RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16442
         (116 letters)



>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
          receptor, N-terminal domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 156

 Score = 26.3 bits (56), Expect = 0.94
 Identities = 5/38 (13%), Positives = 10/38 (26%), Gaps = 2/38 (5%)

Query: 30 YCSPEEAALQAVPDHLRQSSTHQSEEMLSNQMLSGIPE 67
           C+           HL  +       + + Q L  +  
Sbjct: 14 RCT--RDGALDSLHHLPGAENLTELYIENQQHLQHLEL 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.127    0.353 

Gapped
Lambda     K      H
   0.267   0.0380    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 406,640
Number of extensions: 16277
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 4
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.8 bits)