Query psy16442
Match_columns 116
No_of_seqs 110 out of 120
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 21:28:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qdq_A Talin-1; dimerisation d 12.5 1.3E+02 0.0044 18.2 2.1 25 81-105 23-48 (50)
2 2jxz_A Calcitonin; A-helix, am 11.3 72 0.0025 17.7 0.6 11 101-111 20-30 (33)
3 1y32_A Humanin; solution struc 11.1 13 0.00043 19.9 -2.5 15 63-77 11-25 (26)
4 1bku_A Calcitonin; hormone, ca 9.9 75 0.0026 17.6 0.3 11 101-111 20-30 (33)
5 3faj_A ORF131, putative unchar 9.7 96 0.0033 22.5 0.9 28 64-91 48-80 (151)
6 2g48_C Islet amyloid polypepti 9.4 94 0.0032 17.7 0.7 15 97-111 21-35 (37)
7 3plv_C 66 kDa U4/U6.U5 small n 8.6 1.9E+02 0.0066 14.4 1.6 12 78-89 3-14 (21)
8 3u3c_B Paxillin LD2 peptide; 4 7.8 1E+02 0.0035 16.1 0.3 7 110-116 14-20 (26)
9 3e5a_B Targeting protein for X 7.8 1.1E+02 0.0039 18.0 0.6 9 104-113 13-21 (44)
10 3e8t_A Takeout 1, takeout-like 7.2 1.5E+02 0.0053 21.2 1.2 15 57-71 23-37 (220)
No 1
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=12.47 E-value=1.3e+02 Score=18.23 Aligned_cols=25 Identities=36% Similarity=0.290 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhhhhcC-CCCCCCCcc
Q psy16442 81 ATEEAKLKLLWDRHNK-KDGPSQFVP 105 (116)
Q Consensus 81 ~TE~AKr~l~~~~~~k-k~~~s~fvp 105 (116)
+-|.|+.+|..=++.+ ++.++.|.+
T Consensus 23 ELEeAr~~La~iR~~kY~~~~~~~~~ 48 (50)
T 2qdq_A 23 ELEEARKKLAQIRQQQYKFLPSELRD 48 (50)
T ss_dssp HHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 5678888887766654 456665543
No 2
>2jxz_A Calcitonin; A-helix, amidation, cleavage on PAIR of basic residues, HORM secreted; NMR {Synthetic}
Probab=11.34 E-value=72 Score=17.69 Aligned_cols=11 Identities=36% Similarity=0.450 Sum_probs=8.3
Q ss_pred CCCcccchhhh
Q psy16442 101 SQFVPTNMAVN 111 (116)
Q Consensus 101 s~fvp~n~a~n 111 (116)
.-|+|||+..+
T Consensus 20 ~~f~pT~vG~~ 30 (33)
T 2jxz_A 20 HTFPQTNTGVG 30 (33)
T ss_dssp HHCSSGGGCTT
T ss_pred cccCCCCcCCC
Confidence 56899998754
No 3
>1y32_A Humanin; solution structure, alzheimer'S disease, neuroprotection, unknown function; NMR {Synthetic} PDB: 2gd3_A
Probab=11.10 E-value=13 Score=19.87 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=9.5
Q ss_pred cCCCcccccHHHHhh
Q psy16442 63 SGIPEVDLGIEAKIR 77 (116)
Q Consensus 63 ~gI~EVdLgie~Klk 77 (116)
-.+.||||++..++|
T Consensus 11 L~~seiDL~vKRr~~ 25 (26)
T 1y32_A 11 LLTSEIDLPVKRRAX 25 (26)
T ss_dssp HHHHHTTSSSSCCC-
T ss_pred EEcccccchheeecc
Confidence 346789998765443
No 4
>1bku_A Calcitonin; hormone, calcium-regulating hormone; NMR {Anguilla japonica} SCOP: j.6.1.1 PDB: 1byv_A* 1bzb_A* 2glh_A 1fb9_A* 2glg_A
Probab=9.86 E-value=75 Score=17.61 Aligned_cols=11 Identities=9% Similarity=0.302 Sum_probs=8.6
Q ss_pred CCCcccchhhh
Q psy16442 101 SQFVPTNMAVN 111 (116)
Q Consensus 101 s~fvp~n~a~n 111 (116)
.-|+|||+..+
T Consensus 20 ~~f~pT~vG~~ 30 (33)
T 1bku_A 20 QTYPRTDVGAG 30 (33)
T ss_dssp TTCSSSSCSCS
T ss_pred cccCCCCcCCC
Confidence 67899998654
No 5
>3faj_A ORF131, putative uncharacterized protein; archaeal virus, extremophiles, bicaudavirus, structural PROT binding protein; 1.70A {Acidianus two-tailed virus}
Probab=9.68 E-value=96 Score=22.48 Aligned_cols=28 Identities=46% Similarity=0.538 Sum_probs=21.2
Q ss_pred CCCcccc---cHHHHhh--cHHHHHHHHHHHhh
Q psy16442 64 GIPEVDL---GIEAKIR--NIEATEEAKLKLLW 91 (116)
Q Consensus 64 gI~EVdL---gie~Klk--NIe~TE~AKr~l~~ 91 (116)
|-|||+| |++|+++ |-|.|-+|=-.|+.
T Consensus 48 GYPevsLRLAGEEAnl~~sG~E~~keaIHeiIK 80 (151)
T 3faj_A 48 GYPEVTLKLAGEEANARRAGDERTKEAIHAIVK 80 (151)
T ss_dssp EETHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCceeeehhcchhhhhcccChHHHHHHHHHHHH
Confidence 6799998 7888877 77887777555554
No 6
>2g48_C Islet amyloid polypeptide; protein-peptide complex, hydrolase; 2.60A {Homo sapiens} PDB: 2kb8_A 3hgz_D 2l86_A 2kj7_A
Probab=9.41 E-value=94 Score=17.69 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=11.0
Q ss_pred CCCCCCCcccchhhh
Q psy16442 97 KDGPSQFVPTNMAVN 111 (116)
Q Consensus 97 k~~~s~fvp~n~a~n 111 (116)
....+-|+|||+..+
T Consensus 21 ~~~~~nf~PT~VGs~ 35 (37)
T 2g48_C 21 NNFGAILSSTNVGSN 35 (37)
T ss_pred cccccccCCCcCCCC
Confidence 355678999998654
No 7
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=8.60 E-value=1.9e+02 Score=14.36 Aligned_cols=12 Identities=42% Similarity=0.553 Sum_probs=8.5
Q ss_pred cHHHHHHHHHHH
Q psy16442 78 NIEATEEAKLKL 89 (116)
Q Consensus 78 NIe~TE~AKr~l 89 (116)
+||+|-+.+.+|
T Consensus 3 siEEtnk~r~~l 14 (21)
T 3plv_C 3 SIEETNELRASL 14 (26)
T ss_dssp CHHHHHHHHHHT
T ss_pred cHHHHHHHHHHc
Confidence 688888776544
No 8
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=7.84 E-value=1e+02 Score=16.08 Aligned_cols=7 Identities=71% Similarity=0.914 Sum_probs=3.9
Q ss_pred hhhhhcC
Q psy16442 110 VNFVQHN 116 (116)
Q Consensus 110 ~n~~qh~ 116 (116)
.|-||||
T Consensus 14 lnavqhn 20 (26)
T 3u3c_B 14 LNAVQHN 20 (26)
T ss_pred HhhhccC
Confidence 4556665
No 9
>3e5a_B Targeting protein for XKLP2; aurora A, serine/threonine-protein kinase, cofactor, TPX2, V inhibitor, phosphorylation, ATP-binding, cell cycle; HET: TPO VX6; 2.30A {Homo sapiens} PDB: 3ha6_B* 1ol5_B*
Probab=7.78 E-value=1.1e+02 Score=17.97 Aligned_cols=9 Identities=33% Similarity=0.959 Sum_probs=6.4
Q ss_pred cccchhhhhh
Q psy16442 104 VPTNMAVNFV 113 (116)
Q Consensus 104 vp~n~a~n~~ 113 (116)
+|++| .||.
T Consensus 13 aPt~f-inFt 21 (44)
T 3e5a_B 13 APSDF-INFS 21 (44)
T ss_dssp SCCBC-CCTT
T ss_pred CCccc-cccc
Confidence 88877 6663
No 10
>3e8t_A Takeout 1, takeout-like protein 1; transport protein; HET: UQ8; 1.30A {Epiphyas postvittana} PDB: 3e8w_A*
Probab=7.17 E-value=1.5e+02 Score=21.22 Aligned_cols=15 Identities=13% Similarity=0.426 Sum_probs=12.3
Q ss_pred hhhhhhcCCCccccc
Q psy16442 57 LSNQMLSGIPEVDLG 71 (116)
Q Consensus 57 lS~~mL~gI~EVdLg 71 (116)
+-++|-.||||+.+|
T Consensus 23 ~~~~l~~GiPelgip 37 (220)
T 3e8t_A 23 ALPTFVAGLPDHGVE 37 (220)
T ss_dssp HHHHHHTCBGGGTBC
T ss_pred HHHHhcCCCcccCCC
Confidence 347888999999876
Done!