BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16442
(116 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3TQI7|CI078_MOUSE Uncharacterized protein C9orf78 homolog OS=Mus musculus PE=1 SV=2
Length = 289
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 83/117 (70%), Gaps = 8/117 (6%)
Query: 1 MKYIEEQLSKRKKGEETKEGGQGEEGGVNYCSPEEAALQAVPDHLRQSSTHQSEEMLSNQ 60
MKYIE +L KRK G +E + + C L +P+++R SS ++EEMLSNQ
Sbjct: 116 MKYIETELKKRK-GIVEQEEQKAKPKNAEDC------LYELPENIRVSSAKKTEEMLSNQ 168
Query: 61 MLSGIPEVDLGIEAKIRNIEATEEAKLKLLWDRHN-KKDGPSQFVPTNMAVNFVQHN 116
MLSGIPEVDLGI+AKI+NI +TE+AK +LL ++ N KKD + FVPTNMAVN+VQHN
Sbjct: 169 MLSGIPEVDLGIDAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHN 225
>sp|Q9NZ63|CI078_HUMAN Uncharacterized protein C9orf78 OS=Homo sapiens GN=C9orf78 PE=1
SV=1
Length = 289
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 82/117 (70%), Gaps = 8/117 (6%)
Query: 1 MKYIEEQLSKRKKGEETKEGGQGEEGGVNYCSPEEAALQAVPDHLRQSSTHQSEEMLSNQ 60
MKYIE +L KRK E +E + E L +P+++R SS ++EEMLSNQ
Sbjct: 116 MKYIETELKKRKGIVEHEEQKVKPKNA-------EDCLYELPENIRVSSAKKTEEMLSNQ 168
Query: 61 MLSGIPEVDLGIEAKIRNIEATEEAKLKLLWDRHN-KKDGPSQFVPTNMAVNFVQHN 116
MLSGIPEVDLGI+AKI+NI +TE+AK +LL ++ N KKD + FVPTNMAVN+VQHN
Sbjct: 169 MLSGIPEVDLGIDAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHN 225
>sp|Q5RC87|CI078_PONAB Uncharacterized protein C9orf78 homolog OS=Pongo abelii PE=2 SV=1
Length = 289
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 81/117 (69%), Gaps = 8/117 (6%)
Query: 1 MKYIEEQLSKRKKGEETKEGGQGEEGGVNYCSPEEAALQAVPDHLRQSSTHQSEEMLSNQ 60
MKYIE +L KRK E +E + E L +P+++R SS ++EEMLSNQ
Sbjct: 116 MKYIETELKKRKGIVEHEEQKVKPKNA-------EDCLYELPENIRVSSAKKTEEMLSNQ 168
Query: 61 MLSGIPEVDLGIEAKIRNIEATEEAKLKLLWDRHN-KKDGPSQFVPTNMAVNFVQHN 116
MLSGIPEVD GI+AKI+NI +TE+AK +LL ++ N KKD + FVPTNMAVN+VQHN
Sbjct: 169 MLSGIPEVDQGIDAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHN 225
>sp|P0C631|FUR_CAMJE Ferric uptake regulation protein OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=fur PE=1
SV=1
Length = 157
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 25 EGGVNYCSPEEAALQAVPDHLRQSSTHQSEEMLSNQMLSGIPEVDLGIEAKIRNIEATEE 84
+GG+ Y E L+ L S TH + E L ++ P++++GI R + EE
Sbjct: 21 QGGLKYTKQREVLLKT----LYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEE 76
Query: 85 AKL 87
A++
Sbjct: 77 AEM 79
>sp|A8FKI7|FUR_CAMJ8 Ferric uptake regulation protein OS=Campylobacter jejuni subsp.
jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=fur
PE=3 SV=1
Length = 157
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 25 EGGVNYCSPEEAALQAVPDHLRQSSTHQSEEMLSNQMLSGIPEVDLGIEAKIRNIEATEE 84
+GG+ Y E L+ L S TH + E L ++ P++++GI R + EE
Sbjct: 21 QGGLKYTKQREVLLKT----LYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEE 76
Query: 85 AKL 87
A++
Sbjct: 77 AEM 79
>sp|Q7RYR4|RSE1_NEUCR Pre-mRNA-splicing factor rse-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rse-1 PE=3 SV=2
Length = 1209
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 28 VNYCSPEEAALQAVPDHLRQSSTHQSEEMLSNQMLSGIPEVDLGIEAKIRNIEATEEAKL 87
V Y +P AAL+ Q T Q+ E + Q++ E+DLG+ +R T +
Sbjct: 181 VGYANPVFAALELDYTDADQDPTGQAREEVETQLV--YYELDLGLNHVVRKWSDTVDRTS 238
Query: 88 KLLWDRHNKKDGPS 101
LL+ DGPS
Sbjct: 239 SLLFQVPGGNDGPS 252
>sp|Q46463|FUR_CAMUP Ferric uptake regulation protein OS=Campylobacter upsaliensis
GN=fur PE=3 SV=1
Length = 156
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 25 EGGVNYCSPEEAALQAVPDHLRQSSTHQSEEMLSNQMLSGIPEVDLGIEAKIRNIEATEE 84
EGG+ Y E L+ L S TH + E L ++ P+ ++GI R + EE
Sbjct: 21 EGGLKYTKQREVLLKT----LYHSDTHYTPESLYMEIKQAEPDSNVGIATVYRTLNLLEE 76
Query: 85 AKL 87
A++
Sbjct: 77 AEM 79
>sp|Q9P7I8|U390_SCHPO UPF0390 protein C24B10.18 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPCC24B10.18 PE=3 SV=1
Length = 93
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 27 GVNYCSPEEAALQAVPDHLRQSSTHQSEEMLSNQMLSGIPEVDLG 71
G YC+P AA A+ DH ++ ++ + + ++++GI +G
Sbjct: 30 GARYCAPRRAA--AIKDHTINANITKTLNVRNEKLIAGIASQQVG 72
>sp|Q9Z5H8|SUCC_MYCLE Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mycobacterium
leprae (strain TN) GN=sucC PE=3 SV=1
Length = 393
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 16/81 (19%)
Query: 16 ETKEGGQGEEGGVNYCSPEEAALQAVPDHLRQSSTHQSEEMLSNQMLSGIPEVDLGIEAK 75
+ K GG+G+ GGV Y + E A Q Q++ +L + I + L +EA
Sbjct: 47 QVKTGGRGKAGGVKYAATPEEAYQ------------QAKNILGLDIKGHIVKKLLVVEAS 94
Query: 76 IRNIEATEEAKLKLLWDRHNK 96
+ EE L L DR N+
Sbjct: 95 ----DIAEEYYLSFLLDRANR 111
>sp|B8ZU00|SUCC_MYCLB Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mycobacterium
leprae (strain Br4923) GN=sucC PE=3 SV=1
Length = 393
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 16/81 (19%)
Query: 16 ETKEGGQGEEGGVNYCSPEEAALQAVPDHLRQSSTHQSEEMLSNQMLSGIPEVDLGIEAK 75
+ K GG+G+ GGV Y + E A Q Q++ +L + I + L +EA
Sbjct: 47 QVKTGGRGKAGGVKYAATPEEAYQ------------QAKNILGLDIKGHIVKKLLVVEAS 94
Query: 76 IRNIEATEEAKLKLLWDRHNK 96
+ EE L L DR N+
Sbjct: 95 ----DIAEEYYLSFLLDRANR 111
>sp|Q11025|Y1355_MYCTU Uncharacterized protein Rv1355c/MT1398 OS=Mycobacterium
tuberculosis GN=Rv1355c PE=4 SV=1
Length = 715
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 36 AALQAVPDHLRQSSTHQSEEMLSNQMLSGIPEVDLGIEAKIRNIEATEEAKLKLL 90
A + A D +R + EEM+S G P +D GI+ + +++ E L +L
Sbjct: 520 ATILAAADRIRYLTPRLHEEMMSELRWPGDPSLDAGIDVRSLELDSGELRVLDIL 574
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.127 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,636,430
Number of Sequences: 539616
Number of extensions: 1591689
Number of successful extensions: 4666
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 4649
Number of HSP's gapped (non-prelim): 32
length of query: 116
length of database: 191,569,459
effective HSP length: 84
effective length of query: 32
effective length of database: 146,241,715
effective search space: 4679734880
effective search space used: 4679734880
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)