BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16443
         (412 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WYS|A Chain A, Solution Structure Of The First Zf-An1 Domain Of Mouse
           Riken Cdna 2310008m20 Protein
          Length = 75

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 168 LGKQCGEPTCKQLDFLPFQCDLCKNIYCKEHMNPVQHNCTEYKDNVLLEKPTTTSIVSYK 227
           +G+ C    C+Q DFLPF CD C  I+C EH +   H C+E   NV+ E+P T    SY 
Sbjct: 13  IGQHCQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCSEV--NVVKERPKTDEHKSYS 70

Query: 228 CSESG 232
              SG
Sbjct: 71  GPSSG 75


>pdb|1WFE|A Chain A, Solution Structure Of The 2nd Zf-An1 Domain Of Mouse Riken
           Cdna 2310008m20 Protein
          Length = 86

 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 212 NVLLEKPTTTSIVSYKCSESGCSTLDQVEMLCEQCKHHFCVGHRF---HACHQVETSRRK 268
           NV+ E+P T    SY CS  GC+ ++ V ++C  C+ +FC+ HR    H C ++E ++ +
Sbjct: 12  NVVKERPKTDEHKSYSCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCEKLEVAKPR 71

Query: 269 MLREQ 273
           M   Q
Sbjct: 72  MAATQ 76


>pdb|1X4V|A Chain A, Solution Structure Of The Zf-An1 Domain From Human
           Hypothetical Protein Loc130617
          Length = 63

 Score = 37.0 bits (84), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 223 IVSYKCSESGCSTLDQVEMLCEQCKHHFCVGHR 255
           I + KC  +GC   + +++ CE+C  +FC+ HR
Sbjct: 10  IFTNKCERAGCRQREMMKLTCERCSRNFCIKHR 42



 Score = 35.0 bits (79), Expect = 0.077,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query: 171 QCGEPTCKQLDFLPFQCDLCKNIYCKEHMNPVQHNCT 207
           +C    C+Q + +   C+ C   +C +H +P+ H+C+
Sbjct: 14  KCERAGCRQREMMKLTCERCSRNFCIKHRHPLDHDCS 50


>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
           With An Edc3-Fdf Peptide
 pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
           With An Edc3-Fdf Peptide
 pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
           With An Edc3-Fdf Peptide
 pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
           With An Edc3-Fdf Peptide
          Length = 193

 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 140 WTDLALSQLILFLNSQQHFVIFIMELPQLGKQCGEPTCKQLD------FLPFQCDLCKNI 193
           ++ L ++Q I+F NS Q   +   ++ QLG  C     K         F  F+  LC+N+
Sbjct: 39  FSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNL 98

Query: 194 YCKE 197
            C +
Sbjct: 99  VCTD 102


>pdb|2Q2E|A Chain A, Crystal Structure Of The Topoisomerase Vi Holoenzyme From
           Methanosarcina Mazei
          Length = 369

 Score = 28.5 bits (62), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 96  DIVDNEWKEDKLPSDDISVPQNELPDP 122
           DIV+ E   DKL   D+S  ++EL DP
Sbjct: 294 DIVEYELSTDKLTEQDVSALRSELSDP 320


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,143,017
Number of Sequences: 62578
Number of extensions: 479073
Number of successful extensions: 973
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 966
Number of HSP's gapped (non-prelim): 11
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)