BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16442
         (116 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
          Length = 540

 Score = 26.6 bits (57), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 35  EAALQAVPDHLRQSSTHQSEEMLSNQMLSGIPEVDLGIEAKIRNIEATEEAKLKL 89
           + AL+A+P +   S+ H   E++S+     I  VDLG   +I  + A    +L L
Sbjct: 173 KKALRALPRNFNSSTEHAYHELISSYGTHFITAVDLG--GRISVLTALRTCQLTL 225


>pdb|1LI4|A Chain A, Human S-Adenosylhomocysteine Hydrolase Complexed With
           Neplanocin
          Length = 432

 Score = 26.2 bits (56), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 54  EEMLSNQMLSGIPEVDLGIEAKIRNIEATEEAKLKLLWDRHNKKDG 99
           E+M  + ++  I   D+ I+ K  N  A E+  +K   DR+  K+G
Sbjct: 288 EQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYRLKNG 333


>pdb|3NJ4|A Chain A, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
           Hydrolase
 pdb|3NJ4|B Chain B, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
           Hydrolase
 pdb|3NJ4|C Chain C, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
           Hydrolase
 pdb|3NJ4|D Chain D, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
           Hydrolase
          Length = 435

 Score = 26.2 bits (56), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 54  EEMLSNQMLSGIPEVDLGIEAKIRNIEATEEAKLKLLWDRHNKKDG 99
           E+M  + ++  I   D+ I+ K  N  A E+  +K   DR+  K+G
Sbjct: 291 EQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYRLKNG 336


>pdb|4ETS|A Chain A, Crystal Structure Of Campylobacter Jejuni Ferric Uptake
          Regulator
 pdb|4ETS|B Chain B, Crystal Structure Of Campylobacter Jejuni Ferric Uptake
          Regulator
          Length = 162

 Score = 25.4 bits (54), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 45 LRQSSTHQSEEMLSNQMLSGIPEVDLGIEAKIRNIEATEEAKL 87
          L  S TH + E L  ++    P++++GI    R +   EEA++
Sbjct: 42 LYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.126    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,655,625
Number of Sequences: 62578
Number of extensions: 82499
Number of successful extensions: 156
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 149
Number of HSP's gapped (non-prelim): 7
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)