Query psy16442
Match_columns 116
No_of_seqs 110 out of 120
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 21:27:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3345|consensus 100.0 1.9E-43 4E-48 281.9 6.4 110 1-116 114-224 (275)
2 PF07052 Hep_59: Hepatocellula 100.0 2.8E-31 6.1E-36 187.1 5.7 87 1-90 17-104 (104)
3 PHA02734 coat protein; Provisi 26.9 67 0.0015 24.4 2.7 28 64-91 28-60 (149)
4 PF15040 Humanin: Humanin fami 17.9 31 0.00067 18.8 -0.5 12 63-74 11-22 (24)
5 TIGR01615 A_thal_3542 uncharac 16.9 1.6E+02 0.0034 22.0 2.9 49 59-115 71-121 (131)
6 KOG4647|consensus 15.4 74 0.0016 26.3 0.9 35 77-116 210-244 (263)
7 PF11786 Aft1_HRA: Aft1 HRA do 14.5 65 0.0014 22.3 0.3 13 55-67 18-30 (79)
8 PF12289 Rotavirus_VP1: Rotavi 13.6 1E+02 0.0022 19.6 0.9 10 78-87 3-12 (52)
9 PF05972 APC_15aa: APC 15 resi 12.4 72 0.0016 15.9 0.0 12 104-115 4-15 (16)
10 PF10005 DUF2248: Uncharacteri 12.0 1.9E+02 0.0041 24.9 2.4 33 60-94 81-113 (343)
No 1
>KOG3345|consensus
Probab=100.00 E-value=1.9e-43 Score=281.93 Aligned_cols=110 Identities=61% Similarity=0.871 Sum_probs=96.2
Q ss_pred ChhHHHHHHhhhCCCCCcCCCCCCCCCCCCCChHHHhhhhcCccccccccchhhhhhhhhhhcCCCcccccHHHHhhcHH
Q psy16442 1 MKYIEEQLSKRKKGEETKEGGQGEEGGVNYCSPEEAALQAVPDHLRQSSTHQSEEMLSNQMLSGIPEVDLGIEAKIRNIE 80 (116)
Q Consensus 1 MkYIEeELaKR~g~~~~~~~~~~~~~~~~~~~~~ed~Ly~~Pe~l~~~~~~~~ee~lS~~mL~gI~EVdLgie~KlkNIe 80 (116)
|||||+||+||+|....+.++.. ..+...+||||.+|+||+++++++++||||+|||+|||||||||++||+||+
T Consensus 114 ~KYIeqeLqkrkg~~~~e~eeqk-----~k~~naED~Ly~lpdhlk~ssskks~EmlS~qml~GIpEVdLgI~~kikNI~ 188 (275)
T KOG3345|consen 114 MKYIEQELQKRKGTSIVEHEEQK-----NKPKNAEDCLYELPDHLKVSSSKKSEEMLSNQMLSGIPEVDLGIDAKIKNIE 188 (275)
T ss_pred HHHHHHHHHHhhccchhhhhhhh-----cccCCHHHHHHhhhhhhccccccchHHHHHHHHHcCCcccccchhhhhhhHH
Confidence 79999999999995443322211 1333568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcC-CCCCCCCcccchhhhhhhcC
Q psy16442 81 ATEEAKLKLLWDRHNK-KDGPSQFVPTNMAVNFVQHN 116 (116)
Q Consensus 81 ~TE~AKr~l~~~~~~k-k~~~s~fvp~n~a~n~~qh~ 116 (116)
+||+|| +||++++++ ++|+++|||+||+|||||||
T Consensus 189 eTE~aK-rlLqe~~~~~~~g~~~~ipt~~a~ny~qr~ 224 (275)
T KOG3345|consen 189 ETEDAK-RLLQEQQNKKKDGETSFIPTNMAVNYVQRN 224 (275)
T ss_pred hhHHHH-HHHHHHHhccCCCCCCCCccchhhhHHHhh
Confidence 999999 788888876 69999999999999999997
No 2
>PF07052 Hep_59: Hepatocellular carcinoma-associated antigen 59; InterPro: IPR010756 This family represents a conserved region approximately 100 residues long within mammalian hepatocellular carcinoma-associated antigen 59 and similar proteins. Family members are found in a variety of eukaryotes, mainly as hypothetical proteins.
Probab=99.97 E-value=2.8e-31 Score=187.12 Aligned_cols=87 Identities=56% Similarity=0.837 Sum_probs=70.3
Q ss_pred ChhHHHHHHhhhCCCCCcCC-CCCCCCCCCCCChHHHhhhhcCccccccccchhhhhhhhhhhcCCCcccccHHHHhhcH
Q psy16442 1 MKYIEEQLSKRKKGEETKEG-GQGEEGGVNYCSPEEAALQAVPDHLRQSSTHQSEEMLSNQMLSGIPEVDLGIEAKIRNI 79 (116)
Q Consensus 1 MkYIEeELaKR~g~~~~~~~-~~~~~~~~~~~~~~ed~Ly~~Pe~l~~~~~~~~ee~lS~~mL~gI~EVdLgie~KlkNI 79 (116)
|+|||++|++|+|....... ..........+++..++||.+|++|+ .++.++++|++|||||||||||+++||+||
T Consensus 17 ~~YIE~eL~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~l~---~~~~~~~~s~~ml~gI~EVdLg~eaklkNI 93 (104)
T PF07052_consen 17 MKYIEEELAKRKGRAAESDAEQSDSESSANNSDPPEDELYRLPEHLK---AKRSEEMLSNQMLGGIPEVDLGIEAKLKNI 93 (104)
T ss_pred HHHHHHHHHHhhccCcccccccccccccccccCcHHHHHHhCcHHhh---cccccccccHHHhcCCceecCcHHHHHhhH
Confidence 79999999999998722111 11112223455566789999999998 347789999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy16442 80 EATEEAKLKLL 90 (116)
Q Consensus 80 e~TE~AKr~l~ 90 (116)
++||+|||+||
T Consensus 94 e~TE~Akr~ll 104 (104)
T PF07052_consen 94 ERTEKAKRRLL 104 (104)
T ss_pred HHHHHHHHhcC
Confidence 99999999986
No 3
>PHA02734 coat protein; Provisional
Probab=26.89 E-value=67 Score=24.35 Aligned_cols=28 Identities=36% Similarity=0.471 Sum_probs=19.9
Q ss_pred CCCcccc---cHHHHhh--cHHHHHHHHHHHhh
Q psy16442 64 GIPEVDL---GIEAKIR--NIEATEEAKLKLLW 91 (116)
Q Consensus 64 gI~EVdL---gie~Klk--NIe~TE~AKr~l~~ 91 (116)
|-|||+| |++++++ |-|.+-+|=-.|+.
T Consensus 28 GyPevsLRLAGEEAn~~~~G~e~~k~aIHeiIK 60 (149)
T PHA02734 28 GFPEVSLKLAGEEANARKAGDANAKAAIHAIIK 60 (149)
T ss_pred CCceeehhhhhhHhhhcccChHHHHHHHHHHHH
Confidence 7899998 7888776 66776666444443
No 4
>PF15040 Humanin: Humanin family; PDB: 2GD3_A 1Y32_A.
Probab=17.88 E-value=31 Score=18.81 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=8.2
Q ss_pred cCCCcccccHHH
Q psy16442 63 SGIPEVDLGIEA 74 (116)
Q Consensus 63 ~gI~EVdLgie~ 74 (116)
--|.||||++..
T Consensus 11 L~~~eiDL~~KR 22 (24)
T PF15040_consen 11 LLTSEIDLSMKR 22 (24)
T ss_dssp HHHCCTTSTTS-
T ss_pred EEecccccceee
Confidence 357899998654
No 5
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=16.86 E-value=1.6e+02 Score=22.00 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=36.3
Q ss_pred hhhhcCCCcccccHHHHhhcHHHH--HHHHHHHhhhhhcCCCCCCCCcccchhhhhhhc
Q psy16442 59 NQMLSGIPEVDLGIEAKIRNIEAT--EEAKLKLLWDRHNKKDGPSQFVPTNMAVNFVQH 115 (116)
Q Consensus 59 ~~mL~gI~EVdLgie~KlkNIe~T--E~AKr~l~~~~~~kk~~~s~fvp~n~a~n~~qh 115 (116)
.++|..+|+|=.|-..+|+-|... ++||+.|-+ ....+|+=-...|+|.
T Consensus 71 ~~ll~~LP~vFVG~~~rL~~iV~~mc~Aak~Slk~--------~gmhlPPWRk~~ym~a 121 (131)
T TIGR01615 71 KRLLESLPEVFVGTTERLRQLVRLMCDAAKKSLKK--------KGMPLPPWRKNRYMQS 121 (131)
T ss_pred HHHHHhCCcceECCHHHHHHHHHHHHHHHHHHHHH--------cCCCCCCCCchHHHHH
Confidence 488999999999999999999764 666766521 2245777777777763
No 6
>KOG4647|consensus
Probab=15.41 E-value=74 Score=26.31 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=28.9
Q ss_pred hcHHHHHHHHHHHhhhhhcCCCCCCCCcccchhhhhhhcC
Q psy16442 77 RNIEATEEAKLKLLWDRHNKKDGPSQFVPTNMAVNFVQHN 116 (116)
Q Consensus 77 kNIe~TE~AKr~l~~~~~~kk~~~s~fvp~n~a~n~~qh~ 116 (116)
.||-=|..-+|.|.+. =+-++|.|-..++=|++||
T Consensus 210 ~~~S~~~s~~RalIKN-----l~vssfFP~~~~~~ff~~n 244 (263)
T KOG4647|consen 210 DLISYSQSLKRALIKN-----LVVSSFFPLSTAVFFFNRN 244 (263)
T ss_pred CchhHHHHHHHHHHHh-----hhHHHHHHHHHHHhhhhcC
Confidence 4677788888888654 5678999999999999997
No 7
>PF11786 Aft1_HRA: Aft1 HRA domain; InterPro: IPR021755 This domain is found in the transcription factor Aft1 which is required for a wide range of stress responses. The HRA domain is involved in meiotic recombination. It has been shown to be necessary and sufficient to activate recombination [].
Probab=14.55 E-value=65 Score=22.26 Aligned_cols=13 Identities=38% Similarity=0.368 Sum_probs=10.5
Q ss_pred hhhhhhhhcCCCc
Q psy16442 55 EMLSNQMLSGIPE 67 (116)
Q Consensus 55 e~lS~~mL~gI~E 67 (116)
.-||++||+|=.+
T Consensus 18 GPLSPAML~GP~~ 30 (79)
T PF11786_consen 18 GPLSPAMLAGPQG 30 (79)
T ss_pred CCCChhhhcCCcc
Confidence 3589999999774
No 8
>PF12289 Rotavirus_VP1: Rotavirus VP1 structural protein; InterPro: IPR022071 This domain family is found in viruses, and is approximately 50 amino acids in length. The family is found in association with PF02123 from PFAM. VP1 is a structural protein of the inner core layer of the rotavirus virion. It complexes with VP2 and Vp3 to form this layer. ; GO: 0003968 RNA-directed RNA polymerase activity; PDB: 2R7X_B 2R7S_A 2R7Q_A 2R7U_A 2R7R_A 2R7T_A 2R7V_A 2R7W_A 2R7O_A.
Probab=13.60 E-value=1e+02 Score=19.57 Aligned_cols=10 Identities=60% Similarity=0.670 Sum_probs=8.1
Q ss_pred cHHHHHHHHH
Q psy16442 78 NIEATEEAKL 87 (116)
Q Consensus 78 NIe~TE~AKr 87 (116)
-|..||+||-
T Consensus 3 gia~tekakl 12 (52)
T PF12289_consen 3 GIALTEKAKL 12 (52)
T ss_dssp HHHHHHHHGG
T ss_pred chhhhHHhhh
Confidence 4889999973
No 9
>PF05972 APC_15aa: APC 15 residue motif; InterPro: IPR009240 The 15 aa repeat is found in the APC protein family. It is involved in binding beta-catenin [] along with the IPR009223 from INTERPRO repeats. Many human cancer mutations map to the region around these motifs, and may be involved in disrupting their binding of beta-catenin.; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1JPP_C.
Probab=12.44 E-value=72 Score=15.88 Aligned_cols=12 Identities=8% Similarity=0.484 Sum_probs=5.2
Q ss_pred cccchhhhhhhc
Q psy16442 104 VPTNMAVNFVQH 115 (116)
Q Consensus 104 vp~n~a~n~~qh 115 (116)
-|+||+.-|.-+
T Consensus 4 qP~dyS~kY~e~ 15 (16)
T PF05972_consen 4 QPIDYSLKYSEE 15 (16)
T ss_dssp ----CCCCTTT-
T ss_pred cccchhhhcccc
Confidence 488888877643
No 10
>PF10005 DUF2248: Uncharacterized protein conserved in bacteria (DUF2248); InterPro: IPR011201 This is a family of uncharacterised bacterial proteins.
Probab=12.05 E-value=1.9e+02 Score=24.89 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=23.6
Q ss_pred hhhcCCCcccccHHHHhhcHHHHHHHHHHHhhhhh
Q psy16442 60 QMLSGIPEVDLGIEAKIRNIEATEEAKLKLLWDRH 94 (116)
Q Consensus 60 ~mL~gI~EVdLgie~KlkNIe~TE~AKr~l~~~~~ 94 (116)
+...-|| ||++..-+.--.+.|.|||+|+-.-.
T Consensus 81 rlnrtiP--dls~~~n~~~W~~~E~AKRRL~y~L~ 113 (343)
T PF10005_consen 81 RLNRTIP--DLSDPENLERWRRIEAAKRRLFYSLL 113 (343)
T ss_pred hccCcCC--CCcChhHHHHHHHHHHHHHHHHHHHH
Confidence 3345566 55555667778899999999986544
Done!