++||+.+.+.++.+.- ....+++.|-.++ .|+-.+ +..|+.|++..
T Consensus 198 ~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 268 (312)
T 4ery_A 198 VKFSPNGKYILAAT---------LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 268 (312)
T ss_dssp EEECTTSSEEEEEE---------TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT
T ss_pred EEECCCCCEEEEEc---------CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC
Confidence 45788887777642 346899999998876665543 2234455554333 333332 34799999964
Q ss_pred CCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecccc
Q psy1644 340 DSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVE 392 (923)
Q Consensus 340 ~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~e 392 (923)
. ...+.+..|. .-|..-..++++++++..+.. -+|.+.+|..+
T Consensus 269 ~-~~~~~~~~h~----~~v~~~~~~p~~~~l~s~~~~-----~d~~i~~W~~d 311 (312)
T 4ery_A 269 K-EIVQKLQGHT----DVVISTACHPTENIIASAALE-----NDKTIKLWKSD 311 (312)
T ss_dssp C-CEEEEECCCS----SCEEEEEECSSSSEEEEEECT-----TTCCEEEEECC
T ss_pred c-hhhhhhhccC----CcEEEEeecCcCCceEEEEcc-----CCccEEEecCC
Confidence 3 2334444443 247777788888887766543 25678888754
No 23
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.09 E-value=0.13 Score=50.55 Aligned_cols=86 Identities=9% Similarity=0.071 Sum_probs=55.6
Q ss_pred ceEEEEECCCCCCCcccc--cCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEecc
Q psy1644 243 AQVVIIDMNDPTNPIRRP--ISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWIS 320 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrp--i~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis 320 (923)
..|.++|+.++....... -..-+...+|..+.++.-+ ....+.+||+++.+.+........|.--.|-.
T Consensus 246 ~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~ 316 (337)
T 1gxr_A 246 SNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG---------KDNLLNAWRTPYGASIFQSKESSSVLSCDISV 316 (337)
T ss_dssp SCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEE---------TTSEEEEEETTTCCEEEEEECSSCEEEEEECT
T ss_pred CcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEec---------CCCcEEEEECCCCeEEEEecCCCcEEEEEECC
Confidence 367777877654221111 1122455788888777652 34689999999998887766677787778876
Q ss_pred CCe-EEEEec-CeEEEEec
Q psy1644 321 PNT-LALVTE-TSVYHWSM 337 (923)
Q Consensus 321 ~~t-LglVT~-taVYHWsi 337 (923)
+.. |+..+. ..|+.|++
T Consensus 317 ~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 317 DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TSCEEEEEETTSCEEEEEE
T ss_pred CCCEEEEecCCCeEEEEEE
Confidence 554 443333 36888986
No 24
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=97.06 E-value=0.099 Score=54.22 Aligned_cols=122 Identities=11% Similarity=0.176 Sum_probs=81.7
Q ss_pred cccccCCCc-cEEEEeccCCCCCCCCCCCeEEEEecccccc----cccccCCC-------------ceeEEEeccCC-eE
Q psy1644 264 DSAIMNPAS-KVIALKGKAGNDNNPNAPKTLQIFNIEMKSK----MKAHPMTD-------------DVVFWKWISPN-TL 324 (923)
Q Consensus 264 DSAIMnP~~-~IIALra~~~~~n~~~~g~~LQIFNle~K~K----LKs~~m~E-------------~VvfWkWis~~-tL 324 (923)
-+...+|.. +++|.=+ ...++.+||+.+.+. ++.+...+ .|.--.|-.+. .|
T Consensus 230 ~~~~~~p~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 300 (447)
T 3dw8_B 230 TAAEFHPNSCNTFVYSS---------SKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYM 300 (447)
T ss_dssp EEEEECSSCTTEEEEEE---------TTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEE
T ss_pred EEEEECCCCCcEEEEEe---------CCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEE
Confidence 356678886 7777652 346899999998876 55555554 67777786543 56
Q ss_pred EEEecCeEEEEeccCCCCchhhhhcccCCCCC-----------eeEeeeeCCCCCeEEEEeeecccccccceeeeccccc
Q psy1644 325 ALVTETSVYHWSMEGDSTPEKMFDRHSTLNGC-----------QIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVER 393 (923)
Q Consensus 325 glVT~taVYHWsi~g~s~P~K~FdR~~~L~~~-----------QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er 393 (923)
+-.+...|..|++..+..|.+.|.-|..+... -+..-.-++++++++..| -.|.+.+|.++.
T Consensus 301 ~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s-------~dg~v~iwd~~~ 373 (447)
T 3dw8_B 301 MTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS-------YNNFFRMFDRNT 373 (447)
T ss_dssp EEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC-------STTEEEEEETTT
T ss_pred EEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEec-------cCCEEEEEEcCC
Confidence 66666799999998767788888777544320 122245678888874333 468899999876
Q ss_pred cccccccc
Q psy1644 394 KCSQPIEE 401 (923)
Q Consensus 394 ~~SQ~iEG 401 (923)
+..-.+++
T Consensus 374 ~~~~~~~~ 381 (447)
T 3dw8_B 374 KRDITLEA 381 (447)
T ss_dssp CCEEEEEC
T ss_pred Ccceeeee
Confidence 55444544
No 25
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.23 Score=50.37 Aligned_cols=132 Identities=14% Similarity=0.189 Sum_probs=87.6
Q ss_pred CceEEEEECCCCCCCcccc---cCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccccccccc-CCCceeEEE
Q psy1644 242 SAQVVIIDMNDPTNPIRRP---ISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHP-MTDDVVFWK 317 (923)
Q Consensus 242 ~~qVvIVDL~n~~~v~Rrp---i~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~-m~E~VvfWk 317 (923)
...|.+.|+.......... -..-+...+|..+.+|.-+ ....+.+|++++...+..+. ....|.--.
T Consensus 226 ~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 296 (425)
T 1r5m_A 226 KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS---------DDGTLRIWHGGNGNSQNCFYGHSQSIVSAS 296 (425)
T ss_dssp GGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE---------TTSCEEEECSSSBSCSEEECCCSSCEEEEE
T ss_pred CCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc---------CCCEEEEEECCCCccceEecCCCccEEEEE
Confidence 3479999998764432221 1122455788887777752 34689999999988777765 456788888
Q ss_pred eccCCeEEEEe-cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecccccc
Q psy1644 318 WISPNTLALVT-ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERK 394 (923)
Q Consensus 318 Wis~~tLglVT-~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~ 394 (923)
|-.+..++..+ +..|+.|++... .+...+..| ...|..-..++++++++..+ -.|.+.+|+.+..
T Consensus 297 ~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~-------~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 297 WVGDDKVISCSMDGSVRLWSLKQN-TLLALSIVD----GVPIFAGRISQDGQKYAVAF-------MDGQVNVYDLKKL 362 (425)
T ss_dssp EETTTEEEEEETTSEEEEEETTTT-EEEEEEECT----TCCEEEEEECTTSSEEEEEE-------TTSCEEEEECHHH
T ss_pred ECCCCEEEEEeCCCcEEEEECCCC-cEeEecccC----CccEEEEEEcCCCCEEEEEE-------CCCeEEEEECCCC
Confidence 88776555444 348999998543 233333332 34677777888888876654 3578899988654
No 26
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.31 Score=48.72 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=77.7
Q ss_pred ceEEEEECCCCCCCccccc-----CccccccCC-------------CccEEEEeccCCCCCCCCCCCeEEEEeccccccc
Q psy1644 243 AQVVIIDMNDPTNPIRRPI-----SADSAIMNP-------------ASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKM 304 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrpi-----~ADSAIMnP-------------~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KL 304 (923)
..|.+.|+..........+ ..-+...+| ..+.+|.=+ ....+.+||+++....
T Consensus 125 ~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~ 195 (379)
T 3jrp_A 125 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG---------ADNLVKIWKYNSDAQT 195 (379)
T ss_dssp SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEE---------TTSCEEEEEEETTTTE
T ss_pred CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe---------CCCeEEEEEecCCCcc
Confidence 3677777766543322211 122455666 355555542 3468999999876533
Q ss_pred cc----cc-CCCceeEEEeccC----CeEEEEe-cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEe
Q psy1644 305 KA----HP-MTDDVVFWKWISP----NTLALVT-ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIG 374 (923)
Q Consensus 305 Ks----~~-m~E~VvfWkWis~----~tLglVT-~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvG 374 (923)
.. .. ....|.--.|-.+ +.|+..+ +..|..|++.....|...--....-....|..-..++++++++..|
T Consensus 196 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 196 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 275 (379)
T ss_dssp EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence 21 11 1456666777665 3455554 3479999997644332211111111234677778888999877655
Q ss_pred eecccccccceeeeccccc
Q psy1644 375 ISAVSNRVVGAMQLYSVER 393 (923)
Q Consensus 375 I~~~~~~i~G~mQLYS~er 393 (923)
-.|.+.+|.++.
T Consensus 276 -------~dg~i~iw~~~~ 287 (379)
T 3jrp_A 276 -------GDNKVTLWKENL 287 (379)
T ss_dssp -------SSSSEEEEEEEE
T ss_pred -------CCCcEEEEeCCC
Confidence 368899999864
No 27
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.15 Score=52.14 Aligned_cols=133 Identities=11% Similarity=0.176 Sum_probs=81.3
Q ss_pred ceEEEEECCCCCCCccccc---------CccccccCCCc-cEEEEeccCCCCCCCCCCC---eEEEEecccc-ccccccc
Q psy1644 243 AQVVIIDMNDPTNPIRRPI---------SADSAIMNPAS-KVIALKGKAGNDNNPNAPK---TLQIFNIEMK-SKMKAHP 308 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrpi---------~ADSAIMnP~~-~IIALra~~~~~n~~~~g~---~LQIFNle~K-~KLKs~~ 308 (923)
..|.+.|+.....+..... ..-+...+|.. .++|.=+ ... .+.+||+++. ..++.+.
T Consensus 188 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---------~d~~~~~i~~~d~~~~~~~~~~~~ 258 (416)
T 2pm9_A 188 NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT---------GSDNDPSILIWDLRNANTPLQTLN 258 (416)
T ss_dssp SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE---------CCSSSCCCCEEETTSTTSCSBCCC
T ss_pred CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEE---------CCCCCceEEEEeCCCCCCCcEEee
Confidence 3577777765443222211 23355678875 5666642 223 8999999985 4555554
Q ss_pred --CCCceeEEEecc--CCeEEEEec-CeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeeccccccc
Q psy1644 309 --MTDDVVFWKWIS--PNTLALVTE-TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVV 383 (923)
Q Consensus 309 --m~E~VvfWkWis--~~tLglVT~-taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~ 383 (923)
....|.--.|-. .+.|+..+. ..|+.|++... .+...|..|. ..|..-..+++..+++++|- -.
T Consensus 259 ~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~----~~v~~~~~s~~~~~~l~s~~------~d 327 (416)
T 2pm9_A 259 QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-EQLSQFPARG----NWCFKTKFAPEAPDLFACAS------FD 327 (416)
T ss_dssp SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC-CEEEEEECSS----SCCCCEEECTTCTTEEEECC------SS
T ss_pred cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC-ccceeecCCC----CceEEEEECCCCCCEEEEEe------cC
Confidence 456788888864 566666664 58999998643 3444444433 34556667777755555542 36
Q ss_pred ceeeeccccccc
Q psy1644 384 GAMQLYSVERKC 395 (923)
Q Consensus 384 G~mQLYS~er~~ 395 (923)
|.+.+|+++...
T Consensus 328 ~~i~iw~~~~~~ 339 (416)
T 2pm9_A 328 NKIEVQTLQNLT 339 (416)
T ss_dssp SEEEEEESCCCC
T ss_pred CcEEEEEccCCC
Confidence 889999987543
No 28
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.065 Score=54.78 Aligned_cols=134 Identities=12% Similarity=0.226 Sum_probs=81.2
Q ss_pred eEEEEECCCCCCCccccc----CccccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccccc-ccccC--CCceeEE
Q psy1644 244 QVVIIDMNDPTNPIRRPI----SADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKM-KAHPM--TDDVVFW 316 (923)
Q Consensus 244 qVvIVDL~n~~~v~Rrpi----~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KL-Ks~~m--~E~VvfW 316 (923)
.|.+.|+........... ..-+.-.||..+++|.=+ ....++|||+++.+.+ ..+.. ..+|.--
T Consensus 150 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~---------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l 220 (343)
T 3lrv_A 150 TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYS---------PDGILDVYNLSSPDQASSRFPVDEEAKIKEV 220 (343)
T ss_dssp CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEEC---------TTSCEEEEESSCTTSCCEECCCCTTSCEEEE
T ss_pred cEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEc---------CCCEEEEEECCCCCCCccEEeccCCCCEEEE
Confidence 566666655443211111 133566899999998842 3568999999998877 55655 5677777
Q ss_pred EeccC-CeEEEEecCeEEEEeccCCCCchhhhhcccCCCCCee--EeeeeCCCCCeEEEEeeecccccccceeeeccccc
Q psy1644 317 KWISP-NTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQI--INYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVER 393 (923)
Q Consensus 317 kWis~-~tLglVT~taVYHWsi~g~s~P~K~FdR~~~L~~~QI--InYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er 393 (923)
.|-.+ ..|+-.++..|..|++.....+. .+..+.. ....+ ....-++++++++..+- -.|.+.+|..++
T Consensus 221 ~fs~~g~~l~s~~~~~v~iwd~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~s~------~d~~i~v~~~~~ 292 (343)
T 3lrv_A 221 KFADNGYWMVVECDQTVVCFDLRKDVGTL-AYPTYTI-PEFKTGTVTYDIDDSGKNMIAYSN------ESNSLTIYKFDK 292 (343)
T ss_dssp EECTTSSEEEEEESSBEEEEETTSSTTCB-SSCCCBC------CCEEEEECTTSSEEEEEET------TTTEEEEEEECT
T ss_pred EEeCCCCEEEEEeCCeEEEEEcCCCCcce-eeccccc-ccccccceEEEECCCCCEEEEecC------CCCcEEEEEEcc
Confidence 77644 46777778899999996543322 1211100 00111 23667888888876541 145788887765
Q ss_pred c
Q psy1644 394 K 394 (923)
Q Consensus 394 ~ 394 (923)
.
T Consensus 293 ~ 293 (343)
T 3lrv_A 293 K 293 (343)
T ss_dssp T
T ss_pred c
Confidence 4
No 29
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=96.88 E-value=0.28 Score=49.56 Aligned_cols=109 Identities=6% Similarity=-0.072 Sum_probs=65.6
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC-----C--CceeEEEec-cCCeEEEEecCeEEEEe
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM-----T--DDVVFWKWI-SPNTLALVTETSVYHWS 336 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m-----~--E~VvfWkWi-s~~tLglVT~taVYHWs 336 (923)
+...+|..+.+|.=+ ....+.+||+++.+.+..... . ....-+.+- +...+..-.+..|+.|+
T Consensus 250 ~~~~~~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d 320 (408)
T 4a11_B 250 GLCFTSDGLHLLTVG---------TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYT 320 (408)
T ss_dssp EEEECTTSSEEEEEE---------TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEE
T ss_pred EEEEcCCCCEEEEec---------CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEE
Confidence 345678777666642 345799999998776543221 1 111112222 34445555667999999
Q ss_pred ccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecccccc
Q psy1644 337 MEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERK 394 (923)
Q Consensus 337 i~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~ 394 (923)
+... .+...|.-|. ..|..-..++++++++..| -.|.+.+|+.+..
T Consensus 321 ~~~~-~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~-------~dg~i~iw~~~~~ 366 (408)
T 4a11_B 321 VYSG-EQITMLKGHY----KTVDCCVFQSNFQELYSGS-------RDCNILAWVPSLY 366 (408)
T ss_dssp TTTC-CEEEEECCCS----SCEEEEEEETTTTEEEEEE-------TTSCEEEEEECC-
T ss_pred CcCC-cceeeeccCC----CeEEEEEEcCCCCEEEEEC-------CCCeEEEEeCCCC
Confidence 8643 3444443332 3577777788888876544 4689999997653
No 30
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.88 E-value=0.19 Score=52.97 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=74.5
Q ss_pred ceEEEEECCCCCCCcccc---cCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCC-CceeEEEe
Q psy1644 243 AQVVIIDMNDPTNPIRRP---ISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMT-DDVVFWKW 318 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrp---i~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~-E~VvfWkW 318 (923)
..|.+.|+.+...+.+.. -..-+..++|..+.+|.=+ ....+++||+++.+.++.+.-. ..|.-..|
T Consensus 290 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~---------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 360 (464)
T 3v7d_B 290 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS---------MDTTIRIWDLENGELMYTLQGHTALVGLLRL 360 (464)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE---------TTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred CeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCcEEEEEeCCCCcEEEEEE
Confidence 468888886544322211 1122455778877766542 3468999999998888877654 44555555
Q ss_pred ccCCeEEEEecC-eEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeeccccc
Q psy1644 319 ISPNTLALVTET-SVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVER 393 (923)
Q Consensus 319 is~~tLglVT~t-aVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er 393 (923)
+++.|+-.+.. .|..|++...... +.-+.. ....++.+ ++++++++..+ .|.+.+|+.+.
T Consensus 361 -~~~~l~s~s~dg~v~vwd~~~~~~~---~~~~~~-~~~~~~~~--~~~~~~l~~~~--------dg~i~iwd~~~ 421 (464)
T 3v7d_B 361 -SDKFLVSAAADGSIRGWDANDYSRK---FSYHHT-NLSAITTF--YVSDNILVSGS--------ENQFNIYNLRS 421 (464)
T ss_dssp -CSSEEEEEETTSEEEEEETTTCCEE---EEEECT-TCCCEEEE--EECSSEEEEEE--------TTEEEEEETTT
T ss_pred -cCCEEEEEeCCCcEEEEECCCCcee---eeecCC-CCccEEEE--EeCCCEEEEec--------CCeEEEEECCC
Confidence 67777777654 8999999753322 222110 11223333 44555543321 47899999765
No 31
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.42 Score=47.44 Aligned_cols=97 Identities=8% Similarity=0.072 Sum_probs=58.8
Q ss_pred ceEEEEECCCCCCCccc--ccCccccccCCCccEEEEeccCCCC-----CCCCCCCeEEEEecccccccccccC-CCcee
Q psy1644 243 AQVVIIDMNDPTNPIRR--PISADSAIMNPASKVIALKGKAGND-----NNPNAPKTLQIFNIEMKSKMKAHPM-TDDVV 314 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rr--pi~ADSAIMnP~~~IIALra~~~~~-----n~~~~g~~LQIFNle~K~KLKs~~m-~E~Vv 314 (923)
..|.++|+.+....... +-..-+...+|..+.++.-+.-.+. ........+++||+.+.+.+..+.- ...|.
T Consensus 240 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~ 319 (369)
T 3zwl_B 240 TNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLN 319 (369)
T ss_dssp SEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEE
T ss_pred ceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEE
Confidence 36778887765433222 2223456778998888876321000 0000112799999999888877654 45677
Q ss_pred EEEeccCC-eEEEEe-cCeEEEEeccC
Q psy1644 315 FWKWISPN-TLALVT-ETSVYHWSMEG 339 (923)
Q Consensus 315 fWkWis~~-tLglVT-~taVYHWsi~g 339 (923)
--.|-.+. .|+-.+ +..|..|+++.
T Consensus 320 ~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 320 TVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 78887544 455554 45899999964
No 32
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.88 E-value=0.092 Score=54.65 Aligned_cols=103 Identities=12% Similarity=0.226 Sum_probs=66.3
Q ss_pred cceEEEEEeccCCCceEEEEECCCCCCCc-ccccCcc----ccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccc-
Q psy1644 229 SDKFICVREKIAESAQVVIIDMNDPTNPI-RRPISAD----SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKS- 302 (923)
Q Consensus 229 SDkyICVRE~~~~~~qVvIVDL~n~~~v~-Rrpi~AD----SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~- 302 (923)
.++++.+--......+|.+.|+.+...+. ...+... +...+|..+.+++=|. ....+.+|++++.+
T Consensus 231 ~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~--------~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 231 EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGK--------GDSSIRYFEITSEAP 302 (402)
T ss_dssp TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEET--------TCSCEEEEEECSSTT
T ss_pred CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEc--------CCCeEEEEEecCCCc
Confidence 45566554222345589999998876533 2333333 3445788888877642 24689999999877
Q ss_pred ---ccccccCCCceeEEEeccCCeEEEEecCeEEEEeccC
Q psy1644 303 ---KMKAHPMTDDVVFWKWISPNTLALVTETSVYHWSMEG 339 (923)
Q Consensus 303 ---KLKs~~m~E~VvfWkWis~~tLglVT~taVYHWsi~g 339 (923)
.+..|....+|.=-.|..+..+.+.+...+..|++..
T Consensus 303 ~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 303 FLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHE 342 (402)
T ss_dssp CEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEET
T ss_pred ceEeecccccCCcccceEEecccccceecceeEEEEEcCC
Confidence 4666665677777778776665444555677887753
No 33
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.87 E-value=0.28 Score=49.95 Aligned_cols=113 Identities=13% Similarity=0.142 Sum_probs=75.7
Q ss_pred ccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC-------CCceeEEEeccC-CeEEEEecC----
Q psy1644 263 ADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM-------TDDVVFWKWISP-NTLALVTET---- 330 (923)
Q Consensus 263 ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m-------~E~VvfWkWis~-~tLglVT~t---- 330 (923)
.-+...+|.. .++.=+ ....+.+||+++.+.+..+.. ..+|.--.|-.+ +.|+..+..
T Consensus 189 i~~~~~~~~~-~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g 258 (397)
T 1sq9_A 189 ATSVDISERG-LIATGF---------NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 258 (397)
T ss_dssp CCEEEECTTS-EEEEEC---------TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEE
T ss_pred ceEEEECCCc-eEEEEe---------CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCc
Confidence 3456678888 666542 346899999999888888776 677888888744 556655554
Q ss_pred eEEEEeccCCCCchhhhhccc--------CC-CCCeeEeeeeCCCCCeEEEEeeecccccccceeeeccccc
Q psy1644 331 SVYHWSMEGDSTPEKMFDRHS--------TL-NGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVER 393 (923)
Q Consensus 331 aVYHWsi~g~s~P~K~FdR~~--------~L-~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er 393 (923)
.|+.|++... .+...|.-.. .. ....|..-..+++++|++..+ -.|.+.+|.++.
T Consensus 259 ~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~ 322 (397)
T 1sq9_A 259 CITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-------WDGKLRFWDVKT 322 (397)
T ss_dssp EEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE-------TTSEEEEEETTT
T ss_pred eEEEEECCCC-cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe-------CCCeEEEEEcCC
Confidence 8999998643 2333333200 00 134677778888999876654 357888888753
No 34
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.066 Score=54.79 Aligned_cols=131 Identities=21% Similarity=0.319 Sum_probs=88.6
Q ss_pred ceEEEEECCCCC------CCccc------ccCccccccCCC-ccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC
Q psy1644 243 AQVVIIDMNDPT------NPIRR------PISADSAIMNPA-SKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM 309 (923)
Q Consensus 243 ~qVvIVDL~n~~------~v~Rr------pi~ADSAIMnP~-~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m 309 (923)
..|.+.|+.... .+.+. .-..-+...+|. .+++|.=+ ....+.+||+++.+.+..+..
T Consensus 136 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---------~dg~v~iwd~~~~~~~~~~~~ 206 (416)
T 2pm9_A 136 GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG---------SSNFASIWDLKAKKEVIHLSY 206 (416)
T ss_dssp SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES---------SSSCEEEEETTTTEEEEEECC
T ss_pred CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc---------CCCCEEEEECCCCCcceEEec
Confidence 467777877665 22211 112234556787 66777642 346899999999888877776
Q ss_pred -------CCceeEEEeccC--CeEEEEecC----eEEEEeccCCCCchhhhh-cccCCCCCeeEeeeeCC-CCCeEEEEe
Q psy1644 310 -------TDDVVFWKWISP--NTLALVTET----SVYHWSMEGDSTPEKMFD-RHSTLNGCQIINYRTDP-KQTWLLLIG 374 (923)
Q Consensus 310 -------~E~VvfWkWis~--~tLglVT~t----aVYHWsi~g~s~P~K~Fd-R~~~L~~~QIInYr~d~-~~kW~~LvG 374 (923)
...|.--.|-.+ ..++..+.. .|+.|++.....|.+.+. -|. ..|..-..++ ++++++..+
T Consensus 207 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~~l~s~~ 282 (416)
T 2pm9_A 207 TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQ----KGILSLDWCHQDEHLLLSSG 282 (416)
T ss_dssp CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCS----SCEEEEEECSSCSSCEEEEE
T ss_pred cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCcc----CceeEEEeCCCCCCeEEEEe
Confidence 456777788765 367777766 899999987667777766 442 3566777777 777776554
Q ss_pred eecccccccceeeeccccc
Q psy1644 375 ISAVSNRVVGAMQLYSVER 393 (923)
Q Consensus 375 I~~~~~~i~G~mQLYS~er 393 (923)
-.|.+.+|..+.
T Consensus 283 -------~dg~v~~wd~~~ 294 (416)
T 2pm9_A 283 -------RDNTVLLWNPES 294 (416)
T ss_dssp -------SSSEEEEECSSS
T ss_pred -------CCCCEEEeeCCC
Confidence 357888998764
No 35
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.81 E-value=0.11 Score=53.69 Aligned_cols=110 Identities=13% Similarity=0.074 Sum_probs=72.0
Q ss_pred cccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC--CCceeEEEeccCC--eEEEEec-CeEEEEecc
Q psy1644 264 DSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM--TDDVVFWKWISPN--TLALVTE-TSVYHWSME 338 (923)
Q Consensus 264 DSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m--~E~VvfWkWis~~--tLglVT~-taVYHWsi~ 338 (923)
-+...+|..+.||.=+ ....+.+||+.+..++..... ...|.--.|-.+. .|+..+. ..|+.|++.
T Consensus 251 ~~~~~s~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 321 (420)
T 3vl1_A 251 NNLEFGTYGKYVIAGH---------VSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR 321 (420)
T ss_dssp CTTCSSCTTEEEEEEE---------TTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred cceEEcCCCCEEEEEc---------CCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence 3456788888887752 345799999999887776643 4567777887665 4555554 489999998
Q ss_pred CCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeeccccc
Q psy1644 339 GDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVER 393 (923)
Q Consensus 339 g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er 393 (923)
....|...+..|.. ..+.-...++.++++..| -.|.+.+|.++.
T Consensus 322 ~~~~~~~~~~~~~~----~~v~~~~~~~~~~l~s~~-------~d~~v~iw~~~~ 365 (420)
T 3vl1_A 322 SPECPVGEFLINEG----TPINNVYFAAGALFVSSG-------FDTSIKLDIISD 365 (420)
T ss_dssp CTTSCSEEEEESTT----SCEEEEEEETTEEEEEET-------TTEEEEEEEECC
T ss_pred CCcCchhhhhccCC----CCceEEEeCCCCEEEEec-------CCccEEEEeccC
Confidence 76667766665432 122222334555544332 468899999765
No 36
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=96.81 E-value=0.25 Score=50.36 Aligned_cols=113 Identities=16% Similarity=0.173 Sum_probs=75.0
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEeccC-CeEEEEecCeEEEEeccCCCCc
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISP-NTLALVTETSVYHWSMEGDSTP 343 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis~-~tLglVT~taVYHWsi~g~s~P 343 (923)
+...+|..+.||-=+ ...+++|||+.+++.+......++|.-=.|-.+ ..|+..+...+..|+++.....
T Consensus 201 ~~~~sp~g~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~ 271 (319)
T 3frx_A 201 TLTASPDGTLIASAG---------KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271 (319)
T ss_dssp EEEECTTSSEEEEEE---------TTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEE
T ss_pred EEEEcCCCCEEEEEe---------CCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeee
Confidence 455788888887753 346899999999999988888777776666543 4577778888999998642211
Q ss_pred hh---hhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeeccccc
Q psy1644 344 EK---MFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVER 393 (923)
Q Consensus 344 ~K---~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er 393 (923)
.. -|..+..-....+..-.-++|+++++..+ -+|.+.+|.+..
T Consensus 272 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~-------~Dg~i~vWd~~t 317 (319)
T 3frx_A 272 DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY-------TDNVIRVWQVMT 317 (319)
T ss_dssp EEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE-------TTSCEEEEEEEE
T ss_pred eccCccccccccCcCcceeEEEECCCCCEEEEee-------cCceEEEEEEee
Confidence 10 01111111234567777788999876433 467888887643
No 37
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.80 E-value=0.11 Score=52.02 Aligned_cols=261 Identities=13% Similarity=0.097 Sum_probs=137.1
Q ss_pred CCcceeEEeccccceEEEEe-------eeeeEEEEecccceeeeecccCCCcEEEeeccCCCcceEEEecCCcceeeeee
Q psy1644 62 NDFPVAMQVSAKYDVVYLIT-------KFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGLTNVGINVGSVSF 134 (923)
Q Consensus 62 ~DFPvamqiS~k~G~iyliT-------K~G~lhl~Dlet~t~iy~~rIS~~~if~ta~~~~t~Gil~vn~~G~~~~si~~ 134 (923)
.+-|.++.+|..-+.+|+.+ +.|.|++||.+|+..+..-...... . -+.++..| +-..++-
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~----------~-~~~~s~dg-~~l~v~~ 107 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKP----------F-GATINNTT-QTLWFGN 107 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCC----------C-SEEEETTT-TEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCc----------c-eEEECCCC-CEEEEEe
Confidence 56788899999888999988 4678999999999876543322111 0 12222222 1111110
Q ss_pred eceeecccceeEEEecccccceEEEEecCCC-----------CCC-CccCccccccccCcccchhhhcCCCC-----CCC
Q psy1644 135 NTLTMESDKFICVREKIAESAQVVIIDMNDP-----------TNP-IRRPISADSAIMNPASKVIALKGKAG-----NDN 197 (923)
Q Consensus 135 ~t~tm~sdk~ic~~~~~~~~~~vviid~~~~-----------~~~-~r~~~~a~~~im~p~~~i~al~~~~~-----~~~ 197 (923)
. +..+|.++|+... .+| .-.|.....+..+|..+.+..=+... --+
T Consensus 108 ---------------~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 108 ---------------T--VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp ---------------T--TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred ---------------c--CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 0 1123444443322 111 01122223345566655443322110 001
Q ss_pred CCCcccceeeeccccccccCCcccccceeeecceEEEEEeccCCCceEEEEECCCCCCCcccccCcc-------ccccCC
Q psy1644 198 NPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISAD-------SAIMNP 270 (923)
Q Consensus 198 ~~~~~~~~e~~~Lt~lGI~~~si~F~~lTmESDkyICVRE~~~~~~qVvIVDL~n~~~v~Rrpi~AD-------SAIMnP 270 (923)
...++.. -.+...|-.+..+.|. ...+++.+-.. ...|.++|+.+.....+.+...+ +...+|
T Consensus 171 ~~~~~~~---~~~~~~~~~~~~~~~s----~dg~~l~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 240 (353)
T 3vgz_A 171 GGNIKLK---TAIQNTGKMSTGLALD----SEGKRLYTTNA---DGELITIDTADNKILSRKKLLDDGKEHFFINISLDT 240 (353)
T ss_dssp TTTTEEE---EEECCCCTTCCCCEEE----TTTTEEEEECT---TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred CCCCceE---EEecCCCCccceEEEC----CCCCEEEEEcC---CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence 1222222 1222234444444432 12355555432 45899999987655444444221 246788
Q ss_pred CccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEeccCCeEEEEec---CeEEEEeccCCCCchhhh
Q psy1644 271 ASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE---TSVYHWSMEGDSTPEKMF 347 (923)
Q Consensus 271 ~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis~~tLglVT~---taVYHWsi~g~s~P~K~F 347 (923)
..+.+.+-. ..+..+.+||+++.+.++.....++. -..|-.+....+|+. ..|+.|+..... ..+.+
T Consensus 241 dg~~l~~~~--------~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-~~~~~ 310 (353)
T 3vgz_A 241 ARQRAFITD--------SKAAEVLVVDTRNGNILAKVAAPESL-AVLFNPARNEAYVTHRQAGKVSVIDAKSYK-VVKTF 310 (353)
T ss_dssp TTTEEEEEE--------SSSSEEEEEETTTCCEEEEEECSSCC-CEEEETTTTEEEEEETTTTEEEEEETTTTE-EEEEE
T ss_pred CCCEEEEEe--------CCCCEEEEEECCCCcEEEEEEcCCCc-eEEECCCCCEEEEEECCCCeEEEEECCCCe-EEEEE
Confidence 877555542 13478999999999888888876653 345555555444544 589999875321 12222
Q ss_pred hcccCCCCCeeEeeeeCCCCCeEEEEeee
Q psy1644 348 DRHSTLNGCQIINYRTDPKQTWLLLIGIS 376 (923)
Q Consensus 348 dR~~~L~~~QIInYr~d~~~kW~~LvGI~ 376 (923)
.- +....+...+++++++.+.+-.
T Consensus 311 ~~-----~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 311 DT-----PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EC-----CSEEEEEEECTTSCEEEEEEEC
T ss_pred ec-----CCCCCeEEEcCCCCEEEEEEcc
Confidence 11 2356667778899887765533
No 38
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.17 Score=49.29 Aligned_cols=129 Identities=9% Similarity=0.131 Sum_probs=80.9
Q ss_pred ceEEEEECCCCCCCccc--ccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC-CCceeEEEec
Q psy1644 243 AQVVIIDMNDPTNPIRR--PISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM-TDDVVFWKWI 319 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rr--pi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m-~E~VvfWkWi 319 (923)
..|.+.|........+. +-..-+...+|..++++-- ....+.+||+++.+.+..+.. ...|.-=.|-
T Consensus 165 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 165 KTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCS----------NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp SCEEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEE----------TTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred CCEEEEecCceEEEEeccCcccEEEEEEcCCCeEEEcc----------CCCeEEEEECCchhhhhhhhcCCceEEEEEEe
Confidence 36777773332221111 1112345567777744433 456899999999888888764 5567777887
Q ss_pred cCCeEEEEec-CeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecccccc
Q psy1644 320 SPNTLALVTE-TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERK 394 (923)
Q Consensus 320 s~~tLglVT~-taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~ 394 (923)
.+..|+..+. ..|+.|++... .+.+.+..| ...|..-..+++++. ++| .-.|.+.+|.++.+
T Consensus 235 ~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~--~~~------~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 235 PNGDIVSCGEDRTVRIWSKENG-SLKQVITLP----AISIWSVDCMSNGDI--IVG------SSDNLVRIFSQEKS 297 (313)
T ss_dssp TTSCEEEEETTSEEEEECTTTC-CEEEEEECS----SSCEEEEEECTTSCE--EEE------ETTSCEEEEESCGG
T ss_pred cCCCEEEEecCCEEEEEECCCC-ceeEEEecc----CceEEEEEEccCCCE--EEE------eCCCcEEEEeCCCC
Confidence 7766665553 48999998643 344445444 236777778888882 233 23688999998654
No 39
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.78 E-value=0.31 Score=49.59 Aligned_cols=88 Identities=13% Similarity=0.168 Sum_probs=61.7
Q ss_pred ceEEEEECCCCCCCccccc----------------CccccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccccccc
Q psy1644 243 AQVVIIDMNDPTNPIRRPI----------------SADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKA 306 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrpi----------------~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs 306 (923)
..|.++|+.+...+....- ..-+...+|..+.||.=+ ....|.|||+++.+.+..
T Consensus 258 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~ 328 (397)
T 1sq9_A 258 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG---------WDGKLRFWDVKTKERITT 328 (397)
T ss_dssp EEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE---------TTSEEEEEETTTTEEEEE
T ss_pred ceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe---------CCCeEEEEEcCCCceeEE
Confidence 5889999887643322211 112456678887777652 346899999999988888
Q ss_pred cc------C----------------CCceeEEEeccC-----------CeEEEEe-cCeEEEEeccC
Q psy1644 307 HP------M----------------TDDVVFWKWISP-----------NTLALVT-ETSVYHWSMEG 339 (923)
Q Consensus 307 ~~------m----------------~E~VvfWkWis~-----------~tLglVT-~taVYHWsi~g 339 (923)
+. - ...|.--.|..+ +.|+-.+ +..|..|++.+
T Consensus 329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 329 LNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp EECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred EecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 77 2 577888899888 4666665 45899999854
No 40
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.75 E-value=0.46 Score=48.67 Aligned_cols=126 Identities=8% Similarity=0.091 Sum_probs=72.2
Q ss_pred ceEEEEECCCCCCCccc---ccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCC---CceeEE
Q psy1644 243 AQVVIIDMNDPTNPIRR---PISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMT---DDVVFW 316 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rr---pi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~---E~VvfW 316 (923)
..|.+.|+......... .-..-+...+|..+.+|.=+ ...++.+||+.+.+.+..+... ..|.--
T Consensus 206 ~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s---------~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS---------DDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE---------TTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc---------CCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence 46777777654322111 01122455788888887642 3468999999988777665443 246556
Q ss_pred EeccCCeEEEE-ec-CeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeec
Q psy1644 317 KWISPNTLALV-TE-TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389 (923)
Q Consensus 317 kWis~~tLglV-T~-taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLY 389 (923)
.|-.+..+-++ +. ..|..|++... .+...+.-|. ..|..-..++++++++-.| -+|.+.+|
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~~~h~----~~v~~~~~s~dg~~l~s~s-------~D~~i~iW 339 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAGHD----NRVSCLGVTDDGMAVATGS-------WDSFLKIW 339 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECCS----SCEEEEEECTTSSCEEEEE-------TTSCEEEE
T ss_pred EECCCCCEEEEECCCCeEEEEEcccC-cEeeEeecCC----CcEEEEEEcCCCCEEEEEc-------CCccEEec
Confidence 66555444333 32 37999998532 2333333332 3466666777777765433 34555555
No 41
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.71 E-value=0.69 Score=55.53 Aligned_cols=138 Identities=10% Similarity=0.126 Sum_probs=91.5
Q ss_pred ceEEEEECCCCCCCcccc---cCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEec
Q psy1644 243 AQVVIIDMNDPTNPIRRP---ISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWI 319 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrp---i~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWi 319 (923)
..|.++|+.+.......+ -..-+...+|..+.+|.-+ ....+++||+++...+......+.|.--.|.
T Consensus 983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~ 1053 (1249)
T 3sfz_A 983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS---------EDSVIQVWNWQTGDYVFLQAHQETVKDFRLL 1053 (1249)
T ss_dssp SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEEC---------SSSBEEEEETTTTEEECCBCCSSCEEEEEEC
T ss_pred CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEc---------CCCEEEEEECCCCceEEEecCCCcEEEEEEc
Confidence 478888887754322211 1122345688888777652 3468999999998888777778889888998
Q ss_pred cCCeEEEEec-CeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeeccccc-cccc
Q psy1644 320 SPNTLALVTE-TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVER-KCSQ 397 (923)
Q Consensus 320 s~~tLglVT~-taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er-~~SQ 397 (923)
.+..+...+. ..|+.|++.... +.+.|.-|. ..|..-..+++++|++..+ -.|.+.+|+.+. ...+
T Consensus 1054 ~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~~~~----~~v~~~~~s~d~~~l~s~s-------~d~~v~iwd~~~~~~~~ 1121 (1249)
T 3sfz_A 1054 QDSRLLSWSFDGTVKVWNVITGR-IERDFTCHQ----GTVLSCAISSDATKFSSTS-------ADKTAKIWSFDLLSPLH 1121 (1249)
T ss_dssp SSSEEEEEESSSEEEEEETTTTC-CCEEEECCS----SCCCCEEECSSSSSCEEEC-------CSSCCCEECSSSSSCSB
T ss_pred CCCcEEEEECCCcEEEEECCCCc-eeEEEcccC----CcEEEEEECCCCCEEEEEc-------CCCcEEEEECCCcceee
Confidence 8887766554 489999986433 333343332 3466667788889876544 357889998763 3334
Q ss_pred cccc
Q psy1644 398 PIEE 401 (923)
Q Consensus 398 ~iEG 401 (923)
.+.|
T Consensus 1122 ~l~~ 1125 (1249)
T 3sfz_A 1122 ELKG 1125 (1249)
T ss_dssp CCCC
T ss_pred eecc
Confidence 4555
No 42
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.67 E-value=0.61 Score=46.45 Aligned_cols=118 Identities=8% Similarity=0.106 Sum_probs=66.8
Q ss_pred cccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccc---cccccCCCceeEEEeccCCeEEEEe---cCeEEEEec
Q psy1644 264 DSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSK---MKAHPMTDDVVFWKWISPNTLALVT---ETSVYHWSM 337 (923)
Q Consensus 264 DSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~K---LKs~~m~E~VvfWkWis~~tLglVT---~taVYHWsi 337 (923)
.+...+|..+.+.+=+. .+..+.+|++++.+. +........+.--.|-.+....+|+ ...|+.|++
T Consensus 179 ~~~~~spdg~~l~v~~~--------~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 179 FNITFTPDGNFAFVANL--------IGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp EEEEECTTSSEEEEEET--------TTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred cceEECCCCCEEEEEeC--------CCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence 45668898875544311 356899999988776 5555554444444555555544444 347889998
Q ss_pred cCCC-CchhhhhcccCCCCCee---EeeeeCCCCCeEEEEeeecccccccceeeeccccccc
Q psy1644 338 EGDS-TPEKMFDRHSTLNGCQI---INYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERKC 395 (923)
Q Consensus 338 ~g~s-~P~K~FdR~~~L~~~QI---InYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~~ 395 (923)
++.. ...+-+.++-.+....+ -....++|++++++.+- -.|.+.+|.++.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~------~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 251 LSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISAN------ISRELKVFTISGKV 306 (331)
T ss_dssp TTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEET------TTTEEEEEETTSCE
T ss_pred CCCceeeecccccccccCCCCcccccceEECCCCCEEEEecC------CCCcEEEEEecCCc
Confidence 6422 11222222211111111 22567888998766542 34678888876543
No 43
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.63 E-value=0.42 Score=54.07 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=59.1
Q ss_pred ceEEEEECCCCCCCcccc---cCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC-CCceeEEEe
Q psy1644 243 AQVVIIDMNDPTNPIRRP---ISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM-TDDVVFWKW 318 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrp---i~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m-~E~VvfWkW 318 (923)
..|.+.|+.+...+.... -..-+...+|..+.+|.=+ ....+.+||+.+.+.+..... .+.+.--.|
T Consensus 208 g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~ 278 (814)
T 3mkq_A 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS---------EDGTLKIWNSSTYKVEKTLNVGLERSWCIAT 278 (814)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE---------TTSCEEEEETTTCSEEEEECCSSSSEEEEEE
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe---------CCCeEEEEECCCCcEEEEeecCCCcEEEEEE
Confidence 367777776544322111 1123556789988887753 346899999999887777665 456767777
Q ss_pred ccCCe---EEEEecCeEEEEeccC
Q psy1644 319 ISPNT---LALVTETSVYHWSMEG 339 (923)
Q Consensus 319 is~~t---LglVT~taVYHWsi~g 339 (923)
-.+.. ++.-++..+..|++..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 279 HPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp CTTCGGGEEEEEETTEEEEEECSC
T ss_pred ccCCCceEEEEEeCCCEEEEEcCC
Confidence 76653 7777888999998854
No 44
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.60 E-value=0.66 Score=46.03 Aligned_cols=106 Identities=11% Similarity=0.136 Sum_probs=67.6
Q ss_pred CCCeEEEEeccc-ccc-c--ccccCCCceeEEEecc--CCeEEEEecC-eEEEEeccCC-----CCchhhhhcccCCC--
Q psy1644 289 APKTLQIFNIEM-KSK-M--KAHPMTDDVVFWKWIS--PNTLALVTET-SVYHWSMEGD-----STPEKMFDRHSTLN-- 354 (923)
Q Consensus 289 ~g~~LQIFNle~-K~K-L--Ks~~m~E~VvfWkWis--~~tLglVT~t-aVYHWsi~g~-----s~P~K~FdR~~~L~-- 354 (923)
....|.+||+++ ... . ........+.--.|-. .+.++..+.. .|..|+++.. ..+...|..|....
T Consensus 168 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (342)
T 1yfq_A 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247 (342)
T ss_dssp STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTC
T ss_pred CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccc
Confidence 356899999987 332 1 2233455677777874 5566665554 7888988655 36777777665432
Q ss_pred ---CCeeEeeeeCCCCCeEEEEeeecccccccceeeeccccc-cccccccc
Q psy1644 355 ---GCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVER-KCSQPIEE 401 (923)
Q Consensus 355 ---~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er-~~SQ~iEG 401 (923)
...|..-..++++++++..+ -.|.+.+|..+. +.-..+.|
T Consensus 248 ~~~~~~i~~~~~s~~~~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~ 291 (342)
T 1yfq_A 248 TNLAYPVNSIEFSPRHKFLYTAG-------SDGIISCWNLQTRKKIKNFAK 291 (342)
T ss_dssp CSSCCCEEEEEECTTTCCEEEEE-------TTSCEEEEETTTTEEEEECCC
T ss_pred cccceeEEEEEEcCCCCEEEEec-------CCceEEEEcCccHhHhhhhhc
Confidence 23677778888888876544 357888888763 22333444
No 45
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.49 E-value=0.57 Score=47.86 Aligned_cols=132 Identities=11% Similarity=0.085 Sum_probs=83.1
Q ss_pred ceEEEEECCCCCCCccc--ccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEecc
Q psy1644 243 AQVVIIDMNDPTNPIRR--PISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWIS 320 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rr--pi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis 320 (923)
..|.++|+......... +-...+...+|..+.+++=+. ....|.+||+++.+.+........+.--.|-.
T Consensus 96 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 167 (391)
T 1l0q_A 96 STLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNN--------GDKTVSVINTVTKAVINTVSVGRSPKGIAVTP 167 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET--------TTTEEEEEETTTTEEEEEEECCSSEEEEEECT
T ss_pred CEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeC--------CCCEEEEEECCCCcEEEEEecCCCcceEEECC
Confidence 46777777654332211 112235567888876644321 34689999999988888877777777777776
Q ss_pred CCeEEEEe---cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecccc
Q psy1644 321 PNTLALVT---ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVE 392 (923)
Q Consensus 321 ~~tLglVT---~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~e 392 (923)
+...-+|+ +..|+.|++... .....+.. ...+.....+++++++++.+-. .-.|.+.+|..+
T Consensus 168 dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~----~~~~~v~~~d~~ 232 (391)
T 1l0q_A 168 DGTKVYVANFDSMSISVIDTVTN-SVIDTVKV-----EAAPSGIAVNPEGTKAYVTNVD----KYFNTVSMIDTG 232 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETTTT-EEEEEEEC-----SSEEEEEEECTTSSEEEEEEEC----SSCCEEEEEETT
T ss_pred CCCEEEEEeCCCCEEEEEECCCC-eEEEEEec-----CCCccceEECCCCCEEEEEecC----cCCCcEEEEECC
Confidence 66544444 346999998643 22222221 2356667788899998777631 135677888764
No 46
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.49 E-value=0.28 Score=55.54 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=70.3
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEeccCC-eEEEEecCeEEEEeccCCCCc
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPN-TLALVTETSVYHWSMEGDSTP 343 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis~~-tLglVT~taVYHWsi~g~s~P 343 (923)
+.-.+|..+.||-=+ ...++.|||+.+.+++.+...+..|.--.|-.+. .|+.-++..|..|+++.....
T Consensus 566 ~v~~spdg~~l~sg~---------~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 566 TVAVSPDGSLCASGG---------KDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIV 636 (694)
T ss_dssp EEEECTTSSEEEEEE---------TTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEE
T ss_pred EEEEeCCCCEEEEEe---------CCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCCh
Confidence 445788888887653 3468999999999999888877777777776544 455556778999999654321
Q ss_pred hhhhhcccC-------------CCC--CeeEeeeeCCCCCeEEEEeeecccccccceeeeccccc
Q psy1644 344 EKMFDRHST-------------LNG--CQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVER 393 (923)
Q Consensus 344 ~K~FdR~~~-------------L~~--~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er 393 (923)
.. +..+.. ... .-+..-.-++++++++..| -+|.+.+|++.|
T Consensus 637 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs-------~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 637 ED-LKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGY-------TDGVIRVWGIGR 693 (694)
T ss_dssp EE-ECCCCC----------------CCCCEEEEEECTTSSEEEEEE-------TTSEEEEEEC--
T ss_pred hh-hccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEc-------CCCeEEEEeccC
Confidence 11 110000 000 0134445577888775433 468889998765
No 47
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.42 E-value=0.91 Score=45.47 Aligned_cols=66 Identities=8% Similarity=0.083 Sum_probs=46.7
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCC-ceeEEEeccCC-eEEEEecCeEEEEeccC
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTD-DVVFWKWISPN-TLALVTETSVYHWSMEG 339 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E-~VvfWkWis~~-tLglVT~taVYHWsi~g 339 (923)
+...+|..+.||.=+ ....+.+||+++.+.++.+.-.. +|.--.|-.+. .|+.-.+..|+.|++..
T Consensus 207 ~~~~~~~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 207 GVCFSANGSRVAWVS---------HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEECSSSSEEEEEE---------TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EEEECCCCCEEEEEe---------CCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 455678777666642 34689999999998888776643 67667777554 44444566899999965
No 48
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=96.41 E-value=0.8 Score=44.77 Aligned_cols=91 Identities=10% Similarity=0.173 Sum_probs=65.1
Q ss_pred CCeEEEEecccccccccccCCCceeEEEeccCCeE-EEEe---cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCC
Q psy1644 290 PKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTL-ALVT---ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDP 365 (923)
Q Consensus 290 g~~LQIFNle~K~KLKs~~m~E~VvfWkWis~~tL-glVT---~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~ 365 (923)
..++.+||.++...........++..-.|...... .+++ +..|+.|++.. ..+.+.|.-|. ..|..-..++
T Consensus 220 ~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~-~~~~~~l~gH~----~~V~~l~~sp 294 (318)
T 4ggc_A 220 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELKGHT----SRVLSLTMSP 294 (318)
T ss_dssp TCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT-CCEEEEECCCS----SCEEEEEECT
T ss_pred CCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC-CcEEEEEcCCC----CCEEEEEEcC
Confidence 46899999999999999888888888888776544 4444 45799999853 34455554442 3577777788
Q ss_pred CCCeEEEEeeecccccccceeeecccc
Q psy1644 366 KQTWLLLIGISAVSNRVVGAMQLYSVE 392 (923)
Q Consensus 366 ~~kW~~LvGI~~~~~~i~G~mQLYS~e 392 (923)
+++.++-.| -+|.+.+|.+.
T Consensus 295 dg~~l~S~s-------~D~~v~iWd~~ 314 (318)
T 4ggc_A 295 DGATVASAA-------ADETLRLWRCF 314 (318)
T ss_dssp TSSCEEEEE-------TTTEEEEECCS
T ss_pred CCCEEEEEe-------cCCeEEEEECC
Confidence 888765433 46788888753
No 49
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.40 E-value=0.14 Score=53.38 Aligned_cols=135 Identities=11% Similarity=0.159 Sum_probs=88.8
Q ss_pred ceEEEEECCCCCCCccc-----ccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccc-cCCC--cee
Q psy1644 243 AQVVIIDMNDPTNPIRR-----PISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAH-PMTD--DVV 314 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rr-----pi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~-~m~E--~Vv 314 (923)
..|.+.|+.+.....+- +-..-+...+|..+.+|.=+ ....|.|||+++.+.+..+ .-.+ .+.
T Consensus 154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 224 (402)
T 2aq5_A 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC---------RDKRVRVIEPRKGTVVAEKDRPHEGTRPV 224 (402)
T ss_dssp SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE---------TTSEEEEEETTTTEEEEEEECSSCSSSCC
T ss_pred CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe---------cCCcEEEEeCCCCceeeeeccCCCCCcce
Confidence 36777777665432221 11123556788877777652 3468999999998877766 3333 256
Q ss_pred EEEeccCCeEEEEe-----cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeec
Q psy1644 315 FWKWISPNTLALVT-----ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389 (923)
Q Consensus 315 fWkWis~~tLglVT-----~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLY 389 (923)
--.|..+..+-.+. +..|+.|++.....|...+... ....|..-..++++++++++|- -.|.+.+|
T Consensus 225 ~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~g~------~dg~i~i~ 295 (402)
T 2aq5_A 225 HAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD---TSSGVLLPFFDPDTNIVYLCGK------GDSSIRYF 295 (402)
T ss_dssp EEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC---CCSSCEEEEEETTTTEEEEEET------TCSCEEEE
T ss_pred EEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc---CCCceeEEEEcCCCCEEEEEEc------CCCeEEEE
Confidence 67787777766664 5689999998766666555321 1234667777889999988872 36788899
Q ss_pred cccccc
Q psy1644 390 SVERKC 395 (923)
Q Consensus 390 S~er~~ 395 (923)
.++.+.
T Consensus 296 d~~~~~ 301 (402)
T 2aq5_A 296 EITSEA 301 (402)
T ss_dssp EECSST
T ss_pred EecCCC
Confidence 887543
No 50
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.39 E-value=0.24 Score=51.45 Aligned_cols=96 Identities=8% Similarity=0.204 Sum_probs=59.1
Q ss_pred CceEEEEECCCCCCCccccc--CccccccCCCccEEEEeccCCCCCCC--------CCCCeEEEEecccccccccccCCC
Q psy1644 242 SAQVVIIDMNDPTNPIRRPI--SADSAIMNPASKVIALKGKAGNDNNP--------NAPKTLQIFNIEMKSKMKAHPMTD 311 (923)
Q Consensus 242 ~~qVvIVDL~n~~~v~Rrpi--~ADSAIMnP~~~IIALra~~~~~n~~--------~~g~~LQIFNle~K~KLKs~~m~E 311 (923)
..+|.++|+.+.....+-+. ...+...+|..+.++.-+... +.. ..-..|.+||+++.+.++.+....
T Consensus 324 ~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~ 401 (433)
T 3bws_A 324 CSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGP--NHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN 401 (433)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCC--CCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS
T ss_pred CCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCC--CccccccccccccceEEEEEECCCCcEEEEecCCC
Confidence 34788888875443222221 223566788888776652110 000 001389999999988888877766
Q ss_pred ceeEEEeccCCeEEEEe---cCeEEEEeccC
Q psy1644 312 DVVFWKWISPNTLALVT---ETSVYHWSMEG 339 (923)
Q Consensus 312 ~VvfWkWis~~tLglVT---~taVYHWsi~g 339 (923)
.+.-..|-.+...-+++ +..|+.|++++
T Consensus 402 ~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 402 QPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 77777776555443443 56899998864
No 51
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.37 E-value=0.34 Score=49.65 Aligned_cols=126 Identities=13% Similarity=0.160 Sum_probs=70.4
Q ss_pred ccccCCCcc-EEEEeccCCCCCCCCCCCeEEEEeccc----ccccccccCCCceeEEEecc--CCeEEEEec-CeEEEEe
Q psy1644 265 SAIMNPASK-VIALKGKAGNDNNPNAPKTLQIFNIEM----KSKMKAHPMTDDVVFWKWIS--PNTLALVTE-TSVYHWS 336 (923)
Q Consensus 265 SAIMnP~~~-IIALra~~~~~n~~~~g~~LQIFNle~----K~KLKs~~m~E~VvfWkWis--~~tLglVT~-taVYHWs 336 (923)
+...+|..+ ++|.=+ ....+.+||+++ ...++.......|.--.|-. .+.|+..+. ..|+.|+
T Consensus 209 ~~~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd 279 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSS---------VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYS 279 (383)
T ss_dssp EEEECSSCTTEEEEEE---------TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred EEEECCCCCCEEEEEe---------CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence 455788877 666542 346899999998 55566566677888888875 455555543 5899999
Q ss_pred ccCCCCchhhhhcccCCC--CCeeEeeeeCCCCCeEEEEeeecc---cccccceeeeccccc-cccccccc
Q psy1644 337 MEGDSTPEKMFDRHSTLN--GCQIINYRTDPKQTWLLLIGISAV---SNRVVGAMQLYSVER-KCSQPIEE 401 (923)
Q Consensus 337 i~g~s~P~K~FdR~~~L~--~~QIInYr~d~~~kW~~LvGI~~~---~~~i~G~mQLYS~er-~~SQ~iEG 401 (923)
+.....+.. +..|.... ....+.-.-+++..+++ ++.++. .+.-.|.+.+|.++. +.-+.++|
T Consensus 280 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~ 348 (383)
T 3ei3_B 280 SYDWSKPDQ-IIIHPHRQFQHLTPIKATWHPMYDLIV-AGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRD 348 (383)
T ss_dssp TTBTTSCSE-EEECCBCCCTTSCCCCCEECSSSSEEE-EECBCCTTTCTTCCCCEEEEETTTCCEEEEECB
T ss_pred CCCCccccc-cccccccccccccceEEeccCCCCceE-EEecCCcccccCCCCeEEEEecCCCceeeeecC
Confidence 965444432 33222111 11111112233333332 232221 123568899999753 33344544
No 52
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.34 E-value=0.93 Score=44.78 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=74.4
Q ss_pred cccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEeccCCeEEEE-ecCeEEEEeccCCCCch
Q psy1644 266 AIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALV-TETSVYHWSMEGDSTPE 344 (923)
Q Consensus 266 AIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis~~tLglV-T~taVYHWsi~g~s~P~ 344 (923)
...+|..+.+|-=+ .-..+.+||+.+...++.+...+.|.-..|-....+... ++..|+.|++++.....
T Consensus 221 ~~~s~~~~~l~s~s---------~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 291 (340)
T 4aow_A 221 VTVSPDGSLCASGG---------KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVD 291 (340)
T ss_dssp EEECTTSSEEEEEE---------TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEE
T ss_pred EEECCCCCEEEEEe---------CCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEE
Confidence 44688888877642 235899999999999999988888888888766555443 45689999997542111
Q ss_pred h----hhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecccccc
Q psy1644 345 K----MFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERK 394 (923)
Q Consensus 345 K----~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~ 394 (923)
+ .......-....|..-..++++++++-.| -+|.+.+|.++.+
T Consensus 292 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-------~Dg~v~iW~~~tG 338 (340)
T 4aow_A 292 ELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY-------TDNLVRVWQVTIG 338 (340)
T ss_dssp EECCC-------CCCCCEEEEEECTTSSEEEEEE-------TTSCEEEEEEEC-
T ss_pred eccccceeeeccCCCCCEEEEEECCCCCEEEEEe-------CCCEEEEEeCCCc
Confidence 1 00011111134577777788888876443 3578888887653
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.30 E-value=0.5 Score=49.82 Aligned_cols=138 Identities=9% Similarity=0.111 Sum_probs=80.4
Q ss_pred CceEEEEECCCCCCCcccc-cCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC----CCceeEE
Q psy1644 242 SAQVVIIDMNDPTNPIRRP-ISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM----TDDVVFW 316 (923)
Q Consensus 242 ~~qVvIVDL~n~~~v~Rrp-i~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m----~E~VvfW 316 (923)
...|.+.|+.+...+.... -.....-+.|..+.++.=+ ....+.+||+++.+.++.+.. ...|.--
T Consensus 298 d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 368 (445)
T 2ovr_B 298 DTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGN---------ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 368 (445)
T ss_dssp TSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEE---------TTSCEEEEETTTCCEEEEECSTTSCSSCEEEE
T ss_pred CCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEe---------CCCeEEEEECCCCcEEEEEccCCCCCCCEEEE
Confidence 3478888887765332211 1111122344445555432 346899999999888877663 4456555
Q ss_pred EeccCCeEEEEec-CeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecccc
Q psy1644 317 KWISPNTLALVTE-TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVE 392 (923)
Q Consensus 317 kWis~~tLglVT~-taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~e 392 (923)
.| +++.|+..+. ..|..|++........+......-.+..|.....++++.+++..+ .+|.....+-+|+.+
T Consensus 369 ~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~---~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 369 QF-NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS---RNGTEETKLLVLDFD 441 (445)
T ss_dssp EE-CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC---SSSSSCCEEEEEECC
T ss_pred EE-CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcc---cCCCCccEEEEEECC
Confidence 55 7888777774 479999996543222222212222346788888888877665443 333334456666654
No 54
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=96.26 E-value=0.12 Score=58.11 Aligned_cols=256 Identities=16% Similarity=0.219 Sum_probs=134.5
Q ss_pred ceeEEeccccceEEEEeeeeeEEEEec--ccceeeeecccCCCcEEEeeccCCCcceEEEecCCcceeeeeeeceeeccc
Q psy1644 65 PVAMQVSAKYDVVYLITKFGYIHVYDI--ETATCIYMNRISSDTIFVTAPHEATGGIIGLTNVGINVGSVSFNTLTMESD 142 (923)
Q Consensus 65 PvamqiS~k~G~iyliTK~G~lhl~Dl--et~t~iy~~rIS~~~if~ta~~~~t~Gil~vn~~G~~~~si~~~t~tm~sd 142 (923)
|-++.+|..-..+|+....|.|.+||+ +|++++..=+. |-.|.++.|+--+=...
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-----------------------g~~p~~va~sp~~~~dg 237 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-----------------------GIEARSVESSKFKGYED 237 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-----------------------CSEEEEEEECCSTTCTT
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-----------------------CCCcceEEeCCCcCCCC
Confidence 667888888899999999999999999 88876542211 12344444431000023
Q ss_pred ceeEEEecccccceEEEEecCCCCCCCccCcc-----ccccccCcccchhhhcCCCCCCCCCCcccceeeeccccccccC
Q psy1644 143 KFICVREKIAESAQVVIIDMNDPTNPIRRPIS-----ADSAIMNPASKVIALKGKAGNDNNPNGEFKNRIYLLTNVGINV 217 (923)
Q Consensus 143 k~ic~~~~~~~~~~vviid~~~~~~~~r~~~~-----a~~~im~p~~~i~al~~~~~~~~~~~~~~~~e~~~Lt~lGI~~ 217 (923)
|++.+-.. ...+|+++|...- .++++ ++ .|..-.||..++-++.- +|
T Consensus 238 ~~l~v~~~--~~~~v~v~D~~t~-~~~~~-i~~~g~~~~~~~~~~~~~v~~i~~------------------------s~ 289 (543)
T 1nir_A 238 RYTIAGAY--WPPQFAIMDGETL-EPKQI-VSTRGMTVDTQTYHPEPRVAAIIA------------------------SH 289 (543)
T ss_dssp TEEEEEEE--ESSEEEEEETTTC-CEEEE-EECCEECSSSCCEESCCCEEEEEE------------------------CS
T ss_pred CEEEEEEc--cCCeEEEEecccc-cccee-ecccCcccCccccccCCceEEEEE------------------------CC
Confidence 44433221 1356888886532 22210 11 01111112211111110 00
Q ss_pred Ccccccceeeecce-EEEEEeccCCCceEEEEECCCCCCCcccccCc----cccccCCCccEEEEeccCCCCCCCCCCCe
Q psy1644 218 GSVSFNTLTMESDK-FICVREKIAESAQVVIIDMNDPTNPIRRPISA----DSAIMNPASKVIALKGKAGNDNNPNAPKT 292 (923)
Q Consensus 218 ~si~F~~lTmESDk-yICVRE~~~~~~qVvIVDL~n~~~v~Rrpi~A----DSAIMnP~~~IIALra~~~~~n~~~~g~~ 292 (923)
.+.. |++.+ +..+|.+||+.+........+.+ .+...+|..+.+..=+. ...+
T Consensus 290 ----------~~~~~~vs~~----~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~--------~~~~ 347 (543)
T 1nir_A 290 ----------EHPEFIVNVK----ETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAAN--------NSNK 347 (543)
T ss_dssp ----------SSSEEEEEET----TTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEG--------GGTE
T ss_pred ----------CCCEEEEEEC----CCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEec--------CCCe
Confidence 0112 33433 34589999998865543222222 23457888774332210 3468
Q ss_pred EEEEecccccccccccC---CCceeEEEeccCC-eEEEEec----CeEEEEeccCCCCchhhhhcccCCC--CCeeEeee
Q psy1644 293 LQIFNIEMKSKMKAHPM---TDDVVFWKWISPN-TLALVTE----TSVYHWSMEGDSTPEKMFDRHSTLN--GCQIINYR 362 (923)
Q Consensus 293 LQIFNle~K~KLKs~~m---~E~VvfWkWis~~-tLglVT~----taVYHWsi~g~s~P~K~FdR~~~L~--~~QIInYr 362 (923)
+.+||+++.+.++.... +.+-.-+.|.+++ .-.+||. ..|-.|+++....|...+..-..|. +.....-.
T Consensus 348 v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~ 427 (543)
T 1nir_A 348 VAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK 427 (543)
T ss_dssp EEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE
T ss_pred EEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEE
Confidence 99999998876665442 2221123455554 4456663 5899999865333322222222232 22344455
Q ss_pred eCCCCCeEEEEeeecccccccceeeeccccc
Q psy1644 363 TDPKQTWLLLIGISAVSNRVVGAMQLYSVER 393 (923)
Q Consensus 363 ~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er 393 (923)
.+++.+|+.+-.-..++....+.+++|.++.
T Consensus 428 ~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~ 458 (543)
T 1nir_A 428 THPKSSHLYVDTTFNPDARISQSVAVFDLKN 458 (543)
T ss_dssp CCTTCCEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred cCCCCCcEEEecCCCCCcccCceEEEEECCC
Confidence 7888999765432222334678999999874
No 55
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.25 E-value=0.54 Score=46.62 Aligned_cols=143 Identities=12% Similarity=0.133 Sum_probs=77.1
Q ss_pred ceEEEEECCCCCCCcccccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccccccc---ccCCCceeEEEec
Q psy1644 243 AQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKA---HPMTDDVVFWKWI 319 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrpi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs---~~m~E~VvfWkWi 319 (923)
..|.+.|+.......+.........+.+....+++-+ ....+.+|+++...+... ......+..+.+.
T Consensus 151 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (368)
T 3mmy_A 151 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVAT---------AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIF 221 (368)
T ss_dssp SEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEE---------GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEE
T ss_pred CcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEe---------CCCcEEEEEeccccchhhhccccccCCCceEEEc
Confidence 4677788776655544444434344444444444431 356899999987543221 1112223333322
Q ss_pred -----cCCeEEEEe-cCeEEEEeccCCC--CchhhhhcccCCCC--------CeeEeeeeCCCCCeEEEEeeeccccccc
Q psy1644 320 -----SPNTLALVT-ETSVYHWSMEGDS--TPEKMFDRHSTLNG--------CQIINYRTDPKQTWLLLIGISAVSNRVV 383 (923)
Q Consensus 320 -----s~~tLglVT-~taVYHWsi~g~s--~P~K~FdR~~~L~~--------~QIInYr~d~~~kW~~LvGI~~~~~~i~ 383 (923)
+++.++.-+ +..|..|++.... .+...|.-|..... ..|..-..++++++++..| -.
T Consensus 222 ~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-------~d 294 (368)
T 3mmy_A 222 KDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG-------SD 294 (368)
T ss_dssp ECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE-------TT
T ss_pred ccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc-------cC
Confidence 222233333 3478999996543 33334443332211 1477778888988876655 45
Q ss_pred ceeeeccccc-cccccccc
Q psy1644 384 GAMQLYSVER-KCSQPIEE 401 (923)
Q Consensus 384 G~mQLYS~er-~~SQ~iEG 401 (923)
|.+.+|..+. ..-+.+++
T Consensus 295 g~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 295 GRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp SCEEEEETTTTEEEEECCC
T ss_pred CeEEEEECCCCcEEEEecC
Confidence 7889998874 33344444
No 56
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=96.22 E-value=0.76 Score=45.64 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=21.9
Q ss_pred ccceEEEEeeeeeEEEEecccceeee
Q psy1644 73 KYDVVYLITKFGYIHVYDIETATCIY 98 (923)
Q Consensus 73 k~G~iyliTK~G~lhl~Dlet~t~iy 98 (923)
..+.++..+..|.|+|||+.++.++.
T Consensus 33 ~~~~~~~~~~~~~v~vw~~~~~~~~~ 58 (366)
T 3k26_A 33 GDPLVFATVGSNRVTLYECHSQGEIR 58 (366)
T ss_dssp TSCEEEEEEETTEEEEEEECGGGCEE
T ss_pred CCceEEEECCCCEEEEEEcCCCcEEE
Confidence 46778888999999999999987753
No 57
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.19 E-value=1.2 Score=44.41 Aligned_cols=142 Identities=13% Similarity=0.181 Sum_probs=78.8
Q ss_pred ceEEEEECCCCCCCccccc---CccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC--CCceeEEE
Q psy1644 243 AQVVIIDMNDPTNPIRRPI---SADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM--TDDVVFWK 317 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrpi---~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m--~E~VvfWk 317 (923)
..|.+.|+.+......-+- ..-+...+|..+.+|.=+ ....+.+||+++.+.++.... ..++..-.
T Consensus 129 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 199 (312)
T 4ery_A 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS---------YDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 199 (312)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE---------TTSCEEEEETTTCCEEEEECCSSCCCEEEEE
T ss_pred CcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCceeeEEeccCCCceEEEE
Confidence 3677777765543222111 112345678877777652 346899999999888776543 33566666
Q ss_pred eccCCe-EEEEe-cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeeccccc-c
Q psy1644 318 WISPNT-LALVT-ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVER-K 394 (923)
Q Consensus 318 Wis~~t-LglVT-~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er-~ 394 (923)
|-.+.. |+..+ +..|..|++... .+.+.|..|..-..+-... -...+++|++.. .-.|.+.+|+.+. .
T Consensus 200 ~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~sg-------~~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 200 FSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFAN-FSVTGGKWIVSG-------SEDNLVYIWNLQTKE 270 (312)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTT-EEEEEECSSCCSSSCCCEE-EECSSSCEEEEC-------CTTSCEEEEETTTCC
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEEecCCceEEEEEE-EEeCCCcEEEEE-------CCCCEEEEEECCCch
Confidence 655443 33333 357999998543 3344444443222111111 123455665432 2468899998864 3
Q ss_pred cccccccc
Q psy1644 395 CSQPIEEK 402 (923)
Q Consensus 395 ~SQ~iEGk 402 (923)
.-+.++|+
T Consensus 271 ~~~~~~~h 278 (312)
T 4ery_A 271 IVQKLQGH 278 (312)
T ss_dssp EEEEECCC
T ss_pred hhhhhhcc
Confidence 44556663
No 58
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.53 Score=54.58 Aligned_cols=97 Identities=14% Similarity=0.112 Sum_probs=58.0
Q ss_pred CCeEEEEeccccccc----ccccC-CCceeEEEeccC----CeEEEEe-cCeEEEEeccCCCCchhhhhcccCCCCCeeE
Q psy1644 290 PKTLQIFNIEMKSKM----KAHPM-TDDVVFWKWISP----NTLALVT-ETSVYHWSMEGDSTPEKMFDRHSTLNGCQII 359 (923)
Q Consensus 290 g~~LQIFNle~K~KL----Ks~~m-~E~VvfWkWis~----~tLglVT-~taVYHWsi~g~s~P~K~FdR~~~L~~~QII 359 (923)
..++++||+.+.... ....- ..+|.--.|-.+ +.|+-.+ +..|+.|++.....+....-....-....|.
T Consensus 179 dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~ 258 (753)
T 3jro_A 179 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLW 258 (753)
T ss_dssp TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCC
T ss_pred CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceE
Confidence 467999999876422 22221 456777788765 3444444 3479999997644332211111111234566
Q ss_pred eeeeCCCCCeEEEEeeecccccccceeeeccccc
Q psy1644 360 NYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVER 393 (923)
Q Consensus 360 nYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er 393 (923)
.-..++++++++..| -.|.+.+|..+.
T Consensus 259 ~l~~spdg~~l~s~s-------~Dg~I~vwd~~~ 285 (753)
T 3jro_A 259 RASWSLSGNVLALSG-------GDNKVTLWKENL 285 (753)
T ss_dssp CEEECTTTCCEEEEC-------SSSCEECCBCCS
T ss_pred EEEEcCCCCEEEEEc-------CCCEEEEEecCC
Confidence 667788888876554 368889998763
No 59
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.12 E-value=0.65 Score=48.68 Aligned_cols=90 Identities=14% Similarity=0.255 Sum_probs=51.0
Q ss_pred ceEEEEECCCCCCCccccc--C-ccccccCCCc-cEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEe
Q psy1644 243 AQVVIIDMNDPTNPIRRPI--S-ADSAIMNPAS-KVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKW 318 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrpi--~-ADSAIMnP~~-~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkW 318 (923)
..|-+.|+.+...+..-.- . --+...+|.. ++||-=+ .-.++.|||+++++-++...-...|.=-.|
T Consensus 237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs---------~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~ 307 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS---------EDCSLAVLDSSLSELFRSQAHRDFVRDATW 307 (344)
T ss_dssp SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE---------TTSCEEEECTTCCEEEEECCCSSCEEEEEE
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe---------CCCeEEEEECCCCcEEEEcCCCCCEEEEEE
Confidence 4677788876544322111 1 1134467764 4555421 246899999998876554444566777777
Q ss_pred ccC--CeEEEEe-cCeEEEEeccCCC
Q psy1644 319 ISP--NTLALVT-ETSVYHWSMEGDS 341 (923)
Q Consensus 319 is~--~tLglVT-~taVYHWsi~g~s 341 (923)
=.+ ..|+=.. +..|.+|++..+.
T Consensus 308 sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 308 SPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CSSSTTEEEEEETTSCEEEEECCC--
T ss_pred eCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 422 2333333 5799999996543
No 60
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.06 E-value=1.4 Score=44.30 Aligned_cols=116 Identities=9% Similarity=0.187 Sum_probs=66.7
Q ss_pred ccccCCC-ccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC--CCceeEEEecc---CCeEEEEe-cCeEEEEec
Q psy1644 265 SAIMNPA-SKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM--TDDVVFWKWIS---PNTLALVT-ETSVYHWSM 337 (923)
Q Consensus 265 SAIMnP~-~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m--~E~VvfWkWis---~~tLglVT-~taVYHWsi 337 (923)
+...+|. ...+|-=+ ..+++.+||+.+......... ...+.+..|.. ...|+-.+ +..|..|++
T Consensus 145 ~v~~~p~~~~~l~sgs---------~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~ 215 (304)
T 2ynn_A 145 CVAFNPKDPSTFASGC---------LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215 (304)
T ss_dssp EEEECTTCTTEEEEEE---------TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEET
T ss_pred EEEECCCCCCEEEEEe---------CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeC
Confidence 3446774 45565532 346899999987665444332 24577777763 23454444 348999998
Q ss_pred cCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeeccccc-cccccccc
Q psy1644 338 EGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVER-KCSQPIEE 401 (923)
Q Consensus 338 ~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er-~~SQ~iEG 401 (923)
... .+...+.-|. ..|..-..+++.++++-.| -+|.+.+|..+. +.-+.+.+
T Consensus 216 ~~~-~~~~~~~~h~----~~v~~~~~~p~~~~l~s~s-------~Dg~i~iWd~~~~~~~~~~~~ 268 (304)
T 2ynn_A 216 QTK-SCVATLEGHM----SNVSFAVFHPTLPIIISGS-------EDGTLKIWNSSTYKVEKTLNV 268 (304)
T ss_dssp TTT-EEEEEEECCS----SCEEEEEECSSSSEEEEEE-------TTSCEEEEETTTCCEEEEECC
T ss_pred CCC-ccceeeCCCC----CCEEEEEECCCCCEEEEEc-------CCCeEEEEECCCCceeeeccC
Confidence 643 2333343332 2344455567777654332 468899998764 33444444
No 61
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=95.99 E-value=1.2 Score=46.15 Aligned_cols=94 Identities=16% Similarity=0.336 Sum_probs=62.7
Q ss_pred ceEEEEEeccCCCceEEEEECCCCCCCcccccCcc---c----------------cccCCCccEEEEeccCCCCCCCCCC
Q psy1644 230 DKFICVREKIAESAQVVIIDMNDPTNPIRRPISAD---S----------------AIMNPASKVIALKGKAGNDNNPNAP 290 (923)
Q Consensus 230 DkyICVRE~~~~~~qVvIVDL~n~~~v~Rrpi~AD---S----------------AIMnP~~~IIALra~~~~~n~~~~g 290 (923)
.+++.... + ..|.+.|+.....+.+.--.-+ + .-.+|..+.||.=+ ..
T Consensus 297 g~~l~~~~---~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s---------~d 363 (447)
T 3dw8_B 297 GRYMMTRD---Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS---------YN 363 (447)
T ss_dssp SSEEEEEE---S-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC---------ST
T ss_pred CCEEEEee---C-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEec---------cC
Confidence 45666443 3 6899999987443333211111 1 56789988886642 34
Q ss_pred CeEEEEecccccccc---------------------------------cccCCCceeEEEecc-CCeEEEEecCeEEEEe
Q psy1644 291 KTLQIFNIEMKSKMK---------------------------------AHPMTDDVVFWKWIS-PNTLALVTETSVYHWS 336 (923)
Q Consensus 291 ~~LQIFNle~K~KLK---------------------------------s~~m~E~VvfWkWis-~~tLglVT~taVYHWs 336 (923)
..|.|||+++++.+. +..++..|.-..|=. .+.||..+...+|.|+
T Consensus 364 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~ 443 (447)
T 3dw8_B 364 NFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQ 443 (447)
T ss_dssp TEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEE
T ss_pred CEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceeeeec
Confidence 689999999876543 334566777788864 4688999999999996
No 62
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=95.98 E-value=0.62 Score=45.83 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=39.9
Q ss_pred ceEEEEECCCCCCCcccc--cCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCC
Q psy1644 243 AQVVIIDMNDPTNPIRRP--ISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMT 310 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrp--i~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~ 310 (923)
..|.++|+.+.....+-+ -...+...+|..+.+++-+ ....|.+||+++.+.++.+...
T Consensus 260 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---------~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 260 NVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG---------ALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEES---------BSSEEEEEETTTCCEEEEEECG
T ss_pred CeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEc---------CCCcEEEEECcCCcEEEEEEcC
Confidence 589999988754333322 2345677889888766642 3468999999988777666553
No 63
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=95.97 E-value=1.8 Score=44.69 Aligned_cols=151 Identities=13% Similarity=0.120 Sum_probs=82.8
Q ss_pred CceEEEEECCCCCCCccccc--CccccccCCCccEEEEe-ccCCCCCCCCCCCeEEEEecccccccccccCCC--ceeEE
Q psy1644 242 SAQVVIIDMNDPTNPIRRPI--SADSAIMNPASKVIALK-GKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTD--DVVFW 316 (923)
Q Consensus 242 ~~qVvIVDL~n~~~v~Rrpi--~ADSAIMnP~~~IIALr-a~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E--~VvfW 316 (923)
.+.|.++|+.......+-+. ......++|..++.+.= +......-......|.+||.++.+-.+...++. ...--
T Consensus 151 ~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 151 QNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 45899999887543333222 23456678877755543 110000000002589999998877666665532 23333
Q ss_pred EeccCCeEEEEecCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecccccccc
Q psy1644 317 KWISPNTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERKCS 396 (923)
Q Consensus 317 kWis~~tLglVT~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~~S 396 (923)
.|-.+.....|+...||.|+..+......-|-. ..+...-+-..|++.+++.+..- .+-.-.|.++.|+.+.+.-
T Consensus 231 a~~~d~~~lyv~~~~v~~~d~~t~~~~~~~~~~---~~~~~p~gi~vdp~~g~lyva~~--~~y~~~~~V~v~d~~g~~~ 305 (328)
T 3dsm_A 231 QLNGTRDTLYWINNDIWRMPVEADRVPVRPFLE---FRDTKYYGLTVNPNNGEVYVADA--IDYQQQGIVYRYSPQGKLI 305 (328)
T ss_dssp EECTTSCEEEEESSSEEEEETTCSSCCSSCSBC---CCSSCEEEEEECTTTCCEEEEEC--TTSSSEEEEEEECTTCCEE
T ss_pred EEecCCCEEEEEccEEEEEECCCCceeeeeeec---CCCCceEEEEEcCCCCeEEEEcc--cccccCCEEEEECCCCCEE
Confidence 444346677777779999998643321111111 11344566677877777666541 1113467888898764433
Q ss_pred c
Q psy1644 397 Q 397 (923)
Q Consensus 397 Q 397 (923)
+
T Consensus 306 ~ 306 (328)
T 3dsm_A 306 D 306 (328)
T ss_dssp E
T ss_pred E
Confidence 3
No 64
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=95.96 E-value=0.65 Score=47.64 Aligned_cols=127 Identities=13% Similarity=0.192 Sum_probs=74.6
Q ss_pred eEEEEECCCCCCCcc---cccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC-CCceeEEEec
Q psy1644 244 QVVIIDMNDPTNPIR---RPISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM-TDDVVFWKWI 319 (923)
Q Consensus 244 qVvIVDL~n~~~v~R---rpi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m-~E~VvfWkWi 319 (923)
.|.+.|+.+...+.. .....-+...+|..+.||-=+ ...++.|||+++...++.+.- ...|.--.|-
T Consensus 187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 257 (321)
T 3ow8_A 187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS---------DDGYIKIYDVQHANLAGTLSGHASWVLNVAFC 257 (321)
T ss_dssp CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC---------TTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc---------CCCeEEEEECCCcceeEEEcCCCCceEEEEEC
Confidence 566666654432111 011123556789888887652 346899999998776665443 3456666676
Q ss_pred cCC-eEEEEe-cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeeccc
Q psy1644 320 SPN-TLALVT-ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSV 391 (923)
Q Consensus 320 s~~-tLglVT-~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~ 391 (923)
.+. .|+-.+ +..|..|++... .+...|..|. ..|..-.-+++++.++-.| -+|.+.+|..
T Consensus 258 p~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~h~----~~v~~v~~s~~g~~l~s~~-------~d~~i~vwd~ 319 (321)
T 3ow8_A 258 PDDTHFVSSSSDKSVKVWDVGTR-TCVHTFFDHQ----DQVWGVKYNGNGSKIVSVG-------DDQEIHIYDC 319 (321)
T ss_dssp TTSSEEEEEETTSCEEEEETTTT-EEEEEECCCS----SCEEEEEECTTSSEEEEEE-------TTCCEEEEEC
T ss_pred CCCCEEEEEeCCCcEEEEeCCCC-EEEEEEcCCC----CcEEEEEECCCCCEEEEEe-------CCCeEEEEeC
Confidence 444 343333 347999998643 2333343332 3566677778888765544 3567777753
No 65
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=95.92 E-value=0.41 Score=49.88 Aligned_cols=90 Identities=12% Similarity=0.249 Sum_probs=53.4
Q ss_pred ceEEEEECCCCCCCcccccCcc---ccccCCCc-cEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEe
Q psy1644 243 AQVVIIDMNDPTNPIRRPISAD---SAIMNPAS-KVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKW 318 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrpi~AD---SAIMnP~~-~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkW 318 (923)
..|.++|+.++..........+ +.-.+|.. ++||-=+ .-.++.|||+++.+.++.......|.==.|
T Consensus 249 ~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs---------~D~~i~iwd~~~~~~~~~~~H~~~V~~vaf 319 (357)
T 4g56_B 249 GNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS---------EDCTVAVLDADFSEVFRDLSHRDFVTGVAW 319 (357)
T ss_dssp SCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE---------TTSCEEEECTTSCEEEEECCCSSCEEEEEE
T ss_pred cceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe---------CCCEEEEEECCCCcEeEECCCCCCEEEEEE
Confidence 4688888877643322111111 22345553 4555321 235899999999887766555667777778
Q ss_pred c--cCCeEEEEe-cCeEEEEeccCCC
Q psy1644 319 I--SPNTLALVT-ETSVYHWSMEGDS 341 (923)
Q Consensus 319 i--s~~tLglVT-~taVYHWsi~g~s 341 (923)
= +...|+-.. +..|+.|++....
T Consensus 320 sP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 320 SPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CSSSTTEEEEEETTSCEEEEECC---
T ss_pred eCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 3 456666555 3589999996443
No 66
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.90 E-value=0.95 Score=48.47 Aligned_cols=137 Identities=11% Similarity=0.222 Sum_probs=79.4
Q ss_pred CceEEEEECCCCCCCc--ccccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEec
Q psy1644 242 SAQVVIIDMNDPTNPI--RRPISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWI 319 (923)
Q Consensus 242 ~~qVvIVDL~n~~~v~--Rrpi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWi 319 (923)
...|.++|+....... ..+-..-+...+|..+.||+-+... ....|.+||+++++...-......+.--.|-
T Consensus 202 ~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~------g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 202 RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT------GSLNLYVMDLASGQIRQVTDGRSNNTEPTWF 275 (415)
T ss_dssp SCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTT------SSCEEEEEETTTCCEEECCCCSSCEEEEEEC
T ss_pred CcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecC------CCceEEEEECCCCCEEeCcCCCCcccceEEC
Confidence 4578888887653211 1111223566789988888543211 1346999999876532222223455566776
Q ss_pred cC-CeEEEEecC----eEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecccccc
Q psy1644 320 SP-NTLALVTET----SVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERK 394 (923)
Q Consensus 320 s~-~tLglVT~t----aVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~ 394 (923)
.+ +.|+..+.. .+|.|++.+.. +..+. ..+..+..-..+++++|++..+-.. + .+.+.+|..+.+
T Consensus 276 pdg~~l~~~s~~~g~~~i~~~d~~~~~-~~~l~-----~~~~~~~~~~~spdG~~l~~~~~~~--g--~~~i~~~d~~~~ 345 (415)
T 2hqs_A 276 PDSQNLAFTSDQAGRPQVYKVNINGGA-PQRIT-----WEGSQNQDADVSSDGKFMVMVSSNG--G--QQHIAKQDLATG 345 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTSSC-CEECC-----CSSSEEEEEEECTTSSEEEEEEECS--S--CEEEEEEETTTC
T ss_pred CCCCEEEEEECCCCCcEEEEEECCCCC-EEEEe-----cCCCcccCeEECCCCCEEEEEECcC--C--ceEEEEEECCCC
Confidence 44 457777764 79999986543 22221 1234677778899999988766321 1 335555665543
No 67
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=95.89 E-value=0.32 Score=47.93 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=52.4
Q ss_pred eEEEEecccccccccccC---CCceeEEEeccCCeEEEEecCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCC
Q psy1644 292 TLQIFNIEMKSKMKAHPM---TDDVVFWKWISPNTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQT 368 (923)
Q Consensus 292 ~LQIFNle~K~KLKs~~m---~E~VvfWkWis~~tLglVT~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~k 368 (923)
.|.+||+++.+.. ...+ ...+.--.|-.+....+|+...|+.|++.+. .+.+.+.- +..+.+-..+++++
T Consensus 220 ~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~v~~~d~~~~-~~~~~~~~-----~~~~~~~~~s~dg~ 292 (337)
T 1pby_B 220 GLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN-ASIKRVPL-----PHSYYSVNVSTDGS 292 (337)
T ss_dssp EEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTT-EEEEEEEC-----SSCCCEEEECTTSC
T ss_pred ceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEeCCeEEEEECCCC-cCcceecC-----CCceeeEEECCCCC
Confidence 5788998876543 2222 1223334565666666777899999998542 22222221 12345556788999
Q ss_pred eEEEEeeecccccccceeeeccccc
Q psy1644 369 WLLLIGISAVSNRVVGAMQLYSVER 393 (923)
Q Consensus 369 W~~LvGI~~~~~~i~G~mQLYS~er 393 (923)
++++.+ -.|.+.+|..+.
T Consensus 293 ~l~~~~-------~~~~i~v~d~~~ 310 (337)
T 1pby_B 293 TVWLGG-------ALGDLAAYDAET 310 (337)
T ss_dssp EEEEES-------BSSEEEEEETTT
T ss_pred EEEEEc-------CCCcEEEEECcC
Confidence 877642 147788887653
No 68
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=95.88 E-value=1.1 Score=44.52 Aligned_cols=79 Identities=10% Similarity=0.132 Sum_probs=47.3
Q ss_pred CCceEEEEECCCCCCCcccccCc-cccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEec
Q psy1644 241 ESAQVVIIDMNDPTNPIRRPISA-DSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWI 319 (923)
Q Consensus 241 ~~~qVvIVDL~n~~~v~Rrpi~A-DSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWi 319 (923)
+.+.|.++|+.+.....+-+... .+...+|..+.+.+-.. .+..|.+||+++.+.++.....+...--.|-
T Consensus 251 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~--------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s 322 (353)
T 3vgz_A 251 KAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHR--------QAGKVSVIDAKSYKVVKTFDTPTHPNSLALS 322 (353)
T ss_dssp SSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEET--------TTTEEEEEETTTTEEEEEEECCSEEEEEEEC
T ss_pred CCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEEC--------CCCeEEEEECCCCeEEEEEecCCCCCeEEEc
Confidence 34688999987765444433332 24556888774444310 3568999999998888777666544333444
Q ss_pred cCCeEEEE
Q psy1644 320 SPNTLALV 327 (923)
Q Consensus 320 s~~tLglV 327 (923)
.+....+|
T Consensus 323 ~dg~~l~v 330 (353)
T 3vgz_A 323 ADGKTLYV 330 (353)
T ss_dssp TTSCEEEE
T ss_pred CCCCEEEE
Confidence 34433333
No 69
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.69 E-value=0.41 Score=57.41 Aligned_cols=128 Identities=9% Similarity=0.102 Sum_probs=81.2
Q ss_pred ceEEEEECCCCCCCccc--ccC-ccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccc----------cC
Q psy1644 243 AQVVIIDMNDPTNPIRR--PIS-ADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAH----------PM 309 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rr--pi~-ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~----------~m 309 (923)
..|.+.|+.+......- +-. --+...+|..+.+|.=+ ....+.+||+++.+.+... ..
T Consensus 1107 ~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1177 (1249)
T 3sfz_A 1107 KTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGD---------DNGEIRIWNVSDGQLLHSCAPISVEEGTATH 1177 (1249)
T ss_dssp SCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEE---------TTSCCCEEESSSSCCCCCCCCCC-------C
T ss_pred CcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEe---------CCCEEEEEECCCCceEEEecccccccccccc
Confidence 35666676654422111 111 12345788888888753 2357999999998887764 23
Q ss_pred CCceeEEEeccCCeEEEEecCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeec
Q psy1644 310 TDDVVFWKWISPNTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389 (923)
Q Consensus 310 ~E~VvfWkWis~~tLglVT~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLY 389 (923)
...|.--.|-.+...-+++...|..|++.... +...|..| +..|..-..++++++++..+ -.|.+.+|
T Consensus 1178 ~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~g~-~~~~~~~~----~~~i~~~~~s~dg~~l~~~~-------~dg~v~vw 1245 (1249)
T 3sfz_A 1178 GGWVTDVCFSPDSKTLVSAGGYLKWWNVATGD-SSQTFYTN----GTNLKKIHVSPDFRTYVTVD-------NLGILYIL 1245 (1249)
T ss_dssp CSCCCEEEECTTSSCEEEESSSEEEBCSSSCB-CCCCCCCS----SCCCCCCEECSSSCCEEEEC-------TTCCEEEE
T ss_pred CceEEEEEECCCCCEEEECCCeEEEEECCCCc-eeeeeecc----CCcccEEEECCCCCEEEEec-------CCcEEEEE
Confidence 45677778877776667777999999986432 23334333 34566677888888876644 35677777
Q ss_pred cc
Q psy1644 390 SV 391 (923)
Q Consensus 390 S~ 391 (923)
.+
T Consensus 1246 ~l 1247 (1249)
T 3sfz_A 1246 QV 1247 (1249)
T ss_dssp CC
T ss_pred ee
Confidence 64
No 70
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.57 E-value=2.3 Score=42.92 Aligned_cols=93 Identities=12% Similarity=0.145 Sum_probs=54.0
Q ss_pred ceEEEEECCCCCCCccccc---CccccccCCCcc-EEEEeccCCCCCCCCCCCeEEEEecccccc-ccc-----------
Q psy1644 243 AQVVIIDMNDPTNPIRRPI---SADSAIMNPASK-VIALKGKAGNDNNPNAPKTLQIFNIEMKSK-MKA----------- 306 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrpi---~ADSAIMnP~~~-IIALra~~~~~n~~~~g~~LQIFNle~K~K-LKs----------- 306 (923)
..|.+.|+.....+....- ..-+...+|..+ ++|.=+ ....+.+||+.+... +..
T Consensus 166 ~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 236 (408)
T 4a11_B 166 PKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATAS---------ADSRVKLWDVRRASGCLITLDQHNGKKSQA 236 (408)
T ss_dssp SSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEE---------TTSCEEEEETTCSSCCSEECCTTTTCSCCC
T ss_pred CeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEc---------CCCcEEEEECCCCCccccccccccccccee
Confidence 4788888876654332221 112455678766 555532 346899999976541 111
Q ss_pred -----ccCCCceeEEEeccCC-eEEEEe-cCeEEEEeccCCCCch
Q psy1644 307 -----HPMTDDVVFWKWISPN-TLALVT-ETSVYHWSMEGDSTPE 344 (923)
Q Consensus 307 -----~~m~E~VvfWkWis~~-tLglVT-~taVYHWsi~g~s~P~ 344 (923)
......|.--.|-.+. .|+..+ +..|+.|++.....+.
T Consensus 237 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 281 (408)
T 4a11_B 237 VESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTL 281 (408)
T ss_dssp TTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCC
T ss_pred eccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccce
Confidence 1224456667777554 455554 3479999997554433
No 71
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.44 E-value=1.3 Score=46.19 Aligned_cols=135 Identities=10% Similarity=0.071 Sum_probs=76.6
Q ss_pred CceEEEEECCCCCCCccccc----CccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCC------
Q psy1644 242 SAQVVIIDMNDPTNPIRRPI----SADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTD------ 311 (923)
Q Consensus 242 ~~qVvIVDL~n~~~v~Rrpi----~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E------ 311 (923)
...|-+.|+.......+.-. .--+...+|..+.+|-=+ .-.++.+||+.+...++.+....
T Consensus 227 D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s---------~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 297 (380)
T 3iz6_a 227 DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS---------DDGTCRLFDMRTGHQLQVYNREPDRNDNE 297 (380)
T ss_dssp TSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC---------SSSCEEEEETTTTEEEEEECCCCSSSCCS
T ss_pred CCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc---------CCCeEEEEECCCCcEEEEecccccccccc
Confidence 34788888875544433211 123556788888777642 34689999999887776654321
Q ss_pred --ceeEEEeccCCe-EEEEe-cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceee
Q psy1644 312 --DVVFWKWISPNT-LALVT-ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQ 387 (923)
Q Consensus 312 --~VvfWkWis~~t-LglVT-~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQ 387 (923)
.|.--.|-.... |+..+ +..|+.|++........ +.....--...|..-..++++++++-.| -+|.+.
T Consensus 298 ~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~-~~~~~~~h~~~v~~l~~s~dg~~l~sgs-------~D~~i~ 369 (380)
T 3iz6_a 298 LPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLN-LGTLQNSHEGRISCLGLSSDGSALCTGS-------WDKNLK 369 (380)
T ss_dssp SCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEE-ECCSCSSCCCCCCEEEECSSSSEEEEEC-------TTSCEE
T ss_pred cCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEE-EecccCCCCCceEEEEECCCCCEEEEee-------CCCCEE
Confidence 133344443333 33332 44899999753322111 1110011123466667788888765433 467888
Q ss_pred eccccc
Q psy1644 388 LYSVER 393 (923)
Q Consensus 388 LYS~er 393 (923)
+|+...
T Consensus 370 iW~~~~ 375 (380)
T 3iz6_a 370 IWAFSG 375 (380)
T ss_dssp EEECCS
T ss_pred EEecCC
Confidence 888754
No 72
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=95.36 E-value=2.9 Score=42.76 Aligned_cols=97 Identities=13% Similarity=0.162 Sum_probs=57.0
Q ss_pred ceEEEEECCCCCCCccc---------ccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC---C
Q psy1644 243 AQVVIIDMNDPTNPIRR---------PISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM---T 310 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rr---------pi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m---~ 310 (923)
..|.+.|+.+...+.+. ....-.+..||...++++.-...+.--......+.|||+++.+.++...- .
T Consensus 273 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~ 352 (383)
T 3ei3_B 273 NEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAA 352 (383)
T ss_dssp SEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBC
T ss_pred CcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCC
Confidence 46777777665432211 12222356788888888762211100001246899999999888777664 2
Q ss_pred CceeEEEec-cCCeEEEEecCeEEEEeccC
Q psy1644 311 DDVVFWKWI-SPNTLALVTETSVYHWSMEG 339 (923)
Q Consensus 311 E~VvfWkWi-s~~tLglVT~taVYHWsi~g 339 (923)
..+..-.|- +.+.|+--.+..|..|++++
T Consensus 353 ~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 353 GIISLNKFSPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp SCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred ceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence 333333565 44567777777999999864
No 73
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=95.17 E-value=3.8 Score=43.06 Aligned_cols=82 Identities=11% Similarity=0.137 Sum_probs=50.3
Q ss_pred ceEEEEECCCCCCCcccccC--ccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC--CCceeEEEe
Q psy1644 243 AQVVIIDMNDPTNPIRRPIS--ADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM--TDDVVFWKW 318 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrpi~--ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m--~E~VvfWkW 318 (923)
..|.+.|+.++......+.. .....++|..+++|.= ....+.|||+++.+.++...+ ...|.-..|
T Consensus 372 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~ 441 (464)
T 3v7d_B 372 GSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG----------SENQFNIYNLRSGKLVHANILKDADQIWSVNF 441 (464)
T ss_dssp SEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEE----------ETTEEEEEETTTCCEEESCTTTTCSEEEEEEE
T ss_pred CcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEe----------cCCeEEEEECCCCcEEehhhccCCCcEEEEEe
Confidence 36777777765543332222 2344578888888875 245899999999988876333 566777777
Q ss_pred ccCCeEEEE-ecCeEEEE
Q psy1644 319 ISPNTLALV-TETSVYHW 335 (923)
Q Consensus 319 is~~tLglV-T~taVYHW 335 (923)
- .+.+... +...+.+|
T Consensus 442 ~-~~~l~~~~~~~g~~~i 458 (464)
T 3v7d_B 442 K-GKTLVAAVEKDGQSFL 458 (464)
T ss_dssp E-TTEEEEEEEETTEEEE
T ss_pred c-CCEEEEEEEeCCeEEE
Confidence 4 5544444 34433333
No 74
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=95.10 E-value=3.7 Score=43.42 Aligned_cols=115 Identities=10% Similarity=0.151 Sum_probs=67.0
Q ss_pred cccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCC-CceeEEEeccC---------------------Ce
Q psy1644 266 AIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMT-DDVVFWKWISP---------------------NT 323 (923)
Q Consensus 266 AIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~-E~VvfWkWis~---------------------~t 323 (923)
...+|..+.||-=+ ...++.+||+.+......+.-. ..|.--.|-.+ ..
T Consensus 240 ~~~~~~g~~l~s~s---------~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 310 (410)
T 1vyh_C 240 VRPNQDGTLIASCS---------NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF 310 (410)
T ss_dssp EEECTTSSEEEEEE---------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCE
T ss_pred EEECCCCCEEEEEc---------CCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCE
Confidence 34567777777642 3468999999887655544332 34444555432 12
Q ss_pred EEEEe-cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeeccccc-cccccccc
Q psy1644 324 LALVT-ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVER-KCSQPIEE 401 (923)
Q Consensus 324 LglVT-~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er-~~SQ~iEG 401 (923)
|+--+ +..|..|++... .+...|.-|. ..|..-..++++++++-.| -+|.+.+|.... +.-+.+.|
T Consensus 311 l~sgs~D~~i~iwd~~~~-~~~~~~~~h~----~~v~~v~~~~~g~~l~s~s-------~D~~i~vwd~~~~~~~~~~~~ 378 (410)
T 1vyh_C 311 LLSGSRDKTIKMWDVSTG-MCLMTLVGHD----NWVRGVLFHSGGKFILSCA-------DDKTLRVWDYKNKRCMKTLNA 378 (410)
T ss_dssp EEEEETTSEEEEEETTTT-EEEEEEECCS----SCEEEEEECSSSSCEEEEE-------TTTEEEEECCTTSCCCEEEEC
T ss_pred EEEEeCCCeEEEEECCCC-ceEEEEECCC----CcEEEEEEcCCCCEEEEEe-------CCCeEEEEECCCCceEEEEcC
Confidence 33333 246999998633 2333333332 3466667788888876544 467888998753 23344444
No 75
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=95.02 E-value=1.1 Score=47.74 Aligned_cols=133 Identities=6% Similarity=0.015 Sum_probs=71.8
Q ss_pred ceEEEEECCCCCCCcccccCc----cccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCC--------
Q psy1644 243 AQVVIIDMNDPTNPIRRPISA----DSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMT-------- 310 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrpi~A----DSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~-------- 310 (923)
..|.+.|+.....+.+....- -+...+ ..+.+|.=+ ...+|.+||+++.+.++.+...
T Consensus 220 ~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~---------~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~ 289 (450)
T 2vdu_B 220 EHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG---------GDDKIFAWDWKTGKNLSTFDYNSLIKPYLN 289 (450)
T ss_dssp SCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE---------SSSEEEEEETTTCCEEEEEECHHHHGGGCC
T ss_pred CcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEe---------CCCeEEEEECCCCcEeeeecchhhhhhhhh
Confidence 478888887654332211111 223344 566666542 3468999999998877766532
Q ss_pred ------------------CceeEEEeccCC-eEEEEe--cCeEEEEec-cCCC---CchhhhhcccCCCCCeeEeeeeCC
Q psy1644 311 ------------------DDVVFWKWISPN-TLALVT--ETSVYHWSM-EGDS---TPEKMFDRHSTLNGCQIINYRTDP 365 (923)
Q Consensus 311 ------------------E~VvfWkWis~~-tLglVT--~taVYHWsi-~g~s---~P~K~FdR~~~L~~~QIInYr~d~ 365 (923)
..|.=-.|..+. .|+..+ +..|+.|++ +... .+.+.+.-+ ..|.....++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-----~~v~~~~~~~ 364 (450)
T 2vdu_B 290 DQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-----YNVISLSAHN 364 (450)
T ss_dssp TTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-----SCEEEEEEET
T ss_pred hcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-----CceEEEEecC
Confidence 123333454444 455444 568999999 2222 333333222 3567777777
Q ss_pred CCCeEEEEeeecccc--cccceeeeccccc
Q psy1644 366 KQTWLLLIGISAVSN--RVVGAMQLYSVER 393 (923)
Q Consensus 366 ~~kW~~LvGI~~~~~--~i~G~mQLYS~er 393 (923)
+. +++.....+. .-...+++|..+.
T Consensus 365 ~~---~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 365 DE---FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp TE---EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred Cc---EEEEEecccCCCCCCcceEEEEEEc
Confidence 53 2333333222 1245688888754
No 76
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=94.96 E-value=4 Score=42.24 Aligned_cols=126 Identities=10% Similarity=0.127 Sum_probs=71.8
Q ss_pred ceEEEEECCCCCCCccc---ccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC---CCceeEE
Q psy1644 243 AQVVIIDMNDPTNPIRR---PISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM---TDDVVFW 316 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rr---pi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m---~E~VvfW 316 (923)
..|.+.|+.....+... .-..-+...+|..+.+|-=+ ...++.+||+.+...+..+.. ...+.-.
T Consensus 220 g~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s---------~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 290 (354)
T 2pbi_B 220 KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS---------DDATCRLYDLRADREVAIYSKESIIFGASSV 290 (354)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE---------TTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred CeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe---------CCCeEEEEECCCCcEEEEEcCCCcccceeEE
Confidence 36667776654322111 11123456788888777652 356899999987765544332 2244555
Q ss_pred EeccCCeEEEE-e-cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeec
Q psy1644 317 KWISPNTLALV-T-ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389 (923)
Q Consensus 317 kWis~~tLglV-T-~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLY 389 (923)
.|-.+..+-++ + +..|+.|++.... +...+..|. ..|..-..++++++++-.+ -+|.+.+|
T Consensus 291 ~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~l~~h~----~~v~~l~~spdg~~l~sgs-------~D~~v~vW 353 (354)
T 2pbi_B 291 DFSLSGRLLFAGYNDYTINVWDVLKGS-RVSILFGHE----NRVSTLRVSPDGTAFCSGS-------WDHTLRVW 353 (354)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCS-EEEEECCCS----SCEEEEEECTTSSCEEEEE-------TTSEEEEE
T ss_pred EEeCCCCEEEEEECCCcEEEEECCCCc-eEEEEECCC----CcEEEEEECCCCCEEEEEc-------CCCCEEec
Confidence 56544443333 3 3489999985332 333333332 3577788888888876543 34555555
No 77
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=94.95 E-value=3.2 Score=41.06 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=39.7
Q ss_pred ccEEEEEecCCCCCCCCCcccceeeeecCCCccCCcceeEEeccccc-eEEEEeeeeeEEEEec-ccceee
Q psy1644 29 GGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYD-VVYLITKFGYIHVYDI-ETATCI 97 (923)
Q Consensus 29 ~gkLhiiEig~~~~g~~~f~kK~vd~~Fppe~~~DFPvamqiS~k~G-~iyliTK~G~lhl~Dl-et~t~i 97 (923)
.|.++|.++.+. ....+ ....+ ...+-..++..++.-. .++.-+..|.|++||+ +++...
T Consensus 32 d~~v~iw~~~~~---~~~~~---~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 93 (342)
T 1yfq_A 32 DGSLTVYKFDIQ---AKNVD---LLQSL---RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ 93 (342)
T ss_dssp TSEEEEEEEETT---TTEEE---EEEEE---ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE
T ss_pred CCeEEEEEeCCC---Ccccc---ceeee---ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceE
Confidence 358889888642 11111 11111 1244566788888877 8999999999999999 887663
No 78
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=94.90 E-value=0.25 Score=51.36 Aligned_cols=108 Identities=8% Similarity=0.024 Sum_probs=72.5
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEeccCCeEEEEecCeEEEEeccCCCCch
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTETSVYHWSMEGDSTPE 344 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis~~tLglVT~taVYHWsi~g~s~P~ 344 (923)
..-+.|..+.+|+-|. ..+++.|||+.+.+.+..+..+++|.-.+| +++.+.++++..|+.|++.....+.
T Consensus 63 ~~~~~~~~~~~~~~~~--------~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~-~~~~~~~~~~~~i~i~d~~~~~~~~ 133 (355)
T 3vu4_A 63 KVRMLHRTNYVAFVTG--------VKEVVHIWDDVKKQDVSRIKVDAPVKDLFL-SREFIVVSYGDVISVFKFGNPWKRI 133 (355)
T ss_dssp EEEECTTSSEEEEECS--------STTEEEEEETTTTEEEEEEECSSCEEEEEE-CSSEEEEEETTEEEEEESSTTCCBS
T ss_pred EEEEcCCCCEEEEEEC--------CccEEEEEECCCCcEEEEEECCCceEEEEE-cCCEEEEEEcCEEEEEECCCCceee
Confidence 3456777888888742 225999999999999999999999988887 6778889999999999997553333
Q ss_pred hhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeeccccccc
Q psy1644 345 KMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERKC 395 (923)
Q Consensus 345 K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~~ 395 (923)
+.|.- ...+..... +.+++. .+.-.|.+++|..+.+.
T Consensus 134 ~~~~~-----~~~~~~~s~----~~la~~-----sg~~~g~v~iwd~~~~~ 170 (355)
T 3vu4_A 134 TDDIR-----FGGVCEFSN----GLLVYS-----NEFNLGQIHITKLQSSG 170 (355)
T ss_dssp SCCEE-----EEEEEEEET----TEEEEE-----ESSCTTCEEEEECCC--
T ss_pred EEecc-----CCceEEEEc----cEEEEe-----CCCcCcEEEEEECCCCC
Confidence 33322 111222111 333333 12456889999987643
No 79
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.84 E-value=3.5 Score=40.96 Aligned_cols=119 Identities=9% Similarity=0.057 Sum_probs=64.7
Q ss_pred eEEEEECCCCCCCccccc--CccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccc-----cCCCceeEE
Q psy1644 244 QVVIIDMNDPTNPIRRPI--SADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAH-----PMTDDVVFW 316 (923)
Q Consensus 244 qVvIVDL~n~~~v~Rrpi--~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~-----~m~E~VvfW 316 (923)
+|.++|+........-+. ...+...+|..+.+..=+. ..+..+.+|+++...++... .......-.
T Consensus 109 ~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~-------~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 181 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDR-------SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNI 181 (331)
T ss_dssp EEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEE-------TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEE
T ss_pred cEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEec-------CCCceEEEEEECCCCcEeecCCccccCCCCccce
Confidence 788888876543322222 2246678898764333211 02334999998764443221 122334445
Q ss_pred EeccCCeEEEEe---cCeEEEEeccCCCCc--hhhhhcccCCCCCeeEeeeeCCCCCeEEEEe
Q psy1644 317 KWISPNTLALVT---ETSVYHWSMEGDSTP--EKMFDRHSTLNGCQIINYRTDPKQTWLLLIG 374 (923)
Q Consensus 317 kWis~~tLglVT---~taVYHWsi~g~s~P--~K~FdR~~~L~~~QIInYr~d~~~kW~~LvG 374 (923)
.|-.+....+|+ ...|+.|++...... ...+. .+..+.....++|++|+++..
T Consensus 182 ~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-----~~~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 182 TFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-----TNNLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp EECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-----CSSCCCCEEECTTSSEEEEEC
T ss_pred EECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-----CCCCCceEEECCCCCEEEEEE
Confidence 565555434444 346999998643321 22222 124455667889999887653
No 80
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.73 E-value=0.78 Score=46.80 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=35.8
Q ss_pred eEEEEECCCCCCCcc--------cccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccccc
Q psy1644 244 QVVIIDMNDPTNPIR--------RPISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKM 304 (923)
Q Consensus 244 qVvIVDL~n~~~v~R--------rpi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KL 304 (923)
.|.+.|+.....+.+ .++...+.-.+|..+.+|.=+ +.+..++||+++...|.
T Consensus 236 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s--------~~d~~i~v~~~~~~~~~ 296 (343)
T 3lrv_A 236 TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYS--------NESNSLTIYKFDKKTKN 296 (343)
T ss_dssp BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEE--------TTTTEEEEEEECTTTCS
T ss_pred eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEec--------CCCCcEEEEEEcccccc
Confidence 899999988765432 222222477899999999842 02568999999876553
No 81
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=94.71 E-value=1.7 Score=42.99 Aligned_cols=82 Identities=13% Similarity=0.047 Sum_probs=52.5
Q ss_pred CCCeEEEEecccc---cccccccCCC-------------ceeEEEeccCC-eEEEEe-cCeEEEEeccCCCCchhhhhcc
Q psy1644 289 APKTLQIFNIEMK---SKMKAHPMTD-------------DVVFWKWISPN-TLALVT-ETSVYHWSMEGDSTPEKMFDRH 350 (923)
Q Consensus 289 ~g~~LQIFNle~K---~KLKs~~m~E-------------~VvfWkWis~~-tLglVT-~taVYHWsi~g~s~P~K~FdR~ 350 (923)
....+.+|++++. ..+..+.-.. .|.--.|-.+. .|+..+ +..|+.|++... .+.+.|.-|
T Consensus 236 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~ 314 (368)
T 3mmy_A 236 IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR-TKLKTSEQL 314 (368)
T ss_dssp TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEECCCC
T ss_pred CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC-cEEEEecCC
Confidence 3578999999887 3343433333 46667776554 555554 447999998642 333334333
Q ss_pred cCCCCCeeEeeeeCCCCCeEEEEee
Q psy1644 351 STLNGCQIINYRTDPKQTWLLLIGI 375 (923)
Q Consensus 351 ~~L~~~QIInYr~d~~~kW~~LvGI 375 (923)
...|..-.-++++++++..|-
T Consensus 315 ----~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 315 ----DQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp ----SSCEEEEEECTTSSCEEEEEC
T ss_pred ----CCCceEEEECCCCCeEEEEec
Confidence 346778888999999887763
No 82
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=94.66 E-value=0.72 Score=45.77 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=40.4
Q ss_pred CceEEEEECCCCCCCcccc--cCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCC
Q psy1644 242 SAQVVIIDMNDPTNPIRRP--ISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMT 310 (923)
Q Consensus 242 ~~qVvIVDL~n~~~v~Rrp--i~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~ 310 (923)
.++|.++|+.......+-+ -...+...+|..+.|++-+ ....|.+||+++.+.++.+.++
T Consensus 274 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---------~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 274 LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG---------TFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES---------BSSEEEEEETTTTEEEEEEECS
T ss_pred cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEec---------CCCeEEEEeccccceeeeeecC
Confidence 3589999998754332222 2234667788877666631 3478999999998888877654
No 83
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=94.64 E-value=3.3 Score=41.66 Aligned_cols=36 Identities=14% Similarity=0.015 Sum_probs=29.2
Q ss_pred eeEEeccccceEEEEeeeeeEEEEecccceeeeecc
Q psy1644 66 VAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNR 101 (923)
Q Consensus 66 vamqiS~k~G~iyliTK~G~lhl~Dlet~t~iy~~r 101 (923)
-++..++.-..|..-+..|.|+|||+++|.++..-+
T Consensus 59 ~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 94 (304)
T 2ynn_A 59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94 (304)
T ss_dssp EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEe
Confidence 356677777788888899999999999999876533
No 84
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=94.27 E-value=6.4 Score=41.49 Aligned_cols=88 Identities=7% Similarity=0.096 Sum_probs=52.4
Q ss_pred CceEEEEECCCCCCCccccc-CccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC-CCceeEEEec
Q psy1644 242 SAQVVIIDMNDPTNPIRRPI-SADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM-TDDVVFWKWI 319 (923)
Q Consensus 242 ~~qVvIVDL~n~~~v~Rrpi-~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m-~E~VvfWkWi 319 (923)
...|.+.|+.+...+..-+- ...-.-+.+..+.++.=+ ...++.+||+++.+.++.+.- ...|.--.|
T Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~---------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~- 344 (435)
T 1p22_A 275 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS---------SDNTIRLWDIECGACLRVLEGHEELVRCIRF- 344 (435)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEE---------TTSCEEEEETTTCCEEEEECCCSSCEEEEEC-
T ss_pred CCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEe---------CCCeEEEEECCCCCEEEEEeCCcCcEEEEEe-
Confidence 34788888876543222110 001111222233444321 346899999999888877664 445666666
Q ss_pred cCCeEEEEec-CeEEEEeccC
Q psy1644 320 SPNTLALVTE-TSVYHWSMEG 339 (923)
Q Consensus 320 s~~tLglVT~-taVYHWsi~g 339 (923)
+.+.|+..+. ..|..|++..
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHH
T ss_pred cCCEEEEEeCCCcEEEEECCC
Confidence 7888777764 4799999854
No 85
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=94.12 E-value=4.9 Score=39.55 Aligned_cols=134 Identities=8% Similarity=0.144 Sum_probs=70.8
Q ss_pred ceEEEEECCCCCCCc-----ccccC----ccccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccc-cc---cccc-
Q psy1644 243 AQVVIIDMNDPTNPI-----RRPIS----ADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKS-KM---KAHP- 308 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~-----Rrpi~----ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~-KL---Ks~~- 308 (923)
..|.++|+....... +.... ..+...+|..+.+++-+. ....+.+|+++.+. ++ +...
T Consensus 151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~--------~~~~i~~~~~~~~~g~~~~~~~~~~ 222 (343)
T 1ri6_A 151 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE--------LNSSVDVWELKDPHGNIECVQTLDM 222 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET--------TTTEEEEEESSCTTSCCEEEEEEEC
T ss_pred CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC--------CCCEEEEEEecCCCCcEEEEeeccc
Confidence 367788876533322 11121 123567899875554421 34689999996521 22 1111
Q ss_pred CCC------ceeEEEeccCCeEEEEec---CeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeeccc
Q psy1644 309 MTD------DVVFWKWISPNTLALVTE---TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVS 379 (923)
Q Consensus 309 m~E------~VvfWkWis~~tLglVT~---taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~ 379 (923)
+++ .+.--.|-.+...-+|+. ..|+.|+++.+..-.+...+.+. +..+.+...+++++|+++.+-
T Consensus 223 ~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~---- 296 (343)
T 1ri6_A 223 MPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT--ETQPRGFNVDHSGKYLIAAGQ---- 296 (343)
T ss_dssp SCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC--SSSCCCEEECTTSSEEEEECT----
T ss_pred cCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC--CCccceEEECCCCCEEEEecC----
Confidence 222 122345655543334443 58999999632211111111111 112556677889999876542
Q ss_pred ccccceeeecccc
Q psy1644 380 NRVVGAMQLYSVE 392 (923)
Q Consensus 380 ~~i~G~mQLYS~e 392 (923)
-.|.+.+|.++
T Consensus 297 --~~~~v~v~~~d 307 (343)
T 1ri6_A 297 --KSHHISVYEIV 307 (343)
T ss_dssp --TTCEEEEEEEE
T ss_pred --CCCeEEEEEEc
Confidence 34788898765
No 86
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=93.98 E-value=7.5 Score=41.25 Aligned_cols=134 Identities=10% Similarity=0.083 Sum_probs=78.5
Q ss_pred CceEEEEECCCCCCCc--ccccC-----ccccccCCC---ccEEEEeccCCCCCCCCCCCeEEEEeccccccccccc--C
Q psy1644 242 SAQVVIIDMNDPTNPI--RRPIS-----ADSAIMNPA---SKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHP--M 309 (923)
Q Consensus 242 ~~qVvIVDL~n~~~v~--Rrpi~-----ADSAIMnP~---~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~--m 309 (923)
...|.++|+.+..... .+.+. .-+...+|. .+.|+-=+ ...++.|||+++...++.+. .
T Consensus 170 ~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~---------~d~~i~vwd~~~~~~~~~~~~~h 240 (450)
T 2vdu_B 170 FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD---------RDEHIKISHYPQCFIVDKWLFGH 240 (450)
T ss_dssp TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE---------TTSCEEEEEESCTTCEEEECCCC
T ss_pred CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEc---------CCCcEEEEECCCCceeeeeecCC
Confidence 3478889988765431 01111 123456787 66666542 34689999999887666532 2
Q ss_pred CCceeEEEeccCCeEEEEecC-eEEEEeccCCCCchhhhhccc---------------------CCCCCeeEeeeeCCCC
Q psy1644 310 TDDVVFWKWISPNTLALVTET-SVYHWSMEGDSTPEKMFDRHS---------------------TLNGCQIINYRTDPKQ 367 (923)
Q Consensus 310 ~E~VvfWkWis~~tLglVT~t-aVYHWsi~g~s~P~K~FdR~~---------------------~L~~~QIInYr~d~~~ 367 (923)
...|.--.|-+.+.|+..+.. .|..|++.... +.+.+..+. .-....|......+++
T Consensus 241 ~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 319 (450)
T 2vdu_B 241 KHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGK-NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL 319 (450)
T ss_dssp SSCEEEEEECSTTEEEEEESSSEEEEEETTTCC-EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred CCceEEEEECCCCEEEEEeCCCeEEEEECCCCc-EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence 345555555566777766644 89999986432 222222110 0112346666777777
Q ss_pred CeEEEEeeecccccccceeeeccc
Q psy1644 368 TWLLLIGISAVSNRVVGAMQLYSV 391 (923)
Q Consensus 368 kW~~LvGI~~~~~~i~G~mQLYS~ 391 (923)
++++..+ .-.|.+.+|.+
T Consensus 320 ~~l~~~~------~~d~~i~iw~~ 337 (450)
T 2vdu_B 320 PFVAFFV------EATKCIIILEM 337 (450)
T ss_dssp SEEEEEE------TTCSEEEEEEE
T ss_pred CEEEEEE------CCCCeEEEEEe
Confidence 8765443 13578888988
No 87
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=93.90 E-value=6.3 Score=40.09 Aligned_cols=280 Identities=13% Similarity=0.167 Sum_probs=137.8
Q ss_pred CccEEEEEecCCCCCCCCCcccceeeeecCCCccCCcceeEEeccccceEEEEeee----eeEEEEeccc--ceeeeecc
Q psy1644 28 AGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYDVVYLITKF----GYIHVYDIET--ATCIYMNR 101 (923)
Q Consensus 28 ~~gkLhiiEig~~~~g~~~f~kK~vd~~Fppe~~~DFPvamqiS~k~G~iyliTK~----G~lhl~Dlet--~t~iy~~r 101 (923)
.++.+++..++..+ |.. +.+... ....|-+|.+|+.-..||..... |.+.+|++.. |..-.-..
T Consensus 25 ~~~~i~~~~~d~~~-g~~----~~~~~~-----~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~ 94 (361)
T 3scy_A 25 NSKGIYTFRFNEET-GES----LPLSDA-----EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNT 94 (361)
T ss_dssp SCCEEEEEEEETTT-CCE----EEEEEE-----ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEEeCCC-CCE----EEeecc-----cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeE
Confidence 34588888886432 221 111111 36778888999988889998875 8999998876 43321111
Q ss_pred cCCCcEEEeeccCCCcceEEEecCCcceeeeeeeceeecccceeEEEecccccceEEEEecCCCCCCCccCccccccccC
Q psy1644 102 ISSDTIFVTAPHEATGGIIGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 181 (923)
Q Consensus 102 IS~~~if~ta~~~~t~Gil~vn~~G~~~~si~~~t~tm~sdk~ic~~~~~~~~~~vviid~~~~~~~~r~~~~a~~~im~ 181 (923)
+. ..|..|..+++ .++++-+-.. +...|.++|+... ..++++.. .
T Consensus 95 ~~--------------------~~~~~p~~~~~------dg~~l~~~~~--~~~~v~~~~~~~~-g~~~~~~~---~--- 139 (361)
T 3scy_A 95 QK--------------------TMGADPCYLTT------NGKNIVTANY--SGGSITVFPIGQD-GALLPASD---V--- 139 (361)
T ss_dssp EE--------------------CSSSCEEEEEE------CSSEEEEEET--TTTEEEEEEBCTT-SCBCSCSE---E---
T ss_pred ec--------------------cCCCCcEEEEE------CCCEEEEEEC--CCCEEEEEEeCCC-CcCcccce---e---
Confidence 11 11223444444 3344333221 2356788887643 22221110 0
Q ss_pred cccchhhhcCCCCCCCCCCcccceeeeccccccccCCcccccceeeecc-eEEEEEeccCCCceEEEEECCCCCC-----
Q psy1644 182 PASKVIALKGKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESD-KFICVREKIAESAQVVIIDMNDPTN----- 255 (923)
Q Consensus 182 p~~~i~al~~~~~~~~~~~~~~~~e~~~Lt~lGI~~~si~F~~lTmESD-kyICVRE~~~~~~qVvIVDL~n~~~----- 255 (923)
+...|... +|..+. +- ....+.+..| +++.+-.. +...|.++|+.....
T Consensus 140 -----~~~~g~~~---~~~~~~----------~~-----~~~~~~~spdg~~l~~~~~--~~~~v~v~~~~~~~~~~~~~ 194 (361)
T 3scy_A 140 -----IEFKGSGP---DKERQT----------MP-----HLHCVRITPDGKYLLADDL--GTDQIHKFNINPNANADNKE 194 (361)
T ss_dssp -----EECCCCCS---CTTTCS----------SC-----CEEEEEECTTSSEEEEEET--TTTEEEEEEECTTCCTTTCC
T ss_pred -----EEccCCCC---CccccC----------CC-----cceEEEECCCCCEEEEEeC--CCCEEEEEEEcCCCCccccc
Confidence 11111111 010000 00 0112333322 34444332 334777777765442
Q ss_pred -Cc------ccccC----ccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccc--ccccc-CCC---ceeEEEe
Q psy1644 256 -PI------RRPIS----ADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSK--MKAHP-MTD---DVVFWKW 318 (923)
Q Consensus 256 -v~------Rrpi~----ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~K--LKs~~-m~E---~VvfWkW 318 (923)
.. +.... ..+...+|..+.+++-.. ....+.+|++++..- +.... .++ ...--.|
T Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--------~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~ 266 (361)
T 3scy_A 195 KFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE--------IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHL 266 (361)
T ss_dssp CCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--------TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEE
T ss_pred ceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC--------CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEE
Confidence 11 11111 225677999887766521 246899999985421 22211 111 1122334
Q ss_pred ccCCeEEEEec----CeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeeccccc
Q psy1644 319 ISPNTLALVTE----TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVER 393 (923)
Q Consensus 319 is~~tLglVT~----taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er 393 (923)
=.+....+|+. ..|..|+++......+...+.+. +..+.+...++|++|+++.+- -.|.+++|.++.
T Consensus 267 spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~------~~~~v~v~~~d~ 337 (361)
T 3scy_A 267 SPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKYLLVACR------DTNVIQIFERDQ 337 (361)
T ss_dssp CTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCEEEEEET------TTTEEEEEEECT
T ss_pred CCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCCCEEEEEEC------CCCCEEEEEEEC
Confidence 44444444442 46888988532211112222222 455667788999999876542 246788887763
No 88
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.82 E-value=5.4 Score=42.27 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=43.9
Q ss_pred CccccccCCCccEEEEeccCCCCCC---CCCCCeEEEEecccccccccccCC--CceeEEEeccC--CeEEEEecCeEEE
Q psy1644 262 SADSAIMNPASKVIALKGKAGNDNN---PNAPKTLQIFNIEMKSKMKAHPMT--DDVVFWKWISP--NTLALVTETSVYH 334 (923)
Q Consensus 262 ~ADSAIMnP~~~IIALra~~~~~n~---~~~g~~LQIFNle~K~KLKs~~m~--E~VvfWkWis~--~tLglVT~taVYH 334 (923)
..-.+..||...+++.-....+... ...++.++|||.++.+.+....-. ..|.-=.+.++ +.|+--.+..|+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~i 425 (435)
T 4e54_B 346 TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILI 425 (435)
T ss_dssp CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEE
T ss_pred eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEE
Confidence 3445677888888877532111000 013568999999987766543221 22221112243 4566666779999
Q ss_pred Eecc
Q psy1644 335 WSME 338 (923)
Q Consensus 335 Wsi~ 338 (923)
|+++
T Consensus 426 W~~~ 429 (435)
T 4e54_B 426 WSQQ 429 (435)
T ss_dssp CCCC
T ss_pred EECC
Confidence 9985
No 89
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=93.81 E-value=1.6 Score=42.43 Aligned_cols=86 Identities=13% Similarity=0.126 Sum_probs=54.7
Q ss_pred eEEEEECCCCCCCcccc---cCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCC-ceeEEEec
Q psy1644 244 QVVIIDMNDPTNPIRRP---ISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTD-DVVFWKWI 319 (923)
Q Consensus 244 qVvIVDL~n~~~v~Rrp---i~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E-~VvfWkWi 319 (923)
.|.+.|+.+...+.+.. -..-+...+|...+++-- ....+.+||+++.+.++.+.... .|.--.|.
T Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~ 275 (313)
T 3odt_A 206 LIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG----------EDRTVRIWSKENGSLKQVITLPAISIWSVDCM 275 (313)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEE----------TTSEEEEECTTTCCEEEEEECSSSCEEEEEEC
T ss_pred eEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEe----------cCCEEEEEECCCCceeEEEeccCceEEEEEEc
Confidence 56666665543222111 011234567777555433 35689999999998888877755 67777888
Q ss_pred cCCeEEEEe-cCeEEEEeccC
Q psy1644 320 SPNTLALVT-ETSVYHWSMEG 339 (923)
Q Consensus 320 s~~tLglVT-~taVYHWsi~g 339 (923)
.+..+...+ +..|+.|+++.
T Consensus 276 ~~~~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 276 SNGDIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp TTSCEEEEETTSCEEEEESCG
T ss_pred cCCCEEEEeCCCcEEEEeCCC
Confidence 776654433 34899999864
No 90
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=93.80 E-value=13 Score=44.77 Aligned_cols=117 Identities=9% Similarity=0.008 Sum_probs=69.1
Q ss_pred CceEE-EEECCCCCCCccc---ccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccc-cCCCceeEE
Q psy1644 242 SAQVV-IIDMNDPTNPIRR---PISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAH-PMTDDVVFW 316 (923)
Q Consensus 242 ~~qVv-IVDL~n~~~v~Rr---pi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~-~m~E~VvfW 316 (923)
...+. ++|+.... +.+- .....+.-.+|..+.||.-+ ....|.+||+++++..+.. .....+.-+
T Consensus 357 ~~~l~~~~d~~~~~-~~~l~~~~~~~~~~~~SpDG~~la~~~---------~~~~v~~~d~~tg~~~~~~~~~~~~v~~~ 426 (1045)
T 1k32_A 357 EGDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVAN---------DRFEIMTVDLETGKPTVIERSREAMITDF 426 (1045)
T ss_dssp TEEEEEEEETTTCC-EEECCCCCCSEEEEEECTTSSEEEEEE---------TTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred CCceEEEEECCCCC-ceEecCCccceeeeEECCCCCEEEEEC---------CCCeEEEEECCCCceEEeccCCCCCccce
Confidence 34787 88886543 1111 11223556789988888762 3458999999987654443 234455667
Q ss_pred EeccCC-eEEEEec-----------CeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEe
Q psy1644 317 KWISPN-TLALVTE-----------TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIG 374 (923)
Q Consensus 317 kWis~~-tLglVT~-----------taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvG 374 (923)
.|-.+. .|+.... ..||.|++.+.. +..+. .| ...+..-.-++|+++++..+
T Consensus 427 ~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~-~~----~~~~~~~~~spdG~~l~~~s 490 (1045)
T 1k32_A 427 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT-TE----NSHDYAPAFDADSKNLYYLS 490 (1045)
T ss_dssp EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS-CS----SSBEEEEEECTTSCEEEEEE
T ss_pred EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee-CC----CcccCCceEcCCCCEEEEEe
Confidence 786444 4666654 379999997532 22221 11 12344455678888776543
No 91
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=93.80 E-value=6.6 Score=40.03 Aligned_cols=114 Identities=16% Similarity=0.141 Sum_probs=66.4
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEecc-cccccccccCCCceeEEEeccCC-eEEEEecCeEEEEeccCC-C
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIE-MKSKMKAHPMTDDVVFWKWISPN-TLALVTETSVYHWSMEGD-S 341 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle-~K~KLKs~~m~E~VvfWkWis~~-tLglVT~taVYHWsi~g~-s 341 (923)
+.-.+|..+.||-=+ ...++.|||+. .+...+.+.....|.=-.|-.+. .++.-++..|..|++... .
T Consensus 218 ~~~~s~~g~~l~sgs---------~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 218 HLSISPNGKYIATGG---------KDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSK 288 (343)
T ss_dssp EEEECTTSSEEEEEE---------TTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCS
T ss_pred EEEECCCCCEEEEEc---------CCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCC
Confidence 345688888877652 34689999994 44444444344455555664443 344445678999998543 2
Q ss_pred Cchhhhhccc-----CC--CCCeeEeeeeCCCCCeEEEEeeecccccccceeeecccccc
Q psy1644 342 TPEKMFDRHS-----TL--NGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERK 394 (923)
Q Consensus 342 ~P~K~FdR~~-----~L--~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~ 394 (923)
.+...+..++ .. ....|....-++++++++..+ -+|.+.+|+.+.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-------~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 289 APVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF-------TDGVIRTFSFETS 341 (343)
T ss_dssp CSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE-------TTSEEEEEEEEEE
T ss_pred CceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec-------CCceEEEEEEEcc
Confidence 2211221110 01 123466667778888875433 4688889887643
No 92
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=93.75 E-value=1.3 Score=44.90 Aligned_cols=94 Identities=12% Similarity=0.011 Sum_probs=55.9
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccc------------------ccccccccCCCceeEEEeccCC-eEE
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEM------------------KSKMKAHPMTDDVVFWKWISPN-TLA 325 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~------------------K~KLKs~~m~E~VvfWkWis~~-tLg 325 (923)
+...+|..+.+|.=+ ...++.+||+++ .+.+..+.....|.--.|-.+. .|+
T Consensus 151 ~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 151 SLDWHPNNVLLAAGC---------ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALA 221 (377)
T ss_dssp EEEECTTSSEEEEEE---------SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEE
T ss_pred EEEEcCCCCEEEEEe---------CCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEE
Confidence 455788888777752 346899999963 3334444344556666776544 455
Q ss_pred EEec-CeEEEEeccCCCCc---hhhhhcccCCCCCeeEeeeeCCCCCeEE
Q psy1644 326 LVTE-TSVYHWSMEGDSTP---EKMFDRHSTLNGCQIINYRTDPKQTWLL 371 (923)
Q Consensus 326 lVT~-taVYHWsi~g~s~P---~K~FdR~~~L~~~QIInYr~d~~~kW~~ 371 (923)
..+. ..|..|++.....| .+.+..| ...|..-..++++++++
T Consensus 222 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~ 267 (377)
T 3dwl_C 222 YAGHDSSVTIAYPSAPEQPPRALITVKLS----QLPLRSLLWANESAIVA 267 (377)
T ss_dssp EEETTTEEC-CEECSTTSCEEECCCEECS----SSCEEEEEEEETTEEEE
T ss_pred EEeCCCcEEEEECCCCCCcceeeEeecCC----CCceEEEEEcCCCCEEE
Confidence 5554 48999999765543 2233332 23466666667777653
No 93
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=93.58 E-value=6.5 Score=40.71 Aligned_cols=36 Identities=11% Similarity=0.139 Sum_probs=27.7
Q ss_pred cceeEEeccccceEEEEeeeeeEEEEecccceeeee
Q psy1644 64 FPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYM 99 (923)
Q Consensus 64 FPvamqiS~k~G~iyliTK~G~lhl~Dlet~t~iy~ 99 (923)
.--++..+..-..|..-+..|.|+|||++++.++..
T Consensus 156 ~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~ 191 (354)
T 2pbi_B 156 YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS 191 (354)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Confidence 344566666666777888899999999999988754
No 94
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=93.56 E-value=4.3 Score=41.54 Aligned_cols=63 Identities=10% Similarity=0.175 Sum_probs=41.6
Q ss_pred cccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC-CCceeEEEeccC-CeEEEEec-CeEEEEec
Q psy1644 266 AIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM-TDDVVFWKWISP-NTLALVTE-TSVYHWSM 337 (923)
Q Consensus 266 AIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m-~E~VvfWkWis~-~tLglVT~-taVYHWsi 337 (923)
...+|..+.||-=+ ...++.|||+++.+.++.+.- .+.|.=-.|-.+ +.|+-... ..|..|+.
T Consensus 254 ~~~sp~~~~l~s~s---------~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 254 VAFCPDDTHFVSSS---------SDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEECTTSSEEEEEE---------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEECCCCCEEEEEe---------CCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 45678877776642 346899999999888877643 455655666544 34544443 36888875
No 95
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=93.47 E-value=6.6 Score=38.89 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=55.4
Q ss_pred CceEEEEECCCCCCCcccc-----------------cCccccccCCC--ccEEEEeccCCCCCCCCCCCeEEEEeccccc
Q psy1644 242 SAQVVIIDMNDPTNPIRRP-----------------ISADSAIMNPA--SKVIALKGKAGNDNNPNAPKTLQIFNIEMKS 302 (923)
Q Consensus 242 ~~qVvIVDL~n~~~v~Rrp-----------------i~ADSAIMnP~--~~IIALra~~~~~n~~~~g~~LQIFNle~K~ 302 (923)
...|.+.|+.+.....+.- -..-+.-++|. .+.||.=+ ....|.+||+++.+
T Consensus 250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~---------~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN---------QVGKLYVWDLEVED 320 (366)
T ss_dssp SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC---------TTSCEEEEECCSSS
T ss_pred CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe---------cCCcEEEEECCCCC
Confidence 4588999987765422110 01223445666 78888752 34689999999865
Q ss_pred -------ccccccCCCceeEEEeccCC-eEEEEecC-eEEEEecc
Q psy1644 303 -------KMKAHPMTDDVVFWKWISPN-TLALVTET-SVYHWSME 338 (923)
Q Consensus 303 -------KLKs~~m~E~VvfWkWis~~-tLglVT~t-aVYHWsi~ 338 (923)
.+..|.....|.--.|-.+. .|+-.+.. .|+.|++.
T Consensus 321 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 321 PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 34444445778888887554 55555543 89999873
No 96
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=93.28 E-value=6.4 Score=39.68 Aligned_cols=134 Identities=10% Similarity=0.211 Sum_probs=69.3
Q ss_pred ceEEEEECCCCCCCcc---cccC----ccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccc-ccc---ccc-cCC
Q psy1644 243 AQVVIIDMNDPTNPIR---RPIS----ADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMK-SKM---KAH-PMT 310 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~R---rpi~----ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K-~KL---Ks~-~m~ 310 (923)
++|.++|+........ .... ..+...+|..+.+++=+. .+..+++|+++.. .++ ... ..+
T Consensus 162 ~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--------~~~~v~v~~~~~~~g~~~~~~~~~~~~ 233 (347)
T 3hfq_A 162 DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE--------LSSQIASLKYDTQTGAFTQLGIVKTIP 233 (347)
T ss_dssp TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--------TTTEEEEEEEETTTTEEEEEEEEESSC
T ss_pred CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC--------CCCEEEEEEecCCCCceEEeeeeeecC
Confidence 4677777763222211 0111 224578899885555311 3568999999851 121 111 112
Q ss_pred C------ceeEEEeccCCeEEEEe---cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeeccccc
Q psy1644 311 D------DVVFWKWISPNTLALVT---ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNR 381 (923)
Q Consensus 311 E------~VvfWkWis~~tLglVT---~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~ 381 (923)
. .+.--.|-.+.....|+ ...|..|+++.+..... ..+.+ ..+..+.+...++|++|+++.+-
T Consensus 234 ~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~-~~~~~-~~~~~~~~~~~spdg~~l~v~~~------ 305 (347)
T 3hfq_A 234 ADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTL-IQQIS-TEGDFPRDFDLDPTEAFVVVVNQ------ 305 (347)
T ss_dssp TTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEE-EEEEE-CSSSCCCEEEECTTSSEEEEEET------
T ss_pred CCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEE-eEEEe-cCCCCcCeEEECCCCCEEEEEEc------
Confidence 1 12223444444433343 35799999863222111 11111 11234556678999999876542
Q ss_pred ccceeeecccc
Q psy1644 382 VVGAMQLYSVE 392 (923)
Q Consensus 382 i~G~mQLYS~e 392 (923)
-.|.+++|.++
T Consensus 306 ~~~~v~v~~~d 316 (347)
T 3hfq_A 306 NTDNATLYARD 316 (347)
T ss_dssp TTTEEEEEEEC
T ss_pred CCCcEEEEEEe
Confidence 23678899664
No 97
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=93.25 E-value=6.5 Score=39.26 Aligned_cols=37 Identities=5% Similarity=-0.083 Sum_probs=29.2
Q ss_pred CcceeEEeccccceEEEEeeeeeEEEEecccceeeee
Q psy1644 63 DFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYM 99 (923)
Q Consensus 63 DFPvamqiS~k~G~iyliTK~G~lhl~Dlet~t~iy~ 99 (923)
+-..+|..++.-..+...+..|.|++||++++.+...
T Consensus 53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 89 (372)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee
Confidence 3445777887777888888899999999999975443
No 98
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=93.21 E-value=6.5 Score=38.07 Aligned_cols=38 Identities=8% Similarity=0.042 Sum_probs=30.2
Q ss_pred CCcceeEEeccc--cceEEEEeeeeeEEEEecccceeeee
Q psy1644 62 NDFPVAMQVSAK--YDVVYLITKFGYIHVYDIETATCIYM 99 (923)
Q Consensus 62 ~DFPvamqiS~k--~G~iyliTK~G~lhl~Dlet~t~iy~ 99 (923)
.+-..+|..++. -..+...+..|.|++||+.++.++..
T Consensus 110 ~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 110 KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS 149 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence 445567788877 66788888999999999999887654
No 99
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=93.18 E-value=7.2 Score=38.54 Aligned_cols=55 Identities=7% Similarity=0.056 Sum_probs=32.5
Q ss_pred CceEEEEECCCCCC---C--cccccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccccccccc
Q psy1644 242 SAQVVIIDMNDPTN---P--IRRPISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHP 308 (923)
Q Consensus 242 ~~qVvIVDL~n~~~---v--~Rrpi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~ 308 (923)
..+|.++|+..... . ...|-...+..++|..++++ - +..+.+||+++.+.++...
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~-~-----------~~~i~~~d~~~~~~~~~~~ 183 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV-A-----------GPDIYKMDVKTGKYTVALP 183 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE-E-----------SSSEEEECTTTCCEEEEEC
T ss_pred CCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEE-c-----------cCcEEEEeCCCCceecccc
Confidence 35899999876321 1 11222333444789988554 2 1238999998776555443
No 100
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=93.12 E-value=8.6 Score=40.19 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=28.0
Q ss_pred ceeEEeccccceEEEEeeeeeEEEEecccceeeee
Q psy1644 65 PVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYM 99 (923)
Q Consensus 65 PvamqiS~k~G~iyliTK~G~lhl~Dlet~t~iy~ 99 (923)
--++..|+.-..+..-+..|.|+|||++++.++..
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~ 160 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI 160 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 34677777767777788899999999999987643
No 101
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=92.97 E-value=16 Score=41.91 Aligned_cols=288 Identities=18% Similarity=0.271 Sum_probs=144.0
Q ss_pred CCCCceEEEEEEecCCccEEEEEecCCCCCCCCCcccceeeeecCCCccCCcceeEEeccccceEEEEeeeeeEEEEecc
Q psy1644 13 NPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYDVVYLITKFGYIHVYDIE 92 (923)
Q Consensus 13 N~~~stL~cfa~r~~~~gkLhiiEig~~~~g~~~f~kK~vd~~Fppe~~~DFPvamqiS~k~G~iyliTK~G~lhl~Dle 92 (923)
...+.+++-.+. ...+.+.+++..+... .+.+. .+..|-.+.+|..-..+|+....|.|++||+.
T Consensus 162 ~~d~~~~~~V~~--~~~~~V~viD~~t~~v------~~~i~-------~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 162 DWDLENLFSVTL--RDAGQIALIDGSTYEI------KTVLD-------TGYAVHISRLSASGRYLFVIGRDGKVNMIDLW 226 (567)
T ss_dssp CCCGGGEEEEEE--TTTTEEEEEETTTCCE------EEEEE-------CSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred ccCCCceEEEEe--CCCCeEEEEECCCCeE------EEEEe-------CCCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence 344556654443 3567899998764210 11122 24567788889888899999988999999995
Q ss_pred --cceeeeecccCCCcEEEeeccCCCcceEEEecCCcceeeeeeeceeec--ccceeEEEecccccceEEEEecCCCCCC
Q psy1644 93 --TATCIYMNRISSDTIFVTAPHEATGGIIGLTNVGINVGSVSFNTLTME--SDKFICVREKIAESAQVVIIDMNDPTNP 168 (923)
Q Consensus 93 --t~t~iy~~rIS~~~if~ta~~~~t~Gil~vn~~G~~~~si~~~t~tm~--sdk~ic~~~~~~~~~~vviid~~~~~~~ 168 (923)
|++.+-+=+ .|..|..+.|+- |. ..|++-|-.. ...+|+|||...- .+
T Consensus 227 ~~t~~~v~~i~-----------------------~G~~P~~ia~s~--~~~pDGk~l~v~n~--~~~~v~ViD~~t~-~~ 278 (567)
T 1qks_A 227 MKEPTTVAEIK-----------------------IGSEARSIETSK--MEGWEDKYAIAGAY--WPPQYVIMDGETL-EP 278 (567)
T ss_dssp SSSCCEEEEEE-----------------------CCSEEEEEEECC--STTCTTTEEEEEEE--ETTEEEEEETTTC-CE
T ss_pred CCCCcEeEEEe-----------------------cCCCCceeEEcc--ccCCCCCEEEEEEc--cCCeEEEEECCCC-cE
Confidence 766553211 133344444420 00 1345444332 2367999996442 22
Q ss_pred CccCcccc-----ccccCcccchhhhcCCCCCCCCCCcccceeeeccccccccCCcccccceeeecceEEEEEeccCCCc
Q psy1644 169 IRRPISAD-----SAIMNPASKVIALKGKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESA 243 (923)
Q Consensus 169 ~r~~~~a~-----~~im~p~~~i~al~~~~~~~~~~~~~~~~e~~~Lt~lGI~~~si~F~~lTmESDkyICVRE~~~~~~ 243 (923)
++ -|+.. ..--+|..++-++-.+ + ....|+... .+..
T Consensus 279 ~~-~i~~~~~~~~~~~~~p~~rva~i~~s------------------------~----------~~~~~vv~~---~~~g 320 (567)
T 1qks_A 279 KK-IQSTRGMTYDEQEYHPEPRVAAILAS------------------------H----------YRPEFIVNV---KETG 320 (567)
T ss_dssp EE-EEECCEECTTTCCEESCCCEEEEEEC------------------------S----------SSSEEEEEE---TTTT
T ss_pred EE-EEeccccccccccccCCCceEEEEEc------------------------C----------CCCEEEEEe---cCCC
Confidence 21 11111 0001111111111110 0 011222211 3455
Q ss_pred eEEEEECCCCCCCcccccCcc----ccccCCCccEE--EEeccCCCCCCCCCCCeEEEEecccccccccccC----CCc-
Q psy1644 244 QVVIIDMNDPTNPIRRPISAD----SAIMNPASKVI--ALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM----TDD- 312 (923)
Q Consensus 244 qVvIVDL~n~~~v~Rrpi~AD----SAIMnP~~~II--ALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m----~E~- 312 (923)
+|.+||..+..+.....|.+. ..-..|+.+-+ |.. ....|.++|+++.+.++.... +.+
T Consensus 321 ~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~----------~sn~V~ViD~~t~kl~~~i~vgg~~Phpg 390 (567)
T 1qks_A 321 KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN----------ARNKLVVIDTKEGKLVAIEDTGGQTPHPG 390 (567)
T ss_dssp EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG----------GGTEEEEEETTTTEEEEEEECSSSSBCCT
T ss_pred eEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC----------CCCeEEEEECCCCcEEEEEeccCcCCCCc
Confidence 999999988754333333332 23467876643 444 346899999998765554433 211
Q ss_pred -eeEEEeccCC-eEEEEec----CeEEEEeccCCCCc---hhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeeccccccc
Q psy1644 313 -VVFWKWISPN-TLALVTE----TSVYHWSMEGDSTP---EKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVV 383 (923)
Q Consensus 313 -VvfWkWis~~-tLglVT~----taVYHWsi~g~s~P---~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~ 383 (923)
-. .|.+++ .-..+|. ..|-.|+.+....| -|+-.+-.-. +.-=.--++.++.+|+.+---...+..+.
T Consensus 391 ~g~--~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-g~g~~~i~~~p~~~~l~v~~~~~~~~~~~ 467 (567)
T 1qks_A 391 RGA--NFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-GGGSLFIKTHPNSQYLYVDATLNPEAEIS 467 (567)
T ss_dssp TCE--EEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-CSCCCCEECCTTCSEEEEECTTCSSHHHH
T ss_pred cce--eeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-CCCCEEEEeCCCCCeEEEecCCCCCcccC
Confidence 11 234543 3334442 45666665432112 2222222111 11101123678888876533222233467
Q ss_pred ceeeecccccc
Q psy1644 384 GAMQLYSVERK 394 (923)
Q Consensus 384 G~mQLYS~er~ 394 (923)
+++++|.++..
T Consensus 468 ~~v~v~d~~~~ 478 (567)
T 1qks_A 468 GSVAVFDIKAM 478 (567)
T ss_dssp TCEEEEEGGGC
T ss_pred ceEEEEECCcc
Confidence 89999988744
No 102
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=92.86 E-value=6.6 Score=37.23 Aligned_cols=134 Identities=7% Similarity=0.073 Sum_probs=72.8
Q ss_pred eEEEEEeccCCCceEEEEECCCCCCC-cccccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccc-cccc-c
Q psy1644 231 KFICVREKIAESAQVVIIDMNDPTNP-IRRPISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKS-KMKA-H 307 (923)
Q Consensus 231 kyICVRE~~~~~~qVvIVDL~n~~~v-~Rrpi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~-KLKs-~ 307 (923)
..++.....++..+|..+|+...... ...+-..-+...+|..+.|+.-+. ....++||+++... +.+. .
T Consensus 98 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~--------~~~~~~l~~~~~~~~~~~~~~ 169 (297)
T 2ojh_A 98 LYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGI--------RDQVFDIYSMDIDSGVETRLT 169 (297)
T ss_dssp EEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEE--------ETTEEEEEEEETTTCCEEECC
T ss_pred EEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEEC--------CCCceEEEEEECCCCcceEcc
Confidence 34444433334568888887654311 111111223457888887775421 23468888865432 2222 2
Q ss_pred cCCCceeEEEeccCCe-EEEEec--CeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeee
Q psy1644 308 PMTDDVVFWKWISPNT-LALVTE--TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGIS 376 (923)
Q Consensus 308 ~m~E~VvfWkWis~~t-LglVT~--taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~ 376 (923)
.....+.-..|-.+.. |+..+. ..+..|.+.-+....+.+..+ ...+.....++++++++..+-.
T Consensus 170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS----AYGDWFPHPSPSGDKVVFVSYD 237 (297)
T ss_dssp CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC----SEEEEEEEECTTSSEEEEEEEE
T ss_pred cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC----CcccCCeEECCCCCEEEEEEcC
Confidence 2345677788875554 666553 355566554222222333322 2456677788999998887754
No 103
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=92.64 E-value=12 Score=41.87 Aligned_cols=151 Identities=11% Similarity=0.087 Sum_probs=79.1
Q ss_pred cceeeecc-eEEEEEecc--CCCceEEEEECCCCCCCccc---ccC-----ccccccCC--CccEEEEeccCCCCCCCCC
Q psy1644 223 NTLTMESD-KFICVREKI--AESAQVVIIDMNDPTNPIRR---PIS-----ADSAIMNP--ASKVIALKGKAGNDNNPNA 289 (923)
Q Consensus 223 ~~lTmESD-kyICVRE~~--~~~~qVvIVDL~n~~~v~Rr---pi~-----ADSAIMnP--~~~IIALra~~~~~n~~~~ 289 (923)
.++.+..| +++.+-... .....|.++|+........- .-. ..+...+| ..++++.-. .
T Consensus 261 ~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~---------~ 331 (706)
T 2z3z_A 261 TNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSR---------R 331 (706)
T ss_dssp EEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEEC---------T
T ss_pred eeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEc---------c
Confidence 34555444 455553322 23348999998876322110 001 13456788 888777651 2
Q ss_pred CCeEEEEeccc-ccccccccCCC-ceeE-EEeccCC-eEEEEecC------eEEEEeccCCCCchhhhhcccCCCCCeeE
Q psy1644 290 PKTLQIFNIEM-KSKMKAHPMTD-DVVF-WKWISPN-TLALVTET------SVYHWSMEGDSTPEKMFDRHSTLNGCQII 359 (923)
Q Consensus 290 g~~LQIFNle~-K~KLKs~~m~E-~Vvf-WkWis~~-tLglVT~t------aVYHWsi~g~s~P~K~FdR~~~L~~~QII 359 (923)
....+||.++. ..+++..+-.+ ++.- -.|-.+. .|...... .||.|++++.. +..+. ....+.
T Consensus 332 ~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~------~~~~~~ 404 (706)
T 2z3z_A 332 DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT------PESGMH 404 (706)
T ss_dssp TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC------CSSSEE
T ss_pred CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc------CCCceE
Confidence 24577887763 23333333222 2322 2454333 46555432 78888886532 33332 123466
Q ss_pred eeeeCCCCCeEEEEeeecccccccceeeecccc
Q psy1644 360 NYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVE 392 (923)
Q Consensus 360 nYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~e 392 (923)
....++|+++++..+-+. ...+.+.+|+.+
T Consensus 405 ~~~~spdg~~l~~~~~~~---~~p~~i~l~d~~ 434 (706)
T 2z3z_A 405 RTQLSPDGSAIIDIFQSP---TVPRKVTVTNIG 434 (706)
T ss_dssp EEEECTTSSEEEEEEECS---SCSCEEEEEESS
T ss_pred EEEECCCCCEEEEEecCC---CCCcEEEEEECC
Confidence 778899999987765432 223445555544
No 104
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=92.53 E-value=12 Score=39.48 Aligned_cols=90 Identities=9% Similarity=0.126 Sum_probs=55.6
Q ss_pred CCeEEEEecccccccccccC-CCceeEEEeccC-CeEEEEec-CeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCC
Q psy1644 290 PKTLQIFNIEMKSKMKAHPM-TDDVVFWKWISP-NTLALVTE-TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPK 366 (923)
Q Consensus 290 g~~LQIFNle~K~KLKs~~m-~E~VvfWkWis~-~tLglVT~-taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~ 366 (923)
..++.+||+.+...++.+.- ...|.--.|-.. +.|+-... ..|+.|++... .+.+.+..|. ..|..-..+++
T Consensus 317 D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~~h~----~~v~~l~~~~~ 391 (410)
T 1vyh_C 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLNAHE----HFVTSLDFHKT 391 (410)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEECCS----SCEEEEEECSS
T ss_pred CCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEcCCC----CcEEEEEEcCC
Confidence 46899999998887776554 334444455433 34444433 46999998532 3444454443 35777777888
Q ss_pred CCeEEEEeeecccccccceeeeccc
Q psy1644 367 QTWLLLIGISAVSNRVVGAMQLYSV 391 (923)
Q Consensus 367 ~kW~~LvGI~~~~~~i~G~mQLYS~ 391 (923)
.++++-.| .+|.+.+|..
T Consensus 392 ~~~l~sgs-------~D~~i~vW~~ 409 (410)
T 1vyh_C 392 APYVVTGS-------VDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEE-------TTSEEEEEC-
T ss_pred CCEEEEEe-------CCCcEEEEeC
Confidence 88765433 4677777753
No 105
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=92.46 E-value=12 Score=39.13 Aligned_cols=128 Identities=14% Similarity=0.045 Sum_probs=70.9
Q ss_pred eEEEEECCCCCCCcccccC-----ccccccCCC-ccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC-CCceeEE
Q psy1644 244 QVVIIDMNDPTNPIRRPIS-----ADSAIMNPA-SKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM-TDDVVFW 316 (923)
Q Consensus 244 qVvIVDL~n~~~v~Rrpi~-----ADSAIMnP~-~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m-~E~VvfW 316 (923)
.|.+.|+..+....+.... .-+...+|. .+++|.=+ ...+++|||+++.+.++.+.- ...|.-=
T Consensus 193 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~---------~dg~v~~wd~~~~~~~~~~~~h~~~v~~v 263 (344)
T 4gqb_B 193 RILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD---------ENGTVSLVDTKSTSCVLSSAVHSQCVTGL 263 (344)
T ss_dssp CEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE---------TTSEEEEEESCC--CCEEEECCSSCEEEE
T ss_pred ccccccccccceeeeeecceeeccceeeeecCCCCcceEEec---------cCCcEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 5666666655433221111 224556775 46666531 236899999999888877664 4455555
Q ss_pred EeccCC--eEEEEe-cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecccc
Q psy1644 317 KWISPN--TLALVT-ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVE 392 (923)
Q Consensus 317 kWis~~--tLglVT-~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~e 392 (923)
.|-.+. .|+-.. +..|+.|++.... .. .+.-|. ..|..-.-++++++++..|= -+|.+-+|.++
T Consensus 264 ~fsp~g~~~lasgs~D~~i~vwd~~~~~-~~-~~~~H~----~~V~~v~~sp~~~~llas~s------~D~~v~~w~v~ 330 (344)
T 4gqb_B 264 VFSPHSVPFLASLSEDCSLAVLDSSLSE-LF-RSQAHR----DFVRDATWSPLNHSLLTTVG------WDHQVVHHVVP 330 (344)
T ss_dssp EECSSSSCCEEEEETTSCEEEECTTCCE-EE-EECCCS----SCEEEEEECSSSTTEEEEEE------TTSCEEEEECC
T ss_pred EEccCCCeEEEEEeCCCeEEEEECCCCc-EE-EEcCCC----CCEEEEEEeCCCCeEEEEEc------CCCeEEEEECC
Confidence 665332 344443 3589999885331 11 122221 24666666778887665441 35677788764
No 106
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=92.32 E-value=17 Score=40.67 Aligned_cols=108 Identities=18% Similarity=0.215 Sum_probs=68.0
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCC----CceeEEEeccCCeEEEE-ecCeEEEEeccC
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMT----DDVVFWKWISPNTLALV-TETSVYHWSMEG 339 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~----E~VvfWkWis~~tLglV-T~taVYHWsi~g 339 (923)
+.-.+|..+.||-=+ .-+++.+||+++.+.++.+... ..+.--.| +.+.++-. .+..+..|+.+.
T Consensus 244 ~v~~spdg~~l~s~s---------~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~i~~~~~~~ 313 (611)
T 1nr0_A 244 GLTWSPDGTKIASAS---------ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFINFVNPEL 313 (611)
T ss_dssp EEEECTTSSEEEEEE---------TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE-CSSCEEEEETTCCEEEEETTT
T ss_pred EEEECCCCCEEEEEe---------CCCeEEEEeCCCCceeeeecCCCCccceeEEEEE-cCCEEEEEeCCCcEEEEeCCC
Confidence 345678777776542 3468999999988777765542 22333445 44444444 455788998754
Q ss_pred CCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecccccc
Q psy1644 340 DSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERK 394 (923)
Q Consensus 340 ~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~ 394 (923)
.. +.+.+.-| ...|..-..++++++++-.| -+|.+.+|.++.+
T Consensus 314 ~~-~~~~~~gh----~~~v~~l~~spdg~~l~s~s-------~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 314 GS-IDQVRYGH----NKAITALSSSADGKTLFSAD-------AEGHINSWDISTG 356 (611)
T ss_dssp TE-EEEEECCC----SSCEEEEEECTTSSEEEEEE-------TTSCEEEEETTTC
T ss_pred CC-cceEEcCC----CCCEEEEEEeCCCCEEEEEe-------CCCcEEEEECCCC
Confidence 32 33333333 23577777888999886554 3578888887654
No 107
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=92.14 E-value=11 Score=39.83 Aligned_cols=51 Identities=6% Similarity=0.231 Sum_probs=31.3
Q ss_pred CCeEEEEeccccc---------ccccccC-CCceeEEEeccCCeEEEEe-cCeEEEEeccCCC
Q psy1644 290 PKTLQIFNIEMKS---------KMKAHPM-TDDVVFWKWISPNTLALVT-ETSVYHWSMEGDS 341 (923)
Q Consensus 290 g~~LQIFNle~K~---------KLKs~~m-~E~VvfWkWis~~tLglVT-~taVYHWsi~g~s 341 (923)
...+.|||+++.. .+....- ...|.-..| +.+.|+-.+ +..|..|++.++.
T Consensus 355 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 355 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-CSSCEEECCSSSEEEEEC-----
T ss_pred CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe-CCCEEEEEeCCCEEEEEECCCCC
Confidence 4689999998776 3333222 345555566 788877666 4589999997654
No 108
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=92.00 E-value=10 Score=39.43 Aligned_cols=88 Identities=14% Similarity=0.220 Sum_probs=53.9
Q ss_pred ceEEEEECCCCCCCccccc-----CccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC--CCceeE
Q psy1644 243 AQVVIIDMNDPTNPIRRPI-----SADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM--TDDVVF 315 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrpi-----~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m--~E~Vvf 315 (923)
..|.+.|+.....+.+-.. ..-+...+|..+.+|.=+ ...++.+||+++.+.++.+.+ ..+|.-
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 262 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT---------TRGIIDIWDIRFNVLIRSWSFGDHAPITH 262 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE---------TTSCEEEEETTTTEEEEEEBCTTCEEEEE
T ss_pred CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc---------CCCeEEEEEcCCccEEEEEecCCCCceEE
Confidence 4778888876543322111 122455788888777652 346899999999888887654 334544
Q ss_pred EEecc---CCeEEEEec---CeEEEEeccC
Q psy1644 316 WKWIS---PNTLALVTE---TSVYHWSMEG 339 (923)
Q Consensus 316 WkWis---~~tLglVT~---taVYHWsi~g 339 (923)
-.|-. ++.--|++. ..|..|++..
T Consensus 263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp EEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred EEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 44432 344344443 3599999953
No 109
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=92.00 E-value=9.5 Score=39.29 Aligned_cols=36 Identities=11% Similarity=-0.009 Sum_probs=29.5
Q ss_pred CCcceeEEeccccceEEEEe-eeeeEEEEecccceeee
Q psy1644 62 NDFPVAMQVSAKYDVVYLIT-KFGYIHVYDIETATCIY 98 (923)
Q Consensus 62 ~DFPvamqiS~k~G~iyliT-K~G~lhl~Dlet~t~iy 98 (923)
...|-+|-++.. |-+|+.+ -.|.|+++|.+|++.+-
T Consensus 83 ~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 83 FTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp CSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred CCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCCeEEE
Confidence 467888988765 6899988 67899999999998664
No 110
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=91.65 E-value=16 Score=39.04 Aligned_cols=56 Identities=11% Similarity=0.149 Sum_probs=40.7
Q ss_pred CceEEEEECCCCCCCcccccC--ccccccCCCcc-EE-EEeccCCCCCCCCCCCeEEEEeccccccccc
Q psy1644 242 SAQVVIIDMNDPTNPIRRPIS--ADSAIMNPASK-VI-ALKGKAGNDNNPNAPKTLQIFNIEMKSKMKA 306 (923)
Q Consensus 242 ~~qVvIVDL~n~~~v~Rrpi~--ADSAIMnP~~~-II-ALra~~~~~n~~~~g~~LQIFNle~K~KLKs 306 (923)
.+.|.+||++....+.+-|.. ..+....|..+ .+ +... ....|-|||+++.+.++.
T Consensus 297 ~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~---------~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 297 AKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA---------GTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcC---------CCCeEEEEECCCCCEEee
Confidence 468999999877655555554 56777888876 33 3331 246899999999988888
No 111
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=91.63 E-value=3.7 Score=42.74 Aligned_cols=71 Identities=15% Similarity=0.291 Sum_probs=49.8
Q ss_pred cEEEEEecCCCCCCCCC--c-ccceeeeecCCCccCCcceeEE--eccccceEEEEeeeeeEEEEecccceeeeec
Q psy1644 30 GKLHIIEVGTPPAGNTP--L-AKKAVDVFFPPEAANDFPVAMQ--VSAKYDVVYLITKFGYIHVYDIETATCIYMN 100 (923)
Q Consensus 30 gkLhiiEig~~~~g~~~--f-~kK~vd~~Fppe~~~DFPvamq--iS~k~G~iyliTK~G~lhl~Dlet~t~iy~~ 100 (923)
|.+++-++.....|... + .+..-.+.|.|+..+++.++|. .++....+...+..|.|++||+.++.++..-
T Consensus 133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQII 208 (437)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEE
Confidence 57888777421111111 1 1234467777876788888888 6677788999999999999999999886653
No 112
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=90.78 E-value=9.8 Score=40.64 Aligned_cols=144 Identities=12% Similarity=0.093 Sum_probs=85.7
Q ss_pred cceEEEEEeccCCC--ceEEEEECCCCCCCcc---cccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccc
Q psy1644 229 SDKFICVREKIAES--AQVVIIDMNDPTNPIR---RPISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSK 303 (923)
Q Consensus 229 SDkyICVRE~~~~~--~qVvIVDL~n~~~v~R---rpi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~K 303 (923)
+.+.+.+.+..++. .+|.++|+.... +.+ .+-..-+...+|..+.||.-+. ++ ....|.+||+++.+.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spdg~~la~~s~---~~---~~~~i~~~d~~tg~~ 215 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTF---ES---GRSALVIQTLANGAV 215 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEEC---TT---SSCEEEEEETTTCCE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCCcceeeEEcCCCCEEEEEEe---cC---CCcEEEEEECCCCcE
Confidence 34566666654332 689999986432 211 1112234567888887776521 11 135899999998765
Q ss_pred cccccCCCceeEEEeccCC-eEEEEe----cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecc
Q psy1644 304 MKAHPMTDDVVFWKWISPN-TLALVT----ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAV 378 (923)
Q Consensus 304 LKs~~m~E~VvfWkWis~~-tLglVT----~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~ 378 (923)
..-......+.--.|-.+. .|+++. ...||.|++.+.. +.. +..|. ..+....-++|++|++..+-.
T Consensus 216 ~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-~~~-l~~~~----~~~~~~~~spdg~~l~~~s~~-- 287 (415)
T 2hqs_A 216 RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQ-VTDGR----SNNTEPTWFPDSQNLAFTSDQ-- 287 (415)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEE-CCCCS----SCEEEEEECTTSSEEEEEECT--
T ss_pred EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-EEe-CcCCC----CcccceEECCCCCEEEEEECC--
Confidence 4433345566677787554 477665 3469999996532 222 22222 356677789999998876521
Q ss_pred cccccceeeeccc
Q psy1644 379 SNRVVGAMQLYSV 391 (923)
Q Consensus 379 ~~~i~G~mQLYS~ 391 (923)
.|..|||..
T Consensus 288 ----~g~~~i~~~ 296 (415)
T 2hqs_A 288 ----AGRPQVYKV 296 (415)
T ss_dssp ----TSSCEEEEE
T ss_pred ----CCCcEEEEE
Confidence 245567643
No 113
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=90.76 E-value=6.5 Score=40.17 Aligned_cols=63 Identities=6% Similarity=0.073 Sum_probs=40.0
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC-CCceeEEEeccCC-eEEEEe-cCeEEEEe
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM-TDDVVFWKWISPN-TLALVT-ETSVYHWS 336 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m-~E~VvfWkWis~~-tLglVT-~taVYHWs 336 (923)
+.-.+|..+.+|.=+ ....+.+||+.+...+..+.- ...|.--.|-.+. .|+-.. +..|..|+
T Consensus 275 ~~~~s~~g~~l~~g~---------~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 275 SVSFSKSGRLLLAGY---------DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECTTSSEEEEEE---------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEECCCCCEEEEEC---------CCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 455788888887752 346899999988877665443 3456666665443 343333 23677774
No 114
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=90.12 E-value=21 Score=37.71 Aligned_cols=118 Identities=12% Similarity=0.166 Sum_probs=60.2
Q ss_pred ccccCCCcc-EEEEeccCCCCCCCCCCCeEEEEecccccccccccC----CCceeEEEeccC-CeEEEEec-CeEEEEec
Q psy1644 265 SAIMNPASK-VIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM----TDDVVFWKWISP-NTLALVTE-TSVYHWSM 337 (923)
Q Consensus 265 SAIMnP~~~-IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m----~E~VvfWkWis~-~tLglVT~-taVYHWsi 337 (923)
+.-.||..+ ++|.=+ ...++.|||+.+......+.. ...|.-=.|-.+ +.|+-.+. ..|..|++
T Consensus 255 ~v~~~p~~~~~~~s~s---------~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~ 325 (435)
T 4e54_B 255 HVALNPCCDWFLATAS---------VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA 325 (435)
T ss_dssp EEEECTTCSSEEEEEE---------TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEES
T ss_pred eeeecCCCceEEEEec---------CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEEC
Confidence 344677754 555432 346899999987665444322 345555455433 34444433 47999999
Q ss_pred cCCCCchhhhhcccCC--CCCeeEeeeeCCCCCeEEEEeeecccc------cccceeeeccccc
Q psy1644 338 EGDSTPEKMFDRHSTL--NGCQIINYRTDPKQTWLLLIGISAVSN------RVVGAMQLYSVER 393 (923)
Q Consensus 338 ~g~s~P~K~FdR~~~L--~~~QIInYr~d~~~kW~~LvGI~~~~~------~i~G~mQLYS~er 393 (923)
.....|..+. .|..- ....++....+++...+ ++|.+.... .-.+.+++|..+.
T Consensus 326 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~i~iwd~~~ 387 (435)
T 4e54_B 326 SQWDCPLGLI-PHPHRHFQHLTPIKAAWHPRYNLI-VVGRYPDPNFKSCTPYELRTIDVFDGNS 387 (435)
T ss_dssp SSSSSEEEEC-CCCCCCCSSSCCCBCEECSSSSCE-EEECCCCTTSCCSSTTCCCCEEEECSSS
T ss_pred CCCccceEEe-cccccccccceeEEEEEcCCCCEE-EEEEcCCCCeEEEEecCCCEEEEEECCC
Confidence 7554444332 22211 11223333344554444 344443222 1224678887654
No 115
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=89.68 E-value=8.2 Score=39.22 Aligned_cols=155 Identities=8% Similarity=0.112 Sum_probs=89.3
Q ss_pred eeeccccccccCCcccccceeeecc-eEEEEEeccCCCceEEEEECCCCCCCcccccCcc---ccccCCCccEEEEeccC
Q psy1644 206 RIYLLTNVGINVGSVSFNTLTMESD-KFICVREKIAESAQVVIIDMNDPTNPIRRPISAD---SAIMNPASKVIALKGKA 281 (923)
Q Consensus 206 e~~~Lt~lGI~~~si~F~~lTmESD-kyICVRE~~~~~~qVvIVDL~n~~~v~Rrpi~AD---SAIMnP~~~IIALra~~ 281 (923)
++.+|+.-+....+.-|.+..+..| ++|..-...++..+|.++|+........-+-..+ +....|..+.||.-.
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~-- 99 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK-- 99 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE--
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe--
Confidence 4456666554444444555666543 3444333334456899999986542111111111 456889988777752
Q ss_pred CCCCCCCCCCeEEEEecccccccccccCCCcee-EEEec-cCC--eEEEE-----------------------ecCeEEE
Q psy1644 282 GNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVV-FWKWI-SPN--TLALV-----------------------TETSVYH 334 (923)
Q Consensus 282 ~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~Vv-fWkWi-s~~--tLglV-----------------------T~taVYH 334 (923)
.+..|.++|+++.+...-...++..+ .-.|+ +++ .++-+ ....+|.
T Consensus 100 -------~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 100 -------DGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp -------TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred -------CCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 34689999999987666666655533 33453 333 23221 1257899
Q ss_pred EeccCCCCchhhhhcccCCCCCeeEeeeeCC-CCCeEEEEee
Q psy1644 335 WSMEGDSTPEKMFDRHSTLNGCQIINYRTDP-KQTWLLLIGI 375 (923)
Q Consensus 335 Wsi~g~s~P~K~FdR~~~L~~~QIInYr~d~-~~kW~~LvGI 375 (923)
|++.+. .+..++.- ...+.....++ |++|++.+.-
T Consensus 173 ~d~~~g-~~~~l~~~-----~~~~~~~~~sp~dg~~l~~~~~ 208 (388)
T 3pe7_A 173 VDLKTG-ESTVILQE-----NQWLGHPIYRPYDDSTVAFCHE 208 (388)
T ss_dssp EETTTC-CEEEEEEE-----SSCEEEEEEETTEEEEEEEEEC
T ss_pred EECCCC-ceEEeecC-----CccccccEECCCCCCEEEEEEe
Confidence 998653 34444432 12456677888 8999877763
No 116
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=89.35 E-value=22 Score=36.87 Aligned_cols=67 Identities=10% Similarity=0.147 Sum_probs=42.2
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccccccccc-----CCCceeEEEeccCCeEEEEec---CeEEEEe
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHP-----MTDDVVFWKWISPNTLALVTE---TSVYHWS 336 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~-----m~E~VvfWkWis~~tLglVT~---taVYHWs 336 (923)
+...+|..+.+|.=+ ....+.|||+.+.+.+.... -...|.--.|-.+.. -|+|. ..|..|+
T Consensus 303 ~~~~s~~g~~l~~g~---------~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 303 SVAFSISGRLLFAGY---------SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGS-ALCTGSWDKNLKIWA 372 (380)
T ss_dssp EEEECSSSSEEEEEC---------TTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSS-EEEEECTTSCEEEEE
T ss_pred EEEECCCCCEEEEEE---------CCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCC-EEEEeeCCCCEEEEe
Confidence 566789988887742 34689999998776554331 123454455544333 35553 4899999
Q ss_pred ccCCC
Q psy1644 337 MEGDS 341 (923)
Q Consensus 337 i~g~s 341 (923)
+.+..
T Consensus 373 ~~~~~ 377 (380)
T 3iz6_a 373 FSGHR 377 (380)
T ss_dssp CCSSS
T ss_pred cCCCc
Confidence 87653
No 117
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.34 E-value=3.3 Score=51.14 Aligned_cols=101 Identities=23% Similarity=0.268 Sum_probs=72.0
Q ss_pred EEEEecCCccEEEEEecCCCCCCCCCcccceeeeecCCCccCCcceeEEeccccce--EEEEeeeeeEEEEeccc-----
Q psy1644 21 CFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYDV--VYLITKFGYIHVYDIET----- 93 (923)
Q Consensus 21 cfa~r~~~~gkLhiiEig~~~~g~~~f~kK~vd~~Fppe~~~DFPvamqiS~k~G~--iyliTK~G~lhl~Dlet----- 93 (923)
+|-||-.+-|.|.|..+.-.. +..+-..+.+-+.||..... .+|+.-.++.|+. ||+||+.|.+|-..+..
T Consensus 75 ~~~wrv~~~~~l~~~~~~~~~-~~~~~~~~ti~~~Fp~~i~p-~~v~~~~~~~~~~L~v~vit~~~~ly~l~l~~~~f~~ 152 (1139)
T 4fhn_B 75 TLRWSIFQNRTLTIFDVSLNS-KKEPLSKFNVKIHFPSNVMK-DGVAFSFSEHSDTTIIYAITHARVLYYIRLSKTWFQL 152 (1139)
T ss_dssp CEEEEEEETTEEEEECCCCCC-SSSSSCCEEEEEECSSCSCS-SSCSCEEEESSSEEEEEEECSSSCEEEEEEEHHHHHC
T ss_pred ceEEEEecCCeEEEEEEeccC-CCcccCCeEEEEECCCcccC-CceEEeecCCCCeEEEEEEcCCCcEEEEEeCHHHhcC
Confidence 366777655789898886433 35566778999999777765 6889888888886 58999999998776321
Q ss_pred --------------------ceeeeecccCCCcEEEeeccCCCcceEEEecCC
Q psy1644 94 --------------------ATCIYMNRISSDTIFVTAPHEATGGIIGLTNVG 126 (923)
Q Consensus 94 --------------------~t~iy~~rIS~~~if~ta~~~~t~Gil~vn~~G 126 (923)
..|-++.-+|++.++++. ..||+|.+.+.+
T Consensus 153 ~~~~~~~~W~k~~~P~~f~~r~Ph~L~avs~~~lvVsL---~DGgLLrL~r~~ 202 (1139)
T 4fhn_B 153 PDARLDDDWCLCYRPISFLNQKPDLMAAISTSEICVSF---FNGGLTKIILNP 202 (1139)
T ss_dssp CCCCCCSCCBCCBCCSCTTTSCEEEEEECCSSEEEEEE---TTSCEEEEEEET
T ss_pred ccCcCCcccceeccCCCccCCCceEEEEEcCCcEEEEE---CCCCEEEEEecC
Confidence 123556667777777766 237788776654
No 118
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=89.29 E-value=24 Score=37.09 Aligned_cols=62 Identities=8% Similarity=0.151 Sum_probs=44.1
Q ss_pred cEEEEEecCCCCCCCCCcccceeeeecCCCc--cCCcceeEEeccccceEEEEee--eeeEEEEecccceeeee
Q psy1644 30 GKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA--ANDFPVAMQVSAKYDVVYLITK--FGYIHVYDIETATCIYM 99 (923)
Q Consensus 30 gkLhiiEig~~~~g~~~f~kK~vd~~Fppe~--~~DFPvamqiS~k~G~iyliTK--~G~lhl~Dlet~t~iy~ 99 (923)
+.+.++++.+. +..-.+..++.. .+.+|-.|.+|+.-..+|+-.- .+.|.+||++++..+-.
T Consensus 81 ~~v~v~d~~t~--------~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 81 DVVEVWDADKL--------TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp EEEEEEETTTC--------CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred CEEEEEECcCC--------cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 45777765431 222334444433 2678999999999999999864 48999999999988754
No 119
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=89.19 E-value=18 Score=35.55 Aligned_cols=65 Identities=14% Similarity=0.186 Sum_probs=41.1
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccccccccc----------CCCceeEEEeccCC-eEEEEec-CeE
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHP----------MTDDVVFWKWISPN-TLALVTE-TSV 332 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~----------m~E~VvfWkWis~~-tLglVT~-taV 332 (923)
+...+|...+++-= ....+.|||++++..+.... -...|.--.|-.+. .|+-... ..|
T Consensus 261 ~~~~~~~~~~~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v 330 (340)
T 4aow_A 261 ALCFSPNRYWLCAA----------TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLV 330 (340)
T ss_dssp EEEECSSSSEEEEE----------ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeecCCCCceeecc----------CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 45567887777654 35689999999887665433 13345555665443 4443332 479
Q ss_pred EEEeccC
Q psy1644 333 YHWSMEG 339 (923)
Q Consensus 333 YHWsi~g 339 (923)
+.|++..
T Consensus 331 ~iW~~~t 337 (340)
T 4aow_A 331 RVWQVTI 337 (340)
T ss_dssp EEEEEEC
T ss_pred EEEeCCC
Confidence 9999853
No 120
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=88.81 E-value=7.3 Score=39.43 Aligned_cols=65 Identities=11% Similarity=0.091 Sum_probs=42.1
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccc----cccccC-CCceeEEEeccCC-eEEEEecCeEEEEecc
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSK----MKAHPM-TDDVVFWKWISPN-TLALVTETSVYHWSME 338 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~K----LKs~~m-~E~VvfWkWis~~-tLglVT~taVYHWsi~ 338 (923)
+...+|..+.||.=+ ....+.+||+++.+. ++...- ...|.--.|-.+. .|+--.+..+..|+..
T Consensus 210 ~~~~sp~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 210 AVGFSPSGNALAYAG---------HDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp EEEECTTSSCEEEEE---------TTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred EEEECCCCCEEEEEe---------CCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 344677777666642 346899999999887 665544 3457677777554 4555556677788764
No 121
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=88.81 E-value=29 Score=37.39 Aligned_cols=114 Identities=15% Similarity=0.213 Sum_probs=70.8
Q ss_pred ccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccccccccc-CCCceeEEEeccC-CeEEEEec-CeEEEEeccCCCCc
Q psy1644 267 IMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHP-MTDDVVFWKWISP-NTLALVTE-TSVYHWSMEGDSTP 343 (923)
Q Consensus 267 IMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~-m~E~VvfWkWis~-~tLglVT~-taVYHWsi~g~s~P 343 (923)
..+|..+.+|.=+ ...++.+||+..+. ++... ...+|.--.|-.+ +.|+-.+. ..|..|+.+| .+
T Consensus 433 ~~s~d~~~l~~~~---------~d~~v~~w~~~~~~-~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~--~~ 500 (577)
T 2ymu_A 433 AFSPDDQTIASAS---------DDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QL 500 (577)
T ss_dssp EECTTSSEEEEEE---------TTSEEEEEETTSCE-EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS--CE
T ss_pred EECCCCCEEEEEc---------CCCEEEEEECCCCE-EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--CE
Confidence 3578777777652 34689999986543 33322 2445544455433 34444443 4799999754 34
Q ss_pred hhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecccccccccccccce
Q psy1644 344 EKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERKCSQPIEEKK 403 (923)
Q Consensus 344 ~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~~SQ~iEGk~ 403 (923)
.+.|..|. ..|..-..+++++|++..| -.|.+.||+.....-+.+.|+.
T Consensus 501 ~~~~~~h~----~~v~~l~~s~dg~~l~s~~-------~dg~v~lwd~~~~~~~~~~~h~ 549 (577)
T 2ymu_A 501 LQTLTGHS----SSVRGVAFSPDGQTIASAS-------DDKTVKLWNRNGQLLQTLTGHS 549 (577)
T ss_dssp EEEEECCS----SCEEEEEECTTSSCEEEEE-------TTSEEEEECTTSCEEEEEECCS
T ss_pred EEEEeCCC----CCEEEEEEcCCCCEEEEEE-------CcCEEEEEeCCCCEEEEEcCCC
Confidence 44454443 4577777789999987554 3578999997766556666643
No 122
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=88.37 E-value=7.1 Score=45.79 Aligned_cols=119 Identities=14% Similarity=0.132 Sum_probs=64.9
Q ss_pred CCCeEEEEecccccc------cc-cccCCCceeEEEeccCCeEEEEecCeEEEEeccCCCCchhhhhcccCCCCCeeEee
Q psy1644 289 APKTLQIFNIEMKSK------MK-AHPMTDDVVFWKWISPNTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINY 361 (923)
Q Consensus 289 ~g~~LQIFNle~K~K------LK-s~~m~E~VvfWkWis~~tLglVT~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInY 361 (923)
.++++++|+++.+.- |+ .|. ..|.=-.|. .+.||......|..|++.+...-..-+. | .+....+..
T Consensus 200 ~D~tVrlWd~~~~~~~~~~~tL~~~h~--~~V~svaFs-g~~LASa~~~tIkLWd~~~~~~~~~~~g-h--~~~V~~va~ 273 (588)
T 2j04_A 200 SNNSVFSMTVSASSHQPVSRMIQNASR--RKITDLKIV-DYKVVLTCPGYVHKIDLKNYSISSLKTG-S--LENFHIIPL 273 (588)
T ss_dssp TTCCEEEECCCSSSSCCCEEEEECCCS--SCCCCEEEE-TTEEEEECSSEEEEEETTTTEEEEEECS-C--CSCCCEEEE
T ss_pred CCCeEEEEECCCCccccceeeeccccc--CcEEEEEEE-CCEEEEEeCCeEEEEECCCCeEEEEEcC-C--CceEEEEEe
Confidence 468999999988762 43 333 234333344 6899999999999999875432121111 2 222333333
Q ss_pred eeCCCCCeEEEEe-------------eecccc---cccceeeecccccccccccccce-eEEeccCCCc
Q psy1644 362 RTDPKQTWLLLIG-------------ISAVSN---RVVGAMQLYSVERKCSQPIEEKK-SRVAANAPKG 413 (923)
Q Consensus 362 r~d~~~kW~~LvG-------------I~~~~~---~i~G~mQLYS~er~~SQ~iEGk~-AkvAA~SP~g 413 (923)
--+++.+++++.+ .++... ...|.+-+|+...+.-+-+||.. ..-.|-||.|
T Consensus 274 ~~s~d~~~La~a~edG~klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG 342 (588)
T 2j04_A 274 NHEKESTILLMSNKTSYKVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDG 342 (588)
T ss_dssp TTCSSCEEEEECSSCEEEEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTS
T ss_pred eeCCCCCEEEEEcCCCCEEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCC
Confidence 1155555544433 122221 34577788887655555666621 2224446665
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=88.26 E-value=26 Score=36.21 Aligned_cols=66 Identities=21% Similarity=0.287 Sum_probs=46.7
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCe-EEEEeccccccccccc---CCCceeEEEeccC-CeEEEEec-CeEEEEecc
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKT-LQIFNIEMKSKMKAHP---MTDDVVFWKWISP-NTLALVTE-TSVYHWSME 338 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~-LQIFNle~K~KLKs~~---m~E~VvfWkWis~-~tLglVT~-taVYHWsi~ 338 (923)
+.-.+|..+.+|-=+ ..++ +.|||+++.+.+..+. ....|.--.|-.+ +.|+-.+. ..|..|++.
T Consensus 200 ~~~~s~~g~~l~s~s---------~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 200 MVRLNRKSDMVATCS---------QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp EEEECTTSSEEEEEE---------TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred EEEECCCCCEEEEEe---------CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 345678777777642 2345 9999999999888876 5667777777654 45555554 479999996
Q ss_pred C
Q psy1644 339 G 339 (923)
Q Consensus 339 g 339 (923)
.
T Consensus 271 ~ 271 (355)
T 3vu4_A 271 N 271 (355)
T ss_dssp C
T ss_pred C
Confidence 4
No 124
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=88.23 E-value=26 Score=36.27 Aligned_cols=129 Identities=12% Similarity=0.145 Sum_probs=74.2
Q ss_pred ceEEEEECCCCCCCcccccC-----ccccccCCC-ccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC-CCceeE
Q psy1644 243 AQVVIIDMNDPTNPIRRPIS-----ADSAIMNPA-SKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM-TDDVVF 315 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rrpi~-----ADSAIMnP~-~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m-~E~Vvf 315 (923)
..|.+.|+..+......+.. .-+...+|. .+++|.=+ ....+.+||+.+.+.++.+.. ...|.-
T Consensus 204 g~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~---------~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 274 (357)
T 4g56_B 204 GRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD---------ETGNVSLVNIKNPDSAQTSAVHSQNITG 274 (357)
T ss_dssp SCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE---------SSSCEEEEESSCGGGCEEECCCSSCEEE
T ss_pred CceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee---------cccceeEEECCCCcEeEEEeccceeEEE
Confidence 35777777665544333222 124456776 46676531 245799999999888887765 456777
Q ss_pred EEeccC--CeEEEEec-CeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCC-CCCeEEEEeeecccccccceeeeccc
Q psy1644 316 WKWISP--NTLALVTE-TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDP-KQTWLLLIGISAVSNRVVGAMQLYSV 391 (923)
Q Consensus 316 WkWis~--~tLglVT~-taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~-~~kW~~LvGI~~~~~~i~G~mQLYS~ 391 (923)
-.|-.+ +.|+-... ..|+.|++... .+.+.+ .|. ..|..-.-++ +++.++-.| -+|.+.+|.+
T Consensus 275 l~~sp~~~~~lasgs~D~~i~iwd~~~~-~~~~~~-~H~----~~V~~vafsP~d~~~l~s~s-------~Dg~v~iW~~ 341 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDCTVAVLDADFS-EVFRDL-SHR----DFVTGVAWSPLDHSKFTTVG-------WDHKVLHHHL 341 (357)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTSC-EEEEEC-CCS----SCEEEEEECSSSTTEEEEEE-------TTSCEEEEEC
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEECCCC-cEeEEC-CCC----CCEEEEEEeCCCCCEEEEEc-------CCCeEEEEEC
Confidence 777543 34554443 58999998642 222211 121 2344444454 455554443 4678889987
Q ss_pred cc
Q psy1644 392 ER 393 (923)
Q Consensus 392 er 393 (923)
..
T Consensus 342 ~~ 343 (357)
T 4g56_B 342 PS 343 (357)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 125
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=88.07 E-value=20 Score=34.65 Aligned_cols=31 Identities=13% Similarity=0.010 Sum_probs=22.6
Q ss_pred eeEEeccccceEEEEeeeeeEEEEeccccee
Q psy1644 66 VAMQVSAKYDVVYLITKFGYIHVYDIETATC 96 (923)
Q Consensus 66 vamqiS~k~G~iyliTK~G~lhl~Dlet~t~ 96 (923)
-+|..|+.-..+..-+..|.|+|||++++..
T Consensus 15 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 45 (351)
T 3f3f_A 15 HDVVYDFYGRHVATCSSDQHIKVFKLDKDTS 45 (351)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEEECSSSC
T ss_pred eEEEEcCCCCEEEEeeCCCeEEEEECCCCCC
Confidence 3455555555677777889999999998753
No 126
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=87.84 E-value=25 Score=36.68 Aligned_cols=65 Identities=6% Similarity=0.052 Sum_probs=43.5
Q ss_pred cccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccccccccc--CCCceeEEEeccCCeEEEEe---cCeEEEEeccCC
Q psy1644 266 AIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHP--MTDDVVFWKWISPNTLALVT---ETSVYHWSMEGD 340 (923)
Q Consensus 266 AIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~--m~E~VvfWkWis~~tLglVT---~taVYHWsi~g~ 340 (923)
.-.+|..+.||.=+ ...++.|||+++.+.++.+. -...|.==.|= ++---|+| +..|-.|+|..+
T Consensus 275 ~~~Spdg~~lasgs---------~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fS-pdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 275 MDVDMKGELAVLAS---------NDNSIALVKLKDLSMSKIFKQAHSFAITEVTIS-PDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEECTTSCEEEEEE---------TTSCEEEEETTTTEEEEEETTSSSSCEEEEEEC-TTSCEEEEEETTSEEEEEECCTT
T ss_pred EEECCCCCceEEEc---------CCCEEEEEECCCCcEEEEecCcccCCEEEEEEC-CCCCEEEEEeCCCeEEEEEcCCC
Confidence 34789999998752 34689999999988776642 24556666664 33323444 358999999543
No 127
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=87.70 E-value=23 Score=35.10 Aligned_cols=65 Identities=18% Similarity=0.254 Sum_probs=39.5
Q ss_pred ccccCCC---ccEEEEeccCCCCCCCCCCCeEEEEeccccc------ccccccCCCceeEEEeccCC-eEEEEec-CeEE
Q psy1644 265 SAIMNPA---SKVIALKGKAGNDNNPNAPKTLQIFNIEMKS------KMKAHPMTDDVVFWKWISPN-TLALVTE-TSVY 333 (923)
Q Consensus 265 SAIMnP~---~~IIALra~~~~~n~~~~g~~LQIFNle~K~------KLKs~~m~E~VvfWkWis~~-tLglVT~-taVY 333 (923)
+...+|. .+.+|.=+ ....+.|||+++.. .+........|.--.|-.+. .|+..+. ..|+
T Consensus 211 ~~~~sp~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~ 281 (379)
T 3jrp_A 211 DVAWSPTVLLRSYLASVS---------QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 281 (379)
T ss_dssp EEEECCCCSSSEEEEEEE---------TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEE
T ss_pred EEEECCCCCCCCeEEEEe---------CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEE
Confidence 4567888 77777753 34689999999853 22222234556555775444 3444433 3688
Q ss_pred EEecc
Q psy1644 334 HWSME 338 (923)
Q Consensus 334 HWsi~ 338 (923)
.|++.
T Consensus 282 iw~~~ 286 (379)
T 3jrp_A 282 LWKEN 286 (379)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 88875
No 128
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=87.11 E-value=30 Score=36.10 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=25.8
Q ss_pred eEEeccccceEEEEeeeeeEEEEecccceeeeecc
Q psy1644 67 AMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNR 101 (923)
Q Consensus 67 amqiS~k~G~iyliTK~G~lhl~Dlet~t~iy~~r 101 (923)
++..++.-..++.-+..|.|.+||++++.++..-.
T Consensus 170 ~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 204 (393)
T 1erj_A 170 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 204 (393)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence 45555555667777778999999999998875443
No 129
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=87.04 E-value=32 Score=36.04 Aligned_cols=89 Identities=11% Similarity=0.079 Sum_probs=49.2
Q ss_pred CceEEEEECCCCCCCcccc--cCccccc--cCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccc------cCCC
Q psy1644 242 SAQVVIIDMNDPTNPIRRP--ISADSAI--MNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAH------PMTD 311 (923)
Q Consensus 242 ~~qVvIVDL~n~~~v~Rrp--i~ADSAI--MnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~------~m~E 311 (923)
...|.+.|+.+......-. ..-.++| +.+..+.+|.=+ ....+.|||+++.+.++.. ....
T Consensus 338 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 408 (445)
T 2ovr_B 338 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSS---------DDGTVKLWDLKTGEFIRNLVTLESGGSGG 408 (445)
T ss_dssp TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEE---------TTSEEEEEETTTCCEEEEEEECTTGGGTC
T ss_pred CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEe---------CCCeEEEEECCCCceeeeeeccccCCCCc
Confidence 3478899987654322211 1112222 112234444431 3468999999999888776 3344
Q ss_pred ceeEEEeccCCeEEEEec-------CeEEEEeccCC
Q psy1644 312 DVVFWKWISPNTLALVTE-------TSVYHWSMEGD 340 (923)
Q Consensus 312 ~VvfWkWis~~tLglVT~-------taVYHWsi~g~ 340 (923)
.|.=-.|- ++..-+++. +.|+.|+++.+
T Consensus 409 ~v~~~~~s-~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 409 VVWRIRAS-NTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEEEC-SSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred eEEEEEec-CCEEEEEEcccCCCCccEEEEEECCCC
Confidence 45555665 444444442 24899988654
No 130
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=86.52 E-value=22 Score=41.12 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=40.1
Q ss_pred ccccCCC---ccEEEEeccCCCCCCCCCCCeEEEEeccccc-----cc-ccccCCCceeEEEeccCC-eEEEEe-cCeEE
Q psy1644 265 SAIMNPA---SKVIALKGKAGNDNNPNAPKTLQIFNIEMKS-----KM-KAHPMTDDVVFWKWISPN-TLALVT-ETSVY 333 (923)
Q Consensus 265 SAIMnP~---~~IIALra~~~~~n~~~~g~~LQIFNle~K~-----KL-Ks~~m~E~VvfWkWis~~-tLglVT-~taVY 333 (923)
+...+|. .+.+|-=+ ..+.+.+||+.+.+ .+ ........|.--.|-.+. .|+..+ +..|+
T Consensus 209 ~l~~sp~~~~~~~l~s~s---------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~ 279 (753)
T 3jro_A 209 DVAWSPTVLLRSYLASVS---------QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 279 (753)
T ss_dssp EEEECCCCSSSEEEEEEE---------SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEE
T ss_pred EEEeccCCCCCCEEEEEe---------cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEE
Confidence 4556888 67777653 34689999999864 22 222234555555675444 344333 34799
Q ss_pred EEeccC
Q psy1644 334 HWSMEG 339 (923)
Q Consensus 334 HWsi~g 339 (923)
.|++..
T Consensus 280 vwd~~~ 285 (753)
T 3jro_A 280 LWKENL 285 (753)
T ss_dssp CCBCCS
T ss_pred EEecCC
Confidence 999863
No 131
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=86.39 E-value=3.1 Score=46.92 Aligned_cols=82 Identities=13% Similarity=0.149 Sum_probs=61.9
Q ss_pred HHHHHHHhcChhHHHHHH---HHhCCCcc---HHHHHHHHHhc-CCchhhHHHHhhhcCC-CCCcCccccchhhhhhhcc
Q psy1644 466 VIQSFAETGQFQKIVLYA---KKVGYSPD---YVFLLRNVMRV-NPDQGVGFAQMLVQDD-EPLADINQSYEGLFYFLGS 537 (923)
Q Consensus 466 Vi~clae~Gqfdkiv~Y~---~~vgytpD---y~~LL~~i~~~-nP~~a~efA~~L~~~~-~pl~di~~~~egLyy~Lgs 537 (923)
+|.++|+.|+++++...- ++.|..|| |..||....+. +.+.|.++-..+...+ .|
T Consensus 111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P----------------- 173 (501)
T 4g26_A 111 GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP----------------- 173 (501)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-----------------
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----------------
Confidence 899999999999887765 46689997 88899888776 6788888777666654 22
Q ss_pred cccccCCcchhhHHHHHHHhcCChhhhHHhhhc
Q psy1644 538 IVNYSQDQEVHFKYIQAACKTGQIKEVERICRE 570 (923)
Q Consensus 538 ivn~s~d~dVhfKYIeAA~k~gq~~EvERicre 570 (923)
|....--.|.+.++.|++.|++++-++
T Consensus 174 ------d~~ty~~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 174 ------EEPELAALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 111222368999999999999888665
No 132
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=85.60 E-value=38 Score=35.47 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=45.6
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC-CCceeEEEeccC-CeEEEEec-CeEEEEeccCCC
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM-TDDVVFWKWISP-NTLALVTE-TSVYHWSMEGDS 341 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m-~E~VvfWkWis~-~tLglVT~-taVYHWsi~g~s 341 (923)
+.+.+|..+-++.=+- .....|.|||+++.++++.+.- ...|..-.|-.+ +.|+=... ..|..|++.. .
T Consensus 325 ~~~~~~~~~~lv~~sg-------~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~-~ 396 (420)
T 4gga_A 325 SILWSPHYKELISGHG-------FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE-L 396 (420)
T ss_dssp EEEEETTTTEEEEEEC-------TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC-S
T ss_pred eeeecCCCCeEEEEEe-------cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC-C
Confidence 4556677665554310 0235799999999988877653 456777788644 34444433 4799999953 2
Q ss_pred Cchhhhhccc
Q psy1644 342 TPEKMFDRHS 351 (923)
Q Consensus 342 ~P~K~FdR~~ 351 (923)
.|.+-.+|+.
T Consensus 397 ~~~~~~~~~~ 406 (420)
T 4gga_A 397 DPARRREREK 406 (420)
T ss_dssp SCC-------
T ss_pred Cccchhhhcc
Confidence 3555555554
No 133
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=85.18 E-value=52 Score=36.66 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=46.7
Q ss_pred ccEEEEEecCCCCCCCCCcccceeeeecC--CCc-cCCcceeEEeccccceEEEEee--eeeEEEEecccceeeeeccc
Q psy1644 29 GGKLHIIEVGTPPAGNTPLAKKAVDVFFP--PEA-ANDFPVAMQVSAKYDVVYLITK--FGYIHVYDIETATCIYMNRI 102 (923)
Q Consensus 29 ~gkLhiiEig~~~~g~~~f~kK~vd~~Fp--pe~-~~DFPvamqiS~k~G~iyliTK--~G~lhl~Dlet~t~iy~~rI 102 (923)
++.+.+++..+. +..-.+..| +.+ .++.|-.|.+|...+.+|+-.- .+.|.++|+.|++.+-+=.+
T Consensus 148 ~~~VsviD~~t~--------~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v 218 (426)
T 3c75_H 148 TDYVEVFDPVTF--------LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV 218 (426)
T ss_dssp EEEEEEECTTTC--------CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEECCCC--------cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence 457888876542 222234444 222 2678999999999999999763 57899999999998765433
No 134
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=85.18 E-value=1.4 Score=45.59 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=44.8
Q ss_pred ccEEEEEeccceEEEEecCCcceeeeecccCCceEEeeccCCCCcEEEEcCCCeEEEE
Q psy1644 734 YDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSV 791 (923)
Q Consensus 734 yGvIyvITK~GflhlyDleTgt~Iy~nRIS~dtIFvta~~~~t~Gii~VNrkGqVL~V 791 (923)
-|.||+.|..|.||.+|.+||+.+.+.++....+. +.+....+.++..+++|.|..+
T Consensus 318 ~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~-~~~~~~~~~l~v~~~~G~l~~~ 374 (376)
T 3q7m_A 318 NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQ-TEPVAADGKLLIQAKDGTVYSI 374 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBC-SCCEEETTEEEEEBTTSCEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcce-eCCEEECCEEEEEeCCCEEEEE
Confidence 48899999999999999999999999988655554 3333345677778888888765
No 135
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=84.64 E-value=30 Score=33.52 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=50.8
Q ss_pred eEEEEECCCCCCCcccc--cCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC-CCceeEEEecc
Q psy1644 244 QVVIIDMNDPTNPIRRP--ISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM-TDDVVFWKWIS 320 (923)
Q Consensus 244 qVvIVDL~n~~~v~Rrp--i~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m-~E~VvfWkWis 320 (923)
.|-+.|........... ...-+...+|..+-+++=+. .....+.|||+++.++++.+.- ...|.--.|-.
T Consensus 222 ~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg-------~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp 294 (318)
T 4ggc_A 222 HIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG-------FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 294 (318)
T ss_dssp EEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEEC-------TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred EEEEEecccccccccccceeeeeeeeecccccceEEEEE-------cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 45555655544322221 12234556676655554310 0235799999999998887654 45666667754
Q ss_pred CC-eEEEEec-CeEEEEecc
Q psy1644 321 PN-TLALVTE-TSVYHWSME 338 (923)
Q Consensus 321 ~~-tLglVT~-taVYHWsi~ 338 (923)
+. .|+=... ..|..|++.
T Consensus 295 dg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 295 DGATVASAAADETLRLWRCF 314 (318)
T ss_dssp TSSCEEEEETTTEEEEECCS
T ss_pred CCCEEEEEecCCeEEEEECC
Confidence 43 4443332 479999984
No 136
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=84.56 E-value=11 Score=39.87 Aligned_cols=110 Identities=12% Similarity=0.179 Sum_probs=74.3
Q ss_pred ccccCC-CccEEEEeccCCCCCCCCCCCeEEEEeccccc---ccccc-cCCCceeEEEeccCCe--EEEEe-cCeEEEEe
Q psy1644 265 SAIMNP-ASKVIALKGKAGNDNNPNAPKTLQIFNIEMKS---KMKAH-PMTDDVVFWKWISPNT--LALVT-ETSVYHWS 336 (923)
Q Consensus 265 SAIMnP-~~~IIALra~~~~~n~~~~g~~LQIFNle~K~---KLKs~-~m~E~VvfWkWis~~t--LglVT-~taVYHWs 336 (923)
+...+| ...++|.=+ ....|.|||+.+.. .+... ....+|.--.|-.... ++.-+ +..|..|+
T Consensus 236 ~v~~~p~~~~~l~s~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd 306 (430)
T 2xyi_A 236 DVAWHLLHESLFGSVA---------DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306 (430)
T ss_dssp EEEECSSCTTEEEEEE---------TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred eeEEeCCCCCEEEEEe---------CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEe
Confidence 455677 456666542 35689999999873 33333 2356677778876553 33333 25799999
Q ss_pred ccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeeccccc
Q psy1644 337 MEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVER 393 (923)
Q Consensus 337 i~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er 393 (923)
+.....|...|..|. ..|..-..++++++++++|- -.|.+.+|.+..
T Consensus 307 ~~~~~~~~~~~~~h~----~~v~~i~~sp~~~~~l~s~~------~d~~i~iwd~~~ 353 (430)
T 2xyi_A 307 LRNLKLKLHSFESHK----DEIFQVQWSPHNETILASSG------TDRRLHVWDLSK 353 (430)
T ss_dssp TTCTTSCSEEEECCS----SCEEEEEECSSCTTEEEEEE------TTSCCEEEEGGG
T ss_pred CCCCCCCeEEeecCC----CCEEEEEECCCCCCEEEEEe------CCCcEEEEeCCC
Confidence 987677887777663 46778888888887666652 357888888765
No 137
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=83.45 E-value=53 Score=35.33 Aligned_cols=126 Identities=15% Similarity=0.216 Sum_probs=70.9
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccccccccc-CCCceeEEEeccC-CeEEEEec-CeEEEEeccCCC
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHP-MTDDVVFWKWISP-NTLALVTE-TSVYHWSMEGDS 341 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~-m~E~VvfWkWis~-~tLglVT~-taVYHWsi~g~s 341 (923)
+...+|..+.||.=+ ....+.+||.+.+ .++... ...+|.--.|-.+ +.|+..+. ..|+.|+.++.
T Consensus 226 ~~~~s~dg~~l~~~~---------~d~~i~~w~~~~~-~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~- 294 (577)
T 2ymu_A 226 GVAFSPDGQTIASAS---------DDKTVKLWNRNGQ-LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ- 294 (577)
T ss_dssp EEEECTTSSCEEEEE---------TTSCEEEECTTSC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-
T ss_pred EEEECCCCCEEEEEe---------CCCEEEEEeCCCC-EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-
Confidence 344677766665532 3468999997654 233322 2345555555533 34444443 47999987543
Q ss_pred CchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecccccccccccccce--eEEeccCCCc
Q psy1644 342 TPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERKCSQPIEEKK--SRVAANAPKG 413 (923)
Q Consensus 342 ~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~~SQ~iEGk~--AkvAA~SP~g 413 (923)
+.+.+..| ...|..-..++++++++..+ -.|.+.+|+.+...-+.+.|.. ..-.|-+|.|
T Consensus 295 -~~~~~~~h----~~~v~~~~~~~~~~~l~t~~-------~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g 356 (577)
T 2ymu_A 295 -LLQTLTGH----SSSVWGVAFSPDGQTIASAS-------DDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG 356 (577)
T ss_dssp -EEEEECCC----SSCEEEEEECTTSSEEEEEE-------TTSCEEEEETTSCEEEEECCCSSCEEEEEECTTS
T ss_pred -EEEEEecC----CCCeEEEEECCCCCEEEEEe-------CCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCC
Confidence 33333333 23566667788888876544 3577888987765555555532 2233445543
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=83.43 E-value=25 Score=34.41 Aligned_cols=115 Identities=6% Similarity=0.061 Sum_probs=67.8
Q ss_pred cccccCCCccEEEEeccCCCCCCCCCCCeEEEEec---ccccccccccCCCceeEEEeccCCeEEEEe---cCeEEEEec
Q psy1644 264 DSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNI---EMKSKMKAHPMTDDVVFWKWISPNTLALVT---ETSVYHWSM 337 (923)
Q Consensus 264 DSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNl---e~K~KLKs~~m~E~VvfWkWis~~tLglVT---~taVYHWsi 337 (923)
.+...+|..+.++.-+. .+..+.+|++ .+...++.......+.--.|-.+....+|+ +..|+.|++
T Consensus 87 ~~~~~s~dg~~l~~~~~--------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 158 (343)
T 1ri6_A 87 THISTDHQGQFVFVGSY--------NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV 158 (343)
T ss_dssp SEEEECTTSSEEEEEET--------TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred cEEEEcCCCCEEEEEec--------CCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEe
Confidence 44557888876655421 3567999999 555555554444444444455554444554 478999999
Q ss_pred cCCCCchhhhh-cccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecccc
Q psy1644 338 EGDSTPEKMFD-RHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVE 392 (923)
Q Consensus 338 ~g~s~P~K~Fd-R~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~e 392 (923)
..+.....+.. +...-.+..+..-..+++++|+++.+- -.|.+.+|..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~------~~~~i~~~~~~ 208 (343)
T 1ri6_A 159 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE------LNSSVDVWELK 208 (343)
T ss_dssp CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET------TTTEEEEEESS
T ss_pred cCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC------CCCEEEEEEec
Confidence 75333322220 111112445666778899999877652 24677888764
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=83.40 E-value=52 Score=36.77 Aligned_cols=83 Identities=8% Similarity=0.015 Sum_probs=46.7
Q ss_pred CeEEEEecccccccccccC-------CCceeEEEeccCCeEEEEe-c-----CeEEEEeccCCCCchhhhhcc-cCCCCC
Q psy1644 291 KTLQIFNIEMKSKMKAHPM-------TDDVVFWKWISPNTLALVT-E-----TSVYHWSMEGDSTPEKMFDRH-STLNGC 356 (923)
Q Consensus 291 ~~LQIFNle~K~KLKs~~m-------~E~VvfWkWis~~tLglVT-~-----taVYHWsi~g~s~P~K~FdR~-~~L~~~ 356 (923)
..|.+||+++++..+...- ...+.--.|-.+..+.+++ . ..||.|++.+.. ..+++..+ ..-.+.
T Consensus 228 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~ 306 (723)
T 1xfd_A 228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV-CTKKHEDESEAWLHR 306 (723)
T ss_dssp EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC-EEEEEEEECSSCCCC
T ss_pred eEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc-ceEEEEeccCCEEec
Confidence 3899999988765443332 2345556787777654333 1 479999986533 33333222 111110
Q ss_pred eeEeeeeCCCCCeEEEEe
Q psy1644 357 QIINYRTDPKQTWLLLIG 374 (923)
Q Consensus 357 QIInYr~d~~~kW~~LvG 374 (923)
..-...-++|++|++..+
T Consensus 307 ~~~~~~~spdg~~l~~~~ 324 (723)
T 1xfd_A 307 QNEEPVFSKDGRKFFFIR 324 (723)
T ss_dssp CCCCCEECTTSCSEEEEE
T ss_pred cCCCceEcCCCCeEEEEE
Confidence 011346688999988763
No 140
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.55 E-value=14 Score=45.16 Aligned_cols=100 Identities=23% Similarity=0.276 Sum_probs=71.5
Q ss_pred EEEEecCCccEEEEEecCCCCCCCCCcccceeeeecCCCccCCcceeEEeccccce--EEEEeeeeeEEEEecccc----
Q psy1644 21 CFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYDV--VYLITKFGYIHVYDIETA---- 94 (923)
Q Consensus 21 cfa~r~~~~gkLhiiEig~~~~g~~~f~kK~vd~~Fppe~~~DFPvamqiS~k~G~--iyliTK~G~lhl~Dlet~---- 94 (923)
+|-||-.+.|.|.+.++.-.. +..+-..+.+-+.||..... .+|+.-.++.|+- ||+||.-|.+|-..+...
T Consensus 73 ~~~wrv~~~~~l~~~~~~~~~-~~~~~~~~~l~~~Fp~~i~p-~~v~f~d~~~~~~L~v~vit~~~~Ly~l~l~~~~f~~ 150 (950)
T 4gq2_M 73 TLRWSIFQNRTLTIFDVSLNS-KKEPLSKFNVKIHFPSNVMK-DGVAFSFSEHSDTTIIYAITHARVLYYIRLSKTWFQL 150 (950)
T ss_dssp EEEEEEETTTEEEEEECCCSC-CSSCCCCEEEEEECSSCEEE-EEEEEEEETGGGEEEEEEEETTCCEEEEEECTHHHHS
T ss_pred ceEEEEEcCCeEEEEEeeccC-CccccCCeEEEEECCCcccC-CceEEeccCCCCeEEEEEEcCCCCEEEEEECHHHccC
Confidence 577888777889999996433 34455667899999665554 8899999988885 589999999998766432
Q ss_pred ---------------------eeeeecccCCCcEEEeeccCCCcceEEEecC
Q psy1644 95 ---------------------TCIYMNRISSDTIFVTAPHEATGGIIGLTNV 125 (923)
Q Consensus 95 ---------------------t~iy~~rIS~~~if~ta~~~~t~Gil~vn~~ 125 (923)
.+.++.-+|++.++++..+ ||++.+.+.
T Consensus 151 ~~~~~~~~W~~~~~p~~f~~r~p~~l~av~~~~l~Vsl~d---GgLlrl~r~ 199 (950)
T 4gq2_M 151 PDARLDDDWCLCYRPISFLNQKPDLMAAISTSEICVSFFN---GGLTKIILN 199 (950)
T ss_dssp TTCCCCTTSEEEECCGGGTTSCEEEEEECSSSEEEEEETT---SCEEEEEEE
T ss_pred ccccccccccccccCcCccCCCceEEEEEcCCeEEEEECC---CCEEEEEec
Confidence 2345556666777776632 777777654
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=81.68 E-value=7.7 Score=43.51 Aligned_cols=101 Identities=12% Similarity=0.034 Sum_probs=63.2
Q ss_pred cccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEeccC-CeEEEEecCeEEEEeccCC--
Q psy1644 264 DSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISP-NTLALVTETSVYHWSMEGD-- 340 (923)
Q Consensus 264 DSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis~-~tLglVT~taVYHWsi~g~-- 340 (923)
.+.-.+|. +.++.- ....+.+||+++++...-..-...+..-+|-.+ +.|+.+.+..||.|++.+.
T Consensus 85 ~~~~~spd-~~~~~~----------~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 85 FRTLDAGR-GLVVLF----------TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGE 153 (706)
T ss_dssp EEEEETTT-TEEEEE----------ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTS
T ss_pred eeEEECCC-CeEEEE----------ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccc
Confidence 35557888 555544 236899999988754333333445555677533 5799999999999999762
Q ss_pred --CCchhhhhcccC-C-CC--------CeeEeeeeCCCCCeEEEEee
Q psy1644 341 --STPEKMFDRHST-L-NG--------CQIINYRTDPKQTWLLLIGI 375 (923)
Q Consensus 341 --s~P~K~FdR~~~-L-~~--------~QIInYr~d~~~kW~~LvGI 375 (923)
..+..++.-+.. . ++ ..+.+..-++|++|++..+.
T Consensus 154 ~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~ 200 (706)
T 2z3z_A 154 GMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRM 200 (706)
T ss_dssp CCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEE
T ss_pred cCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEE
Confidence 333333322111 0 00 11457778999999988874
No 142
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=81.36 E-value=80 Score=35.98 Aligned_cols=74 Identities=7% Similarity=-0.016 Sum_probs=37.9
Q ss_pred ceeeecceEEEEEeccCCCceEEEEECCCCCCCcccccCcc---ccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccc
Q psy1644 224 TLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISAD---SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEM 300 (923)
Q Consensus 224 ~lTmESDkyICVRE~~~~~~qVvIVDL~n~~~v~Rrpi~AD---SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~ 300 (923)
.+++..+.++-+-...++..+|.++|+.+.....+-+.... +.-.+|..+.+++.... .....++..||+++
T Consensus 340 ~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss-----~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 340 WVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTS-----FLSPGIIYHCDLTK 414 (710)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEEC-----SSCCCEEEEEETTS
T ss_pred EEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeC-----CCCCCEEEEEECCC
Confidence 34454233333433344556899999866542222111111 12246766666665321 11456788888876
Q ss_pred cc
Q psy1644 301 KS 302 (923)
Q Consensus 301 K~ 302 (923)
++
T Consensus 415 g~ 416 (710)
T 2xdw_A 415 EE 416 (710)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=80.82 E-value=15 Score=34.83 Aligned_cols=128 Identities=13% Similarity=0.154 Sum_probs=74.6
Q ss_pred CceEEEEECCCCCCCcc--cccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccc-ccccccccCC--CceeEE
Q psy1644 242 SAQVVIIDMNDPTNPIR--RPISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEM-KSKMKAHPMT--DDVVFW 316 (923)
Q Consensus 242 ~~qVvIVDL~n~~~v~R--rpi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~-K~KLKs~~m~--E~VvfW 316 (923)
..+|.++|+.+...... -+-...+...+|..+.||.- ....|.+||+++ .+........ ..+.--
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~----------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 90 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLN----------SEGLLYRLSLAGDPSPEKVDTGFATICNNDH 90 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEE----------ETTEEEEEESSSCCSCEECCCTTCCCBCSCC
T ss_pred ceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEE----------cCCeEEEEeCCCCCCceEeccccccccccce
Confidence 34677777665432211 11223456789999888875 235899999998 5443333222 344445
Q ss_pred EeccC-CeEEEEe-----cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecc
Q psy1644 317 KWISP-NTLALVT-----ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYS 390 (923)
Q Consensus 317 kWis~-~tLglVT-----~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS 390 (923)
.|-.+ +.|+.+. ...+|.|++.+.. + +.+..+. .+.....++++++++..+-. .|.++||.
T Consensus 91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~-----~~~~~~~spdg~~l~~~~~~------~~~~~l~~ 157 (297)
T 2ojh_A 91 GISPDGALYAISDKVEFGKSAIYLLPSTGGT-P-RLMTKNL-----PSYWHGWSPDGKSFTYCGIR------DQVFDIYS 157 (297)
T ss_dssp EECTTSSEEEEEECTTTSSCEEEEEETTCCC-C-EECCSSS-----SEEEEEECTTSSEEEEEEEE------TTEEEEEE
T ss_pred EECCCCCEEEEEEeCCCCcceEEEEECCCCc-e-EEeecCC-----CccceEECCCCCEEEEEECC------CCceEEEE
Confidence 66544 4566665 3577777765432 2 2222221 25556788999998866532 36678887
Q ss_pred cc
Q psy1644 391 VE 392 (923)
Q Consensus 391 ~e 392 (923)
++
T Consensus 158 ~~ 159 (297)
T 2ojh_A 158 MD 159 (297)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 144
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=79.88 E-value=51 Score=32.80 Aligned_cols=92 Identities=14% Similarity=0.245 Sum_probs=54.9
Q ss_pred CCeEEEEeccccc-------ccccccCCCceeEEEeccC----CeEEEEe-cCeEEEEeccCCCCch--hhhhcccCCCC
Q psy1644 290 PKTLQIFNIEMKS-------KMKAHPMTDDVVFWKWISP----NTLALVT-ETSVYHWSMEGDSTPE--KMFDRHSTLNG 355 (923)
Q Consensus 290 g~~LQIFNle~K~-------KLKs~~m~E~VvfWkWis~----~tLglVT-~taVYHWsi~g~s~P~--K~FdR~~~L~~ 355 (923)
..++.|||+++.. .++.| ...|.==.|-.. ..|+-.+ +..|..|+++....+. +++..+ .. .
T Consensus 179 D~~v~lwd~~~~~~~~~~~~~l~~H--~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~-~~-~ 254 (297)
T 2pm7_B 179 DNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEE-KF-P 254 (297)
T ss_dssp TSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSS-CC-S
T ss_pred CCcEEEEEEcCCCceEEEEEEecCC--CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecc-cC-C
Confidence 4689999998654 22223 345655666543 4565554 3589999997543321 233111 11 2
Q ss_pred CeeEeeeeCCCCCeEEEEeeecccccccceeeecccc
Q psy1644 356 CQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVE 392 (923)
Q Consensus 356 ~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~e 392 (923)
..|..-.-++++++++..| -+|.+.||...
T Consensus 255 ~~v~~~~~s~~g~~las~~-------~D~~v~lw~~~ 284 (297)
T 2pm7_B 255 DVLWRASWSLSGNVLALSG-------GDNKVTLWKEN 284 (297)
T ss_dssp SCEEEEEECSSSCCEEEEE-------TTSCEEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEc-------CCCcEEEEEEC
Confidence 3466666778888877655 36788898754
No 145
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=79.47 E-value=33 Score=37.15 Aligned_cols=88 Identities=14% Similarity=0.229 Sum_probs=53.2
Q ss_pred ceEEEEECCCCCCCccc---ccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccc--ccccccC-C----Cc
Q psy1644 243 AQVVIIDMNDPTNPIRR---PISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKS--KMKAHPM-T----DD 312 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~Rr---pi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~--KLKs~~m-~----E~ 312 (923)
..|.++|+.....+... .-..-++-.+|..+.||.=+ ..+++.+||++.+. .+..+.. . ..
T Consensus 172 g~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 242 (434)
T 2oit_A 172 GSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK---------QNGTVVQYLPTLQEKKVIPCPPFYESDHPVR 242 (434)
T ss_dssp SCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE---------TTSCEEEECTTCCEEEEECCCTTCCTTSCEE
T ss_pred CeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc---------CCCcEEEEccCCcccccccCCcccCCCCcee
Confidence 36777777655322111 01123456788888887752 34589999997322 2222221 1 27
Q ss_pred eeEEEeccCCeEEEEecC---------eEEEEeccC
Q psy1644 313 VVFWKWISPNTLALVTET---------SVYHWSMEG 339 (923)
Q Consensus 313 VvfWkWis~~tLglVT~t---------aVYHWsi~g 339 (923)
|.=+.|..+..+.+++.+ +|+.|++..
T Consensus 243 v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 243 VLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred EEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 899999988777766542 499999854
No 146
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=78.43 E-value=60 Score=32.82 Aligned_cols=140 Identities=11% Similarity=0.142 Sum_probs=68.1
Q ss_pred CceEEEEECCCCCC--Ccccc--cCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEE-
Q psy1644 242 SAQVVIIDMNDPTN--PIRRP--ISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFW- 316 (923)
Q Consensus 242 ~~qVvIVDL~n~~~--v~Rrp--i~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfW- 316 (923)
..+|.++|+..... ....+ ...-+....|..+.||.-+.- ++ .....|.+||+++.+.-.-..++. ...+
T Consensus 215 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~---~~-~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~ 289 (388)
T 3pe7_A 215 DARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYL---KG-SPDRFIYSADPETLENRQLTSMPA-CSHLM 289 (388)
T ss_dssp SCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEE---TT-CCCEEEEEECTTTCCEEEEEEECC-EEEEE
T ss_pred cceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecC---CC-CCcceEEEEecCCCceEEEEcCCC-ceeee
Confidence 44788888765431 11111 011134567888766664211 00 011249999998876322222222 1111
Q ss_pred ------EeccC-CeEEEEe----------cCeEEEEeccCCCCchhhhhcccCCC---C---CeeEeeeeCCCCCeEEEE
Q psy1644 317 ------KWISP-NTLALVT----------ETSVYHWSMEGDSTPEKMFDRHSTLN---G---CQIINYRTDPKQTWLLLI 373 (923)
Q Consensus 317 ------kWis~-~tLglVT----------~taVYHWsi~g~s~P~K~FdR~~~L~---~---~QIInYr~d~~~kW~~Lv 373 (923)
.|-.+ +.|+... ...+|.|++++.. ...+........ . ..+.+-.-++|++|++..
T Consensus 290 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~ 368 (388)
T 3pe7_A 290 SNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT-QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFT 368 (388)
T ss_dssp ECTTSSEEEEEECCC------------CCCCEEEEEETTTTE-EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred ecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc-eEEeccccCcccccccccccCCCCccCCCCCCEEEEE
Confidence 23222 2344432 3489999987532 222222211000 0 023445668999998876
Q ss_pred eeecccccccceeeeccccc
Q psy1644 374 GISAVSNRVVGAMQLYSVER 393 (923)
Q Consensus 374 GI~~~~~~i~G~mQLYS~er 393 (923)
+- -.|..|||.++-
T Consensus 369 s~------~~g~~~l~~~~l 382 (388)
T 3pe7_A 369 SD------VHGKPALYLATL 382 (388)
T ss_dssp EC------TTSSCEEEEEEC
T ss_pred ec------CCCceeEEEEEC
Confidence 42 247788998754
No 147
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=77.00 E-value=1e+02 Score=34.63 Aligned_cols=38 Identities=11% Similarity=-0.156 Sum_probs=32.1
Q ss_pred CCcceeEEecc----ccceEEEEee-eeeEEEEecccceeeee
Q psy1644 62 NDFPVAMQVSA----KYDVVYLITK-FGYIHVYDIETATCIYM 99 (923)
Q Consensus 62 ~DFPvamqiS~----k~G~iyliTK-~G~lhl~Dlet~t~iy~ 99 (923)
+..|-++.+|+ .-..+|+... -|.|.|||..|+.++..
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~ 263 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI 263 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccccee
Confidence 66799999998 7778988875 59999999999998764
No 148
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=76.69 E-value=1e+02 Score=34.60 Aligned_cols=139 Identities=6% Similarity=0.018 Sum_probs=70.1
Q ss_pred cceeeecceEEEEEec--cCCCceEEEEECCCCCCCcc--ccc-----CccccccCCCccEEEEeccCCCCCCCCCCCeE
Q psy1644 223 NTLTMESDKFICVREK--IAESAQVVIIDMNDPTNPIR--RPI-----SADSAIMNPASKVIALKGKAGNDNNPNAPKTL 293 (923)
Q Consensus 223 ~~lTmESDkyICVRE~--~~~~~qVvIVDL~n~~~v~R--rpi-----~ADSAIMnP~~~IIALra~~~~~n~~~~g~~L 293 (923)
.++.+...+++.+-.. ..+...|.++|+........ .+- ...+....|..++++.-. .....
T Consensus 290 ~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~---------~~g~~ 360 (741)
T 2ecf_A 290 ARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSE---------RTGFQ 360 (741)
T ss_dssp EEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEEC---------TTSSC
T ss_pred EEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEec---------CCCcc
Confidence 3444523355554432 22345899999987642211 111 113556788888776641 12245
Q ss_pred EEEecccccccccccCCC-ceeEEEeccCC--eEEEEecC----eEEEEeccCC-CCchhhhhcccCCCCCeeEeeeeCC
Q psy1644 294 QIFNIEMKSKMKAHPMTD-DVVFWKWISPN--TLALVTET----SVYHWSMEGD-STPEKMFDRHSTLNGCQIINYRTDP 365 (923)
Q Consensus 294 QIFNle~K~KLKs~~m~E-~VvfWkWis~~--tLglVT~t----aVYHWsi~g~-s~P~K~FdR~~~L~~~QIInYr~d~ 365 (923)
+||.++...+++..+-.+ +|.--.|+|++ .|+..... .+..|+++.+ ..+..+-. ...+.....++
T Consensus 361 ~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~------~~~~~~~~~sp 434 (741)
T 2ecf_A 361 HLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK------APGMHSASFAR 434 (741)
T ss_dssp EEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC------SCSEEEEEECT
T ss_pred EEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc------CCCceEEEECC
Confidence 566555333333333322 33333344543 45544332 5666766432 22332221 22355777889
Q ss_pred CCCeEEEEeee
Q psy1644 366 KQTWLLLIGIS 376 (923)
Q Consensus 366 ~~kW~~LvGI~ 376 (923)
|++++++..-+
T Consensus 435 dg~~l~~~~~~ 445 (741)
T 2ecf_A 435 NASVYVDSWSN 445 (741)
T ss_dssp TSSEEEEEEEE
T ss_pred CCCEEEEEecC
Confidence 99999887654
No 149
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=73.81 E-value=28 Score=39.21 Aligned_cols=102 Identities=10% Similarity=0.142 Sum_probs=64.9
Q ss_pred cccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccc--ccccccC-CCceeEEEeccCC-eEEEEecCeEEEEeccC
Q psy1644 264 DSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKS--KMKAHPM-TDDVVFWKWISPN-TLALVTETSVYHWSMEG 339 (923)
Q Consensus 264 DSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~--KLKs~~m-~E~VvfWkWis~~-tLglVT~taVYHWsi~g 339 (923)
.+...+|..+.||.- ....|.+||+++.. +++...- ...+..=.|-.+. .|+.+....||.|++.+
T Consensus 112 ~~~~~SpDg~~l~~~----------~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~ 181 (741)
T 2ecf_A 112 VDYQWSPDAQRLLFP----------LGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLAS 181 (741)
T ss_dssp CCCEECTTSSEEEEE----------ETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTT
T ss_pred ceeEECCCCCEEEEE----------eCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCC
Confidence 456678998888886 23789999999873 3333322 3456666776554 59999999999999965
Q ss_pred CCCchhhhhcccC-C-CC----------CeeEeeeeCCCCCeEEEEeee
Q psy1644 340 DSTPEKMFDRHST-L-NG----------CQIINYRTDPKQTWLLLIGIS 376 (923)
Q Consensus 340 ~s~P~K~FdR~~~-L-~~----------~QIInYr~d~~~kW~~LvGI~ 376 (923)
. .+..++.-+.. . ++ ..+....-++|++|++.....
T Consensus 182 g-~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d 229 (741)
T 2ecf_A 182 G-RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARID 229 (741)
T ss_dssp T-EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEE
T ss_pred C-CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEc
Confidence 3 22223221110 0 00 013456778999998877643
No 150
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=73.22 E-value=81 Score=31.73 Aligned_cols=90 Identities=18% Similarity=0.289 Sum_probs=53.9
Q ss_pred CCeEEEEeccccc------ccccccCCCceeEEEeccC-----CeEEEEec-CeEEEEeccCCC---CchhhhhcccCCC
Q psy1644 290 PKTLQIFNIEMKS------KMKAHPMTDDVVFWKWISP-----NTLALVTE-TSVYHWSMEGDS---TPEKMFDRHSTLN 354 (923)
Q Consensus 290 g~~LQIFNle~K~------KLKs~~m~E~VvfWkWis~-----~tLglVT~-taVYHWsi~g~s---~P~K~FdR~~~L~ 354 (923)
..++.+||++... .++.| ...|.-=.|-.. +.|+-... ..|..|+++... ...+.+..|
T Consensus 188 D~~v~lWd~~~~~~~~~~~~l~~h--~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~---- 261 (316)
T 3bg1_A 188 DNLIKLWKEEEDGQWKEEQKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF---- 261 (316)
T ss_dssp TSBCCEEEECTTSCEEEEECCBCC--SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC----
T ss_pred CCeEEEEEeCCCCccceeeecccC--CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC----
Confidence 4689999997542 23333 244655667543 45666654 489999986522 122333333
Q ss_pred CCeeEeeeeCCCCCeEEEEeeecccccccceeeecccc
Q psy1644 355 GCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVE 392 (923)
Q Consensus 355 ~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~e 392 (923)
...|..-.-++++++++..| -+|.+.||...
T Consensus 262 ~~~v~~v~~sp~g~~las~~-------~D~~v~lw~~~ 292 (316)
T 3bg1_A 262 NDVVWHVSWSITANILAVSG-------GDNKVTLWKES 292 (316)
T ss_dssp SSCEEEEEECTTTCCEEEEE-------SSSCEEEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEc-------CCCeEEEEEEC
Confidence 23566666678888776555 36788888754
No 151
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=72.59 E-value=1.2e+02 Score=33.46 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=46.2
Q ss_pred ccEEEEEecCCCCCCCCCcccceeeeecCC--Cc-cCCcceeEEeccccceEEEEee--eeeEEEEecccceeeeeccc
Q psy1644 29 GGKLHIIEVGTPPAGNTPLAKKAVDVFFPP--EA-ANDFPVAMQVSAKYDVVYLITK--FGYIHVYDIETATCIYMNRI 102 (923)
Q Consensus 29 ~gkLhiiEig~~~~g~~~f~kK~vd~~Fpp--e~-~~DFPvamqiS~k~G~iyliTK--~G~lhl~Dlet~t~iy~~rI 102 (923)
.+.++++...+. +-.-.+..|+ .. .+..|-.|.+|..-..+|+..- .+.|.++|++|++.+-.=.+
T Consensus 108 ~~~VsviD~~t~--------~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v 178 (386)
T 3sjl_D 108 TDYVEVFDPVTL--------LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 178 (386)
T ss_dssp EEEEEEECTTTC--------CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEECCCC--------eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence 356788876542 2223344453 22 3679999999999999999853 58999999999998754443
No 152
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=71.62 E-value=8.7 Score=39.59 Aligned_cols=54 Identities=15% Similarity=0.375 Sum_probs=40.3
Q ss_pred cccEEEEEeccceEEEEecCCcceeeeeccc--------------------CCceEEeeccCCCCcEEEEcC-CCeEE
Q psy1644 733 KYDVVYLITKFGYIHVYDIETATCIYMNRIS--------------------SDTIFVTAPHEATGGIIGVNR-KGQVL 789 (923)
Q Consensus 733 KyGvIyvITK~GflhlyDleTgt~Iy~nRIS--------------------~dtIFvta~~~~t~Gii~VNr-kGqVL 789 (923)
--|.||+.|..|.|+.||.+||+.+.+.+.. .+.||+++. .+++++++. .|+++
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---~g~l~a~d~~tG~~~ 126 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE---KAQVYALNTSDGTVA 126 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET---TSEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC---CCEEEEEECCCCCEE
Confidence 3589999999999999999999999877663 234555443 356777774 47765
No 153
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=70.49 E-value=9.8 Score=43.23 Aligned_cols=218 Identities=14% Similarity=0.141 Sum_probs=123.3
Q ss_pred HHHHHHHhcChhHHHHHHHHhCCCc-cHHHHHHHHHhcCCchhhHHHHhhhcCCCCCcCccccchhhhhhhcccccccCC
Q psy1644 466 VIQSFAETGQFQKIVLYAKKVGYSP-DYVFLLRNVMRVNPDQGVGFAQMLVQDDEPLADINQSYEGLFYFLGSIVNYSQD 544 (923)
Q Consensus 466 Vi~clae~Gqfdkiv~Y~~~vgytp-Dy~~LL~~i~~~nP~~a~efA~~L~~~~~pl~di~~~~egLyy~Lgsivn~s~d 544 (923)
.+.||.+.|+|+++++-+++.+ .| .|..++...+..+ + .+.|+..... =.++.+.+.|-..+|-. -..
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA~-~~~~Wk~v~~aCv~~~-e--f~lA~~~~l~--L~~~ad~l~~lv~~Yek-----~G~ 222 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKAN-STRTWKEVCFACVDGK-E--FRLAQMCGLH--IVVHADELEELINYYQD-----RGY 222 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHT-CHHHHHHHHHHHHHTT-C--HHHHHHTTTT--TTTCHHHHHHHHHHHHH-----TTC
T ss_pred HHHHHHHhccHHHHHHHHHHcC-CchhHHHHHHHHHHcC-c--HHHHHHHHHH--HHhCHhhHHHHHHHHHH-----CCC
Confidence 7899999999999999999998 55 6788777665544 1 2333221111 00111111111111100 001
Q ss_pred cchhhHHHHHH-----HhcCChhhhHHhhhcCCccChHHHHhHHhhccC-CCCCceEEeeccccchhHHHHHHHh-cCch
Q psy1644 545 QEVHFKYIQAA-----CKTGQIKEVERICRESNCYNAERVKNFLKEAKL-TDQLPLIIVCDRFDFVHDLVLYLYR-NNLQ 617 (923)
Q Consensus 545 ~dVhfKYIeAA-----~k~gq~~EvERicresn~YdpekvKnfLKeakL-~d~~PLI~VCDrf~fV~dLv~YLY~-n~~~ 617 (923)
-+--++|+|+| +.+|=|+|+ .|+ =.-|.|||+.+.||---- -+--|+|=+|+.-.--.||+.-.++ ...-
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel-~il--~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTEL-AIL--YSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHH-HHH--HHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHH-HHH--HHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 12223444444 233444444 111 135899999998874321 2233699999998888888854443 3344
Q ss_pred heehhhhhcc--------------Cccccce---eee-eccccCCHHHhhhhhccCcchhhhHHhhhccccccchhhHHH
Q psy1644 618 KYIEIYVQKG--------------RKHLLEK---WLK-EEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDLVL 679 (923)
Q Consensus 618 k~IEvYvqkv--------------Np~~tP~---Vvg-LlD~dc~E~~Ik~LL~sv~~l~~~~~v~~~~~~~~pv~~Lv~ 679 (923)
+-+.+..+.- +|+++-. .|. .| +.-+..+..||..+ .+.+-.+-.|.
T Consensus 300 ~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l-------------~~~ld~~r~v~ 364 (449)
T 1b89_A 300 NAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVL-------------SPRLDHTRAVN 364 (449)
T ss_dssp HHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH-------------GGGCCHHHHHH
T ss_pred HHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHH-------------HhccCcHHHHH
Confidence 5666666553 2333222 333 33 44555566666543 23334455677
Q ss_pred HH-hhcchhHHHHHHHHHHHHhhcccchhhhHHHHhH
Q psy1644 680 YL-YRNNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLY 715 (923)
Q Consensus 680 ev-~RnrL~kll~p~LE~~~~~g~q~~~v~nalakiy 715 (923)
.+ +-+-| -|+.|||++- ++....+|-.||-.+|
T Consensus 365 ~~~~~~~l-~l~~~yl~~v--~~~n~~~vnealn~l~ 398 (449)
T 1b89_A 365 YFSKVKQL-PLVKPYLRSV--QNHNNKSVNESLNNLF 398 (449)
T ss_dssp HHHHTTCT-TTTHHHHHHH--HTTCCHHHHHHHHHHH
T ss_pred HHHHcCCc-HHHHHHHHHH--HHhhHHHHHHHHHHHH
Confidence 77 57889 9999999643 3556788999998888
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=68.71 E-value=67 Score=32.20 Aligned_cols=113 Identities=7% Similarity=0.125 Sum_probs=63.2
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccccccc---ccCC--CceeEEEeccCCeEEEEe---cCeEEEEe
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKA---HPMT--DDVVFWKWISPNTLALVT---ETSVYHWS 336 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs---~~m~--E~VvfWkWis~~tLglVT---~taVYHWs 336 (923)
+...+|..++++.-. ....+.+|+++...++.. +... ....--.|-.+....+|+ ...|+.|+
T Consensus 145 ~~~~spdg~l~v~~~---------~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~ 215 (347)
T 3hfq_A 145 YTDLTPDNRLAVIDL---------GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLK 215 (347)
T ss_dssp EEEECTTSCEEEEET---------TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEECCCCcEEEEeC---------CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 466789888554431 346899999984333332 2222 133344555555545554 34788888
Q ss_pred ccCCCCchhhhhcccCCC-----CCeeEeeeeCCCCCeEEEEeeecccccccceeeecccc
Q psy1644 337 MEGDSTPEKMFDRHSTLN-----GCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVE 392 (923)
Q Consensus 337 i~g~s~P~K~FdR~~~L~-----~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~e 392 (923)
++......+...+...+. ...+-.-..++|++|+.+.+- -.|.+.+|.++
T Consensus 216 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~------~~~~v~v~~~~ 270 (347)
T 3hfq_A 216 YDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR------GYNTLAVFAVT 270 (347)
T ss_dssp EETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE------TTTEEEEEEEC
T ss_pred ecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC------CCCEEEEEEEC
Confidence 864221111111111221 145677788999999876542 24677888765
No 155
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=68.28 E-value=1.1e+02 Score=31.37 Aligned_cols=34 Identities=6% Similarity=-0.029 Sum_probs=25.1
Q ss_pred cceeEEeccccceEEEEeeeeeEEEEecc-cceeee
Q psy1644 64 FPVAMQVSAKYDVVYLITKFGYIHVYDIE-TATCIY 98 (923)
Q Consensus 64 FPvamqiS~k~G~iyliTK~G~lhl~Dle-t~t~iy 98 (923)
-|.++.+|+.-..+|+.... .+.+||+. +|....
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~ 75 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH 75 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE
Confidence 46667777776778866654 89999998 887754
No 156
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=68.03 E-value=16 Score=39.34 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=14.9
Q ss_pred HHHHHHHhcChhHHHHHHHHh
Q psy1644 466 VIQSFAETGQFQKIVLYAKKV 486 (923)
Q Consensus 466 Vi~clae~Gqfdkiv~Y~~~v 486 (923)
.+.|+++.|++++++.+.++.
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 667777777777777776554
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=67.09 E-value=1.8e+02 Score=33.33 Aligned_cols=144 Identities=11% Similarity=0.110 Sum_probs=79.5
Q ss_pred cceeeecceEEEEEeccC--CCceEEEEECCCCC----CC-ccc--------ccC---ccccccCCCccEEE-EeccCCC
Q psy1644 223 NTLTMESDKFICVREKIA--ESAQVVIIDMNDPT----NP-IRR--------PIS---ADSAIMNPASKVIA-LKGKAGN 283 (923)
Q Consensus 223 ~~lTmESDkyICVRE~~~--~~~qVvIVDL~n~~----~v-~Rr--------pi~---ADSAIMnP~~~IIA-Lra~~~~ 283 (923)
.++++..|.=+.+..... +...|.++|+.... .. .++ .+. ..+..-.|..+-|+ .... .
T Consensus 263 ~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~-~- 340 (740)
T 4a5s_A 263 CDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISN-E- 340 (740)
T ss_dssp EEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEEC-T-
T ss_pred EEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEc-C-
Confidence 345555554333333222 23378999988765 11 121 111 22455678888777 4421 0
Q ss_pred CCCCCCCCeEEEEecccccccccccC-CCceeEEEeccCCeEEEEecC--------eEEEEeccCCCCchhhhhcccCC-
Q psy1644 284 DNNPNAPKTLQIFNIEMKSKMKAHPM-TDDVVFWKWISPNTLALVTET--------SVYHWSMEGDSTPEKMFDRHSTL- 353 (923)
Q Consensus 284 ~n~~~~g~~LQIFNle~K~KLKs~~m-~E~VvfWkWis~~tLglVT~t--------aVYHWsi~g~s~P~K~FdR~~~L- 353 (923)
+ ...+|.+||++++... ..+- .-+|...-|.+.+.|...... .+|..+++|...++.+. ..+
T Consensus 341 -~---G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt---~~~~ 412 (740)
T 4a5s_A 341 -E---GYRHICYFQIDKKDCT-FITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLS---CELN 412 (740)
T ss_dssp -T---SCEEEEEEETTCSSCE-ESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESS---TTTS
T ss_pred -C---CceEEEEEECCCCceE-ecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeec---cccC
Confidence 1 2468999999876432 2222 224544445667788877654 67777776543322221 111
Q ss_pred -CCCeeEeeeeCCCCCeEEEEeee
Q psy1644 354 -NGCQIINYRTDPKQTWLLLIGIS 376 (923)
Q Consensus 354 -~~~QIInYr~d~~~kW~~LvGI~ 376 (923)
.++..-+...+++++|+++.--+
T Consensus 413 ~~~~~~~~~~~S~dg~~~~~~~s~ 436 (740)
T 4a5s_A 413 PERCQYYSVSFSKEAKYYQLRCSG 436 (740)
T ss_dssp TTTBCBEEEEECTTSSEEEEEECS
T ss_pred CCCCceEEEEECCCCCEEEEEeCC
Confidence 24677888899999998776433
No 158
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=65.49 E-value=1.4e+02 Score=31.29 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=40.9
Q ss_pred ccEEEEEecCCCCCCCCCcccceeeeecCCCccCCcceeEEeccccceEEEEee----------eeeEEEEecccceeee
Q psy1644 29 GGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYDVVYLITK----------FGYIHVYDIETATCIY 98 (923)
Q Consensus 29 ~gkLhiiEig~~~~g~~~f~kK~vd~~Fppe~~~DFPvamqiS~k~G~iyliTK----------~G~lhl~Dlet~t~iy 98 (923)
.+++.+++..+ +. .+ -.+|. +..| .|.+|+.-..+|+... .+.|.+||+.|++.+-
T Consensus 30 d~~v~v~D~~t---~~------~~-~~i~~---g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~ 95 (361)
T 2oiz_A 30 ESRVHVYDYTN---GK------FL-GMVPT---AFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEK 95 (361)
T ss_dssp GCEEEEEETTT---CC------EE-EEEEC---CEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEE
T ss_pred cCeEEEEECCC---Ce------EE-EEecC---CCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEE
Confidence 35888987643 11 11 12333 4578 9999999999999974 6789999999988764
Q ss_pred e
Q psy1644 99 M 99 (923)
Q Consensus 99 ~ 99 (923)
.
T Consensus 96 ~ 96 (361)
T 2oiz_A 96 E 96 (361)
T ss_dssp E
T ss_pred E
Confidence 4
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=64.33 E-value=1.9e+02 Score=32.52 Aligned_cols=143 Identities=10% Similarity=0.090 Sum_probs=73.5
Q ss_pred ccceeeecceEEEEEec--cCCCceEEEEE----CCCCCCCccc-------ccCcc-----ccccCCCccEEEEeccCCC
Q psy1644 222 FNTLTMESDKFICVREK--IAESAQVVIID----MNDPTNPIRR-------PISAD-----SAIMNPASKVIALKGKAGN 283 (923)
Q Consensus 222 F~~lTmESDkyICVRE~--~~~~~qVvIVD----L~n~~~v~Rr-------pi~AD-----SAIMnP~~~IIALra~~~~ 283 (923)
..++.+..|..+.+-.. ..+..+|.++| +.......-. .-..+ +....|..+.|++-..-
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-- 332 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD-- 332 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC--
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEc--
Confidence 34566777766655422 22334788999 5443211111 01122 45567887766652110
Q ss_pred CCCCCCCCeEEEEecccccccccccCC----CceeEEEeccCCeEEEEecC------eEEEEecc--CCC-Cchhhhhcc
Q psy1644 284 DNNPNAPKTLQIFNIEMKSKMKAHPMT----DDVVFWKWISPNTLALVTET------SVYHWSME--GDS-TPEKMFDRH 350 (923)
Q Consensus 284 ~n~~~~g~~LQIFNle~K~KLKs~~m~----E~VvfWkWis~~tLglVT~t------aVYHWsi~--g~s-~P~K~FdR~ 350 (923)
. .....|.++++++++ .+..+-. ..+.+| +.+.|...... .+..|.++ +.. .+..+.
T Consensus 333 -~--~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~---d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~--- 402 (719)
T 1z68_A 333 -K--DGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV---TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVT--- 402 (719)
T ss_dssp -T--TSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE---CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESS---
T ss_pred -c--CCceEEEEEECCCCc-eEecccCceEEEEEEEE---eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceecc---
Confidence 0 123478888887654 2322221 134555 88888877643 24445553 221 233221
Q ss_pred cCCC--CCeeEeeeeCCCCCeEEEEeee
Q psy1644 351 STLN--GCQIINYRTDPKQTWLLLIGIS 376 (923)
Q Consensus 351 ~~L~--~~QIInYr~d~~~kW~~LvGI~ 376 (923)
..|. .+.+.....+++.+|+++.+-+
T Consensus 403 ~~~~~~~~~~~~~~~s~dg~~l~~~~s~ 430 (719)
T 1z68_A 403 CHLRKERCQYYTASFSDYAKYYALVCYG 430 (719)
T ss_dssp TTTTTTTBCBEEEEECGGGSSEEEEECC
T ss_pred CccCCCCCceEEEEECCCCCEEEEEcCC
Confidence 1122 2455566778889998887643
No 160
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=62.34 E-value=2.1e+02 Score=32.49 Aligned_cols=136 Identities=12% Similarity=0.130 Sum_probs=72.2
Q ss_pred ceEEEEEecc-CC-CceEEEEECCC------CCC-C--cccccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEec
Q psy1644 230 DKFICVREKI-AE-SAQVVIIDMND------PTN-P--IRRPISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNI 298 (923)
Q Consensus 230 DkyICVRE~~-~~-~~qVvIVDL~n------~~~-v--~Rrpi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNl 298 (923)
.+||.+.... .+ .++|.++|+.. +.. . ...+..+......|..+.|++.+.. .+....|.++++
T Consensus 244 g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~-----~~~~~~l~~~d~ 318 (710)
T 2xdw_A 244 GRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNR-----HSPNYRLINIDF 318 (710)
T ss_dssp SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECT-----TCTTCEEEEEET
T ss_pred CCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECC-----CCCCCEEEEEeC
Confidence 3555544332 22 56899999976 421 1 2223334444556777777776321 112357888998
Q ss_pred ccccc--cccccCC-C--ceeEEEeccCCeEEEEecC----eEEEEec-cCCCCchhhhhcccCCCCCeeEeeeeCCCCC
Q psy1644 299 EMKSK--MKAHPMT-D--DVVFWKWISPNTLALVTET----SVYHWSM-EGDSTPEKMFDRHSTLNGCQIINYRTDPKQT 368 (923)
Q Consensus 299 e~K~K--LKs~~m~-E--~VvfWkWis~~tLglVT~t----aVYHWsi-~g~s~P~K~FdR~~~L~~~QIInYr~d~~~k 368 (923)
++..+ .+...-. + .+.-..|.+.+.|.+.... .+|.|++ +|. +.+.+ .+....+.....+++.+
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~--~~~~l----~~~~~~v~~~~~s~d~~ 392 (710)
T 2xdw_A 319 TDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA--LLKIF----PLEVGSVVGYSGQKKDT 392 (710)
T ss_dssp TSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC--EEEEE----CCCSSEEEEEECCTTCS
T ss_pred CCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC--EEEec----CCCCceEEEEecCCCCC
Confidence 87531 2222211 2 3444567756666555432 5888887 333 11111 12234566677777888
Q ss_pred eEEEEeee
Q psy1644 369 WLLLIGIS 376 (923)
Q Consensus 369 W~~LvGI~ 376 (923)
++++..-+
T Consensus 393 ~l~~~~ss 400 (710)
T 2xdw_A 393 EIFYQFTS 400 (710)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 87765433
No 161
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=60.23 E-value=1.1e+02 Score=32.09 Aligned_cols=96 Identities=8% Similarity=0.089 Sum_probs=57.6
Q ss_pred CCcceeEEeccccceEEEEee---eeeEEEEecccceeeeeccc-----------CCCcEEEeeccCCCcceEEEecC-C
Q psy1644 62 NDFPVAMQVSAKYDVVYLITK---FGYIHVYDIETATCIYMNRI-----------SSDTIFVTAPHEATGGIIGLTNV-G 126 (923)
Q Consensus 62 ~DFPvamqiS~k~G~iyliTK---~G~lhl~Dlet~t~iy~~rI-----------S~~~if~ta~~~~t~Gil~vn~~-G 126 (923)
..||-.|.++.. |.+|+-|- .+.|+++|++||..+-.-.+ +++.+++++..+ +-+..++.. +
T Consensus 20 ~~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~--~~v~viD~~t~ 96 (266)
T 2iwa_A 20 YAFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLK--NIGFIYDRRTL 96 (266)
T ss_dssp TCCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTC--SEEEEEETTTT
T ss_pred CCCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecC--CEEEEEECCCC
Confidence 459999999977 89999986 47999999999998765322 235666666443 333334432 2
Q ss_pred cceeeeeee-----ceeecccceeEEEecccccceEEEEecCC
Q psy1644 127 INVGSVSFN-----TLTMESDKFICVREKIAESAQVVIIDMND 164 (923)
Q Consensus 127 ~~~~si~~~-----t~tm~sdk~ic~~~~~~~~~~vviid~~~ 164 (923)
--+..|.+. .++-.+.+.+ +-+ .++.|.+||...
T Consensus 97 ~v~~~i~~g~~~g~glt~Dg~~l~-vs~---gs~~l~viD~~t 135 (266)
T 2iwa_A 97 SNIKNFTHQMKDGWGLATDGKILY-GSD---GTSILYEIDPHT 135 (266)
T ss_dssp EEEEEEECCSSSCCEEEECSSSEE-EEC---SSSEEEEECTTT
T ss_pred cEEEEEECCCCCeEEEEECCCEEE-EEC---CCCeEEEEECCC
Confidence 223344433 2333233333 222 246777777644
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=57.98 E-value=40 Score=37.98 Aligned_cols=133 Identities=13% Similarity=0.238 Sum_probs=76.4
Q ss_pred ceEEEEECCCCCCCc--ccc----cCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEE
Q psy1644 243 AQVVIIDMNDPTNPI--RRP----ISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFW 316 (923)
Q Consensus 243 ~qVvIVDL~n~~~v~--Rrp----i~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfW 316 (923)
..|.++|+....... ..+ ....+.-..|..+.||.-......-+.....+|.+||+++.+.+....+.+.+..-
T Consensus 36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~ 115 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYL 115 (719)
T ss_dssp SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCE
T ss_pred CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccc
Confidence 368888877654211 111 11346668899998887621000000001258999999988765445556677777
Q ss_pred EeccC-CeEEEEecCeEEEEeccCCCCchhhh-hcccC--CCC-----------CeeEeeeeCCCCCeEEEEeee
Q psy1644 317 KWISP-NTLALVTETSVYHWSMEGDSTPEKMF-DRHST--LNG-----------CQIINYRTDPKQTWLLLIGIS 376 (923)
Q Consensus 317 kWis~-~tLglVT~taVYHWsi~g~s~P~K~F-dR~~~--L~~-----------~QIInYr~d~~~kW~~LvGI~ 376 (923)
.|=-+ +.||.+.+..||.|++.+... ..+. +-+.. +++ .......-++|+++++.....
T Consensus 116 ~~SPDG~~la~~~~~~i~~~~~~~g~~-~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d 189 (719)
T 1z68_A 116 CWSPVGSKLAYVYQNNIYLKQRPGDPP-FQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN 189 (719)
T ss_dssp EECSSTTCEEEEETTEEEEESSTTSCC-EECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred eECCCCCEEEEEECCeEEEEeCCCCCc-EEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence 77544 479999999999999964321 1121 11110 000 011256778889988776543
No 163
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=56.26 E-value=48 Score=31.21 Aligned_cols=51 Identities=10% Similarity=0.134 Sum_probs=27.7
Q ss_pred HHHHHHHhcChhHHHHHHHHhC---CCccHHHHHHHH----H-hcCCchhhHHHHhhhc
Q psy1644 466 VIQSFAETGQFQKIVLYAKKVG---YSPDYVFLLRNV----M-RVNPDQGVGFAQMLVQ 516 (923)
Q Consensus 466 Vi~clae~Gqfdkiv~Y~~~vg---ytpDy~~LL~~i----~-~~nP~~a~efA~~L~~ 516 (923)
...++.++|++++++.+.++.- ..|+.......+ . .-++++|.+......+
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5566777888888888777652 344322222221 1 1256666665554443
No 164
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=55.18 E-value=2.6e+02 Score=31.17 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=28.6
Q ss_pred cceeEEeccccceEEEEeeeeeEEEEecccceeee
Q psy1644 64 FPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIY 98 (923)
Q Consensus 64 FPvamqiS~k~G~iyliTK~G~lhl~Dlet~t~iy 98 (923)
--.++..|+.-..|+.-+..|.|++||++++.+..
T Consensus 326 ~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 326 AITALSSSADGKTLFSADAEGHINSWDISTGISNR 360 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee
Confidence 34567778777788888889999999999998764
No 165
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=54.99 E-value=1.5e+02 Score=33.72 Aligned_cols=142 Identities=11% Similarity=0.129 Sum_probs=80.9
Q ss_pred eecceEEEEEeccCC-CceEEEEECCCCCC-Cccccc--------CccccccCCCccEEEEeccCCCCCCCCCCCeEEEE
Q psy1644 227 MESDKFICVREKIAE-SAQVVIIDMNDPTN-PIRRPI--------SADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIF 296 (923)
Q Consensus 227 mESDkyICVRE~~~~-~~qVvIVDL~n~~~-v~Rrpi--------~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIF 296 (923)
-.++++.-++...+. ...+...|...+.. +.-.|- ...+.-..|..+.||.-.... ...-.+|.+|
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~----G~~~~~i~v~ 152 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPN----AADEAVLHVI 152 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEET----TCSCCEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCC----CCceEEEEEE
Confidence 456665555554432 33556666543321 111111 123456779989888763211 0112589999
Q ss_pred eccccccc-ccccCCCce--eEEEeccC-CeEEEEecCe--------------EEEEeccCC-CCchhhhhcccCCCCCe
Q psy1644 297 NIEMKSKM-KAHPMTDDV--VFWKWISP-NTLALVTETS--------------VYHWSMEGD-STPEKMFDRHSTLNGCQ 357 (923)
Q Consensus 297 Nle~K~KL-Ks~~m~E~V--vfWkWis~-~tLglVT~ta--------------VYHWsi~g~-s~P~K~FdR~~~L~~~Q 357 (923)
|+++++.+ ..+ + +.+ .--.|-.+ +.|+.++... ||.|++++. +..+.+|.... ....
T Consensus 153 dl~tg~~~~~~~-~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~--~~~~ 228 (695)
T 2bkl_A 153 DVDSGEWSKVDV-I-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG--DPTT 228 (695)
T ss_dssp ETTTCCBCSSCC-B-SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC--CTTC
T ss_pred ECCCCCCcCCcc-c-CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCC--CCEE
Confidence 99998876 221 2 122 22357655 4677776432 999999754 34455664321 1135
Q ss_pred eEeeeeCCCCCeEEEEeee
Q psy1644 358 IINYRTDPKQTWLLLIGIS 376 (923)
Q Consensus 358 IInYr~d~~~kW~~LvGI~ 376 (923)
+.+...++|++|+++..-.
T Consensus 229 ~~~~~~SpDG~~l~~~~~~ 247 (695)
T 2bkl_A 229 FLQSDLSRDGKYLFVYILR 247 (695)
T ss_dssp EEEEEECTTSCCEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEeC
Confidence 7788899999999876543
No 166
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=54.98 E-value=1.9e+02 Score=29.47 Aligned_cols=29 Identities=3% Similarity=-0.129 Sum_probs=19.6
Q ss_pred eEEeccccceEEEEeeeeeEEEEecccce
Q psy1644 67 AMQVSAKYDVVYLITKFGYIHVYDIETAT 95 (923)
Q Consensus 67 amqiS~k~G~iyliTK~G~lhl~Dlet~t 95 (923)
++..|+.-..|..-+..|.+.|||++++.
T Consensus 66 ~~~~sp~g~~l~s~s~D~~v~iw~~~~~~ 94 (345)
T 3fm0_A 66 KVAWSPCGNYLASASFDATTCIWKKNQDD 94 (345)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEECCC-
T ss_pred EEEECCCCCEEEEEECCCcEEEEEccCCC
Confidence 34444444456666778999999998875
No 167
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=54.64 E-value=22 Score=40.56 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=26.5
Q ss_pred cEEEEEeccceEEEEecCCcceeeeecccC
Q psy1644 735 DVVYLITKFGYIHVYDIETATCIYMNRISS 764 (923)
Q Consensus 735 GvIyvITK~GflhlyDleTgt~Iy~nRIS~ 764 (923)
.++|+.+|.|++|++|.+||+.+.+.++..
T Consensus 317 ~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~ 346 (571)
T 2ad6_A 317 PLLSHIDRNGILYTLNRENGNLIVAEKVDP 346 (571)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred EEEEEeCCCcEEEEEECCCCCEEeeecccC
Confidence 378889999999999999999999887654
No 168
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=54.30 E-value=1.6e+02 Score=28.62 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=28.2
Q ss_pred CcceeEEeccccceEEEE--------eeeeeEEEEecccceee
Q psy1644 63 DFPVAMQVSAKYDVVYLI--------TKFGYIHVYDIETATCI 97 (923)
Q Consensus 63 DFPvamqiS~k~G~iyli--------TK~G~lhl~Dlet~t~i 97 (923)
.+|-++.++ ..|-+|+. |..|.|++||..+|...
T Consensus 18 ~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 59 (314)
T 1pjx_A 18 PGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT 59 (314)
T ss_dssp TTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEE
T ss_pred CCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE
Confidence 467788888 67888888 88899999999888764
No 169
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=53.64 E-value=24 Score=34.85 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=12.0
Q ss_pred ccEEEEEeccceEEEEecCCcceee
Q psy1644 734 YDVVYLITKFGYIHVYDIETATCIY 758 (923)
Q Consensus 734 yGvIyvITK~GflhlyDleTgt~Iy 758 (923)
.|.+|+-|..|.|+.||.. |..+.
T Consensus 147 ~g~l~vgt~~~~l~~~d~~-g~~~~ 170 (330)
T 3hxj_A 147 DGTIYVGSNDNYLYAINPD-GTEKW 170 (330)
T ss_dssp TSCEEEECTTSEEEEECTT-SCEEE
T ss_pred CCEEEEEcCCCEEEEECCC-CCEeE
Confidence 4445555555555555555 44443
No 170
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=52.49 E-value=52 Score=37.85 Aligned_cols=103 Identities=10% Similarity=0.145 Sum_probs=65.1
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCce--eEEEeccCCeEEEEec-------------
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDV--VFWKWISPNTLALVTE------------- 329 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~V--vfWkWis~~tLglVT~------------- 329 (923)
+.-..|..+.||.-..-. .....+|.+||+++++.+.... +.+ .--.|-.++.|+.++.
T Consensus 167 ~~~~SPDG~~la~~~~~~----G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~ 240 (741)
T 1yr2_A 167 AWAASDDGRLLAYSVQDG----GSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALN 240 (741)
T ss_dssp EEEECTTSSEEEEEEEET----TCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTTSEEEEEECCCC--------CC
T ss_pred eEEECCCCCEEEEEEcCC----CCceEEEEEEECCCCCCCCccC--CCceeccEEEECCCEEEEEEecCcccccccccCC
Confidence 456778888888763210 0011479999999988765421 122 2235876678888763
Q ss_pred --CeEEEEeccCC-CCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEee
Q psy1644 330 --TSVYHWSMEGD-STPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGI 375 (923)
Q Consensus 330 --taVYHWsi~g~-s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI 375 (923)
..||.|+++++ +..+.+|+.... ...+.+...++|++|++...-
T Consensus 241 ~~~~v~~~~lgt~~~~~~lv~~~~~~--~~~~~~~~~SpDG~~l~~~~~ 287 (741)
T 1yr2_A 241 YNQTVWLHRLGTPQSADQPVFATPEL--PKRGHGASVSSDGRWVVITSS 287 (741)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTC--TTCEEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEEECCCCchhCEEEeccCCC--CeEEEEEEECCCCCEEEEEEE
Confidence 34999999653 334556654321 124778888999999888764
No 171
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=50.92 E-value=2e+02 Score=32.11 Aligned_cols=119 Identities=10% Similarity=0.089 Sum_probs=67.0
Q ss_pred ceEEEEECCCCCCC-cccccC----ccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccC-CCceeE-
Q psy1644 243 AQVVIIDMNDPTNP-IRRPIS----ADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM-TDDVVF- 315 (923)
Q Consensus 243 ~qVvIVDL~n~~~v-~Rrpi~----ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m-~E~Vvf- 315 (923)
.++.++|+...... ....-. ..++..+|..+.||.- ....|.+|++++.+..+-..- .++++|
T Consensus 91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~----------~~~~i~~~~~~~g~~~~~~~~~~~~~~~~ 160 (723)
T 1xfd_A 91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI----------FENNIYYCAHVGKQAIRVVSTGKEGVIYN 160 (723)
T ss_dssp SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE----------ETTEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEE----------ECCeEEEEECCCCceEEEecCCCCCceEC
Confidence 57888898876531 111111 2356788998888876 235899999987654332222 223322
Q ss_pred -----------------EEeccC-CeEEEEecC-----------------------------------eEEEEeccCCCC
Q psy1644 316 -----------------WKWISP-NTLALVTET-----------------------------------SVYHWSMEGDST 342 (923)
Q Consensus 316 -----------------WkWis~-~tLglVT~t-----------------------------------aVYHWsi~g~s~ 342 (923)
-.|-.+ +.|+..... .++.|++.+...
T Consensus 161 g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~ 240 (723)
T 1xfd_A 161 GLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH 240 (723)
T ss_dssp EECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC
T ss_pred cccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce
Confidence 334322 357776532 788998865443
Q ss_pred chhhhhcccCCC--CCeeEeeeeCCCCCeEEE
Q psy1644 343 PEKMFDRHSTLN--GCQIINYRTDPKQTWLLL 372 (923)
Q Consensus 343 P~K~FdR~~~L~--~~QIInYr~d~~~kW~~L 372 (923)
+.. +..+..+. ...+....-++|++|++.
T Consensus 241 ~~~-l~~~~~~~~~~~~~~~~~~SpDg~~l~~ 271 (723)
T 1xfd_A 241 DLE-MMPPDDPRMREYYITMVKWATSTKVAVT 271 (723)
T ss_dssp CEE-CCCCCCGGGSSEEEEEEEESSSSEEEEE
T ss_pred eEE-eeCCccCCCccceeEEEEEeCCCeEEEE
Confidence 222 22222221 345667778889987643
No 172
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=50.88 E-value=40 Score=36.32 Aligned_cols=112 Identities=9% Similarity=-0.103 Sum_probs=58.0
Q ss_pred HHHHHHHhcChhHHHHHHHHhC-CCcc----HHHHHHHHHhc-CCchhhHHHHhhhcC----C-CCC--cCccc------
Q psy1644 466 VIQSFAETGQFQKIVLYAKKVG-YSPD----YVFLLRNVMRV-NPDQGVGFAQMLVQD----D-EPL--ADINQ------ 526 (923)
Q Consensus 466 Vi~clae~Gqfdkiv~Y~~~vg-ytpD----y~~LL~~i~~~-nP~~a~efA~~L~~~----~-~pl--~di~~------ 526 (923)
.+.++++.|++++++.+.++.- ..|+ |..+.....+. +.++|.++....... + .|- .+.-.
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 5667778888888888776641 2232 33333333333 666676666544432 1 111 00000
Q ss_pred -----cchhhhhhhcccccccCCcchhhHHHHHHHhcCChhhhHHhhhcCCccChH
Q psy1644 527 -----SYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAE 577 (923)
Q Consensus 527 -----~~egLyy~Lgsivn~s~d~dVhfKYIeAA~k~gq~~EvERicresn~Ydpe 577 (923)
.-|.+-+|-..+-...+++++.+....+..+.|+++|.++..++.--.+|+
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 011111111111112345677778888888889988887776654333443
No 173
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=50.79 E-value=78 Score=32.09 Aligned_cols=75 Identities=8% Similarity=-0.032 Sum_probs=52.5
Q ss_pred ceeeeeeeeccccccEEEEEeccceEEEEecCCcceeeeecccCCceEEeeccCCCCcEEEEcCCCeEEEEEecC
Q psy1644 721 KYIEIYVQKVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSVSVDE 795 (923)
Q Consensus 721 ~~~~i~~~qvS~KyGvIyvITK~GflhlyDleTgt~Iy~nRIS~dtIFvta~~~~t~Gii~VNrkGqVL~V~Ide 795 (923)
|--.|....+++.-..+.--...|.|.+||+.||+++..-+--.+.|...+-...+.-++....+|.|.--.+..
T Consensus 75 h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~ 149 (343)
T 2xzm_R 75 HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149 (343)
T ss_dssp CSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence 444566566788777888888899999999999999876554556666555544444455566777776666543
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=50.71 E-value=3.3e+02 Score=31.10 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=41.4
Q ss_pred ccEEEEEecCCCCCCCCCcccceeeeecCCCccCCcceeEEecc----ccceEEEEeee-eeEEEEecccceeeee
Q psy1644 29 GGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSA----KYDVVYLITKF-GYIHVYDIETATCIYM 99 (923)
Q Consensus 29 ~gkLhiiEig~~~~g~~~f~kK~vd~~Fppe~~~DFPvamqiS~----k~G~iyliTK~-G~lhl~Dlet~t~iy~ 99 (923)
.|++.++++...+ + +....+ + .+..|..|.+|. .-..+|+.... |.+.|+|..|..++-.
T Consensus 217 dg~V~viD~~~~t-~-----~~v~~i--~---~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~ 281 (567)
T 1qks_A 217 DGKVNMIDLWMKE-P-----TTVAEI--K---IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI 281 (567)
T ss_dssp TSEEEEEETTSSS-C-----CEEEEE--E---CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred CCeEEEEECCCCC-C-----cEeEEE--e---cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEE
Confidence 4689999884111 1 111222 2 266799999994 55589988877 8999999999888753
No 175
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=50.13 E-value=27 Score=40.52 Aligned_cols=54 Identities=15% Similarity=0.369 Sum_probs=43.6
Q ss_pred cccEEEEEeccceEEEEecCCcceeeeeccc---------------------CCceEEeeccCCCCcEEEEc-CCCeEE
Q psy1644 733 KYDVVYLITKFGYIHVYDIETATCIYMNRIS---------------------SDTIFVTAPHEATGGIIGVN-RKGQVL 789 (923)
Q Consensus 733 KyGvIyvITK~GflhlyDleTgt~Iy~nRIS---------------------~dtIFvta~~~~t~Gii~VN-rkGqVL 789 (923)
--|.||+.|..|.|+-+|.+||+.+.+-+.. ++.||+++. .+.+++++ +.|+++
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---DGRLIALDAKTGKAI 140 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT---TSEEEEEETTTCCEE
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC---CCEEEEEECCCCCEe
Confidence 4689999999999999999999999887542 456787764 46788898 568876
No 176
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=48.92 E-value=70 Score=36.71 Aligned_cols=106 Identities=8% Similarity=0.163 Sum_probs=66.2
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEeccCCeEEEEecC--------------
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTET-------------- 330 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis~~tLglVT~t-------------- 330 (923)
+.-..|..+.||.--.. +...-.+|.|+|+++++.+..+.-.-...--.|.+.++|+.++..
T Consensus 133 ~~~~SpDg~~lAy~~~~----~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~ 208 (693)
T 3iuj_A 133 QLSFSRDGRILAYSLSL----AGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQH 208 (693)
T ss_dssp EEEECTTSSEEEEEEEC----SSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEETTTEEEEEESSCCC-------CCCC
T ss_pred EEEECCCCCEEEEEEec----CCCceEEEEEEECCCCCCCccccCCceeccEEEeCCCEEEEEEecCcccccccccCCCc
Confidence 45678999988864211 101125899999999986654211100011134488899999865
Q ss_pred eEEEEeccCC-CCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEee
Q psy1644 331 SVYHWSMEGD-STPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGI 375 (923)
Q Consensus 331 aVYHWsi~g~-s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI 375 (923)
.||.|+++.+ +.++.+|+.... .....++...++|++|+++..-
T Consensus 209 ~v~~~~lgt~~~~~~~v~~~~~~-~~~~~~~~~~SpDg~~l~~~~~ 253 (693)
T 3iuj_A 209 KVYFHRLGTAQEDDRLVFGAIPA-QHHRYVGATVTEDDRFLLISAA 253 (693)
T ss_dssp EEEEEETTSCGGGCEEEESCSGG-GCCSEEEEEECTTSCEEEEEEE
T ss_pred EEEEEECCCCcccceEEEecCCC-CCeEEEEEEEcCCCCEEEEEEc
Confidence 3999999653 566777765320 1223567778999999877543
No 177
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=48.85 E-value=26 Score=40.65 Aligned_cols=55 Identities=18% Similarity=0.357 Sum_probs=43.5
Q ss_pred cccEEEEEeccceEEEEecCCcceeeeeccc---------------------CCceEEeeccCCCCcEEEEcC-CCeEEE
Q psy1644 733 KYDVVYLITKFGYIHVYDIETATCIYMNRIS---------------------SDTIFVTAPHEATGGIIGVNR-KGQVLS 790 (923)
Q Consensus 733 KyGvIyvITK~GflhlyDleTgt~Iy~nRIS---------------------~dtIFvta~~~~t~Gii~VNr-kGqVL~ 790 (923)
--|.||+.|..|.|+-+|.+||+.+.+-+.. ++.||+++. .+.+++++. .|+++-
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---DGRLIALDAATGKEVW 152 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT---TSEEEEEETTTCCEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC---CCEEEEEECCCCCEEe
Confidence 3689999999999999999999999876643 456777754 367888884 688763
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=48.78 E-value=67 Score=31.99 Aligned_cols=122 Identities=16% Similarity=0.291 Sum_probs=65.9
Q ss_pred CCceEEEEECCCCCC--CcccccCccccccCCCccEEEEeccCCCC--------------CCC----CCCCeEEEEeccc
Q psy1644 241 ESAQVVIIDMNDPTN--PIRRPISADSAIMNPASKVIALKGKAGND--------------NNP----NAPKTLQIFNIEM 300 (923)
Q Consensus 241 ~~~qVvIVDL~n~~~--v~Rrpi~ADSAIMnP~~~IIALra~~~~~--------------n~~----~~g~~LQIFNle~ 300 (923)
+..+|.++|+..... .+.-+- ..+....|..+.||.-+.-..+ ++. .....|.++++++
T Consensus 83 ~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 161 (347)
T 2gop_A 83 KVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES 161 (347)
T ss_dssp TEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred CcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence 345788888875431 111121 3455567888877765311000 000 0125788899987
Q ss_pred ccccccccCCCceeEEEeccCCeEEEEe-----------cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCe
Q psy1644 301 KSKMKAHPMTDDVVFWKWISPNTLALVT-----------ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTW 369 (923)
Q Consensus 301 K~KLKs~~m~E~VvfWkWis~~tLglVT-----------~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW 369 (923)
.+.++....+ .+.-..|-.+. +++++ ...+|.|+ . ..+..++.. ..+.. .++|++|
T Consensus 162 ~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~--~~~~~l~~~------~~~~~--~spdg~~ 228 (347)
T 2gop_A 162 EEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-D--GKEEKMFEK------VSFYA--VDSDGER 228 (347)
T ss_dssp TEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-T--TEEEEEEEE------ESEEE--EEECSSC
T ss_pred CeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC-C--CceEEeccC------cceee--ECCCCCE
Confidence 6543433333 66667777666 77766 23577776 3 234444432 12222 2789999
Q ss_pred EEEEeee
Q psy1644 370 LLLIGIS 376 (923)
Q Consensus 370 ~~LvGI~ 376 (923)
++..+-.
T Consensus 229 l~~~~~~ 235 (347)
T 2gop_A 229 ILLYGKP 235 (347)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 8877643
No 179
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=48.56 E-value=35 Score=38.39 Aligned_cols=85 Identities=14% Similarity=0.235 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcChhHHHHHH---HHhCCCcc---HHHHHHHHHhcC------Cc----hhhHHHHhhhcCC-CCCcCcc
Q psy1644 463 LAQVIQSFAETGQFQKIVLYA---KKVGYSPD---YVFLLRNVMRVN------PD----QGVGFAQMLVQDD-EPLADIN 525 (923)
Q Consensus 463 L~QVi~clae~Gqfdkiv~Y~---~~vgytpD---y~~LL~~i~~~n------P~----~a~efA~~L~~~~-~pl~di~ 525 (923)
+..+|..+|+.|++++++..- ++.|..|| |..||....+.. +. .|.++-..+...+ .| |
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P--d-- 104 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP--N-- 104 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC--C--
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC--C--
Confidence 344678899999999988764 56799998 778887644321 22 2333322222222 11 1
Q ss_pred ccchhhhhhhcccccccCCcchhhHHHHHHHhcCChhhhHHhhhc
Q psy1644 526 QSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRE 570 (923)
Q Consensus 526 ~~~egLyy~Lgsivn~s~d~dVhfKYIeAA~k~gq~~EvERicre 570 (923)
.-..=-.|.+.++.|++.|.+++-++
T Consensus 105 -------------------~~tyn~lI~~~~~~g~~~~A~~l~~~ 130 (501)
T 4g26_A 105 -------------------EATFTNGARLAVAKDDPEMAFDMVKQ 130 (501)
T ss_dssp -------------------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11112358899999999988776543
No 180
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=47.90 E-value=70 Score=30.95 Aligned_cols=32 Identities=9% Similarity=-0.011 Sum_probs=19.5
Q ss_pred hcchhHHHHHHHHHHHHhhcccchhhhHHHHhH
Q psy1644 683 RNNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLY 715 (923)
Q Consensus 683 RnrL~kll~p~LE~~~~~g~q~~~v~nalakiy 715 (923)
.++. .-=..+++.-+.....++..+..|+..+
T Consensus 283 ~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 283 MGNF-ENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HTCH-HHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred hccH-HHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 3444 3344555555556666777777777766
No 181
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=47.57 E-value=33 Score=39.32 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=27.4
Q ss_pred ccEEEEEeccceEEEEecCCcceeeeecccC
Q psy1644 734 YDVVYLITKFGYIHVYDIETATCIYMNRISS 764 (923)
Q Consensus 734 yGvIyvITK~GflhlyDleTgt~Iy~nRIS~ 764 (923)
..++|..+|.|++|++|.+||+.+.+.++..
T Consensus 336 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~ 366 (582)
T 1flg_A 336 VKATAHADRNGFFYVVDRSNGKLQNAFPFVD 366 (582)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSS
T ss_pred EEEEEEECCCceEEEEECCCCCEeccccccc
Confidence 4589999999999999999999999877653
No 182
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=46.77 E-value=39 Score=33.33 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=35.8
Q ss_pred cccEEEEEeccceEEEEecCCcceeeeecccC----------C-ceEEeeccCCCCcEEEEcCCCeEEE
Q psy1644 733 KYDVVYLITKFGYIHVYDIETATCIYMNRISS----------D-TIFVTAPHEATGGIIGVNRKGQVLS 790 (923)
Q Consensus 733 KyGvIyvITK~GflhlyDleTgt~Iy~nRIS~----------d-tIFvta~~~~t~Gii~VNrkGqVL~ 790 (923)
+.|.+|+-| |-|+.|| .+|..++...... + .|++++. .+|+++++++|..+.
T Consensus 186 ~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~---~~gl~~~~~~g~~~~ 248 (330)
T 3hxj_A 186 KDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSL---DGHLYAINPDGTEKW 248 (330)
T ss_dssp TTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEET---TTEEEEECTTSCEEE
T ss_pred CCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcC---CCeEEEECCCCCEeE
Confidence 567899988 8889999 7888777654332 2 5555543 467777777776654
No 183
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=46.55 E-value=26 Score=40.86 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=31.5
Q ss_pred eccccccEEEEEeccceEEEEecCCcceeeeeccc
Q psy1644 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRIS 763 (923)
Q Consensus 729 qvS~KyGvIyvITK~GflhlyDleTgt~Iy~nRIS 763 (923)
-++..-|+||+-|..|+|+.||.+||+.|.+-+.-
T Consensus 481 ~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 481 TLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 35667899999999999999999999999988865
No 184
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=46.35 E-value=6.9 Score=28.92 Aligned_cols=10 Identities=60% Similarity=1.222 Sum_probs=8.4
Q ss_pred ccceeEEEec
Q psy1644 141 SDKFICVREK 150 (923)
Q Consensus 141 sdk~ic~~~~ 150 (923)
..||||+||+
T Consensus 23 nskyiccrek 32 (32)
T 1ews_A 23 NSKYICCREK 32 (32)
T ss_dssp SCSEEEEECC
T ss_pred cceeEEeccC
Confidence 4599999996
No 185
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=46.04 E-value=43 Score=32.44 Aligned_cols=83 Identities=8% Similarity=0.060 Sum_probs=49.1
Q ss_pred CCchHHHHHHHHHhcCCCCcccccccchhhHHH----------HHHHHHHhcChhHHHHHHHHhC-CCc---c-HHHHHH
Q psy1644 433 QTSPLLQYFGILLDHGKLNKHESLELCRPVLAQ----------VIQSFAETGQFQKIVLYAKKVG-YSP---D-YVFLLR 497 (923)
Q Consensus 433 q~sPLL~YF~~LL~~g~LN~~ESlEL~rpVL~Q----------Vi~clae~Gqfdkiv~Y~~~vg-ytp---D-y~~LL~ 497 (923)
.+.-++..-..++..| +-.+.+++.+-++.. .+.|+.+.|++++++.+.++.- ..| + |..+-.
T Consensus 21 ~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNC--DFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 3445555555666665 344555555555554 6688899999999999887752 233 2 222222
Q ss_pred HHHhc--CCchhhHHHHhhhcC
Q psy1644 498 NVMRV--NPDQGVGFAQMLVQD 517 (923)
Q Consensus 498 ~i~~~--nP~~a~efA~~L~~~ 517 (923)
..... ++++|.+......+.
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~ 120 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTL 120 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTT
T ss_pred HHHHhhhhHHHHHHHHHHHHHh
Confidence 22333 456777776665554
No 186
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=45.67 E-value=26 Score=37.02 Aligned_cols=57 Identities=12% Similarity=0.209 Sum_probs=36.8
Q ss_pred ccEEEEEeccceEEEEecCCcceeeeecccCCceEEeeccCCCCcEEEE-cCCCeEEEEEe
Q psy1644 734 YDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGV-NRKGQVLSVSV 793 (923)
Q Consensus 734 yGvIyvITK~GflhlyDleTgt~Iy~nRIS~dtIFvta~~~~t~Gii~V-NrkGqVL~V~I 793 (923)
-|.||+-|..|.|+.||..||+.+.+-+. +.+. +++....+.++.+ ..+|.|..+..
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~-s~p~~~~g~~~v~~s~dg~l~a~d~ 66 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVL-QVPTHVEEPAFLPDPNDGSLYTLGS 66 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSC-CCC-----CCEEECTTTCCEEEC--
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCce-ecceEcCCCEEEEeCCCCEEEEEEC
Confidence 47899999999999999999999988776 3332 2222222335554 46676666555
No 187
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=45.32 E-value=41 Score=31.15 Aligned_cols=111 Identities=9% Similarity=0.049 Sum_probs=54.2
Q ss_pred HHHHHHHhcChhHHHHHHHHhC-CCc---cHHHHHHH-HH-hcCCchhhHHHHhhhcCCCCCcC----ccc-------cc
Q psy1644 466 VIQSFAETGQFQKIVLYAKKVG-YSP---DYVFLLRN-VM-RVNPDQGVGFAQMLVQDDEPLAD----INQ-------SY 528 (923)
Q Consensus 466 Vi~clae~Gqfdkiv~Y~~~vg-ytp---Dy~~LL~~-i~-~~nP~~a~efA~~L~~~~~pl~d----i~~-------~~ 528 (923)
...++.+.|++++++.+.++.= ..| +....+-. .. .-++++|.+......+..+...+ +.. -.
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 5667778888888888877641 223 21111111 12 22566666655544432211000 000 01
Q ss_pred hhhhhhhcccccccCCcchhhHHHHHHHhcCChhhhHHhhhcCCccCh
Q psy1644 529 EGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNA 576 (923)
Q Consensus 529 egLyy~Lgsivn~s~d~dVhfKYIeAA~k~gq~~EvERicresn~Ydp 576 (923)
+.+-+|--.+-...+++++.+.+..+..+.|++.+.....++.--.+|
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 112222222222234566677777777778888877776665433333
No 188
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=45.25 E-value=29 Score=33.62 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhcCChhHHHHHHHhcccCChHH
Q psy1644 829 VRKFNLLFTNGQYSEAAKAACKTGQIKEVERICRESNCYNAER 871 (923)
Q Consensus 829 ~~qFn~l~~~G~y~eAAk~A~ktg~i~e~eri~r~~~~y~~~~ 871 (923)
..+-.+|+++|+|.||...|...++..-|+..|.. |||..
T Consensus 4 ~~~I~~Ll~~g~~eeAf~~aL~ssd~~lv~~lc~~---~dp~~ 43 (139)
T 2vxg_A 4 GDSIKQLLMAGQINKAFHQALLANDLGLVEFTLRH---TDSNQ 43 (139)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHH---SCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhCcHHHHHHHHHc---CCHHH
Confidence 45688999999999999999999999999999965 44554
No 189
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=44.77 E-value=1.1e+02 Score=36.75 Aligned_cols=107 Identities=15% Similarity=0.234 Sum_probs=73.6
Q ss_pred cccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEeccCCeEEEEe-cCeEEEEeccCCCCch
Q psy1644 266 AIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVT-ETSVYHWSMEGDSTPE 344 (923)
Q Consensus 266 AIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis~~tLglVT-~taVYHWsi~g~s~P~ 344 (923)
...+|..+.||.=+ ...++.||+.+..+.+..+.-...|..-.|...+.|+-+. +..|..|++... .+.
T Consensus 23 lafspdg~~lAsgs---------~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~-~~~ 92 (902)
T 2oaj_A 23 AAFDFTQNLLAIAT---------VTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQ-KVL 92 (902)
T ss_dssp EEEETTTTEEEEEE---------TTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTC-SEE
T ss_pred EEECCCCCEEEEEe---------CCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCC-cEE
Confidence 34678888888852 3468999999887766555556778888888755466554 458999999643 233
Q ss_pred hhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecccccc
Q psy1644 345 KMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERK 394 (923)
Q Consensus 345 K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~ 394 (923)
..|. | ...|..-..+++.+|++.-+ -.|.+.+|.++.+
T Consensus 93 ~~~~-~----~~~V~~v~~sp~g~~l~sgs-------~dg~V~lwd~~~~ 130 (902)
T 2oaj_A 93 TTVF-V----PGKITSIDTDASLDWMLIGL-------QNGSMIVYDIDRD 130 (902)
T ss_dssp EEEE-C----SSCEEEEECCTTCSEEEEEE-------TTSCEEEEETTTT
T ss_pred EEEc-C----CCCEEEEEECCCCCEEEEEc-------CCCcEEEEECCCC
Confidence 3332 2 23688888899999976532 3678888887654
No 190
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=44.69 E-value=41 Score=36.60 Aligned_cols=62 Identities=13% Similarity=0.150 Sum_probs=45.7
Q ss_pred cccEEEEEeccceEEEEecCCcceeeeecccC-CceEEee-ccC-CCCcEEEE--cCCCeEEEEEec
Q psy1644 733 KYDVVYLITKFGYIHVYDIETATCIYMNRISS-DTIFVTA-PHE-ATGGIIGV--NRKGQVLSVSVD 794 (923)
Q Consensus 733 KyGvIyvITK~GflhlyDleTgt~Iy~nRIS~-dtIFvta-~~~-~t~Gii~V--NrkGqVL~V~Id 794 (923)
..|+||+-|-.|.||=+|.+||+.+.+-..+. .++..+. +.. .+++++.+ ..+|+|+.+..+
T Consensus 9 ~~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~ 75 (339)
T 2be1_A 9 LSDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAH 75 (339)
T ss_dssp EEEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETT
T ss_pred eCCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECC
Confidence 46899999999999999999999999988772 2333221 211 24577777 479999887754
No 191
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=43.62 E-value=31 Score=30.52 Aligned_cols=20 Identities=5% Similarity=0.001 Sum_probs=14.5
Q ss_pred HHHHHHhcChhHHHHHHHHh
Q psy1644 467 IQSFAETGQFQKIVLYAKKV 486 (923)
Q Consensus 467 i~clae~Gqfdkiv~Y~~~v 486 (923)
..++.++|++++++.+.++.
T Consensus 25 a~~~~~~g~~~~A~~~~~~a 44 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQAL 44 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHH
Confidence 45677788888888776653
No 192
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=42.95 E-value=2.6e+02 Score=32.00 Aligned_cols=112 Identities=11% Similarity=0.228 Sum_probs=64.7
Q ss_pred ceeeecc-eEEEEEeccCCCceEEEEECCCCCCCcc------cccCc--cccccCCCccEEEEeccCCCCCCCCCCCeEE
Q psy1644 224 TLTMESD-KFICVREKIAESAQVVIIDMNDPTNPIR------RPISA--DSAIMNPASKVIALKGKAGNDNNPNAPKTLQ 294 (923)
Q Consensus 224 ~lTmESD-kyICVRE~~~~~~qVvIVDL~n~~~v~R------rpi~A--DSAIMnP~~~IIALra~~~~~n~~~~g~~LQ 294 (923)
++++-+| +|+-.. ...|.+.|+.......- ....+ ++...+|..+.||.-.....--+......+.
T Consensus 21 ~~~w~~dg~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ-----ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CEEECSSSEEEEEE-----TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred ccEECCCCcEEEEc-----CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 4555555 444432 23677777766542110 11111 1244689999888873110000000114678
Q ss_pred EEecccccccccccCCCceeEEEeccC-CeEEEEecCeEEEEeccCC
Q psy1644 295 IFNIEMKSKMKAHPMTDDVVFWKWISP-NTLALVTETSVYHWSMEGD 340 (923)
Q Consensus 295 IFNle~K~KLKs~~m~E~VvfWkWis~-~tLglVT~taVYHWsi~g~ 340 (923)
+||+++++..+-...+..+.+=.|=-+ +.||.|.+..||.|++.+.
T Consensus 96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~ 142 (740)
T 4a5s_A 96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNL 142 (740)
T ss_dssp EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTS
T ss_pred EEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCC
Confidence 999998865432233556778888433 5799999999999998653
No 193
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=42.69 E-value=94 Score=26.94 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=17.8
Q ss_pred CCcchhhHHHHHHHhcCChhhhHHhhhc
Q psy1644 543 QDQEVHFKYIQAACKTGQIKEVERICRE 570 (923)
Q Consensus 543 ~d~dVhfKYIeAA~k~gq~~EvERicre 570 (923)
+++++.+.......+.|++++..+..+.
T Consensus 142 ~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455666666667777777776665444
No 194
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=42.68 E-value=1.1e+02 Score=30.77 Aligned_cols=74 Identities=8% Similarity=-0.012 Sum_probs=47.5
Q ss_pred ceeeeeeeeccccccEEEEEeccceEEEEecCCcceeeeecccCCceEEeeccCCCCcEEEEcCCCeEEEEEec
Q psy1644 721 KYIEIYVQKVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSVSVD 794 (923)
Q Consensus 721 ~~~~i~~~qvS~KyGvIyvITK~GflhlyDleTgt~Iy~nRIS~dtIFvta~~~~t~Gii~VNrkGqVL~V~Id 794 (923)
|--.|..-.+++.-..+.-....|.|.+||++||.++..-+-..+.|...+-.....=++....+|.|.--.++
T Consensus 64 h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~ 137 (319)
T 3frx_A 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137 (319)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred CcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 44455555677777788888899999999999999886655445555544443333334444455555544443
No 195
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=41.93 E-value=2.6e+02 Score=30.89 Aligned_cols=60 Identities=10% Similarity=0.042 Sum_probs=37.8
Q ss_pred eeEEEeccC-CeEEEEecC-----------eEEEEeccCC-----CCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEee
Q psy1644 313 VVFWKWISP-NTLALVTET-----------SVYHWSMEGD-----STPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGI 375 (923)
Q Consensus 313 VvfWkWis~-~tLglVT~t-----------aVYHWsi~g~-----s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI 375 (923)
+.--.|-.+ +.|+.++.. .||.|++++. ..+..+.+.+ ...+..-..++|++|++..+-
T Consensus 132 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~SpDG~~la~~~~ 207 (662)
T 3azo_A 132 WADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDA----HRFVTGPRLSPDGRQAVWLAW 207 (662)
T ss_dssp EEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSC----SSEECCCEECTTSSEEEEEEE
T ss_pred ccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecC----CCcccCceECCCCCEEEEEEC
Confidence 334456543 578888764 7999999773 3444444111 124555678899999987764
Q ss_pred e
Q psy1644 376 S 376 (923)
Q Consensus 376 ~ 376 (923)
.
T Consensus 208 ~ 208 (662)
T 3azo_A 208 D 208 (662)
T ss_dssp C
T ss_pred C
Confidence 3
No 196
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=41.29 E-value=2.9e+02 Score=27.79 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=37.3
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccc--cccccccC-CCceeEEEeccCC-eEEEEe---cCeEEEEec
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMK--SKMKAHPM-TDDVVFWKWISPN-TLALVT---ETSVYHWSM 337 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K--~KLKs~~m-~E~VvfWkWis~~-tLglVT---~taVYHWsi 337 (923)
+...+|..+.||-=+ ...++++|++.+. +.+..+.- ...|.--.|-.+. ..-|+| +..|..|++
T Consensus 158 ~v~~~p~~~~l~s~s---------~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 158 HVIWHPSEALLASSS---------YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp EEEECSSSSEEEEEE---------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred EEEECCCCCEEEEEc---------CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 445688887777642 3468999998764 22333222 2344444454431 222343 358999998
Q ss_pred cC
Q psy1644 338 EG 339 (923)
Q Consensus 338 ~g 339 (923)
.+
T Consensus 229 ~~ 230 (330)
T 2hes_X 229 MG 230 (330)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 197
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=40.89 E-value=1.4e+02 Score=29.76 Aligned_cols=95 Identities=18% Similarity=0.228 Sum_probs=52.8
Q ss_pred eeecceEEEEEeccC-----CCceEEEEECCCCCCCcccccC-ccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecc
Q psy1644 226 TMESDKFICVREKIA-----ESAQVVIIDMNDPTNPIRRPIS-ADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIE 299 (923)
Q Consensus 226 TmESDkyICVRE~~~-----~~~qVvIVDL~n~~~v~Rrpi~-ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle 299 (923)
.+.+.+.+.++...+ ...++.++|+.... + +++. ..+....|..+.||.-..-. + .....|.+++++
T Consensus 21 ~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~-~--~~l~~~~~~~~SpDg~~la~~~~~~---~-~~~~~l~~~~~~ 93 (347)
T 2gop_A 21 RTKGELVAYVLTKANLKDNKYENTIVIENLKNNA-R--RFIENATMPRISPDGKKIAFMRANE---E-KKVSEIWVADLE 93 (347)
T ss_dssp EEETTEEEEEEEEEETTTTEEEEEEEEEETTTCC-E--EEEESCEEEEECTTSSEEEEEEEET---T-TTEEEEEEEETT
T ss_pred eECCcEEEEEEeecCcccCCccceEEEEeCCCCc-e--EEcccCCCeEECCCCCEEEEEEecc---C-CCcceEEEEECC
Confidence 334445555554321 13578899988654 1 2332 23456788887777642110 0 012357777877
Q ss_pred cccccccccCCCceeEEEec-cCCeEEEEe
Q psy1644 300 MKSKMKAHPMTDDVVFWKWI-SPNTLALVT 328 (923)
Q Consensus 300 ~K~KLKs~~m~E~VvfWkWi-s~~tLglVT 328 (923)
+.+..+-..... +..-.|- +.+.|+.+.
T Consensus 94 ~g~~~~l~~~~~-~~~~~wspdg~~l~~~~ 122 (347)
T 2gop_A 94 TLSSKKILEAKN-IRSLEWNEDSRKLLIVG 122 (347)
T ss_dssp TTEEEEEEEESE-EEEEEECTTSSEEEEEE
T ss_pred CCceEEEEcCCC-ccceeECCCCCEEEEEE
Confidence 654433333344 6677886 456788886
No 198
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=40.78 E-value=3e+02 Score=27.70 Aligned_cols=117 Identities=10% Similarity=0.138 Sum_probs=67.2
Q ss_pred cccCCCccEEEEeccCCCCCCCCCCCeEEEEecccc-c---cccccc-CCCceeEEEeccCCeEEEEe--cCeEEEEecc
Q psy1644 266 AIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMK-S---KMKAHP-MTDDVVFWKWISPNTLALVT--ETSVYHWSME 338 (923)
Q Consensus 266 AIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K-~---KLKs~~-m~E~VvfWkWis~~tLglVT--~taVYHWsi~ 338 (923)
...+|..+.|+.-.. ++ .....+++|+++.+ - ++.... ......++.| +.+.|.... +..|..|++.
T Consensus 55 l~~spdg~~l~~~~~---~~--~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~ 128 (361)
T 3scy_A 55 LIPSADGKFVYSVNE---FS--KDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFPIG 128 (361)
T ss_dssp EEECTTSSEEEEEEC---CS--STTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBC
T ss_pred EEECCCCCEEEEEEc---cC--CCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeC
Confidence 356888876666521 00 02368999999875 2 333332 2456778888 666665543 4579999996
Q ss_pred CCCCchhhhhc--ccC-------CCCCeeEeeeeCCCCCeEEEEeeecccccccceeeecccccc
Q psy1644 339 GDSTPEKMFDR--HST-------LNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERK 394 (923)
Q Consensus 339 g~s~P~K~FdR--~~~-------L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~ 394 (923)
.+.....+... +.. -....+-.-..+++++|+++.+. -.+.+.+|.++..
T Consensus 129 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~------~~~~v~v~~~~~~ 187 (361)
T 3scy_A 129 QDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDL------GTDQIHKFNINPN 187 (361)
T ss_dssp TTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEET------TTTEEEEEEECTT
T ss_pred CCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeC------CCCEEEEEEEcCC
Confidence 44322222110 100 00122445677899999887653 2457888877643
No 199
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=40.13 E-value=3e+02 Score=27.54 Aligned_cols=148 Identities=11% Similarity=0.094 Sum_probs=0.0
Q ss_pred cceEEEEEeccCCCceEEEEECCCCCCCcccccCccccccCCCccEEEE-------------------------------
Q psy1644 229 SDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIAL------------------------------- 277 (923)
Q Consensus 229 SDkyICVRE~~~~~~qVvIVDL~n~~~v~Rrpi~ADSAIMnP~~~IIAL------------------------------- 277 (923)
+.+.+.++... +|.++|+.......-.....+ ..|..+.||.
T Consensus 92 g~~l~~~~~~~----~l~~~d~~~~~~~~~~~~~~~---~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 92 ERAFFYVKNEL----NLMKVDLETLEEQVIYTVDEE---WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp SSEEEEEETTT----EEEEEETTTCCEEEEEECCTT---EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred CCEEEEEEcCC----cEEEEECCCCCcEEEEecccc---cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Q ss_pred eccCCCCCCCCCCCeEEEEecccccccccccCCCceeEEEecc--CCeEEEEec-------CeEEEEeccCCCCchhhhh
Q psy1644 278 KGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWIS--PNTLALVTE-------TSVYHWSMEGDSTPEKMFD 348 (923)
Q Consensus 278 ra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m~E~VvfWkWis--~~tLglVT~-------taVYHWsi~g~s~P~K~Fd 348 (923)
. ....|.++|+++.+...-..-...+....|-. .+.|+.+++ ..+|.|++++.. +..++.
T Consensus 165 ~----------~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~ 233 (396)
T 3c5m_A 165 N----------PTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-VRKIKE 233 (396)
T ss_dssp C----------CCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-CEESSC
T ss_pred C----------CcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-eeEeec
Q ss_pred cccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeeccccccccccc
Q psy1644 349 RHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERKCSQPI 399 (923)
Q Consensus 349 R~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~~SQ~i 399 (923)
.-.+..+..-.-++|++|++.++-...... +.+.+|..+.+..+.+
T Consensus 234 ---~~~~~~~~~~~~spdg~~l~~~~~~~~~~~--~~l~~~d~~~g~~~~l 279 (396)
T 3c5m_A 234 ---HAEGESCTHEFWIPDGSAMAYVSYFKGQTD--RVIYKANPETLENEEV 279 (396)
T ss_dssp ---CCTTEEEEEEEECTTSSCEEEEEEETTTCC--EEEEEECTTTCCEEEE
T ss_pred ---cCCCccccceEECCCCCEEEEEecCCCCcc--ceEEEEECCCCCeEEe
No 200
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=39.56 E-value=50 Score=38.36 Aligned_cols=56 Identities=14% Similarity=0.155 Sum_probs=40.2
Q ss_pred ccEEEEEeccceEEEEecCCcceeeeeccc----------------CCceEEeeccC---CCCcEEEEc-CCCeEE
Q psy1644 734 YDVVYLITKFGYIHVYDIETATCIYMNRIS----------------SDTIFVTAPHE---ATGGIIGVN-RKGQVL 789 (923)
Q Consensus 734 yGvIyvITK~GflhlyDleTgt~Iy~nRIS----------------~dtIFvta~~~---~t~Gii~VN-rkGqVL 789 (923)
-|.||+.|-.|.|+.+|.+||+.+.+.+.. .+.||+++... ..+-+.+++ +.|+++
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence 478999999999999999999999887654 34555554321 134566666 456655
No 201
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=39.42 E-value=4.5e+02 Score=29.43 Aligned_cols=135 Identities=13% Similarity=0.104 Sum_probs=71.9
Q ss_pred CCceEEEEECCCCCCCccc---ccCccccc--c-CCCc-cEEEEeccCCCCCCCCCCCeEEEEecccccccccccC--C-
Q psy1644 241 ESAQVVIIDMNDPTNPIRR---PISADSAI--M-NPAS-KVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPM--T- 310 (923)
Q Consensus 241 ~~~qVvIVDL~n~~~v~Rr---pi~ADSAI--M-nP~~-~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs~~m--~- 310 (923)
....|.+.|+.++..+... .-+.=.++ . +|.. +++|==+ .-+++.|||+.+.+.++...- .
T Consensus 285 ~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S---------~D~tvklWD~~~~~~~~~~~~~~~~ 355 (524)
T 2j04_B 285 KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA---------VDGYFYIFNPKDIATTKTTVSRFRG 355 (524)
T ss_dssp TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEE---------TTSEEEEECGGGHHHHCEEEEECSC
T ss_pred CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEec---------cCCeEEEEECCCCCccccccccccc
Confidence 3458889998876443221 11111222 2 3433 5665542 346999999988765554321 1
Q ss_pred CceeEEEeccCCeEEEEe---cCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceee
Q psy1644 311 DDVVFWKWISPNTLALVT---ETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQ 387 (923)
Q Consensus 311 E~VvfWkWis~~tLglVT---~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQ 387 (923)
..|.-=.| +++.-.+++ +..|..|++.....+. .|..|. ..|..-..++++++++-. .-+|.+.
T Consensus 356 ~~v~~v~f-sp~~~~l~s~~~d~tv~lwd~~~~~~~~-~l~gH~----~~V~sva~Sp~g~~l~Sg-------s~Dgtv~ 422 (524)
T 2j04_B 356 SNLVPVVY-CPQIYSYIYSDGASSLRAVPSRAAFAVH-PLVSRE----TTITAIGVSRLHPMVLAG-------SADGSLI 422 (524)
T ss_dssp CSCCCEEE-ETTTTEEEEECSSSEEEEEETTCTTCCE-EEEECS----SCEEEEECCSSCCBCEEE-------ETTTEEE
T ss_pred CcccceEe-CCCcCeEEEeCCCCcEEEEECcccccce-eeecCC----CceEEEEeCCCCCeEEEE-------ECCCEEE
Confidence 12211223 343212443 3369999986433222 233332 356666678888876432 2468889
Q ss_pred eccccccccc
Q psy1644 388 LYSVERKCSQ 397 (923)
Q Consensus 388 LYS~er~~SQ 397 (923)
||+..++.-+
T Consensus 423 lwd~~~~~~~ 432 (524)
T 2j04_B 423 ITNAARRLLH 432 (524)
T ss_dssp CCBSCSSTTT
T ss_pred EEechHhhcc
Confidence 9998765433
No 202
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=39.37 E-value=3.5e+02 Score=28.11 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=43.7
Q ss_pred cEEEEEecCCCCCCCCCcccceeeeecCCCccCCcceeEEeccccceEEEEe-eeeeEEEEecccceeeeecccCCC
Q psy1644 30 GKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYDVVYLIT-KFGYIHVYDIETATCIYMNRISSD 105 (923)
Q Consensus 30 gkLhiiEig~~~~g~~~f~kK~vd~~Fppe~~~DFPvamqiS~k~G~iyliT-K~G~lhl~Dlet~t~iy~~rIS~~ 105 (923)
+.|+.+++.+. |-...+..|+ ..|+.++.+.. +-||+.| +.|.+++||.+|+..+-+=...++
T Consensus 43 S~v~~vD~~tg--------kv~~~~~l~~---~~fgeGi~~~~--~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~ 106 (243)
T 3mbr_X 43 SSVRKVDLETG--------RILQRAEVPP---PYFGAGIVAWR--DRLIQLTWRNHEGFVYDLATLTPRARFRYPGE 106 (243)
T ss_dssp CEEEEEETTTC--------CEEEEEECCT---TCCEEEEEEET--TEEEEEESSSSEEEEEETTTTEEEEEEECSSC
T ss_pred ceEEEEECCCC--------CEEEEEeCCC---CcceeEEEEeC--CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC
Confidence 58999988652 1122334444 56888887764 6688888 678999999999888765444433
No 203
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=39.14 E-value=51 Score=37.52 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=39.8
Q ss_pred ccEEEEEeccceEEEEecCCcceeeeeccc---------------CCceEEeeccC---CCCcEEEEcC-CCeEE
Q psy1644 734 YDVVYLITKFGYIHVYDIETATCIYMNRIS---------------SDTIFVTAPHE---ATGGIIGVNR-KGQVL 789 (923)
Q Consensus 734 yGvIyvITK~GflhlyDleTgt~Iy~nRIS---------------~dtIFvta~~~---~t~Gii~VNr-kGqVL 789 (923)
-|.||+.|-.|.|+-+|.+||+.+.+.+.. .+.||+++... ..+.+++++. .|+++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 189 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELK 189 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEE
Confidence 478999999999999999999999875532 34566655421 1355677773 47665
No 204
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=39.12 E-value=1.7e+02 Score=30.82 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=28.0
Q ss_pred cCCcceeEEeccccceEEEEeeeeeEEEEeccc
Q psy1644 61 ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIET 93 (923)
Q Consensus 61 ~~DFPvamqiS~k~G~iyliTK~G~lhl~Dlet 93 (923)
.+|..++|.+-.....|.++|+.||..-.+++.
T Consensus 194 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 194 EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp TTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 489999998776667799999999999998854
No 205
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=39.01 E-value=2e+02 Score=30.81 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=28.6
Q ss_pred cCCcceeEEeccccceEEEEeeeeeEEEEeccc
Q psy1644 61 ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIET 93 (923)
Q Consensus 61 ~~DFPvamqiS~k~G~iyliTK~G~lhl~Dlet 93 (923)
.+|.-++|.+-....-+.++|+.||+....++.
T Consensus 196 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 196 IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 489999998887777899999999999988764
No 206
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=38.52 E-value=47 Score=38.46 Aligned_cols=30 Identities=10% Similarity=0.187 Sum_probs=26.7
Q ss_pred cEEEEEeccceEEEEecCCcceeeeecccC
Q psy1644 735 DVVYLITKFGYIHVYDIETATCIYMNRISS 764 (923)
Q Consensus 735 GvIyvITK~GflhlyDleTgt~Iy~nRIS~ 764 (923)
.+++..+|.|++|++|.+||+.+...++..
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~ 353 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSANKLDD 353 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred EEEEEECCCcEEEEEECCCCCEeecccccC
Confidence 478889999999999999999999988653
No 207
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=38.06 E-value=59 Score=33.02 Aligned_cols=104 Identities=11% Similarity=0.087 Sum_probs=59.2
Q ss_pred HHHHHHHhcChhHHHHHHHHhCCCccHHHHHHHH-Hh-cCCchhhHHHHhhhcCCCC--CcCcc-----------ccchh
Q psy1644 466 VIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNV-MR-VNPDQGVGFAQMLVQDDEP--LADIN-----------QSYEG 530 (923)
Q Consensus 466 Vi~clae~Gqfdkiv~Y~~~vgytpDy~~LL~~i-~~-~nP~~a~efA~~L~~~~~p--l~di~-----------~~~eg 530 (923)
....+.+.|++++++.+.++ +..++....+-.+ .+ -.++.|.+..+.+.+..|. ...+. +.-|.
T Consensus 107 la~~~~~~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA 185 (291)
T 3mkr_A 107 AASIYFYDQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDA 185 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHH
Confidence 44678899999999999988 4444433333222 33 2677777665555443211 11110 01112
Q ss_pred hhhhhcccccccCCcchhhHHHHHHHhcCChhhhHHhhhc
Q psy1644 531 LFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRE 570 (923)
Q Consensus 531 Lyy~Lgsivn~s~d~dVhfKYIeAA~k~gq~~EvERicre 570 (923)
+..|=..+-....++++++-.-.+..+.|++.|.|...++
T Consensus 186 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2222222222345677777777778899999999887666
No 208
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=37.03 E-value=71 Score=32.39 Aligned_cols=26 Identities=4% Similarity=-0.032 Sum_probs=18.3
Q ss_pred EEEEEeccceEEEEecCCcceeeeec
Q psy1644 736 VVYLITKFGYIHVYDIETATCIYMNR 761 (923)
Q Consensus 736 vIyvITK~GflhlyDleTgt~Iy~nR 761 (923)
+++.-+..|.|+.+|..||+.+.+-.
T Consensus 178 ~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 178 CLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp EEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred EEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 33334455689999999999877754
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=36.46 E-value=4.1e+02 Score=28.15 Aligned_cols=49 Identities=6% Similarity=-0.092 Sum_probs=34.9
Q ss_pred CCeEEEEecccccccccccCCCceeEEEeccCCe-EEEEec---CeEEEEecc
Q psy1644 290 PKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNT-LALVTE---TSVYHWSME 338 (923)
Q Consensus 290 g~~LQIFNle~K~KLKs~~m~E~VvfWkWis~~t-LglVT~---taVYHWsi~ 338 (923)
+..|.++|+++.+.++.........--.|-.+.. +.+|+. ..|+.|++.
T Consensus 297 ~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 297 AKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred CCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 4589999999999999987766444445554544 677764 477777764
No 210
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=36.30 E-value=20 Score=38.13 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=34.2
Q ss_pred HHHHhHHhhccCCCCCc-eEEeeccccchhHHHHHHHhcCchheehhhhhccCccccceeeeeccccCCHHHhhhhh
Q psy1644 577 ERVKNFLKEAKLTDQLP-LIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVK 652 (923)
Q Consensus 577 ekvKnfLKeakL~d~~P-LI~VCDrf~fV~dLv~YLY~n~~~k~IEvYvqkvNp~~tP~VvgLlD~dc~E~~Ik~LL 652 (923)
+|.+.+|...|=...+| +++|.|-..--.-+.+=- ++ +.| ||||+|-|||.+.|.--+
T Consensus 143 ~kL~k~lgGik~m~~~Pdll~V~Dp~~e~~Ai~EA~--------------~l---~IP-vIaivDTn~dp~~VdypI 201 (256)
T 2vqe_B 143 ERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREAR--------------KL---FIP-VIALADTDSDPDLVDYII 201 (256)
T ss_dssp HHHHHHSTTGGGCSSCCSEEEESCTTTTHHHHHHHH--------------HT---TCC-CEECCCTTSCGGGCSEEC
T ss_pred HHHHHhhcCccccccCCCEEEEeCCccchHHHHHHH--------------Hc---CCC-EEEEecCCCCchhcceEe
Confidence 56667776654333445 888888542211111111 11 235 789999999999876543
No 211
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=35.92 E-value=1.2e+02 Score=30.45 Aligned_cols=69 Identities=7% Similarity=0.052 Sum_probs=43.5
Q ss_pred cCHHHHHhhhcCCCCCCCCchHHHHHHHHHhcCCCCcccccccchhhHHH----------HHHHHHHhcChhHHHHHHHH
Q psy1644 416 RTPQTIVKFQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCRPVLAQ----------VIQSFAETGQFQKIVLYAKK 485 (923)
Q Consensus 416 Rt~eTI~rFK~vp~~pGq~sPLL~YF~~LL~~g~LN~~ESlEL~rpVL~Q----------Vi~clae~Gqfdkiv~Y~~~ 485 (923)
++.+.+.+|-.- ..|+...+++.-=..+++.|.+ .+.+++.+.+|.. ...++.++|++++++.+.++
T Consensus 100 ~~~~~l~~~l~~-~lp~~~~~~~~~a~~~~~~g~~--~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~ 176 (287)
T 3qou_A 100 QPEEAIRALLDX-VLPREEELXAQQAMQLMQESNY--TDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXT 176 (287)
T ss_dssp CCHHHHHHHHHH-HSCCHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHH-HcCCchhhHHHHHHHHHhCCCH--HHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 455555554211 1255555666666667777743 4455566666655 56678889999999988877
Q ss_pred hC
Q psy1644 486 VG 487 (923)
Q Consensus 486 vg 487 (923)
.-
T Consensus 177 ~~ 178 (287)
T 3qou_A 177 IP 178 (287)
T ss_dssp SC
T ss_pred Cc
Confidence 63
No 212
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=35.89 E-value=3.6e+02 Score=27.30 Aligned_cols=63 Identities=16% Similarity=0.291 Sum_probs=39.0
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccccc-----cccccCCCceeEEEeccC-CeEEEEec-CeEEEEec
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSK-----MKAHPMTDDVVFWKWISP-NTLALVTE-TSVYHWSM 337 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~K-----LKs~~m~E~VvfWkWis~-~tLglVT~-taVYHWsi 337 (923)
+...+|..+.||.=+ ...++.+|++++... ++.| ...|.--.|-.+ +.|+-.+. ..|..|+.
T Consensus 155 ~~~~~p~~~~l~s~s---------~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 155 HVVWHPSQELLASAS---------YDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp EEEECSSSSCEEEEE---------TTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEEECCCCCEEEEEe---------CCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 455788888777652 346899999987642 3333 234555556433 34554443 47999987
Q ss_pred c
Q psy1644 338 E 338 (923)
Q Consensus 338 ~ 338 (923)
.
T Consensus 224 ~ 224 (345)
T 3fm0_A 224 Y 224 (345)
T ss_dssp E
T ss_pred c
Confidence 3
No 213
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=35.86 E-value=3.6e+02 Score=27.25 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=27.1
Q ss_pred cCCcceeEEeccccceEEEEeeee-------------------------eEEEEecccceeee
Q psy1644 61 ANDFPVAMQVSAKYDVVYLITKFG-------------------------YIHVYDIETATCIY 98 (923)
Q Consensus 61 ~~DFPvamqiS~k~G~iyliTK~G-------------------------~lhl~Dlet~t~iy 98 (923)
+-..|-++-++.. |-+|+....+ .|.+||.+||..+-
T Consensus 22 ~l~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 83 (329)
T 3fvz_A 22 LPGQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ 83 (329)
T ss_dssp CCSCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE
T ss_pred ecCCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe
Confidence 3456778888765 7777665544 69999999998763
No 214
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=35.54 E-value=2.1e+02 Score=30.24 Aligned_cols=76 Identities=12% Similarity=0.133 Sum_probs=49.6
Q ss_pred cCCcceeEEeccccceEEEEeeeeeEEEEeccc---------ceeeeec-cc-CCCcEEEeecc---CCCcceEEEecCC
Q psy1644 61 ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIET---------ATCIYMN-RI-SSDTIFVTAPH---EATGGIIGLTNVG 126 (923)
Q Consensus 61 ~~DFPvamqiS~k~G~iyliTK~G~lhl~Dlet---------~t~iy~~-rI-S~~~if~ta~~---~~t~Gil~vn~~G 126 (923)
.+|+.+++....-|.-+.++|+.|+++-+..+. |.+|-.. ++ .+|.|....+- +...-++.+++.|
T Consensus 45 e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G 124 (312)
T 1suu_A 45 DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASG 124 (312)
T ss_dssp TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCC
Confidence 489999999999999999999999988877752 2221000 11 12333333221 2345588888888
Q ss_pred cceeeeeeece
Q psy1644 127 INVGSVSFNTL 137 (923)
Q Consensus 127 ~~~~si~~~t~ 137 (923)
.+..+.+++.
T Consensus 125 -~~kr~~l~~~ 134 (312)
T 1suu_A 125 -KIARFESTDF 134 (312)
T ss_dssp -EEEEEEGGGG
T ss_pred -eEEEEEHHHh
Confidence 5777766554
No 215
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=35.48 E-value=59 Score=32.99 Aligned_cols=58 Identities=5% Similarity=-0.008 Sum_probs=30.2
Q ss_pred cEEEEEeccceEEEEecCCcceeeeecccC-CceEEeeccCCCCcEEEEc-C-CCeEEEEEecC
Q psy1644 735 DVVYLITKFGYIHVYDIETATCIYMNRISS-DTIFVTAPHEATGGIIGVN-R-KGQVLSVSVDE 795 (923)
Q Consensus 735 GvIyvITK~GflhlyDleTgt~Iy~nRIS~-dtIFvta~~~~t~Gii~VN-r-kGqVL~V~Ide 795 (923)
|-+++ +..+-++.||. +|+.+.+-.... ..+...+ ....+.++... . .|+|+.+..+.
T Consensus 48 G~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~-~~~dG~~lv~~~~~~~~v~~vd~~G 108 (276)
T 3no2_A 48 GEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTAR-ILPDGNALVAWCGHPSTILEVNMKG 108 (276)
T ss_dssp SCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEEE-ECTTSCEEEEEESTTEEEEEECTTS
T ss_pred CCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccccE-ECCCCCEEEEecCCCCEEEEEeCCC
Confidence 33444 66666777777 777776655532 2333222 23344454443 2 56666555433
No 216
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=35.48 E-value=4.7e+02 Score=28.51 Aligned_cols=131 Identities=9% Similarity=0.068 Sum_probs=67.1
Q ss_pred eeeecceEEEEEecc--CCCceEEEEECCCCCCCcc--cccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccc
Q psy1644 225 LTMESDKFICVREKI--AESAQVVIIDMNDPTNPIR--RPISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEM 300 (923)
Q Consensus 225 lTmESDkyICVRE~~--~~~~qVvIVDL~n~~~v~R--rpi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~ 300 (923)
+.+..|+.+...+.. .+...+..+|+.+.....+ ..-.....-..|..+-+++-.. ....+.+||+++
T Consensus 70 ~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~--------~~~~~~l~d~~~ 141 (582)
T 3o4h_A 70 PHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGA--------TEDRVALYALDG 141 (582)
T ss_dssp ECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEE--------CSSCEEEEEEET
T ss_pred ccCCCCeEEEEeccCCCCcceEEEEEeccCCCccccccCCCCceeeeeCCCCCeEEEEec--------CCCCceEEEccC
Confidence 334456767666642 2334777788833222111 1111223344566543333210 223455999988
Q ss_pred ccccccccCCCceeEEEe-ccCCeEEEEec-----CeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCeEE
Q psy1644 301 KSKMKAHPMTDDVVFWKW-ISPNTLALVTE-----TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLL 371 (923)
Q Consensus 301 K~KLKs~~m~E~VvfWkW-is~~tLglVT~-----taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~ 371 (923)
.+...-...+. .-+.| -+-+.|+.+.. ..+|.|++++.. +..+. .+ ...+.+-.-++|++|++
T Consensus 142 g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~~~l~-~~----~~~~~~~~~SpDG~~l~ 210 (582)
T 3o4h_A 142 GGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LRVFD-SG----EGSFSSASISPGMKVTA 210 (582)
T ss_dssp TEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-CEEEC-CS----SCEEEEEEECTTSCEEE
T ss_pred CcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-ceEee-cC----CCccccceECCCCCEEE
Confidence 64322111121 34444 35566776654 469999986432 22221 11 23467778899999988
No 217
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=35.39 E-value=64 Score=37.56 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=26.4
Q ss_pred ccEEEEEeccceEEEEecCCcceeeeeccc
Q psy1644 734 YDVVYLITKFGYIHVYDIETATCIYMNRIS 763 (923)
Q Consensus 734 yGvIyvITK~GflhlyDleTgt~Iy~nRIS 763 (923)
-|.||+-|-.|.|+-+|.+||+.+.+....
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~ 150 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTR 150 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCc
Confidence 478999999999999999999999776553
No 218
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=35.19 E-value=1.1e+02 Score=24.67 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=17.6
Q ss_pred CcchhhHHHHHHHhcCChhhhHHhhhc
Q psy1644 544 DQEVHFKYIQAACKTGQIKEVERICRE 570 (923)
Q Consensus 544 d~dVhfKYIeAA~k~gq~~EvERicre 570 (923)
++++.+.......+.|++++..+..++
T Consensus 102 ~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 102 SAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 445566666677777877776665544
No 219
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=34.79 E-value=6.6e+02 Score=30.04 Aligned_cols=134 Identities=10% Similarity=0.085 Sum_probs=75.9
Q ss_pred cceeeecceEEEEEeccCCCceEEEEECCCCCC-CcccccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEecccc
Q psy1644 223 NTLTMESDKFICVREKIAESAQVVIIDMNDPTN-PIRRPISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMK 301 (923)
Q Consensus 223 ~~lTmESDkyICVRE~~~~~~qVvIVDL~n~~~-v~Rrpi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K 301 (923)
.++.+..|+.+.+.+.. +...|..+|+..... .....-...+.-..|..+.||.- ....|.+|+++.
T Consensus 207 ~~~~~s~d~l~~~~~~d-g~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~----------~~~~i~~~d~~~- 274 (1045)
T 1k32_A 207 SSPVIVGHRIYFITDID-GFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS----------KGGSIYIFNPDT- 274 (1045)
T ss_dssp EEEEEETTEEEEEECTT-SSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE----------ETTEEEEECTTT-
T ss_pred cceEEeCCEEEEEEecc-CceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE----------eCCEEEEecCCc-
Confidence 34566678777776543 445777788754321 11111112233456777766664 246899999944
Q ss_pred cccccccCC------------CceeEEEec--cCCeEEEEecCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCC
Q psy1644 302 SKMKAHPMT------------DDVVFWKWI--SPNTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQ 367 (923)
Q Consensus 302 ~KLKs~~m~------------E~VvfWkWi--s~~tLglVT~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~ 367 (923)
.++..+.-. ..+.-..|- +-+.|+.+....+|.|++.+.. +..+ ..|. +..+....-+ |+
T Consensus 275 ~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~-~~~~-~~~~---~~~~~~~~~s-dg 348 (1045)
T 1k32_A 275 EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTY-VLKV-PEPL---RIRYVRRGGD-TK 348 (1045)
T ss_dssp CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSB-EEEC-SCCS---CEEEEEECSS-SE
T ss_pred eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCc-eEEc-cCCC---cceEEeeeEc-CC
Confidence 344432221 157788885 4457999999999999986432 2211 1111 1245555556 77
Q ss_pred CeEEEEe
Q psy1644 368 TWLLLIG 374 (923)
Q Consensus 368 kW~~LvG 374 (923)
++++.++
T Consensus 349 ~~l~~~s 355 (1045)
T 1k32_A 349 VAFIHGT 355 (1045)
T ss_dssp EEEEEEE
T ss_pred CeEEEEE
Confidence 7766543
No 220
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=34.73 E-value=1.1e+02 Score=34.68 Aligned_cols=69 Identities=9% Similarity=-0.007 Sum_probs=45.5
Q ss_pred ceeeeeeeeccccccEEEEEeccceEEEEecCCcceeeeecccCCceEEeeccCCCCcEEEEcCCCeEE
Q psy1644 721 KYIEIYVQKVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVL 789 (923)
Q Consensus 721 ~~~~i~~~qvS~KyGvIyvITK~GflhlyDleTgt~Iy~nRIS~dtIFvta~~~~t~Gii~VNrkGqVL 789 (923)
|--.|.+-.+|+.-..+..-+..|-|++||+.+|.++.+-+--.+.|...+-+..+.-++...++|.|.
T Consensus 429 h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~ 497 (694)
T 3dm0_A 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497 (694)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 445566566788777888888999999999999998765444445555444444334444444555443
No 221
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=34.70 E-value=1.8e+02 Score=30.71 Aligned_cols=76 Identities=9% Similarity=0.097 Sum_probs=43.0
Q ss_pred cCCcceeEEec---cccceEEEEeeeeeEEEEecccceeeee-c----cc-CCCcEEEeeccCCCcceEEEecCCcceee
Q psy1644 61 ANDFPVAMQVS---AKYDVVYLITKFGYIHVYDIETATCIYM-N----RI-SSDTIFVTAPHEATGGIIGLTNVGINVGS 131 (923)
Q Consensus 61 ~~DFPvamqiS---~k~G~iyliTK~G~lhl~Dlet~t~iy~-~----rI-S~~~if~ta~~~~t~Gil~vn~~G~~~~s 131 (923)
.+|.-++|-.- +....++++|+.||+.-..++.=...-+ + ++ .+|-+.....-+...-++.+++.| +..-
T Consensus 93 ~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G-~~ir 171 (307)
T 1zi0_A 93 QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEG-KVVR 171 (307)
T ss_dssp TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEEEEEETTS-EEEE
T ss_pred CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCC-cEEE
Confidence 47778888542 2345689999999999998763211111 1 11 123332222222344577788888 5555
Q ss_pred eeeece
Q psy1644 132 VSFNTL 137 (923)
Q Consensus 132 i~~~t~ 137 (923)
+..+++
T Consensus 172 f~~~~v 177 (307)
T 1zi0_A 172 FKESSV 177 (307)
T ss_dssp EEGGGS
T ss_pred EEHHHc
Confidence 555444
No 222
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=34.17 E-value=61 Score=40.90 Aligned_cols=53 Identities=11% Similarity=-0.072 Sum_probs=35.7
Q ss_pred HHHHHHHhcChhHHHHHHH------HhCCCcc---HHHHHHHHHhc-CCchhhHHHHhhhcCC
Q psy1644 466 VIQSFAETGQFQKIVLYAK------KVGYSPD---YVFLLRNVMRV-NPDQGVGFAQMLVQDD 518 (923)
Q Consensus 466 Vi~clae~Gqfdkiv~Y~~------~vgytpD---y~~LL~~i~~~-nP~~a~efA~~L~~~~ 518 (923)
.|.+||+.|+.+++...-. +.|..|| |..||....+. ..+.|.++-..+...+
T Consensus 133 LIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G 195 (1134)
T 3spa_A 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195 (1134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 5567788888777776652 2367776 77777777665 5667777766666554
No 223
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=33.67 E-value=13 Score=38.51 Aligned_cols=89 Identities=18% Similarity=0.370 Sum_probs=59.8
Q ss_pred HHHHHHhcCCchhhHHHHhhhcC--------------CCCCcCccc-------------------------cchhhhhhh
Q psy1644 495 LLRNVMRVNPDQGVGFAQMLVQD--------------DEPLADINQ-------------------------SYEGLFYFL 535 (923)
Q Consensus 495 LL~~i~~~nP~~a~efA~~L~~~--------------~~pl~di~~-------------------------~~egLyy~L 535 (923)
|--++++.+++.+..||..|..- +..++++.. .|.|+|+.|
T Consensus 42 lA~hLL~~~~~~~~~La~al~~~~~~i~~C~~C~nlte~~~C~IC~d~~Rd~~~iCVVE~~~Dv~aiE~t~~y~G~YhVL 121 (212)
T 3vdp_A 42 LAFFIINMPLDEVRSLSQAIIEAKEKLRYCKICFNITDKEVCDICSDENRDHSTICVVSHPMDVVAMEKVKEYKGVYHVL 121 (212)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHCEECTTTCCEESSSSCHHHHCTTSEEEEEEEESSHHHHHHHHTTSCCCEEEEEC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCCcCCCCCCCCCCCCEEEEECCHHHHHHHHhhCccceEEEec
Confidence 33456677888888888877652 122344443 588999999
Q ss_pred cccccccCC---cchhhHHHHHHHhcCChhhhHHhhhcCCccChHHHHhHHhh
Q psy1644 536 GSIVNYSQD---QEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKE 585 (923)
Q Consensus 536 gsivn~s~d---~dVhfKYIeAA~k~gq~~EvERicresn~YdpekvKnfLKe 585 (923)
|..++--+. .|+.++-+..=.+.|+++|| |.--|.--+.|-+-.||++
T Consensus 122 gG~iSPldGigP~~L~i~~L~~Ri~~~~v~EV--IlAtnpTvEGeaTa~Yi~~ 172 (212)
T 3vdp_A 122 HGVISPIEGVGPEDIRIKELLERVRDGSVKEV--ILATNPDIEGEATAMYIAK 172 (212)
T ss_dssp SSCCBTTTTBCGGGTTHHHHHHHHHHSCCSEE--EECCCSSHHHHHHHHHHHH
T ss_pred CCccCccCCCCccccCHHHHHHHHhcCCCcEE--EEECCCCccHHHHHHHHHH
Confidence 988766554 47788776666677888887 5555666666666666643
No 224
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=33.31 E-value=1.8e+02 Score=30.21 Aligned_cols=73 Identities=11% Similarity=0.080 Sum_probs=49.1
Q ss_pred ceeeeeeeeccccccEEEEEeccceEEEEecCCcceeeee-cccCCceEEeeccCCCCcEEEEcCCCeEEEEEe
Q psy1644 721 KYIEIYVQKVSAKYDVVYLITKFGYIHVYDIETATCIYMN-RISSDTIFVTAPHEATGGIIGVNRKGQVLSVSV 793 (923)
Q Consensus 721 ~~~~i~~~qvS~KyGvIyvITK~GflhlyDleTgt~Iy~n-RIS~dtIFvta~~~~t~Gii~VNrkGqVL~V~I 793 (923)
|.-.|.+..+|+.-..|..-+..|-|.|||++||.++..- +-=.+.|---+-..++.=++....+|.|--..|
T Consensus 268 ~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 268 RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 4445677778998888999999999999999999998763 333455554443333333444556666655555
No 225
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=32.92 E-value=1.1e+02 Score=33.61 Aligned_cols=44 Identities=11% Similarity=-0.025 Sum_probs=30.2
Q ss_pred CCCCceEEeeccccchhHHHHHHHhcCchheehhhhhccCcccc-ceeee-eccccC
Q psy1644 589 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKGRKHLL-EKWLK-EEKLEC 643 (923)
Q Consensus 589 ~d~~PLI~VCDrf~fV~dLv~YLY~n~~~k~IEvYvqkvNp~~t-P~Vvg-LlD~dc 643 (923)
|+..++++|-|-|+-.++|...|-..+. .|... =..+| ++|-.-
T Consensus 210 ~~~~~~~vigDiHG~~~~l~~~l~~~~~-----------~~~~~~~v~lGD~vdrG~ 255 (477)
T 1wao_1 210 KETEKITVCGDTHGQFYDLLNIFELNGL-----------PSETNPYIFNGDFVDRGS 255 (477)
T ss_dssp CSSCEEEEECBCTTCHHHHHHHHHHHCC-----------CBTTBCEEEESCCSSSST
T ss_pred CCCcceEEEeCCCCCHHHHHHHHHHcCC-----------CCCcCeEEEeccccCCCc
Confidence 3445599999999999999988876542 12222 34577 888654
No 226
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=32.01 E-value=1.7e+02 Score=31.99 Aligned_cols=63 Identities=8% Similarity=0.008 Sum_probs=34.7
Q ss_pred ccceEEEEeeeeeEEEEecccceeeee-------cccCC---CcEEEeeccCCCcceEEEecCCcceeeeeeece
Q psy1644 73 KYDVVYLITKFGYIHVYDIETATCIYM-------NRISS---DTIFVTAPHEATGGIIGLTNVGINVGSVSFNTL 137 (923)
Q Consensus 73 k~G~iyliTK~G~lhl~Dlet~t~iy~-------~rIS~---~~if~ta~~~~t~Gil~vn~~G~~~~si~~~t~ 137 (923)
....|+++|+.||.....++.=..--| .+++. ..+.+. .-....-++.+++.| ++.-+..+++
T Consensus 245 ~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~-~v~~~d~i~liT~~G-~~iR~~v~~i 317 (370)
T 3l6v_A 245 DVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAV-LLGSTDEVMLISDGG-TLVRTRGSEI 317 (370)
T ss_dssp --CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEE-EECTTCEEEEEETTC-CEEEEEGGGS
T ss_pred CCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEE-EeCCCceEEEEcCCC-eEEEeeHhhC
Confidence 345899999999999998874222111 13332 222221 123345666777777 4555555554
No 227
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=31.52 E-value=1.7e+02 Score=30.50 Aligned_cols=74 Identities=20% Similarity=0.251 Sum_probs=46.2
Q ss_pred ccceeeeeeeeccc-cccEEEEEeccceEEEEecCCcc-----eeeeecccCCceEEeeccCCCCcEEEEcCCCeEEEEE
Q psy1644 719 LQKYIEIYVQKVSA-KYDVVYLITKFGYIHVYDIETAT-----CIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSVS 792 (923)
Q Consensus 719 ~~~~~~i~~~qvS~-KyGvIyvITK~GflhlyDleTgt-----~Iy~nRIS~dtIFvta~~~~t~Gii~VNrkGqVL~V~ 792 (923)
-+++..+.. .+ .-..+.++|+.||+.-..++.=. ...++==.+|.+--...-+...-++.++++|+++.+.
T Consensus 67 ~e~i~~v~~---~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 67 EEKIVGAFI---REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFS 143 (276)
T ss_dssp TCCEEEEEE---GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEC---CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEE
Confidence 346666553 22 34689999999999999987632 1111111223332222223345699999999999998
Q ss_pred ecC
Q psy1644 793 VDE 795 (923)
Q Consensus 793 Ide 795 (923)
+++
T Consensus 144 ~~e 146 (276)
T 3no0_A 144 VRE 146 (276)
T ss_dssp GGG
T ss_pred hhh
Confidence 877
No 228
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=31.45 E-value=1.1e+02 Score=28.59 Aligned_cols=82 Identities=12% Similarity=0.131 Sum_probs=44.8
Q ss_pred HHHHHHHhcChhHHHHHHHHhC-CCc---cHHHHHHHHH--hcCCchhhHHHHhhhcCCCCCcCccccchhhhhhhcccc
Q psy1644 466 VIQSFAETGQFQKIVLYAKKVG-YSP---DYVFLLRNVM--RVNPDQGVGFAQMLVQDDEPLADINQSYEGLFYFLGSIV 539 (923)
Q Consensus 466 Vi~clae~Gqfdkiv~Y~~~vg-ytp---Dy~~LL~~i~--~~nP~~a~efA~~L~~~~~pl~di~~~~egLyy~Lgsiv 539 (923)
.-.++.++|++++++.+.++.= ..| ++...|-.+. .-..++|.+..... +-
T Consensus 42 lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a-----------------------l~ 98 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA-----------------------FA 98 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH-----------------------Hh
Confidence 5568889999999999877641 233 2222222211 11334444333222 22
Q ss_pred cccCCcchhhHHHHHHHhcCChhhhHHhhhc
Q psy1644 540 NYSQDQEVHFKYIQAACKTGQIKEVERICRE 570 (923)
Q Consensus 540 n~s~d~dVhfKYIeAA~k~gq~~EvERicre 570 (923)
--.++++.+|..=.+-.++|++.|-.+..+.
T Consensus 99 l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2234566666666666777887776655544
No 229
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=30.59 E-value=1e+02 Score=33.51 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=28.6
Q ss_pred cccceEEEEeeeeeEEEEecccceeeeecccC
Q psy1644 72 AKYDVVYLITKFGYIHVYDIETATCIYMNRIS 103 (923)
Q Consensus 72 ~k~G~iyliTK~G~lhl~Dlet~t~iy~~rIS 103 (923)
+..|++|+-|-.|.||=+|.+||..+.+-..+
T Consensus 8 ~~~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~ 39 (339)
T 2be1_A 8 SLSDILIAADVEGGLHAVDRRNGHIIWSIEPE 39 (339)
T ss_dssp EEEEEEEEEETTSCEEEEETTTTEEEEEECGG
T ss_pred eeCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 45689999999999999999999999887665
No 230
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=30.52 E-value=2.4e+02 Score=30.12 Aligned_cols=74 Identities=7% Similarity=0.038 Sum_probs=39.5
Q ss_pred CCcceeEEeccc---cceEEEEeeeeeEEEEecccceeee------ecccC-C-CcEEEeeccCCCcceEEEecCCccee
Q psy1644 62 NDFPVAMQVSAK---YDVVYLITKFGYIHVYDIETATCIY------MNRIS-S-DTIFVTAPHEATGGIIGLTNVGINVG 130 (923)
Q Consensus 62 ~DFPvamqiS~k---~G~iyliTK~G~lhl~Dlet~t~iy------~~rIS-~-~~if~ta~~~~t~Gil~vn~~G~~~~ 130 (923)
+|.-++|-.-.. -..++++|+.||+.-..++.=...- .-++. + +.+.+.. -+...-++.+++.| +..
T Consensus 91 ~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~-~~~~~~i~l~T~~G-~~i 168 (323)
T 1wp5_A 91 DEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHL-TDGMNELFLVTHNG-YAL 168 (323)
T ss_dssp TCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEE-ECSCSEEEEEETTS-EEE
T ss_pred CCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEE-eCCCCEEEEEeCCC-cEE
Confidence 677776643322 3458899999999999886321111 11122 2 2333222 12334577777777 455
Q ss_pred eeeeece
Q psy1644 131 SVSFNTL 137 (923)
Q Consensus 131 si~~~t~ 137 (923)
-+..+++
T Consensus 169 rf~~~ev 175 (323)
T 1wp5_A 169 WFDESEV 175 (323)
T ss_dssp EEEGGGS
T ss_pred EEEHHHC
Confidence 5555444
No 231
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=30.39 E-value=4.2e+02 Score=28.94 Aligned_cols=119 Identities=7% Similarity=0.123 Sum_probs=61.8
Q ss_pred ccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccc--ccccccccCCCceeEEEec-cCCeEEEEecC--eEEEEeccC
Q psy1644 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEM--KSKMKAHPMTDDVVFWKWI-SPNTLALVTET--SVYHWSMEG 339 (923)
Q Consensus 265 SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~--K~KLKs~~m~E~VvfWkWi-s~~tLglVT~t--aVYHWsi~g 339 (923)
+..-+|. ++++....-. .....++|.++. ..+.......+.+..+.|- +.+.+++++.. .+..|++++
T Consensus 69 ~~~~spd-~~l~~~~~~~------g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~ 141 (582)
T 3o4h_A 69 DPHYGVG-RVILVRDVSK------GAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDG 141 (582)
T ss_dssp EECTTCS-EEEEEEECST------TSCCEEEEEEETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEET
T ss_pred cccCCCC-eEEEEeccCC------CCcceEEEEEeccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccC
Confidence 3455677 7777652100 123456666654 3332233333445555665 44567777643 566898864
Q ss_pred CCCchhhhhcccCCCCCeeEeeeeCCCCCeEEEEeeecccccccceeeeccccccccccccc
Q psy1644 340 DSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSVERKCSQPIEE 401 (923)
Q Consensus 340 ~s~P~K~FdR~~~L~~~QIInYr~d~~~kW~~LvGI~~~~~~i~G~mQLYS~er~~SQ~iEG 401 (923)
. .+..+...+. .....++|++|++..+-...+ .+.+-++..+.+..+.+.+
T Consensus 142 g-~~~~l~~~~~-------~~~~~spDG~~la~~~~~~~~---~~~i~~~d~~~g~~~~l~~ 192 (582)
T 3o4h_A 142 G-GLRELARLPG-------FGFVSDIRGDLIAGLGFFGGG---RVSLFTSNLSSGGLRVFDS 192 (582)
T ss_dssp T-EEEEEEEESS-------CEEEEEEETTEEEEEEEEETT---EEEEEEEETTTCCCEEECC
T ss_pred C-cEEEeecCCC-------ceEEECCCCCEEEEEEEcCCC---CeEEEEEcCCCCCceEeec
Confidence 3 3343443221 566788999998766543221 1234455544444444444
No 232
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=30.39 E-value=67 Score=37.19 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=31.2
Q ss_pred ccccccEEEEEeccceEEEEecCCcceeeeecccC
Q psy1644 730 VSAKYDVVYLITKFGYIHVYDIETATCIYMNRISS 764 (923)
Q Consensus 730 vS~KyGvIyvITK~GflhlyDleTgt~Iy~nRIS~ 764 (923)
++..-|++|+-|..|++|.||..||..+++-+..+
T Consensus 465 ~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 465 LSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred eEeCCCEEEEECCcccchhhhhhcChhheEecCCC
Confidence 55677999999999999999999999999988753
No 233
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=30.07 E-value=2.6e+02 Score=33.83 Aligned_cols=67 Identities=10% Similarity=0.191 Sum_probs=39.6
Q ss_pred eeeeeeccccccEEEEEeccceEEEE-----ecCCcceeeeecccCCceEEeeccCCCCcEEEEcCCCeEEEEEecC
Q psy1644 724 EIYVQKVSAKYDVVYLITKFGYIHVY-----DIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSVSVDE 795 (923)
Q Consensus 724 ~i~~~qvS~KyGvIyvITK~Gflhly-----DleTgt~Iy~nRIS~dtIFvta~~~~t~Gii~VNrkGqVL~V~Ide 795 (923)
++.....-+...++.++|+.||+.-- |..+. ..-.+|.+--...-++.+-++..+.+|+|+.+.+.+
T Consensus 462 ~~~~edli~~e~v~v~ls~~GyiKr~~g~~~~~~~~-----~~k~~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~ 533 (716)
T 1zvu_A 462 AMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL-----NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPIT 533 (716)
T ss_dssp CCCSSTTSCCCCCCEEEETTTEEEECCC--------------------CCEEECCCSSSCEEEEETTSEEEEECTTT
T ss_pred hcchhhccCCceEEEEEecCCeEeccCCCCcCcccc-----ccCCCCeEEEEEEecCCCEEEEEecCCcEEEEEeee
Confidence 34444455788899999999999652 21111 112344432222224467899999999999998866
No 234
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=29.73 E-value=1.3e+02 Score=32.59 Aligned_cols=72 Identities=11% Similarity=-0.023 Sum_probs=43.0
Q ss_pred ceeeeeeeecccc-ccEEEEEeccceEEEEecCCcceeeeecccCCceEEeeccCCCCcEEEEcCCCeEEEEE
Q psy1644 721 KYIEIYVQKVSAK-YDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSVS 792 (923)
Q Consensus 721 ~~~~i~~~qvS~K-yGvIyvITK~GflhlyDleTgt~Iy~nRIS~dtIFvta~~~~t~Gii~VNrkGqVL~V~ 792 (923)
|--+|.....++. -.++...+..|.|++||+.++.++....-..+.|...+-+..+.=++..+.+|.|.-..
T Consensus 148 h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd 220 (434)
T 2oit_A 148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYL 220 (434)
T ss_dssp GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEc
Confidence 4445666678887 46777899999999999999977654332233444333333333333344555544433
No 235
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=29.44 E-value=5e+02 Score=26.94 Aligned_cols=50 Identities=24% Similarity=0.239 Sum_probs=38.1
Q ss_pred CCeEEEEeccccccccccc-CCCceeEEEec-cCCeEEEEecCeEEEEeccC
Q psy1644 290 PKTLQIFNIEMKSKMKAHP-MTDDVVFWKWI-SPNTLALVTETSVYHWSMEG 339 (923)
Q Consensus 290 g~~LQIFNle~K~KLKs~~-m~E~VvfWkWi-s~~tLglVT~taVYHWsi~g 339 (923)
..++++||+++...+.... ...+|.=-.|= +-+.||..++..+..|++.|
T Consensus 338 Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~g 389 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLMG 389 (393)
T ss_dssp TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEGG
T ss_pred CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEeC
Confidence 4689999999887766533 35566656663 45789999999999999865
No 236
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=29.31 E-value=82 Score=32.40 Aligned_cols=29 Identities=14% Similarity=0.052 Sum_probs=21.3
Q ss_pred cCCcchhhHHHHHHHhcCChhhhHHhhhc
Q psy1644 542 SQDQEVHFKYIQAACKTGQIKEVERICRE 570 (923)
Q Consensus 542 s~d~dVhfKYIeAA~k~gq~~EvERicre 570 (923)
..++++.+....+..+.|++++..+..++
T Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (450)
T 2y4t_A 174 VWDAELRELRAECFIKEGEPRKAISDLKA 202 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCGGGGHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34567777778888888888887766554
No 237
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=29.31 E-value=46 Score=31.84 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=21.5
Q ss_pred CCcchhhHHHHHHHhcCChhhhHHhhhc
Q psy1644 543 QDQEVHFKYIQAACKTGQIKEVERICRE 570 (923)
Q Consensus 543 ~d~dVhfKYIeAA~k~gq~~EvERicre 570 (923)
+++++++.+-.+-.+.|++.|-.+..+.
T Consensus 149 ~~~~~~~~la~~~~~~g~~~~A~~~~~~ 176 (217)
T 2pl2_A 149 DTPEIRSALAELYLSMGRLDEALAQYAK 176 (217)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6678888887888888888887666554
No 238
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=29.25 E-value=1.5e+02 Score=28.48 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=50.5
Q ss_pred HHHHHHH----hcChhHHHHHHHHh---CCCccHHHHHHHHH------hcCCchhhHHHHhhhcCCCCCcCccccchhhh
Q psy1644 466 VIQSFAE----TGQFQKIVLYAKKV---GYSPDYVFLLRNVM------RVNPDQGVGFAQMLVQDDEPLADINQSYEGLF 532 (923)
Q Consensus 466 Vi~clae----~Gqfdkiv~Y~~~v---gytpDy~~LL~~i~------~~nP~~a~efA~~L~~~~~pl~di~~~~egLy 532 (923)
...++.+ .|++++++.+.++. | .++-...|-.+. .-++++|.++.+.....+. .-.+
T Consensus 44 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---------~~a~ 113 (273)
T 1ouv_A 44 LGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---------AEGC 113 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---------HHHH
T ss_pred HHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCC---------ccHH
Confidence 4556677 88999988887765 3 333333333322 3466667666655554321 1234
Q ss_pred hhhcccccc----cCCcchhhHHHHHHHhcCCh
Q psy1644 533 YFLGSIVNY----SQDQEVHFKYIQAACKTGQI 561 (923)
Q Consensus 533 y~Lgsivn~----s~d~dVhfKYIeAA~k~gq~ 561 (923)
+.||.+... ..|.+--.+|.+.|.+.|..
T Consensus 114 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (273)
T 1ouv_A 114 ASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDG 146 (273)
T ss_dssp HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcH
Confidence 444444433 67777778888888877643
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=28.26 E-value=97 Score=31.09 Aligned_cols=76 Identities=18% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHhcCcHHHHHH----------------HHHhcCChhHHHHHHHhcccC-----------ChHHHHhHHhhcccC
Q psy1644 830 RKFNLLFTNGQYSEAAK----------------AACKTGQIKEVERICRESNCY-----------NAERVKNFLKEAKLT 882 (923)
Q Consensus 830 ~qFn~l~~~G~y~eAAk----------------~A~ktg~i~e~eri~r~~~~y-----------~~~~vk~~l~~~kl~ 882 (923)
.+|+..+.-|++..|-+ +|.+.|+++-+|+.-+.+.-| +.|++++-.+.|...
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~ 89 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTR 89 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHC
Q ss_pred CCcceEEeehhHHHHHHHHhchhhheeee
Q psy1644 883 DQLPLIIVFVHDLVLYLYRNNLQKYIEIY 911 (923)
Q Consensus 883 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 911 (923)
++ +---...|||.|.+.+=|++|
T Consensus 90 g~------~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 90 ED------FGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred cc------HHHHHHHHHHcCCHHHHHHHH
No 240
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=28.05 E-value=93 Score=28.15 Aligned_cols=21 Identities=5% Similarity=0.128 Sum_probs=14.8
Q ss_pred HHHHHHHhcChhHHHHHHHHh
Q psy1644 466 VIQSFAETGQFQKIVLYAKKV 486 (923)
Q Consensus 466 Vi~clae~Gqfdkiv~Y~~~v 486 (923)
...++.++|++++++.+.++.
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~a 47 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQAL 47 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHH
Confidence 345677788888888776553
No 241
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=27.74 E-value=1.2e+02 Score=31.39 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=26.4
Q ss_pred cCCcceeEEeccccceEEEEeeeeeEEEEeccc
Q psy1644 61 ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIET 93 (923)
Q Consensus 61 ~~DFPvamqiS~k~G~iyliTK~G~lhl~Dlet 93 (923)
.+|.-++|-.-....-|.++|+.||+..+.++.
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e 114 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFND 114 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGG
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHH
Confidence 388999996644555688999999999998854
No 242
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=26.65 E-value=5e+02 Score=26.05 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=31.4
Q ss_pred CCeEEEEeccccc--------cccccc--CCCceeEEEeccCCeEEEEecC-eEEEEeccC
Q psy1644 290 PKTLQIFNIEMKS--------KMKAHP--MTDDVVFWKWISPNTLALVTET-SVYHWSMEG 339 (923)
Q Consensus 290 g~~LQIFNle~K~--------KLKs~~--m~E~VvfWkWis~~tLglVT~t-aVYHWsi~g 339 (923)
.+++.||+++... .+.... ....|.--.|-+...|+-.+.. .|..|++.+
T Consensus 220 D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 220 DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVD 280 (330)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEET
T ss_pred CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCC
Confidence 4689999997652 111111 2345665667667777776644 799998753
No 243
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=26.55 E-value=3e+02 Score=31.48 Aligned_cols=94 Identities=16% Similarity=0.277 Sum_probs=0.0
Q ss_pred CCceEEEEEEecCCccEEEEEecCCCCCCCCC-c-------------------ccceeeeecCCCccCCcceeEEecccc
Q psy1644 15 EPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTP-L-------------------AKKAVDVFFPPEAANDFPVAMQVSAKY 74 (923)
Q Consensus 15 ~~stL~cfa~r~~~~gkLhiiEig~~~~g~~~-f-------------------~kK~vd~~Fppe~~~DFPvamqiS~k~ 74 (923)
+..+|+|.. +.-.+||+|++.+..+..+ . .-..+.+-|=| .+...
T Consensus 75 psG~lLAl~----g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHP-----------l~~~d 139 (452)
T 3pbp_A 75 TSGDLLCLF----NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHP-----------KSYRD 139 (452)
T ss_dssp TTSSEEEEE----CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECT-----------TBGGG
T ss_pred CCCCEEEEe----cCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEecc-----------ccCCC
Q ss_pred ceEEEEeeeeeEEEEecccceeeeecccCCCcEEEeeccCCCcceEEEecCCcceeeeeee
Q psy1644 75 DVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGLTNVGINVGSVSFN 135 (923)
Q Consensus 75 G~iyliTK~G~lhl~Dlet~t~iy~~rIS~~~if~ta~~~~t~Gil~vn~~G~~~~si~~~ 135 (923)
+-|-++|+.+.|++||+.. -..+++ ..+...+++ +....=..+.|++|+
T Consensus 140 s~LVVLtsD~~Ir~yDl~~--------s~~~P~---~L~k~~~~f-g~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 140 SCIVVLKEDDTITMFDILN--------SQEKPI---VLNKPNNSF-GLDARVNDITDLEFS 188 (452)
T ss_dssp CEEEEEETTSCEEEEETTC--------TTSCCE---EESCCCSEE-ESCSSCCCEEEEEEC
T ss_pred CeEEEEecCCEEEEEEccc--------CCCCCc---chhcccccc-CCCcccceEEEEEEc
No 244
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=26.44 E-value=1.2e+02 Score=24.93 Aligned_cols=88 Identities=7% Similarity=-0.043 Sum_probs=49.6
Q ss_pred HHHHHHHhcChhHHHHHHHHh-CCCccHHHHHHH---HH--hcCCchhhHHHHhhhcCCCCCcCccccchhhhhhhcccc
Q psy1644 466 VIQSFAETGQFQKIVLYAKKV-GYSPDYVFLLRN---VM--RVNPDQGVGFAQMLVQDDEPLADINQSYEGLFYFLGSIV 539 (923)
Q Consensus 466 Vi~clae~Gqfdkiv~Y~~~v-gytpDy~~LL~~---i~--~~nP~~a~efA~~L~~~~~pl~di~~~~egLyy~Lgsiv 539 (923)
...++.+.|++++++.+.++. ...|+....+.. +. .-++++|.+......+
T Consensus 22 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----------------------- 78 (133)
T 2lni_A 22 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ----------------------- 78 (133)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH-----------------------
Confidence 446788999999999988775 344432222211 11 1133444433332222
Q ss_pred cccCCcchhhHHHHHHHhcCChhhhHHhhhcCCccCh
Q psy1644 540 NYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNA 576 (923)
Q Consensus 540 n~s~d~dVhfKYIeAA~k~gq~~EvERicresn~Ydp 576 (923)
....++++++.+-.+..+.|++.+..+..++.--.+|
T Consensus 79 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 79 LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred hCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 2233456667777777888888887776665433344
No 245
>3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.75A {Bacteroides vulgatus}
Probab=26.37 E-value=1.7e+02 Score=32.28 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=58.8
Q ss_pred eeecCCCccCCcc-eeEEeccccc--eEEEEe-eee--eEEEEecccceeeee------------------cccCCCcEE
Q psy1644 53 DVFFPPEAANDFP-VAMQVSAKYD--VVYLIT-KFG--YIHVYDIETATCIYM------------------NRISSDTIF 108 (923)
Q Consensus 53 d~~Fppe~~~DFP-vamqiS~k~G--~iyliT-K~G--~lhl~Dlet~t~iy~------------------~rIS~~~if 108 (923)
++.||++-..-++ -+|+..+.-| .||..- +.. -+++||++++.++-+ .-.+.|.||
T Consensus 15 ~i~~~ldd~~~~~~~~l~~~~~~~k~yL~~~N~~~~~~~i~~iDL~~~kl~k~i~~ekEGPNgi~~~~~~~~i~~~DsI~ 94 (369)
T 3s9j_A 15 QLAFPLDEQTYYLSKSMFQFEENGKEYLHFENTQKSLYDIVIFDIENQQIAKRIPLHKTGPNGLPAVFGSRPSPDSQYIL 94 (369)
T ss_dssp EEEEECCTTSCSCCSSEEEEEETTEEEEEEEECSTTCCEEEEEETTTTEEEEEEECBSSSTTBCTTCCCEEESSSTTSEE
T ss_pred eEEEccchhccccccceEEEecCCcEEEEEeCCCCCcCcEEEEECCCCceeeeeccccCCCCCcccceeeEEecCCCEEE
Confidence 6777877665433 3466555555 444444 445 899999999998721 123558999
Q ss_pred EeeccCCCcceEEEecCCcceeeeeeecee
Q psy1644 109 VTAPHEATGGIIGLTNVGINVGSVSFNTLT 138 (923)
Q Consensus 109 ~ta~~~~t~Gil~vn~~G~~~~si~~~t~t 138 (923)
+++..+ .|+..+|..|-...++.|.+..
T Consensus 95 i~~~~~--~~i~l~n~~G~~~~k~~~~~~~ 122 (369)
T 3s9j_A 95 VAQNNI--SRLSSINSQGEIIRNYNFQTPE 122 (369)
T ss_dssp EEEGGG--TEEEEECTTCCEEEEEECCCTT
T ss_pred EEeCCc--ceEEEECCCceEEEEEecCCCc
Confidence 988654 8999999999888888886664
No 246
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=26.05 E-value=1.6e+02 Score=26.84 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCcccccccchhhHHH----------HHHHHHHhcChhHHHHHHHHh
Q psy1644 437 LLQYFGILLDHGKLNKHESLELCRPVLAQ----------VIQSFAETGQFQKIVLYAKKV 486 (923)
Q Consensus 437 LL~YF~~LL~~g~LN~~ESlEL~rpVL~Q----------Vi~clae~Gqfdkiv~Y~~~v 486 (923)
++.-=..+++.|.. .+.++..+.++.. ...++.++|++++++.+.++.
T Consensus 9 ~~~~a~~~~~~g~~--~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 9 LLKQVSELLQQGEH--AQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp HHHHHHHHHHTTCH--HHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 34444455566643 4455555555544 556778899999998888775
No 247
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=26.04 E-value=1e+02 Score=26.08 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=16.0
Q ss_pred HHHHHHHhcChhHHHHHHHH
Q psy1644 466 VIQSFAETGQFQKIVLYAKK 485 (923)
Q Consensus 466 Vi~clae~Gqfdkiv~Y~~~ 485 (923)
...|+.++|++++++.+.++
T Consensus 33 lg~~~~~~~~~~~A~~~~~~ 52 (117)
T 3k9i_A 33 LGSTFRTLGEYRKAEAVLAN 52 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 56688889999999888665
No 248
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=25.96 E-value=52 Score=37.66 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=30.9
Q ss_pred ccccccEEEEEeccceEEEEecCCcceeeeecccC
Q psy1644 730 VSAKYDVVYLITKFGYIHVYDIETATCIYMNRISS 764 (923)
Q Consensus 730 vS~KyGvIyvITK~GflhlyDleTgt~Iy~nRIS~ 764 (923)
++..-|+||+-|..|+|+.||.+||+.+.+-+..+
T Consensus 493 ~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 493 LATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS 527 (582)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred eEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence 45567999999999999999999999999988743
No 249
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=25.57 E-value=94 Score=27.73 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=18.1
Q ss_pred HHHHHHHhcChhHHHHHHHH
Q psy1644 466 VIQSFAETGQFQKIVLYAKK 485 (923)
Q Consensus 466 Vi~clae~Gqfdkiv~Y~~~ 485 (923)
...|+.++|++++++.++++
T Consensus 69 la~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 69 MSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH
Confidence 67899999999999999877
No 250
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=25.53 E-value=8e+02 Score=28.05 Aligned_cols=135 Identities=7% Similarity=0.071 Sum_probs=69.4
Q ss_pred eEEEEEeccC--CCceEEEEECCCCC----CCcccccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccc-c
Q psy1644 231 KFICVREKIA--ESAQVVIIDMNDPT----NPIRRPISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKS-K 303 (923)
Q Consensus 231 kyICVRE~~~--~~~qVvIVDL~n~~----~v~Rrpi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~-K 303 (923)
+||.+-...+ ..++|.++|+.++. .....+..++.....|..+.|++.... .+....|.++++++.. +
T Consensus 280 ~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~-----~~~~~~l~~~d~~~~~~~ 354 (741)
T 1yr2_A 280 RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGD-----GAPLKKIVRVDLSGSTPR 354 (741)
T ss_dssp CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECT-----TCTTCEEEEEECSSSSCE
T ss_pred CEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECC-----CCCCCEEEEEeCCCCccc
Confidence 4555544332 45689999998762 122223333333344777778877321 1123568889987642 2
Q ss_pred cccccC-CC-ceeEEEeccCCeEEEEecC---eEEEEeccCCCCchhhhhcccCCC-CCeeEeeeeCCCCCeEEEEeee
Q psy1644 304 MKAHPM-TD-DVVFWKWISPNTLALVTET---SVYHWSMEGDSTPEKMFDRHSTLN-GCQIINYRTDPKQTWLLLIGIS 376 (923)
Q Consensus 304 LKs~~m-~E-~VvfWkWis~~tLglVT~t---aVYHWsi~g~s~P~K~FdR~~~L~-~~QIInYr~d~~~kW~~LvGI~ 376 (923)
.+...- .+ .+.-+.|.+...+...... .+|.++.+|. .+. .-.+. ...+.....+++.+++++..-+
T Consensus 355 ~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~-~~~-----~l~~~~~~~v~~~~~s~d~~~l~~~~ss 427 (741)
T 1yr2_A 355 FDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGK-PAG-----AVSLPGIGSASGLSGRPGDRHAYLSFSS 427 (741)
T ss_dssp EEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSC-EEE-----ECBCSSSCEEEEEECCBTCSCEEEEEEE
T ss_pred cEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC-cee-----eccCCCCeEEEEeecCCCCCEEEEEEcC
Confidence 222211 22 2334577755444444333 4566665443 111 11222 3456666777788888776543
No 251
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=25.48 E-value=56 Score=34.46 Aligned_cols=56 Identities=25% Similarity=0.322 Sum_probs=36.7
Q ss_pred cccccEEEEEeccceEEEEecCCcceeeeecc--------cC-----CceEEeeccCCCCcEEEEcC-CCeEE
Q psy1644 731 SAKYDVVYLITKFGYIHVYDIETATCIYMNRI--------SS-----DTIFVTAPHEATGGIIGVNR-KGQVL 789 (923)
Q Consensus 731 S~KyGvIyvITK~GflhlyDleTgt~Iy~nRI--------S~-----dtIFvta~~~~t~Gii~VNr-kGqVL 789 (923)
++.-+.+|+.+..|.|+.||..||+.+.+-.. +. +.+|+++. .+.+++++. .|+++
T Consensus 127 ~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~---dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 127 SPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSNG---DGLVVTVDSESGDVL 196 (369)
T ss_dssp ------EEEEEEEEEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEET---SCEEEEECTTTCCEE
T ss_pred cccCCEEEEEecCCEEEEEECCCCCEEEeEecccccCccccCCccccceEEEECC---CCEEEEEECCCCcEE
Confidence 44668999999999999999999998866432 22 45666543 366778874 57664
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=25.28 E-value=54 Score=37.98 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=31.1
Q ss_pred ccccccEEEEEeccceEEEEecCCcceeeeecccC
Q psy1644 730 VSAKYDVVYLITKFGYIHVYDIETATCIYMNRISS 764 (923)
Q Consensus 730 vS~KyGvIyvITK~GflhlyDleTgt~Iy~nRIS~ 764 (923)
++..-|++|+-|..|+|+.||.+||+.+.+-+...
T Consensus 480 ~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred eEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCC
Confidence 55678999999999999999999999999988643
No 253
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=25.18 E-value=2.1e+02 Score=34.19 Aligned_cols=79 Identities=9% Similarity=0.059 Sum_probs=54.1
Q ss_pred ceeeeeeeeccccccEEEEEeccceEEEEecCCcceeeeecccCCceEEeeccCCCCcEEEEcCCCeEEEEEecCCcccc
Q psy1644 721 KYIEIYVQKVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSVSVDEDNIIP 800 (923)
Q Consensus 721 ~~~~i~~~qvS~KyGvIyvITK~GflhlyDleTgt~Iy~nRIS~dtIFvta~~~~t~Gii~VNrkGqVL~V~Ide~~iVp 800 (923)
|--+|.....++ -..+.-.+..|-|++||++++.++..-. ..+.|...+.+....=++.-..+|.|.-..++...+.+
T Consensus 57 ~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~ 134 (902)
T 2oaj_A 57 DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS 134 (902)
T ss_dssp SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 334566666777 3357777899999999999999987654 23456555554444445555688888888877776655
Q ss_pred c
Q psy1644 801 Y 801 (923)
Q Consensus 801 Y 801 (923)
|
T Consensus 135 ~ 135 (902)
T 2oaj_A 135 F 135 (902)
T ss_dssp E
T ss_pred c
Confidence 5
No 254
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=24.96 E-value=48 Score=29.90 Aligned_cols=27 Identities=7% Similarity=0.001 Sum_probs=14.8
Q ss_pred CcchhhHHHHHHHhcCChhhhHHhhhc
Q psy1644 544 DQEVHFKYIQAACKTGQIKEVERICRE 570 (923)
Q Consensus 544 d~dVhfKYIeAA~k~gq~~EvERicre 570 (923)
+++..+..-.+-.+.|+++|.....+.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (184)
T 3vtx_A 106 YADAYYKLGLVYDSMGEHDKAIEAYEK 132 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 344444444555666777666555443
No 255
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=24.96 E-value=1.9e+02 Score=31.18 Aligned_cols=105 Identities=13% Similarity=0.145 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCCCCcccccccchhhHHH-HHHHHHHhcChhHHHHHHHHhCCCccHHHHHHHHHhcCCchhhHHHHhhhc
Q psy1644 438 LQYFGILLDHGKLNKHESLELCRPVLAQ-VIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQ 516 (923)
Q Consensus 438 L~YF~~LL~~g~LN~~ESlEL~rpVL~Q-Vi~clae~Gqfdkiv~Y~~~vgytpDy~~LL~~i~~~nP~~a~efA~~L~~ 516 (923)
..||..++.+...-.+.+.|-.|+-+.= ++.+|.-.|+.+.+ +-+++++|...+-+
T Consensus 24 ~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~~L~lLg~l~~~-----------------------~r~~~i~~l~s~Q~ 80 (331)
T 3dss_B 24 ADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRM-----------------------NKEEILVFIKSCQH 80 (331)
T ss_dssp HHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGGS-----------------------CHHHHHHHHHHTBC
T ss_pred HHHHHHhccCCCCccceeccccHHHHHHHHHHHHHHhCCCchh-----------------------hHHHHHHHHhhhcC
Confidence 4688776543333466677888886665 88999999976532 22344444444433
Q ss_pred CCCCCcCccccchhhhhhhcccccccCCcchhhHH--HHHHHhcCChhhhHHhhhcCCccChHHHHhHHhhccCCCC
Q psy1644 517 DDEPLADINQSYEGLFYFLGSIVNYSQDQEVHFKY--IQAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQ 591 (923)
Q Consensus 517 ~~~pl~di~~~~egLyy~Lgsivn~s~d~dVhfKY--IeAA~k~gq~~EvERicresn~YdpekvKnfLKeakL~d~ 591 (923)
+++.+ . |+ ..+|+.+.+.| |++-+-.+.+.++ |-+|.-+||+....+|-
T Consensus 81 ~dGGF-----------~--g~---~g~~~~l~~Ty~Al~~L~~l~~~~~i----------d~~k~~~fL~~~Q~~DG 131 (331)
T 3dss_B 81 ECGGV-----------S--AS---IGHDPHLLYTLSAVQILTLYDSIHVI----------NVDKVVAYVQSLQKEDG 131 (331)
T ss_dssp TTSCB-----------B--SS---TTSCBCHHHHHHHHHHHHHTTCGGGS----------CHHHHHHHHHHTBCTTS
T ss_pred CCCCc-----------C--CC---CCCCccHHHHHHHHHHHHHcCCccHH----------HHHHHHHHHhccCCCCC
Confidence 32211 0 11 13678889988 7777777665443 46889999999887764
No 256
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=24.83 E-value=1.1e+02 Score=31.71 Aligned_cols=61 Identities=10% Similarity=0.175 Sum_probs=37.7
Q ss_pred cEEEEEeccceEEEEecCCcceeeeecccCCceEEeeccCCCCcEEEEcCCCeEEEEEecC
Q psy1644 735 DVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSVSVDE 795 (923)
Q Consensus 735 GvIyvITK~GflhlyDleTgt~Iy~nRIS~dtIFvta~~~~t~Gii~VNrkGqVL~V~Ide 795 (923)
.++.++|+.|||.=-....-...-++-=.+|.+--...-+..+-++.++++|+++.+.+.+
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~e 63 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPIT 63 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGG
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHH
Confidence 4678899999997665433111111112333332222223356799999999999999887
No 257
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=24.65 E-value=8.4 Score=32.86 Aligned_cols=29 Identities=21% Similarity=-0.008 Sum_probs=24.1
Q ss_pred hhccCccccceeee-eccccCCHHHhhhhhcc
Q psy1644 624 VQKGRKHLLEKWLK-EEKLECSEELGDLVKQS 654 (923)
Q Consensus 624 vqkvNp~~tP~Vvg-LlD~dc~E~~Ik~LL~s 654 (923)
|+++.|..++++-| ||++|-+| +-.||.|
T Consensus 13 V~~~~p~~A~KITGMLLE~d~~e--ll~ll~~ 42 (61)
T 1i2t_A 13 VQAMQPAFASKITGMLLELSPAQ--LLLLLAS 42 (61)
T ss_dssp HHHHCGGGHHHHHHHHTTSCHHH--HHHHHHC
T ss_pred HHHhCcccccchhhhhccCCHHH--HHHHHcC
Confidence 56789999999999 99998776 4567666
No 258
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=24.42 E-value=1.3e+02 Score=32.73 Aligned_cols=39 Identities=8% Similarity=-0.001 Sum_probs=29.1
Q ss_pred ccccccchhhHHH----------HHHHHHHhcChhHHHHHHHHh-CCCcc
Q psy1644 453 HESLELCRPVLAQ----------VIQSFAETGQFQKIVLYAKKV-GYSPD 491 (923)
Q Consensus 453 ~ESlEL~rpVL~Q----------Vi~clae~Gqfdkiv~Y~~~v-gytpD 491 (923)
.+.++..+-+|.. ...++.++|++++++.+.++. ...|+
T Consensus 120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 169 (474)
T 4abn_A 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN 169 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566666666554 677899999999999998776 45676
No 259
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=24.41 E-value=3.3e+02 Score=29.77 Aligned_cols=74 Identities=11% Similarity=0.137 Sum_probs=45.3
Q ss_pred cCCcceeEEecc---ccceEEEEeeeeeEEEEeccccee------eeecccC--CCcEEEeeccCCCcceEEEecCCcce
Q psy1644 61 ANDFPVAMQVSA---KYDVVYLITKFGYIHVYDIETATC------IYMNRIS--SDTIFVTAPHEATGGIIGLTNVGINV 129 (923)
Q Consensus 61 ~~DFPvamqiS~---k~G~iyliTK~G~lhl~Dlet~t~------iy~~rIS--~~~if~ta~~~~t~Gil~vn~~G~~~ 129 (923)
.+|.-++|-.-. ....++++|+.||+.-..++.=.. +.+ ++. ++.|.+... ....-++.+++.| +.
T Consensus 97 ~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai-~L~~~d~lv~v~~~-~~~~~i~l~T~~G-~~ 173 (370)
T 3l6v_A 97 SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAI-NLDEGDALVGVALT-DGDRDVLLFASNG-KT 173 (370)
T ss_dssp TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESS-CCCTTCCEEEEEEE-CSCCEEEEEETTS-EE
T ss_pred CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEE-EeCCCCEEEEEEEe-CCCceEEEEeCCC-eE
Confidence 478888887643 234899999999999988754221 111 222 233333322 2344688888888 56
Q ss_pred eeeeeece
Q psy1644 130 GSVSFNTL 137 (923)
Q Consensus 130 ~si~~~t~ 137 (923)
.-+..+++
T Consensus 174 irf~~~~v 181 (370)
T 3l6v_A 174 VRFGESTV 181 (370)
T ss_dssp EEEEGGGS
T ss_pred EEEEcccc
Confidence 66666555
No 260
>2h4p_B MENT, heterochromatin-associated protein MENT; serine protease inhibitor, serpin, hydrolase inhibitor; 1.70A {Gallus gallus} PDB: 2h4q_B
Probab=23.97 E-value=54 Score=24.27 Aligned_cols=19 Identities=11% Similarity=0.340 Sum_probs=16.6
Q ss_pred EEEEecCCcceeeeecccC
Q psy1644 746 IHVYDIETATCIYMNRISS 764 (923)
Q Consensus 746 lhlyDleTgt~Iy~nRIS~ 764 (923)
..++|-+|++.+|+.|+++
T Consensus 13 f~I~~~~t~~iLF~G~v~~ 31 (34)
T 2h4p_B 13 FFIRHNKSKTILFFGRFCC 31 (34)
T ss_dssp EEEEETTTTEEEEEEEECS
T ss_pred EEEEECCCCeEEEEEEeCC
Confidence 4578999999999999986
No 261
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=23.94 E-value=2.2e+02 Score=29.16 Aligned_cols=105 Identities=11% Similarity=0.021 Sum_probs=55.8
Q ss_pred HHHHHHHhcChhHHHHHHHHh-CCCccHH---HHHHH-----------------HHhcCCchhhHHHHhhhcCCCCCcCc
Q psy1644 466 VIQSFAETGQFQKIVLYAKKV-GYSPDYV---FLLRN-----------------VMRVNPDQGVGFAQMLVQDDEPLADI 524 (923)
Q Consensus 466 Vi~clae~Gqfdkiv~Y~~~v-gytpDy~---~LL~~-----------------i~~~nP~~a~efA~~L~~~~~pl~di 524 (923)
...++.++|++++++.+.++. ...|+.. ..... .-.-+.++|.+....+....+...+.
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 677888999999999988776 3456433 22111 11235566666555444322111100
Q ss_pred cc-----------cchhhhhhhcccccccCCcchhhHHHHHHHhcCChhhhHHhhhc
Q psy1644 525 NQ-----------SYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRE 570 (923)
Q Consensus 525 ~~-----------~~egLyy~Lgsivn~s~d~dVhfKYIeAA~k~gq~~EvERicre 570 (923)
-. ..+.+-+|-..+-....+++..+.......+.|++.+.....++
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00 01111111111112234567777777888888888887766554
No 262
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=23.86 E-value=1.7e+02 Score=31.37 Aligned_cols=60 Identities=12% Similarity=0.141 Sum_probs=39.6
Q ss_pred cEEEEEeccceEEEEecCC--------cceeeeecccCCceEEeeccCCCCcEEEEcCCCeEEEEEecC
Q psy1644 735 DVVYLITKFGYIHVYDIET--------ATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSVSVDE 795 (923)
Q Consensus 735 GvIyvITK~GflhlyDleT--------gt~Iy~nRIS~dtIFvta~~~~t~Gii~VNrkGqVL~V~Ide 795 (923)
..++++|+.||+.-..++. |.....-+=-++.+++..- +...-++.++++|+++.+.+++
T Consensus 107 ~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~-~~~~~i~l~T~~G~~irf~~~e 174 (323)
T 1wp5_A 107 GYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLT-DGMNELFLVTHNGYALWFDESE 174 (323)
T ss_dssp CEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEE-CSCSEEEEEETTSEEEEEEGGG
T ss_pred ceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEe-CCCCEEEEEeCCCcEEEEEHHH
Confidence 3588999999999998852 2222211111334443322 3345699999999999999887
No 263
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=23.17 E-value=2.1e+02 Score=28.06 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=11.0
Q ss_pred cEEEEEeccceEEEEecCCccee
Q psy1644 735 DVVYLITKFGYIHVYDIETATCI 757 (923)
Q Consensus 735 GvIyvITK~GflhlyDleTgt~I 757 (923)
|-+|+.| .|-|++||.+ |..+
T Consensus 229 G~l~v~~-~~~v~~~~~~-g~~~ 249 (296)
T 3e5z_A 229 GLIWASA-GDGVHVLTPD-GDEL 249 (296)
T ss_dssp SCEEEEE-TTEEEEECTT-SCEE
T ss_pred CCEEEEc-CCeEEEECCC-CCEE
Confidence 4455555 5555555554 4443
No 264
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=23.01 E-value=2.5e+02 Score=29.19 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=28.3
Q ss_pred CCcceeEEeccccceEEEEeeeeeEEEEeccc
Q psy1644 62 NDFPVAMQVSAKYDVVYLITKFGYIHVYDIET 93 (923)
Q Consensus 62 ~DFPvamqiS~k~G~iyliTK~G~lhl~Dlet 93 (923)
+|.-++|-+....+-+.++|+.|+..-..++.
T Consensus 165 ~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 165 NDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp TCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 79999998877778999999999999998865
No 265
>1hle_B Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Probab=22.83 E-value=59 Score=23.56 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=16.0
Q ss_pred EEEEecCCcceeeeecccC
Q psy1644 746 IHVYDIETATCIYMNRISS 764 (923)
Q Consensus 746 lhlyDleTgt~Iy~nRIS~ 764 (923)
..++|-+|++.+|+.|+++
T Consensus 12 f~I~~~~t~~iLF~G~v~~ 30 (31)
T 1hle_B 12 FFIRHNPSANILFLGRFSS 30 (31)
T ss_dssp EEEEETTTTEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEEecC
Confidence 3478999999999999874
No 266
>2xn6_B Thyroxine-binding globulin; transport, cleaved protein; HET: F6Y T44; 1.29A {Homo sapiens} PDB: 2xn5_B* 2xn7_B*
Probab=22.80 E-value=58 Score=24.35 Aligned_cols=20 Identities=5% Similarity=0.383 Sum_probs=17.0
Q ss_pred EEEEecCCcceeeeecccCC
Q psy1644 746 IHVYDIETATCIYMNRISSD 765 (923)
Q Consensus 746 lhlyDleTgt~Iy~nRIS~d 765 (923)
..++|-+|++.+|+.|+.+-
T Consensus 13 f~I~~~~t~~iLF~G~v~~P 32 (35)
T 2xn6_B 13 LLILERSTRSILFLGKVVNP 32 (35)
T ss_dssp EEEEETTTTEEEEEEEESCT
T ss_pred EEEEECCCCcEEEEEEeCCc
Confidence 35789999999999999863
No 267
>3ndd_B Alpha-1-antitrypsin; serpin, hydrolase inhibitor; 1.50A {Homo sapiens} PDB: 1ezx_B 3ndf_B 7api_B* 8api_B* 9api_B* 2d26_B
Probab=22.78 E-value=62 Score=24.39 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=16.5
Q ss_pred EEEecCCcceeeeecccCC
Q psy1644 747 HVYDIETATCIYMNRISSD 765 (923)
Q Consensus 747 hlyDleTgt~Iy~nRIS~d 765 (923)
.++|-.|++.+|+.|+.+-
T Consensus 15 ~I~~~~t~~iLF~G~v~~P 33 (36)
T 3ndd_B 15 LMIEQNTKSPLFMGKVVNP 33 (36)
T ss_dssp EEEETTTCCEEEEEEESSC
T ss_pred EEEECCCCcEEEEEEecCC
Confidence 4689999999999999863
No 268
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=22.24 E-value=6.9e+02 Score=26.45 Aligned_cols=120 Identities=17% Similarity=0.124 Sum_probs=0.0
Q ss_pred cCCccEEEEEecCCCCCCCCCcccceeeeecCCCccCCcceeEEeccccceEEEEe-eeeeEEEEeccc-----------
Q psy1644 26 TPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYDVVYLIT-KFGYIHVYDIET----------- 93 (923)
Q Consensus 26 ~~~~gkLhiiEig~~~~g~~~f~kK~vd~~Fppe~~~DFPvamqiS~k~G~iyliT-K~G~lhl~Dlet----------- 93 (923)
+...|+|+++++.+... .+.+ +|| .-|..++.+... -||+.| +.+.+++||.+|
T Consensus 71 tG~~g~v~~iD~~Tgkv------~~~~---l~~---~~FgeGit~~g~--~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~ 136 (268)
T 3nok_A 71 TGHQGTLRQLSLESAQP------VWME---RLG---NIFAEGLASDGE--RLYQLTWTEGLLFTWSGMPPQRERTTRYSG 136 (268)
T ss_dssp ETTTTEEEECCSSCSSC------SEEE---ECT---TCCEEEEEECSS--CEEEEESSSCEEEEEETTTTEEEEEEECSS
T ss_pred cCCCCEEEEEECCCCcE------EeEE---CCC---CcceeEEEEeCC--EEEEEEccCCEEEEEECCcCcEEEEEeCCC
Q ss_pred --------ceeeeecccCCCcEEEeeccCCCcceEEEecCCcceeeeeeeceeecccceeEEEecccccceEEEEecCC
Q psy1644 94 --------ATCIYMNRISSDTIFVTAPHEATGGIIGLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMND 164 (923)
Q Consensus 94 --------~t~iy~~rIS~~~if~ta~~~~t~Gil~vn~~G~~~~si~~~t~tm~sdk~ic~~~~~~~~~~vviid~~~ 164 (923)
|..+|+--=|+...|+-+..-.--+-|.|...|-.+..+ ++++.-..+ +.-++-.+..|++||...
T Consensus 137 eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~l--NeLe~~dG~---lyanvw~s~~I~vIDp~T 210 (268)
T 3nok_A 137 EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELI--NELECANGV---IYANIWHSSDVLEIDPAT 210 (268)
T ss_dssp CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE--EEEEEETTE---EEEEETTCSEEEEECTTT
T ss_pred ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccc--cccEEeCCE---EEEEECCCCeEEEEeCCC
No 269
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=22.20 E-value=2.7e+02 Score=29.86 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=29.4
Q ss_pred CCcceeEEeccccceEEEEeeeeeEEEEecc
Q psy1644 62 NDFPVAMQVSAKYDVVYLITKFGYIHVYDIE 92 (923)
Q Consensus 62 ~DFPvamqiS~k~G~iyliTK~G~lhl~Dle 92 (923)
+|+.+++.....+.-|.++|+.|++.-|.++
T Consensus 145 ~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~ 175 (327)
T 3uc1_A 145 NDELVGAVLCSAGDDLLLVSANGQSIRFSAT 175 (327)
T ss_dssp TCCEEEEEEECTTCEEEEEETTSEEEEEECC
T ss_pred CCEEEEEEEecCCCEEEEEECCCeEEEEECc
Confidence 8999999998899999999999999999988
No 270
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=22.00 E-value=1.2e+02 Score=24.23 Aligned_cols=88 Identities=9% Similarity=-0.094 Sum_probs=49.1
Q ss_pred HHHHHHHhcChhHHHHHHHHhC-CCcc---HHHHHHHH--HhcCCchhhHHHHhhhcCCCCCcCccccchhhhhhhcccc
Q psy1644 466 VIQSFAETGQFQKIVLYAKKVG-YSPD---YVFLLRNV--MRVNPDQGVGFAQMLVQDDEPLADINQSYEGLFYFLGSIV 539 (923)
Q Consensus 466 Vi~clae~Gqfdkiv~Y~~~vg-ytpD---y~~LL~~i--~~~nP~~a~efA~~L~~~~~pl~di~~~~egLyy~Lgsiv 539 (923)
...++.+.|++++++.+.++.- ..|+ ....+-.+ ..-+.++|.+......+.
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------------- 67 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---------------------- 67 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------------
Confidence 4567788999999999877652 2332 11111111 122444444444333321
Q ss_pred cccCCcchhhHHHHHHHhcCChhhhHHhhhcCCccCh
Q psy1644 540 NYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNA 576 (923)
Q Consensus 540 n~s~d~dVhfKYIeAA~k~gq~~EvERicresn~Ydp 576 (923)
...++++++.+-.+..+.|++++..+..++.--.+|
T Consensus 68 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 68 -KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred -CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 123456667777777888888887776665444444
No 271
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=21.94 E-value=9e+02 Score=27.33 Aligned_cols=71 Identities=3% Similarity=-0.051 Sum_probs=36.0
Q ss_pred eeeecceEEEEEeccCCCceEEEEECCCCCCCcccccCcc----ccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccc
Q psy1644 225 LTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISAD----SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEM 300 (923)
Q Consensus 225 lTmESDkyICVRE~~~~~~qVvIVDL~n~~~v~Rrpi~AD----SAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~ 300 (923)
+++.+++.+. -...++..++.++|+... ...+-+.... +.-.+|..+.+++..... ....++.+||+++
T Consensus 325 ~~~~~~~lv~-~~~~dg~~~l~~~~~~g~-~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~-----~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 325 VSIVGGHLSL-EYLKDATSEVRVATLKGK-PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSF-----TTPRQIYKTSVST 397 (695)
T ss_dssp EEEETTEEEE-EEEETTEEEEEEEETTCC-EEEECCCSSSSEECCCBSCTTCSEEEEEEEET-----TEEEEEEEEETTT
T ss_pred EEEECCEEEE-EEEECCEEEEEEEeCCCC-eeEEecCCCCeEEEEeecCCCCCEEEEEEcCC-----CCCCEEEEEECCC
Confidence 4444444433 333345568889997532 1211111111 223467777777764211 1245788888876
Q ss_pred cc
Q psy1644 301 KS 302 (923)
Q Consensus 301 K~ 302 (923)
++
T Consensus 398 g~ 399 (695)
T 2bkl_A 398 GK 399 (695)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 272
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=21.90 E-value=5.9e+02 Score=25.79 Aligned_cols=78 Identities=12% Similarity=0.083 Sum_probs=50.0
Q ss_pred CCeEEEEecccccccccccCCCceeEEEeccCCeEEEEecCeEEEEeccCCCCchhhhhcccCCCCCeeEeeeeCCCCCe
Q psy1644 290 PKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTW 369 (923)
Q Consensus 290 g~~LQIFNle~K~KLKs~~m~E~VvfWkWis~~tLglVT~taVYHWsi~g~s~P~K~FdR~~~L~~~QIInYr~d~~~kW 369 (923)
+..|..|+.++++ .+.+.+++.+..-.|-.+..+-+.+...||.|+..+.. ...+.+.........+-.-..|++++.
T Consensus 70 ~~~i~~~d~~~~~-~~~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~-~~~~~~~~~~~~~~~~~~i~~d~~G~l 147 (326)
T 2ghs_A 70 ERELHELHLASGR-KTVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGV-LTLHAELESDLPGNRSNDGRMHPSGAL 147 (326)
T ss_dssp GTEEEEEETTTTE-EEEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCC-EEEEECSSTTCTTEEEEEEEECTTSCE
T ss_pred CCEEEEEECCCCc-EEEEECCCcceEEEEeCCCeEEEEECCCEEEEECCCCc-EEEEeeCCCCCCCCCCCCEEECCCCCE
Confidence 4567778877643 34455667777777888888888888899999985432 112222111223346777788888873
No 273
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=21.65 E-value=9.3e+02 Score=27.41 Aligned_cols=103 Identities=14% Similarity=0.174 Sum_probs=50.9
Q ss_pred ceEEEEEeccCCCceEEEEECCCCCCCc-c--cccCccccccCCCccEEEEeccCCCCCCCCCCCeEEEEeccccccccc
Q psy1644 230 DKFICVREKIAESAQVVIIDMNDPTNPI-R--RPISADSAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKA 306 (923)
Q Consensus 230 DkyICVRE~~~~~~qVvIVDL~n~~~v~-R--rpi~ADSAIMnP~~~IIALra~~~~~n~~~~g~~LQIFNle~K~KLKs 306 (923)
++++-+-...+...+|+.+|++++.... + -|-..+.--+.|..+-|++-..- + ....|.+++++.+. .+.
T Consensus 292 ~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~---~---g~~~l~~~d~~g~~-~~~ 364 (693)
T 3iuj_A 292 STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMV---D---ATARVEQFDYEGKR-VRE 364 (693)
T ss_dssp TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEE---T---TEEEEEEECTTSCE-EEE
T ss_pred CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEE---C---CeeEEEEEECCCCe-eEE
Confidence 4443333333345688889988764210 1 11111211344555545443210 1 22478999998553 344
Q ss_pred ccCCCc--eeEEEec-cCCeEEEEe-----cCeEEEEeccC
Q psy1644 307 HPMTDD--VVFWKWI-SPNTLALVT-----ETSVYHWSMEG 339 (923)
Q Consensus 307 ~~m~E~--VvfWkWi-s~~tLglVT-----~taVYHWsi~g 339 (923)
..+++. +....|- +.+.|.+.. +..+|.|++.+
T Consensus 365 l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 365 VALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp ECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred eecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence 445443 2222221 345565553 36899999854
No 274
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=21.40 E-value=3e+02 Score=26.75 Aligned_cols=68 Identities=9% Similarity=0.004 Sum_probs=42.1
Q ss_pred cccEEEEEe-ccceEEEEecCCcceeeeecccCCceEEeeccCCCCc-EEEEc-CCCeEEEEEecCCccccc
Q psy1644 733 KYDVVYLIT-KFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGG-IIGVN-RKGQVLSVSVDEDNIIPY 801 (923)
Q Consensus 733 KyGvIyvIT-K~GflhlyDleTgt~Iy~nRIS~dtIFvta~~~~t~G-ii~VN-rkGqVL~V~Ide~~iVpY 801 (923)
+.|-+|+.+ ..|-|+.||.+||..+..-......+.-.+- +..+. ++..+ ..|.|..+.++...+-++
T Consensus 235 ~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~-~~dg~~l~v~~~~~~~l~~~~~~~~g~~~~ 305 (314)
T 1pjx_A 235 EDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF-KPQTKTIFVTEHENNAVWKFEWQRNGKKQY 305 (314)
T ss_dssp TTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE-CTTSSEEEEEETTTTEEEEEECSSCBCCCG
T ss_pred CCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEE-CCCCCEEEEEeCCCCeEEEEeCCCCCcccc
Confidence 467888887 4678999999999876544444333332232 33344 44443 457888888776554443
No 275
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=21.06 E-value=3e+02 Score=21.56 Aligned_cols=92 Identities=13% Similarity=0.048 Sum_probs=0.0
Q ss_pred CCCCchHHHHHHHHHhcCCCCcccccccchhhHHH----------HHHHHHHhcChhHHHHHHHHhCCCccHHHHHHHHH
Q psy1644 431 AGQTSPLLQYFGILLDHGKLNKHESLELCRPVLAQ----------VIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVM 500 (923)
Q Consensus 431 pGq~sPLL~YF~~LL~~g~LN~~ESlEL~rpVL~Q----------Vi~clae~Gqfdkiv~Y~~~vgytpDy~~LL~~i~ 500 (923)
|+....+...-..++..| +..++++..+-++.. ...++.+.|++++++.+.++ .+
T Consensus 3 p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-------------a~ 67 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAG--NYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNY-------------VI 67 (112)
T ss_dssp CSSTTGGGGHHHHHHSSC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------HH
T ss_pred CCcHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHH-------------HH
Q ss_pred hcCCc--hhhHHHHhhhcCCCCCcCccccchhhhhhhccccccc-CCcchhhHHHHHHHhcC
Q psy1644 501 RVNPD--QGVGFAQMLVQDDEPLADINQSYEGLFYFLGSIVNYS-QDQEVHFKYIQAACKTG 559 (923)
Q Consensus 501 ~~nP~--~a~efA~~L~~~~~pl~di~~~~egLyy~Lgsivn~s-~d~dVhfKYIeAA~k~g 559 (923)
..+|+ .. ..++.+|.+.... .+.+--.+|++.+.+..
T Consensus 68 ~~~~~~~~~----------------------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 68 NVIEDEYNK----------------------DVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTSCCTTCH----------------------HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HhCcccchH----------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
No 276
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=21.00 E-value=2.8e+02 Score=33.60 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=59.5
Q ss_pred ccceeeeecCCCccCCcceeEEeccccce--EEEEeeeeeEEEEecc-------------------------cceeeeec
Q psy1644 48 AKKAVDVFFPPEAANDFPVAMQVSAKYDV--VYLITKFGYIHVYDIE-------------------------TATCIYMN 100 (923)
Q Consensus 48 ~kK~vd~~Fppe~~~DFPvamqiS~k~G~--iyliTK~G~lhl~Dle-------------------------t~t~iy~~ 100 (923)
..+.+-+.||....+..+ ++..++.+|. |++||+-|.+|-..+. --.+-++-
T Consensus 89 ~~~ti~i~FP~~i~~p~~-~f~~~e~~d~L~I~vIt~s~~lytl~L~~dff~~~~~~~~~~W~k~~~Py~F~~R~Ph~L~ 167 (729)
T 3f7f_A 89 HGKTINIHLPNASMNQRY-TLTIQEVEQQLLVNVILKDGSFLTLQLPLSFLFSSANTLNGEWFHLQNPYDFTVRVPHFLF 167 (729)
T ss_dssp TSCEEEEECSSCBTTGGG-GEEEEECSSEEEEEEEBSSSCEEEEEEEHHHHHSCCSCCCSCCBCCCCCSCTTTSCEEEEE
T ss_pred CCCEEEEECCccccCCCc-eEEecCCCCEEEEEEEccCCcEEEEEEcHHHhcCccccCchhhceeecCCcccccCCcEEE
Confidence 467899999999998888 8999988776 7789999999876553 34466777
Q ss_pred ccCCCcEEEeeccCCCcceEEEecCC
Q psy1644 101 RISSDTIFVTAPHEATGGIIGLTNVG 126 (923)
Q Consensus 101 rIS~~~if~ta~~~~t~Gil~vn~~G 126 (923)
.+|++.++++-.+ ||++.+.+..
T Consensus 168 avs~~~liVsL~D---GGLLrL~r~~ 190 (729)
T 3f7f_A 168 YVSPQFSVVFLED---GGLLGLKKVD 190 (729)
T ss_dssp ECSSSBEEEEETT---SCEECCEESS
T ss_pred EECCCeEEEEEcC---CCEEEEEecc
Confidence 8888887777633 8999988773
No 277
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=21.00 E-value=1.4e+02 Score=30.24 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=45.2
Q ss_pred CCCCchHHHHHHHHHhcCCCCcccccccchhhHHH----------HHHHHHHhcChhHHHHHHHHh-CCCcc----HHHH
Q psy1644 431 AGQTSPLLQYFGILLDHGKLNKHESLELCRPVLAQ----------VIQSFAETGQFQKIVLYAKKV-GYSPD----YVFL 495 (923)
Q Consensus 431 pGq~sPLL~YF~~LL~~g~LN~~ESlEL~rpVL~Q----------Vi~clae~Gqfdkiv~Y~~~v-gytpD----y~~L 495 (923)
|.....++..-..++..|.+. +..++.+.++.. ...++.++|++++++.+.++. ...|| |..+
T Consensus 30 p~~~~~~~~l~~~~~~~~~~~--~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 107 (388)
T 1w3b_A 30 PDNTGVLLLLSSIHFQCRRLD--RSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 333344444444445555432 334444443333 667888999999999988775 34564 3333
Q ss_pred HHHHHh-cCCchhhHHHHhhhc
Q psy1644 496 LRNVMR-VNPDQGVGFAQMLVQ 516 (923)
Q Consensus 496 L~~i~~-~nP~~a~efA~~L~~ 516 (923)
-....+ -++++|.+......+
T Consensus 108 ~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 108 AAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 322222 266666665544443
No 278
>4afx_B Protein Z dependent protease inhibitor; hydrolase inhibitor, serpin, protein Z dependent inhibitor, coagulation; 2.09A {Homo sapiens} PDB: 4aju_B
Probab=20.88 E-value=66 Score=24.22 Aligned_cols=19 Identities=11% Similarity=0.483 Sum_probs=16.6
Q ss_pred EEEecCCcceeeeecccCC
Q psy1644 747 HVYDIETATCIYMNRISSD 765 (923)
Q Consensus 747 hlyDleTgt~Iy~nRIS~d 765 (923)
.++|-.|++.+|+.|+.+-
T Consensus 15 ~I~~~~t~~iLF~G~v~~P 33 (36)
T 4afx_B 15 MIYEETSGMLLFLGRVVNP 33 (36)
T ss_dssp EEEETTTTEEEEEEEESCT
T ss_pred EEEECCCCcEEEEEEecCC
Confidence 4689999999999999864
No 279
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=20.63 E-value=3.5e+02 Score=28.49 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=25.5
Q ss_pred CCcceeEEecc---ccceEEEEeeeeeEEEEeccc
Q psy1644 62 NDFPVAMQVSA---KYDVVYLITKFGYIHVYDIET 93 (923)
Q Consensus 62 ~DFPvamqiS~---k~G~iyliTK~G~lhl~Dlet 93 (923)
+|..++|-.-. ...-++++|+.|++.-..++.
T Consensus 99 ~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~ 133 (312)
T 1suu_A 99 QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTD 133 (312)
T ss_dssp TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHH
Confidence 78888886543 356688999999999998864
No 280
>2h4p_B MENT, heterochromatin-associated protein MENT; serine protease inhibitor, serpin, hydrolase inhibitor; 1.70A {Gallus gallus} PDB: 2h4q_B
Probab=20.57 E-value=69 Score=23.70 Aligned_cols=18 Identities=11% Similarity=0.329 Sum_probs=15.8
Q ss_pred EEecccceeeeecccCCC
Q psy1644 88 VYDIETATCIYMNRISSD 105 (923)
Q Consensus 88 l~Dlet~t~iy~~rIS~~ 105 (923)
|+|-+|++++++||+++.
T Consensus 15 I~~~~t~~iLF~G~v~~P 32 (34)
T 2h4p_B 15 IRHNKSKTILFFGRFCCP 32 (34)
T ss_dssp EEETTTTEEEEEEEECSC
T ss_pred EEECCCCeEEEEEEeCCC
Confidence 578899999999999874
No 281
>2xn6_B Thyroxine-binding globulin; transport, cleaved protein; HET: F6Y T44; 1.29A {Homo sapiens} PDB: 2xn5_B* 2xn7_B*
Probab=20.43 E-value=68 Score=23.97 Aligned_cols=18 Identities=6% Similarity=0.409 Sum_probs=15.9
Q ss_pred EEecccceeeeecccCCC
Q psy1644 88 VYDIETATCIYMNRISSD 105 (923)
Q Consensus 88 l~Dlet~t~iy~~rIS~~ 105 (923)
++|-+|++++++||+++.
T Consensus 15 I~~~~t~~iLF~G~v~~P 32 (35)
T 2xn6_B 15 ILERSTRSILFLGKVVNP 32 (35)
T ss_dssp EEETTTTEEEEEEEESCT
T ss_pred EEECCCCcEEEEEEeCCc
Confidence 578999999999999874
No 282
>1as4_B Antichymotrypsin, ACT; serpin, serine protease inhibitor; 2.10A {Homo sapiens} SCOP: e.1.1.1 PDB: 2ach_B* 3caa_B 4caa_B
Probab=20.25 E-value=57 Score=24.74 Aligned_cols=20 Identities=10% Similarity=0.404 Sum_probs=16.9
Q ss_pred EEEEecCCcceeeeecccCC
Q psy1644 746 IHVYDIETATCIYMNRISSD 765 (923)
Q Consensus 746 lhlyDleTgt~Iy~nRIS~d 765 (923)
..++|-.|++.+|+.|+++-
T Consensus 15 f~I~~~~t~~iLF~G~v~~P 34 (37)
T 1as4_B 15 MIIVPTDTQNIFFMSKVTNP 34 (37)
T ss_dssp EEEEETTSSCCSEEEEESCT
T ss_pred EEEEeCCCCcEEEEEEeCCC
Confidence 34689999999999999863
No 283
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=20.24 E-value=2.4e+02 Score=25.40 Aligned_cols=85 Identities=13% Similarity=0.066 Sum_probs=46.4
Q ss_pred HHHHHHHhcChhHHHHHHHHhC-CCcc----HHHHHHHHHh--cCCchhhHHHHhhhcCCCCCcCccccchhhhhhhccc
Q psy1644 466 VIQSFAETGQFQKIVLYAKKVG-YSPD----YVFLLRNVMR--VNPDQGVGFAQMLVQDDEPLADINQSYEGLFYFLGSI 538 (923)
Q Consensus 466 Vi~clae~Gqfdkiv~Y~~~vg-ytpD----y~~LL~~i~~--~nP~~a~efA~~L~~~~~pl~di~~~~egLyy~Lgsi 538 (923)
...++...|++++++.+.++.- ..|+ |..+-..... -++++|.+......+.+
T Consensus 48 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-------------------- 107 (225)
T 2vq2_A 48 RAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADP-------------------- 107 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTST--------------------
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCc--------------------
Confidence 6678888999999988877642 2232 1111111111 23444444443333310
Q ss_pred ccccCCcchhhHHHHHHHhcCChhhhHHhhhcC
Q psy1644 539 VNYSQDQEVHFKYIQAACKTGQIKEVERICRES 571 (923)
Q Consensus 539 vn~s~d~dVhfKYIeAA~k~gq~~EvERicres 571 (923)
....++++++....+..+.|++++.+...++.
T Consensus 108 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 139 (225)
T 2vq2_A 108 -TYPTPYIANLNKGICSAKQGQFGLAEAYLKRS 139 (225)
T ss_dssp -TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11223456666677778888888877766554
Done!