RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1644
(923 letters)
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET:
VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A
3gd1_I 1c9i_A 1c9l_A
Length = 365
Score = 283 bits (726), Expect = 8e-88
Identities = 147/191 (76%), Positives = 160/191 (83%), Gaps = 10/191 (5%)
Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
L N+GIN ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 16 LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 75
Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
PASKVIALK KTLQIFNIEMKSKMKAH MTDDV FWKWIS NT+ALVT+
Sbjct: 76 PASKVIALKA----------GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD 125
Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
+VYHWSMEG+S P KMFDRHS+L GCQIINYRTD KQ WLLL GISA NRVVGAMQLY
Sbjct: 126 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 185
Query: 390 SVERKCSQPIE 400
SV+RK SQPIE
Sbjct: 186 SVDRKVSQPIE 196
Score = 203 bits (518), Expect = 2e-58
Identities = 103/139 (74%), Positives = 112/139 (80%), Gaps = 1/139 (0%)
Query: 1 HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA 60
HAASFA FK EGN E STLFCFAVR AGGKLHIIEVGTPP GN P KKAVDVFFPPEA
Sbjct: 198 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 257
Query: 61 ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGII 120
NDFPVAMQ+S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GII
Sbjct: 258 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 317
Query: 121 GLTNVGINVGSVSFNTLTM 139
G+ G V SV +
Sbjct: 318 GVNRKG-QVLSVCVEEENI 335
Score = 167 bits (425), Expect = 1e-45
Identities = 79/100 (79%), Positives = 91/100 (91%)
Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
++S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GIIGVNRKGQV
Sbjct: 266 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 325
Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLF 828
LSV V+E+NIIPYI LQNPDLALR+AVRNN AGAE+LF
Sbjct: 326 LSVCVEEENIIPYITNVLQNPDLALRMAVRNNNAGAEELF 365
Score = 114 bits (287), Expect = 1e-27
Identities = 56/70 (80%), Positives = 63/70 (90%)
Query: 122 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 181
L N+GIN ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 16 LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 75
Query: 182 PASKVIALKG 191
PASKVIALK
Sbjct: 76 PASKVIALKA 85
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller
coated-PITS, membrane PR; 2.60A {Rattus norvegicus}
SCOP: a.118.1.4 b.69.6.1
Length = 494
Score = 285 bits (731), Expect = 7e-87
Identities = 147/191 (76%), Positives = 160/191 (83%), Gaps = 10/191 (5%)
Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
L N+GIN ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 15 LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 74
Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
PASKVIALK KTLQIFNIEMKSKMKAH MTDDV FWKWIS NT+ALVT+
Sbjct: 75 PASKVIALKA----------GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD 124
Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
+VYHWSMEG+S P KMFDRHS+L GCQIINYRTD KQ WLLL GISA NRVVGAMQLY
Sbjct: 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184
Query: 390 SVERKCSQPIE 400
SV+RK SQPIE
Sbjct: 185 SVDRKVSQPIE 195
Score = 202 bits (516), Expect = 1e-56
Identities = 100/127 (78%), Positives = 108/127 (85%)
Query: 1 HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA 60
HAASFA FK EGN E STLFCFAVR AGGKLHIIEVGTPP GN P KKAVDVFFPPEA
Sbjct: 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 256
Query: 61 ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGII 120
NDFPVAMQ+S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GII
Sbjct: 257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 316
Query: 121 GLTNVGI 127
G+ G
Sbjct: 317 GVNRKGQ 323
Score = 179 bits (454), Expect = 2e-48
Identities = 94/125 (75%), Positives = 107/125 (85%)
Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
++S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GIIGVNRKGQV
Sbjct: 265 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324
Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAA 848
LSV V+E+NIIPYI LQNPDLALR+AVRNNLAGAE+LF RKFN LF G YSEAAK A
Sbjct: 325 LSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVA 384
Query: 849 CKTGQ 853
+
Sbjct: 385 ANAPK 389
Score = 115 bits (290), Expect = 3e-27
Identities = 56/70 (80%), Positives = 63/70 (90%)
Query: 122 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 181
L N+GIN ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 15 LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 74
Query: 182 PASKVIALKG 191
PASKVIALK
Sbjct: 75 PASKVIALKA 84
Score = 108 bits (271), Expect = 7e-25
Identities = 62/118 (52%), Positives = 77/118 (65%), Gaps = 3/118 (2%)
Query: 350 HSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSV--ERKCSQPIEEKKSRVA 407
+ II Y T+ Q L + + AV N + GA +L++ +Q + ++VA
Sbjct: 326 SVCVEEENIIPYITNVLQNPDLALRM-AVRNNLAGAEELFARKFNALFAQGNYSEAAKVA 384
Query: 408 ANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCRPVLAQ 465
ANAPKGILRTP TI +FQ VP GQTSPLLQYFGILLD G+LNK+ESLELCRPVL Q
Sbjct: 385 ANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPVLQQ 442
Score = 82.3 bits (203), Expect = 2e-16
Identities = 38/45 (84%), Positives = 42/45 (93%)
Query: 624 VQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANI 668
+Q+GRK LLEKWLKE+KLECSEELGDLVK DPTLALSVYLRAN+
Sbjct: 440 LQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANV 484
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 280 bits (718), Expect = 5e-79
Identities = 147/191 (76%), Positives = 160/191 (83%), Gaps = 10/191 (5%)
Query: 210 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 269
L N+GIN ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 15 LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 74
Query: 270 PASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTE 329
PASKVIALK KTLQIFNIEMKSKMKAH MTDDV FWKWIS NT+ALVT+
Sbjct: 75 PASKVIALKA----------GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD 124
Query: 330 TSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLY 389
+VYHWSMEG+S P KMFDRHS+L GCQIINYRTD KQ WLLL GISA NRVVGAMQLY
Sbjct: 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184
Query: 390 SVERKCSQPIE 400
SV+RK SQPIE
Sbjct: 185 SVDRKVSQPIE 195
Score = 204 bits (521), Expect = 3e-54
Identities = 164/484 (33%), Positives = 222/484 (45%), Gaps = 103/484 (21%)
Query: 350 HSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVGAMQLYSV--ERKCSQPIEEKKSRVA 407
+ II Y T+ Q L + + AV N + GA +L++ +Q + ++VA
Sbjct: 326 SVCVEEENIIPYITNVLQNPDLALRM-AVRNNLAGAEELFARKFNALFAQGNYSEAAKVA 384
Query: 408 ANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCRPVLAQ-- 465
ANAPKGILRTP TI +FQ VP GQTSPLLQYFGILLD G+LNK+ESLELCRPVL Q
Sbjct: 385 ANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPVLQQGR 444
Query: 466 -------------------------------------------VIQSFAETGQFQKIVLY 482
VIQ FAETGQ QKIVLY
Sbjct: 445 KQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQCFAETGQVQKIVLY 504
Query: 483 AKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQDDEPLADINQSYEGLFY--------- 533
AKKVGY+PD++FLLRNVMR++PDQG FAQMLVQD+EPLADI Q +
Sbjct: 505 AKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDEEPLADITQIVDVFMEYNLIQQCTA 564
Query: 534 FLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNC---YNAERVKNFLKEAKL-- 588
FL + ++ E + +V + Y+ + ++A L
Sbjct: 565 FLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQ 624
Query: 589 ------------------TDQLPL---------IIVCDRFDFVHDLVLYLYRNNLQKYIE 621
T L + V D + + ++ R NLQ ++
Sbjct: 625 RALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQ 684
Query: 622 IYVQKGRKHLLEKWLKE-EKLECSEE----LGDLVKQSDPTLALSVYLRANIK--QSRFV 674
+ + + + ++ E + E LG +V S Y++A K Q + V
Sbjct: 685 VASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEV 744
Query: 675 HDLVLYLYRNNLQKYIEIYVQK-------IRIKIKQSRFVHDLVLYLYRNNLQKYIEIYV 727
+ + ++ + + I + FVHDLVLYLYRNNLQKYIEIYV
Sbjct: 745 ERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYV 804
Query: 728 QKVS 731
QKV+
Sbjct: 805 QKVN 808
Score = 200 bits (510), Expect = 7e-53
Identities = 100/127 (78%), Positives = 108/127 (85%)
Query: 1 HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA 60
HAASFA FK EGN E STLFCFAVR AGGKLHIIEVGTPP GN P KKAVDVFFPPEA
Sbjct: 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 256
Query: 61 ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGII 120
NDFPVAMQ+S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GII
Sbjct: 257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 316
Query: 121 GLTNVGI 127
G+ G
Sbjct: 317 GVNRKGQ 323
Score = 190 bits (483), Expect = 1e-49
Identities = 124/260 (47%), Positives = 162/260 (62%), Gaps = 39/260 (15%)
Query: 496 LRNVMRVNPDQGVGFAQMLVQ---------DDEPLADI---NQSYEGLFYFLGSIVNYSQ 543
LR ++ N Q + Q+ VQ + L ++ +S+EGLFYFLGSIVN+SQ
Sbjct: 667 LRAMLSANIRQNL---QICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQ 723
Query: 544 DQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVCDRFDF 603
D +VHFKYIQAACKTGQIKEVERICRESNCY+ ERVKNFLKEAKLTDQLPLIIVCDRFDF
Sbjct: 724 DPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDF 783
Query: 604 VHDLVLYLYRNNLQKYIEIYVQK---GRKHLLEKWLKEEKLECSEELGDLVKQSDPTLAL 660
VHDLVLYLYRNNLQKYIEIYVQK R ++ L + ++CSE D++K L L
Sbjct: 784 VHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLD--VDCSE---DVIKN----LIL 834
Query: 661 SVYLRANIKQSRFVHDLVLYLYRNNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLY---RN 717
V + + + LV + + N K + +++ + + H+ + +Y N
Sbjct: 835 VVRGQFSTDE------LVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNN 888
Query: 718 NLQKYIE---IYVQKVSAKY 734
N ++++ Y +V KY
Sbjct: 889 NPERFLRENPYYDSRVVGKY 908
Score = 174 bits (441), Expect = 2e-44
Identities = 94/121 (77%), Positives = 106/121 (87%)
Query: 729 KVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQV 788
++S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GIIGVNRKGQV
Sbjct: 265 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324
Query: 789 LSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAA 848
LSV V+E+NIIPYI LQNPDLALR+AVRNNLAGAE+LF RKFN LF G YSEAAK A
Sbjct: 325 LSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVA 384
Query: 849 C 849
Sbjct: 385 A 385
Score = 122 bits (308), Expect = 2e-28
Identities = 66/74 (89%), Positives = 68/74 (91%), Gaps = 5/74 (6%)
Query: 846 KAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIV-----FVHDLVLYLY 900
+AACKTGQIKEVERICRESNCY+ ERVKNFLKEAKLTDQLPLIIV FVHDLVLYLY
Sbjct: 733 QAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLY 792
Query: 901 RNNLQKYIEIYVQK 914
RNNLQKYIEIYVQK
Sbjct: 793 RNNLQKYIEIYVQK 806
Score = 114 bits (287), Expect = 6e-26
Identities = 56/70 (80%), Positives = 63/70 (90%)
Query: 122 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 181
L N+GIN ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 15 LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 74
Query: 182 PASKVIALKG 191
PASKVIALK
Sbjct: 75 PASKVIALKA 84
Score = 47.7 bits (113), Expect = 2e-05
Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 10/130 (7%)
Query: 474 GQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQDDEP--------LADIN 525
G + +A++ + L + + ++ D+P A+ +
Sbjct: 1090 GNLDRAYEFAERCNEPAVWSQLAKAQL--QKGMVKEAIDSYIKADDPSSYMEVVQAANTS 1147
Query: 526 QSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKE 585
++E L +L +++ V + I A KT ++ E+E N + ++V + +
Sbjct: 1148 GNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYD 1207
Query: 586 AKLTDQLPLI 595
K+ D L+
Sbjct: 1208 EKMYDAAKLL 1217
Score = 40.8 bits (95), Expect = 0.002
Identities = 61/398 (15%), Positives = 120/398 (30%), Gaps = 60/398 (15%)
Query: 542 SQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVCDRF 601
++ H A ER RE+ Y++ V + ++ D + +R
Sbjct: 870 CEEPATHNA--LAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKR---DPHLACVAYERG 924
Query: 602 DFVHDLVLYLYRNNLQKYIEIY-VQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLAL 660
+L+ N+L K + Y V++ L L E + L+ Q T
Sbjct: 925 QCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLES----NPYRRPLIDQVVQTALS 980
Query: 661 SVYLRANIKQSRFVHDLVLYLYRNNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLYRNNLQ 720
+ S V + N L + +E V + + + L+L + +
Sbjct: 981 ETQDPEEV--SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRT 1038
Query: 721 KYIEIYVQKVSAKYDV----------------VYLITKFGYIHVYDIETATCIYMNRISS 764
+ +E Y+ + YD + KF +A + + I +
Sbjct: 1039 RVME-YINR-LDNYDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIEHIGN 1091
Query: 765 DTIFVTAPHEATGGIIGVNRKG---QVLSVSVDEDNIIPYINGTLQNPD---LALRIAVR 818
A N Q+ + + + I+ ++ D +
Sbjct: 1092 -------LDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAA 1144
Query: 819 NNLAGAEDLF---VRKFNLLFTNGQYSEAAKAACKTGQIKEVERICRESNCYNAERVKNF 875
N E+L + +E A KT ++ E+E N + ++V +
Sbjct: 1145 NTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDR 1204
Query: 876 LKEAKLTDQLPLIIVFVHDLVLYLYRNNLQKYIEIYVQ 913
+ K+ D L LY +N + V
Sbjct: 1205 CYDEKMYDAAKL---------LYNNVSNFGRLASTLVH 1233
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 71.2 bits (174), Expect = 1e-12
Identities = 55/279 (19%), Positives = 95/279 (34%), Gaps = 72/279 (25%)
Query: 348 DRHSTLN-GCQIIN-YRTDPKQTWLLLIGISAVSNRV-VGAMQL------YSVERKCSQP 398
D H G I++ +P + G R AM K +
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE 1709
Query: 399 IEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLL--QY--FGILLDHGKLNK-- 452
I E + + KG+L T +F Q PA L + F L G +
Sbjct: 1710 INEHSTSYTFRSEKGLLS--AT--QFTQ---PA-----LTLMEKAAFEDLKSKGLIPADA 1757
Query: 453 ----HESL-E---LCRPVLAQVIQSFAET-------GQFQKIVLYAKKVGYSPDYVFLLR 497
H SL E L LA V+ S G ++ + ++G S +Y
Sbjct: 1758 TFAGH-SLGEYAALA--SLADVM-SIESLVEVVFYRGMTMQVAVPRDELGRS-NYG---- 1808
Query: 498 NVMRVNPDQ-GVGFAQMLVQDDEPLADINQSYEGLFYFLGSIVNY-SQDQEVHFKYIQAA 555
++ +NP + F+Q +Q + + G + + IVNY ++Q Q
Sbjct: 1809 -MIAINPGRVAASFSQEALQY---VVERVGKRTG--WLV-EIVNYNVENQ-------QYV 1854
Query: 556 CKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPL 594
G ++ ++ + N N +++ + +L L L
Sbjct: 1855 A-AGDLRALDTVT---NVLNFIKLQK-IDIIELQKSLSL 1888
Score = 53.1 bits (127), Expect = 4e-07
Identities = 108/579 (18%), Positives = 179/579 (30%), Gaps = 230/579 (39%)
Query: 443 ILLDHGKLNKHESLELCRPV------LAQVIQSFAETGQFQKIVLYAKKVGYSPDYVFLL 496
+ L HG SLE V +A +Q QF KI+
Sbjct: 9 LTLSHG------SLEHVLLVPTASFFIASQLQE-----QFNKIL---------------- 41
Query: 497 RNVMRVNPDQGVGFAQMLVQDDEPLADINQSYEGLFYFLGSIVNYSQDQEV-HFKYIQAA 555
P+ GFA DDEP E + FLG + + + +V F +
Sbjct: 42 -------PEPTEGFAA----DDEPTTPA----ELVGKFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 556 CKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNN 615
C + E E +L+ D +H L L + N
Sbjct: 87 C----LTEFEN--------------CYLEG---ND-------------IHALAAKLLQEN 112
Query: 616 ------LQKYIEIY----------------------VQKGRKHLL---------EKWLKE 638
++ I+ Y V +G L+ + + +E
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 639 -EKL-ECSEEL-GDLVKQSDPTLA-LSVYLRANIKQSR-FVH--DLVLYLYRNNLQKYIE 691
L + L GDL+K S TL+ L R + + F +++ +L N +
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELI---RTTLDAEKVFTQGLNILEWL-ENPSNTPDK 228
Query: 692 IYVQKIR-----IKIKQSRFVHDLVLYLYRNNLQKYIEIYVQKVSAK---YDVVYLITKF 743
Y+ I I + Q H Y+ V+AK + L +
Sbjct: 229 DYLLSIPISCPLIGVIQ--LAH-------------YV------VTAKLLGFTPGELRSYL 267
Query: 744 -GYI-HVYDIETATCIYMNRISSDTI--FVTAPHEATGGI--IGV--------------- 782
G H + TA I +D+ F + +A + IGV
Sbjct: 268 KGATGHSQGLVTAVAIAE----TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 783 ------NRKGQ---VLSVS-VDEDNIIPYI---NGTLQNPDLALRIAVRN-----NLAG- 823
N +G +LS+S + ++ + Y+ N L + I++ N ++G
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP-AGKQVEISLVNGAKNLVVSGP 382
Query: 824 AEDLFVRKFNLLFTNGQYSEAAKAACKTGQ--IKEVERICRESNCYNAERVK-----NFL 876
+ L NL AKA Q I ER + SN + V + L
Sbjct: 383 PQSL--YGLNLTL------RKAKAPSGLDQSRIPFSERKLKFSNRFL--PVASPFHSHLL 432
Query: 877 KEAK---LTDQLPLIIVF-VHDLVLYLYR----NNLQKY 907
A D + + F D+ + +Y ++L+
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Score = 48.9 bits (116), Expect = 9e-06
Identities = 44/310 (14%), Positives = 97/310 (31%), Gaps = 110/310 (35%)
Query: 59 EAANDFPVAMQVSAKYDVVYLITKFGY--------------IHVYDIETATCIYMN---- 100
+ A V + D + +G+ IH + E I N
Sbjct: 1634 DLYKTSKAAQDVWNRADN-HFKDTYGFSILDIVINNPVNLTIH-FGGEKGKRIRENYSAM 1691
Query: 101 --------RISSDTIFVTAPHEATG-------GIIGLTNVGINVGSVSFNT----LTMES 141
++ ++ IF +T G++ T T ME
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ----------FTQPALTLMEK 1741
Query: 142 DKFICVREK--------IA-----E-SAQVVIIDMNDPTNPIRRPISADSAIMNPASKVI 187
F ++ K A E +A + D+ +S +S + +V+
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLADV----------MSIESLV-----EVV 1786
Query: 188 ALKGKAGNDNNPNGEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESA---- 243
+G P E Y + + IN G V+ + + E+ +++ E++ +
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGM--IAINPGRVA-ASFSQEALQYVV--ERVGKRTGWLV 1841
Query: 244 QVVIIDMNDPTNPIRRP-----ISADSAIMNPASKVI-ALKGKAGNDNNPNAPKTLQIFN 297
++V N N + D ++ + V+ +K + + + + +
Sbjct: 1842 EIV----NY--NV---ENQQYVAAGDLRALDTVTNVLNFIKLQ-----KIDIIELQKSLS 1887
Query: 298 IEMKSKMKAH 307
+E +++ H
Sbjct: 1888 LE---EVEGH 1894
Score = 47.4 bits (112), Expect = 3e-05
Identities = 55/387 (14%), Positives = 117/387 (30%), Gaps = 146/387 (37%)
Query: 201 GEFKNRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAES---AQVVIIDMNDPTNPI 257
EF YL N ++ +++ L E+D + +++ ++ A+++
Sbjct: 89 TEF-ENCYLEGN---DIHALAA-KLLQENDTTLVKTKELIKNYITARIMA---------- 133
Query: 258 RRPIS--ADSAIMNPAS----KVIALKGKAGNDNNP--------------------NAPK 291
+RP ++SA+ +++A+ G GN ++ + +
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 292 TLQIFNIEMKSKMKAHPMTDDVVFWKWIS-----PNT--LA-------LVTETSVYHWSM 337
TL K +++ +W+ P+ L L+ + H+ +
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNIL--EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251
Query: 338 ---EGDSTPEKMFDRHSTLNGC--QII------------NYRTDPKQ--TWLLLIGISAV 378
TP ++ G ++ ++ ++ T L IG+
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV--- 308
Query: 379 SNRVVGAMQLYSVERKCSQPIEEKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLL 438
+C + P L P +I++ + G SP+L
Sbjct: 309 ---------------RCYE-----------AYPNTSL--PPSILE-DSLENNEGVPSPML 339
Query: 439 QYFGILLDH-----GKLNKH------------------------ESLELCRPVLAQVIQS 469
+ + K N H +SL L +
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA--- 396
Query: 470 FAETGQFQ-KIVLYAKKVGYSPDYVFL 495
A +G Q +I +K+ +S FL
Sbjct: 397 KAPSGLDQSRIPFSERKLKFS--NRFL 421
Score = 47.0 bits (111), Expect = 4e-05
Identities = 95/524 (18%), Positives = 146/524 (27%), Gaps = 200/524 (38%)
Query: 428 PTPAGQTSPLL----QYF--GILLD---H---GKLNKHESLELCRPVLAQVIQSFAETGQ 475
P+ GQ +L F L H KL + L + ++I+++
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK--TKELIKNYITARI 131
Query: 476 FQKIVLYAKKVGYSPDYVFLLRNVMRVNPD-------QGVG---FAQMLVQDDEPLADIN 525
K K S L R V N QG F +E L D+
Sbjct: 132 MAKRPF--DKKSNSA----LFRAVGEGNAQLVAIFGGQGNTDDYF-------EE-LRDLY 177
Query: 526 QSYEG----LFYF----LGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAE 577
Q+Y L F L ++ + D E F + I E N
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT------QGLNILEWLE--------NPS 223
Query: 578 RV--KNFLKEAKLTDQLPLI---------IVCDRFDF---------------VHDLVLYL 611
K++L ++ PLI + F LV +
Sbjct: 224 NTPDKDYLLSIPIS--CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 612 ----------YRNNLQKYIEIYVQKG-RKHLL--EKWLKEEKLECSEELGDLVKQSDPTL 658
+ +++K I + G R + L LE S E + P+
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN----EGVPSP 337
Query: 659 ALSV-------------YLRANIKQSRFVH--------DLV-------LYLYRNNLQKYI 690
LS+ +++ + V +LV LY L+K
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK-- 395
Query: 691 EIYVQKIRIKIKQSR---------FVHDLVLYL---------YRNNLQKYIEIYVQKVSA 732
K + QSR F + +L I + K +
Sbjct: 396 ----AKAPSGLDQSRIPFSERKLKFSN---RFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 733 KYDVVYLITKFGYIHVYDIETAT--CIYMNRISS---DTIFV-------TAPHEAT---- 776
++ + I VYD + + IS D I T +AT
Sbjct: 449 SFNAKDI-----QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 777 ---GGIIGV------NRKGQVLSVSVDEDNIIPYINGTLQ-NPD 810
GG G+ N+ G V V I+ GTL NPD
Sbjct: 504 FGPGGASGLGVLTHRNKDGT--GVRV----IVA---GTLDINPD 538
Score = 39.6 bits (92), Expect = 0.005
Identities = 50/352 (14%), Positives = 103/352 (29%), Gaps = 118/352 (33%)
Query: 2 AASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEV--GTPPAGNTPLAKKAVDVFFP-- 57
A + + S LF R G ++ + G GNT D +F
Sbjct: 128 TARIMAKRPFDKKSNSALF----RAVGEGNAQLVAIFGGQ---GNT-------DDYFEEL 173
Query: 58 -------PEAANDFPVAMQVSAKYDVVYLI-----TKFGYIHVYDI----ETATCIYMNR 101
D ++ SA+ + LI + + +I E +
Sbjct: 174 RDLYQTYHVLVGDL---IKFSAET-LSELIRTTLDAEKVFTQGLNILEWLENP-----SN 224
Query: 102 ISSDTIFVTAPHEATGGIIGLT----------NVGINVGSV--SFNTLTMESDKFICVRE 149
++ P + +IG+ +G G + T S +
Sbjct: 225 TPDKDYLLSIP--ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV---- 278
Query: 150 KIAESAQVVIIDMNDPTNPIRRPISADSAIMNPASKVIALKGKAGNDNNPNGEFKNRIYL 209
+A V I D S +S ++ K I +
Sbjct: 279 ----TA--VAIAETD---------SWESFFVS-VRKAIT--------------------V 302
Query: 210 LTNVGINVGSVSFNTLTMES---DKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSA 266
L +G+ ++ ++ + + E + S + I ++ ++ ++ ++
Sbjct: 303 LFFIGVR-CYEAYPNTSLPPSILEDSLENNEGVP-SPMLSISNLTQEQ--VQDYVNKTNS 358
Query: 267 IMNPASKV-IALKGKAGNDNNPNA------PKTLQIFNIEMKSKMKAHPMTD 311
+ +V I+L N P++L N+ ++ K KA D
Sbjct: 359 HLPAGKQVEISLV------NGAKNLVVSGPPQSLYGLNLTLR-KAKAPSGLD 403
Score = 36.6 bits (84), Expect = 0.055
Identities = 40/209 (19%), Positives = 63/209 (30%), Gaps = 86/209 (41%)
Query: 11 EGNPEP---------STLFCFAVRT----PAGGKLHI---------IEVGTP-------- 40
EG P P + + +T PAG ++ I + G P
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 41 -------PAG----NTPLAKKAVDV---FFP---P------EAANDFPVAMQVSAKYDVV 77
P+G P +++ + F P P A+D + + K +V
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD--LINKDLVKNNVS 449
Query: 78 YLITKFGYIHVYDIETAT--CIYMNRISS---DTIFV-------TAPHEAT-------GG 118
+ I VYD + + IS D I T +AT GG
Sbjct: 450 FNAKDIQ-IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG 508
Query: 119 IIGLTNV--------GINV---GSVSFNT 136
GL + G+ V G++ N
Sbjct: 509 ASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.3 bits (171), Expect = 2e-12
Identities = 97/663 (14%), Positives = 199/663 (30%), Gaps = 193/663 (29%)
Query: 284 DNNPNAPKTLQIFNIE--MKSKMKAHPMTDDVVFWKWISPNTLALVTETSVYHWSMEGDS 341
+++ KS + + D ++ +S + V+ T W++ S
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEEI-DHII----MSKDA---VSGTLRLFWTLL--S 73
Query: 342 TPEKMFDRHSTLNGCQIINY-------RTDPKQTWLLLIGISAVSNRVVGAMQL---YSV 391
E+M + + INY +T+ +Q ++ +R+ Q+ Y+V
Sbjct: 74 KQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 392 ERKCSQPIEEK----------------------KSRVAANAPKGILRTPQTIVKFQQVPT 429
R QP + K+ VA + + + K
Sbjct: 132 SRL--QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV----CLSYKVQCKM----- 180
Query: 430 PAGQTSPLLQYFGIL-LDHGKLNKHESL-----ELCR----PVLAQVIQSFAETGQFQKI 479
F I L+ N E++ +L ++ S + I
Sbjct: 181 ----------DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 480 VLYAKKVGYSPDYV---FLLRNVMRVNPDQGVGF-AQMLV-QDDEPLADINQSYEGLFYF 534
+++ S Y +L NV ++L+ + + D +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 535 LGSIV-NYSQDQ--EVHFKYI--------QAACKT-----GQIKEV--ERICRESN--CY 574
L + D+ + KY+ + T I E + + N
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 575 NAERVKNFLKEAKLTDQLPLIIVCDRFD----FVHDL-----VLYLYRNNLQKY-IEIYV 624
N +++ + E+ L + L FD F +L L ++ K + + V
Sbjct: 351 NCDKLTTII-ESSL-NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 625 QK-GRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLYLYR 683
K + L+EK KE + S P++ L L+ ++ +H
Sbjct: 409 NKLHKYSLVEKQPKESTI------------SIPSIYLE--LKVKLENEYALH-------- 446
Query: 684 NNLQKYIEIYVQKIRIKIKQSRFVHDLVLYLYRNNLQKYIEIYVQKVSAKYDVVYLITKF 743
+ ++ Y I ++ DL+ L +Y +
Sbjct: 447 ---RSIVDHY------NIPKTFDSDDLIP----PYLDQYFYSH----------------I 477
Query: 744 GYIHVYDIETA------TCIYMN-RISSDTIFVTAPHEATGGIIGVNRKGQVLSVSVDED 796
G+ H+ +IE ++++ R F+ N G +L+
Sbjct: 478 GH-HLKNIEHPERMTLFRMVFLDFR------FLEQKIRHDS--TAWNASGSILNTLQQLK 528
Query: 797 NIIPYINGTLQNPDLALRI-AVRNNLAGAEDLFVR-------KFNLLFTNGQ-YSEAAKA 847
PYI +P + A+ + L E+ + + L+ + + EA K
Sbjct: 529 FYKPYI--CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Query: 848 ACK 850
+
Sbjct: 587 VQR 589
Score = 47.9 bits (113), Expect = 1e-05
Identities = 54/429 (12%), Positives = 126/429 (29%), Gaps = 107/429 (24%)
Query: 546 EVHFKY-------IQAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLIIVC 598
E ++Y A K+V+ + + + + E + + + +
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPK--SILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 599 DRFDFVHDLVLYLYRNNL-QKYIEIYVQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPT 657
L + + QK++E ++ K L+ K E+ + S ++Q D
Sbjct: 71 ----------LLSKQEEMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRL 119
Query: 658 L-ALSVYLRANIKQSRFVHDLVLYLYRNNLQKYIEIY--------------VQKIRIKIK 702
V+ + N+ + + L L K + I +++ K
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 703 QSRFVH----------DLVLY----LYRNNLQKYIE-------IYVQKVSAKYDVVYLIT 741
+ + VL L + I ++ S + ++ L+
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 742 KFGYIHVY----DIETATCI-YMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSVSVDED 796
Y + +++ A N +S + T + T + +S+D
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTT----HISLDH- 293
Query: 797 NIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAACKTG--QI 854
+ TL + + L L + + + + + T ++
Sbjct: 294 -----HSMTLTPDE-------------VKSLL-----LKYLDCRPQDLPREVLTTNPRRL 330
Query: 855 KEVERICRESNCYNAERVKNFLKEAKLTDQLPLII-VFVHDLVLYLYRNNLQKYIEIYVQ 913
+ R+ N+ D+L II ++ L YR + + + V
Sbjct: 331 SIIAESIRDGLA----TWDNWKHVNC--DKLTTIIESSLNVLEPAEYR---KMFDRLSV- 380
Query: 914 KRFDRENCN 922
F + +
Sbjct: 381 --F-PPSAH 386
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.061
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Query: 633 EKW-LKEEKLECSEELGDLVKQSDPTLALSVYLRANIK 669
EK LK KL+ S +L S P LA ++A ++
Sbjct: 18 EKQALK--KLQASLKL--YADDSAPALA----IKATME 47
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane
protein folding, negative, BAMA, protein binding; 1.65A
{Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A
2yh3_A
Length = 376
Score = 30.6 bits (69), Expect = 2.3
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 735 DVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNRKGQVLSVS 792
+ + GY+H ++E + ++ S T P A G ++ + G V S++
Sbjct: 319 GNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGF-QTEPVAADGKLLIQAKDGTVYSIT 375
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 30.4 bits (69), Expect = 3.2
Identities = 16/69 (23%), Positives = 21/69 (30%), Gaps = 9/69 (13%)
Query: 813 LRIAVRNNLAG-AEDLFVRKFNLLFTNGQYSEAAKAACKTGQIKEVERICRESNCYNAER 871
L+ V + D FVR+ LF N K V R E + E
Sbjct: 475 LQYGVEQEMVATPLDFFVRRTGALFFNISLVHQWKE--------AVLRWMAEEFSWTEEE 526
Query: 872 VKNFLKEAK 880
F E +
Sbjct: 527 KTRFQNELE 535
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 29.9 bits (66), Expect = 3.8
Identities = 10/95 (10%), Positives = 20/95 (21%), Gaps = 1/95 (1%)
Query: 287 PNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTLALVTETSVYHWSMEGDST-PEK 345
+ L + + W+ T+ +Y+ E
Sbjct: 108 GTSIVNLTCTTNTTEDNYSRLRSYQVSLHCTWMVGTDAPEDTQYFLYYRYGSWTEECQEY 167
Query: 346 MFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSN 380
D C K L + ++ S
Sbjct: 168 SMDTLGRNIACWFPRTFILSKGRDWLAVLVNGSSK 202
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose
utilisation, structural genomi center for structural
genomics, JCSG; 1.75A {Parabacteroides merdae}
Length = 281
Score = 29.9 bits (66), Expect = 4.0
Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 2/62 (3%)
Query: 28 AGGKLHIIEVGTP--PAGNTPLAKKAVDVFFPPEAANDFPVAMQVSAKYDVVYLITKFGY 85
G H +V + VD PE D + + Y +V L
Sbjct: 11 TGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDYNGDS 70
Query: 86 IH 87
Sbjct: 71 WP 72
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 28.8 bits (64), Expect = 9.0
Identities = 15/70 (21%), Positives = 33/70 (47%)
Query: 522 ADINQSYEGLFYFLGSIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKN 581
A+ + ++E L +L +++ V + I A KT ++ E+E N + ++V +
Sbjct: 93 ANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGD 152
Query: 582 FLKEAKLTDQ 591
+ K+ D
Sbjct: 153 RCYDEKMYDA 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.398
Gapped
Lambda K H
0.267 0.0444 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,113,373
Number of extensions: 884418
Number of successful extensions: 2047
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2027
Number of HSP's successfully gapped: 43
Length of query: 923
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 821
Effective length of database: 3,853,851
Effective search space: 3164011671
Effective search space used: 3164011671
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.4 bits)