RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16442
         (116 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.7 bits (71), Expect = 0.038
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 7/48 (14%)

Query: 44  HLRQSSTHQSEEMLSNQMLSGIPEVDLG-IEAKIRNIEATEEAKLKLL 90
           HL+     +   +     L      D   +E KIR+      A   +L
Sbjct: 480 HLKNIEHPERMTLFRMVFL------DFRFLEQKIRHDSTAWNASGSIL 521



 Score = 29.1 bits (64), Expect = 0.30
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 22/70 (31%)

Query: 43  DHLRQSSTH-QSEEMLSN-----------QMLSGIPEVDLGIEAKIRNIEATEEAKLKLL 90
           DH   + T  + + +L             ++L+  P     I   IR+  AT        
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-------- 343

Query: 91  WD--RHNKKD 98
           WD  +H   D
Sbjct: 344 WDNWKHVNCD 353


>2p5z_X Type VI secretion system component; structural genomics, unknown
           function, PSI-2, protein struct initiative; 2.60A
           {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1
          Length = 491

 Score = 27.3 bits (61), Expect = 1.3
 Identities = 5/16 (31%), Positives = 8/16 (50%)

Query: 86  KLKLLWDRHNKKDGPS 101
           ++ L +DR   K G  
Sbjct: 410 RVNLDFDRDTWKPGYE 425


>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family,
          cofactor-binding DO cysteine biosynthesis; 2.80A
          {Escherichia coli K12} SCOP: c.94.1.1
          Length = 228

 Score = 25.7 bits (57), Expect = 3.8
 Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 6/29 (20%)

Query: 44 HLRQSSTHQSEEMLSNQMLSGIPEVDLGI 72
           L Q +  +   +L N       E D+GI
Sbjct: 46 ELIQGTPQEIATLLQNG------EADIGI 68


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.7 bits (55), Expect = 3.9
 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 15/40 (37%)

Query: 73  EAK-IRNIEATEEAKLKLLWDRHNKKDGPSQFVPTNMAVN 111
           E + ++ ++A+    LKL               P  +A+ 
Sbjct: 18  EKQALKKLQAS----LKLY--------ADDS-APA-LAIK 43


>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine
           biosynthesis, transcription regulation; 1.80A
           {Klebsiella aerogenes} SCOP: c.94.1.1
          Length = 324

 Score = 25.6 bits (57), Expect = 4.3
 Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 6/29 (20%)

Query: 44  HLRQSSTHQSEEMLSNQMLSGIPEVDLGI 72
           H+ Q S  Q  E +      G    D  I
Sbjct: 125 HMHQGSPTQIAEAV----SKG--NADFAI 147


>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for
           structural genomics of infec diseases, csgid, TIM
           beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni}
          Length = 357

 Score = 25.0 bits (55), Expect = 6.4
 Identities = 8/24 (33%), Positives = 10/24 (41%)

Query: 14  GEETKEGGQGEEGGVNYCSPEEAA 37
           GEE      G +    Y  PE+ A
Sbjct: 178 GEEDGVDNTGIDNSKLYTQPEDVA 201


>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate
           aldolase, glycolysis; 1.67A {Escherichia coli} SCOP:
           c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
          Length = 358

 Score = 25.1 bits (55), Expect = 6.7
 Identities = 6/24 (25%), Positives = 8/24 (33%)

Query: 14  GEETKEGGQGEEGGVNYCSPEEAA 37
           GEE        +    Y  PE+  
Sbjct: 180 GEEDGVDNSHMDASALYTQPEDVD 203


>4ets_A Ferric uptake regulation protein; metal binding protein,
           transcription factor; 2.10A {Campylobacter jejuni subsp}
          Length = 162

 Score = 24.2 bits (53), Expect = 9.6
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 39  QAVPDHLRQSSTHQSEEMLSNQMLSGIPEVDLGIEAKI-RNIEATEEAKLKLLWDRHNKK 97
           + +   L  S TH + E L  ++    P++++GI A + R +   EEA++       +  
Sbjct: 36  EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGI-ATVYRTLNLLEEAEMV---TSISFG 91

Query: 98  DGPSQF 103
               ++
Sbjct: 92  SAGKKY 97


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.308    0.127    0.353 

Gapped
Lambda     K      H
   0.267   0.0703    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,721,416
Number of extensions: 93249
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 13
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (23.5 bits)