RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1644
(923 letters)
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 327
Score = 317 bits (813), Expect = e-101
Identities = 148/196 (75%), Positives = 161/196 (82%), Gaps = 10/196 (5%)
Query: 205 NRIYLLTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISAD 264
L N+GIN ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISAD
Sbjct: 7 QEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISAD 66
Query: 265 SAIMNPASKVIALKGKAGNDNNPNAPKTLQIFNIEMKSKMKAHPMTDDVVFWKWISPNTL 324
SAIMNPASKVIALK A KTLQIFNIEMKSKMKAH MTDDV FWKWIS NT+
Sbjct: 67 SAIMNPASKVIALK----------AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV 116
Query: 325 ALVTETSVYHWSMEGDSTPEKMFDRHSTLNGCQIINYRTDPKQTWLLLIGISAVSNRVVG 384
ALVT+ +VYHWSMEG+S P KMFDRHS+L GCQIINYRTD KQ WLLL GISA NRVVG
Sbjct: 117 ALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 176
Query: 385 AMQLYSVERKCSQPIE 400
AMQLYSV+RK SQPIE
Sbjct: 177 AMQLYSVDRKVSQPIE 192
Score = 222 bits (568), Expect = 4e-66
Identities = 103/135 (76%), Positives = 111/135 (82%), Gaps = 1/135 (0%)
Query: 1 HAASFASFKSEGNPEPSTLFCFAVRTPAGGKLHIIEVGTPPAGNTPLAKKAVDVFFPPEA 60
HAASFA FK EGN E STLFCFAVR AGGKLHIIEVGTPP GN P KKAVDVFFPPEA
Sbjct: 194 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 253
Query: 61 ANDFPVAMQVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGII 120
NDFPVAMQ+S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GII
Sbjct: 254 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 313
Query: 121 GLTNVGINVGSVSFN 135
G+ G V SV
Sbjct: 314 GVNRKG-QVLSVCVE 327
Score = 124 bits (313), Expect = 9e-32
Identities = 53/70 (75%), Positives = 63/70 (90%), Gaps = 1/70 (1%)
Query: 725 IYVQKVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFVTAPHEATGGIIGVNR 784
+ +Q +S K+DVV+LITK+GYIH+YD+ET TCIYMNRIS +TIFVTAPHEAT GIIGVNR
Sbjct: 259 VAMQ-ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNR 317
Query: 785 KGQVLSVSVD 794
KGQVLSV V+
Sbjct: 318 KGQVLSVCVE 327
Score = 121 bits (306), Expect = 8e-31
Identities = 56/70 (80%), Positives = 63/70 (90%)
Query: 122 LTNVGINVGSVSFNTLTMESDKFICVREKIAESAQVVIIDMNDPTNPIRRPISADSAIMN 181
L N+GIN ++ F+TLTMESDKFIC+REK+ E AQVVIIDMNDP+NPIRRPISADSAIMN
Sbjct: 12 LQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMN 71
Query: 182 PASKVIALKG 191
PASKVIALK
Sbjct: 72 PASKVIALKA 81
>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 157
Score = 112 bits (282), Expect = 2e-29
Identities = 49/65 (75%), Positives = 55/65 (84%)
Query: 401 EKKSRVAANAPKGILRTPQTIVKFQQVPTPAGQTSPLLQYFGILLDHGKLNKHESLELCR 460
+ ++VAANAPKGILRTP TI +FQ VP GQTSPLLQYFGILLD G+LNK+ESLELCR
Sbjct: 48 SEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCR 107
Query: 461 PVLAQ 465
PVL Q
Sbjct: 108 PVLQQ 112
Score = 90.9 bits (226), Expect = 6e-22
Identities = 42/54 (77%), Positives = 45/54 (83%)
Query: 795 EDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFVRKFNLLFTNGQYSEAAKAA 848
E+NIIPYI LQNPDLALR+AVRNNLAGAE+LF RKFN LF G YSEAAK A
Sbjct: 1 EENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVA 54
Score = 82.8 bits (205), Expect = 4e-19
Identities = 38/44 (86%), Positives = 41/44 (93%)
Query: 624 VQKGRKHLLEKWLKEEKLECSEELGDLVKQSDPTLALSVYLRAN 667
+Q+GRK LLEKWLKE+KLECSEELGDLVK DPTLALSVYLRAN
Sbjct: 110 LQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRAN 153
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment
{Cow (Bos taurus) [TaxId: 9913]}
Length = 336
Score = 86.1 bits (213), Expect = 1e-18
Identities = 23/197 (11%), Positives = 67/197 (34%), Gaps = 16/197 (8%)
Query: 464 AQVIQSFAETGQFQKIVLYAKKVGYSPDYVFLLRNVMRVNPDQGVGFAQMLVQDD-EPLA 522
++ + G++Q V A+K + + + + + + + + L
Sbjct: 44 GRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELE 103
Query: 523 DI------NQSYEGLFYFLGSIVN-YSQDQEVHFKYIQAACKTGQIKEVERICRESNCYN 575
++ +E L L + + + + K K E + + N
Sbjct: 104 ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 163
Query: 576 AERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRN-----NLQKYIEIYVQKGRKH 630
+V ++A L + L+ + D+++ + ++ + + ++ +I +
Sbjct: 164 IPKVLRAAEQAHLWAE--LVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVE 221
Query: 631 LLEKWLKEEKLECSEEL 647
L + ++ LE L
Sbjct: 222 LYYRAIQ-FYLEFKPLL 237
Score = 52.2 bits (125), Expect = 1e-07
Identities = 27/213 (12%), Positives = 53/213 (24%), Gaps = 37/213 (17%)
Query: 710 LVLYLYRNNLQKYIEIYVQKVSAKYDVVYLITKFGYIHVYDIETATCIYMNRISSDTIFV 769
+LY +N + V + V K + C+ +
Sbjct: 34 KLLYNNVSNFGRLASTLVHLGEYQ-AAVDGARKANSTRTWKEVCFACVDGKEFRLAQM-- 90
Query: 770 TAPHEATGGIIGVNRKGQVLSVSVDEDNIIPYINGTLQNPDLALRIAVRNNLAGAEDLFV 829
L + V D + IN I + G E +
Sbjct: 91 -----------------CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHM 133
Query: 830 RKFNLLFTNGQYSEAAKAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLII 889
G ++E A K K E + + N +V ++A L +L +
Sbjct: 134 ---------GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 184
Query: 890 --------VFVHDLVLYLYRNNLQKYIEIYVQK 914
+ + ++ +I +
Sbjct: 185 DKYEEYDNAIITMMNHPTDAWKEGQFKDIITKV 217
Score = 27.1 bits (60), Expect = 9.6
Identities = 19/209 (9%), Positives = 53/209 (25%), Gaps = 47/209 (22%)
Query: 537 SIVNYSQDQEVHFKYIQAACKTGQIKEVERICRESNCYNAERVKNFLKEAKLTDQLPLII 596
S + + + + + A T KEV C + R+ + L
Sbjct: 48 STLVHLGEYQAAVDGARKANSTRTWKEVCFACVD---GKEFRLAQMCGLHIVVHADELEE 104
Query: 597 VCDRF----DFVHDLVLYLYRNNLQ--------KYIEIYVQKGRKHLLEKWLKEEKLECS 644
+ + + F + + L+ + +Y + + + E L+
Sbjct: 105 LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH-LELFWSRV- 162
Query: 645 EELGDLVKQSDPTLALSVYLRANIKQSRFVHDLVLYLYRNNLQKYIEIYVQKIRIKIKQS 704
+ L +Q+ +LV + +
Sbjct: 163 ----------NIPKVLRA-----AEQAHLWAELVFLYDKYEEYD---------------N 192
Query: 705 RFVHDLVLYLYRNNLQKYIEIYVQKVSAK 733
+ + ++ +I + + +
Sbjct: 193 AIITMMNHPTDAWKEGQFKDIITKVANVE 221
>d1utca1 a.118.1.4 (A:331-355) Clathrin heavy-chain linker domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 26
Score = 50.4 bits (120), Expect = 4e-09
Identities = 20/25 (80%), Positives = 22/25 (88%)
Query: 795 EDNIIPYINGTLQNPDLALRIAVRN 819
E+NIIPYI LQNPDLALR+AVRN
Sbjct: 1 EENIIPYITNVLQNPDLALRMAVRN 25
>d1ny9a_ a.181.1.1 (A:) Transcriptional activator TipA-S
{Streptomyces lividans [TaxId: 1916]}
Length = 94
Score = 28.6 bits (64), Expect = 0.79
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 11/76 (14%)
Query: 471 AETGQFQKIVLYAKKVGYSPD-----------YVFLLRNVMRVNPDQGVGFAQMLVQDDE 519
E + + + G D + RN + +M V D+
Sbjct: 6 DEADELTRRFVALMDAGEPADSEGAMDAAEDHRQGIARNHYDCGYEMHTCLGEMYVSDER 65
Query: 520 PLADINQSYEGLFYFL 535
+I+ + GL ++
Sbjct: 66 FTRNIDAAKPGLAAYM 81
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
putrefaciens [TaxId: 24]}
Length = 322
Score = 28.4 bits (62), Expect = 3.9
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 771 APHEATGGIIGVNRKGQVLSVSVDED 796
A E TGG+ G NR G ++ +
Sbjct: 283 AAGEVTGGVHGANRLG---GNAISDI 305
>d1y6va1 c.76.1.1 (A:1-449) Alkaline phosphatase {Escherichia coli
[TaxId: 562]}
Length = 449
Score = 28.6 bits (63), Expect = 4.5
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 749 YDIETATCIYMNRISSDT-IFVTAPHEATGGIIGVNRKGQVLSVSVDEDN----IIPYIN 803
D + + +T + VTA H I+ + K L+ +++ + ++ Y N
Sbjct: 345 LDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGN 404
Query: 804 G 804
Sbjct: 405 S 405
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 27.4 bits (60), Expect = 8.8
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
Query: 687 QKYIEIYVQKIRIKIKQSRFVHDLVLYLYRNNLQKYIEIYVQKVSAKYDVVYLITKFGYI 746
K I + IR K K L Y + + K + I++ +D+ FG++
Sbjct: 22 IKRINKELANIRSKFKGD---KALDGYSKKKYVCKLLFIFLL----GHDI-----DFGHM 69
Query: 747 HV 748
Sbjct: 70 EA 71
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.398
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,445,738
Number of extensions: 165617
Number of successful extensions: 435
Number of sequences better than 10.0: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 18
Length of query: 923
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 829
Effective length of database: 1,116,976
Effective search space: 925973104
Effective search space used: 925973104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)