RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16443
(412 letters)
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 75
Score = 81.6 bits (201), Expect = 1e-19
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 163 MELPQLGKQCGEPTCKQLDFLPFQCDLCKNIYCKEHMNPVQHNCTEYKDNVLLEKPTTTS 222
M +G+ C C+Q DFLPF CD C I+C EH + H C+E NV+ E+P T
Sbjct: 8 MAELDIGQHCQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCSEV--NVVKERPKTDE 65
Query: 223 IVSYKCSESG 232
SY SG
Sbjct: 66 HKSYSGPSSG 75
Score = 38.5 bits (89), Expect = 2e-04
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 228 CSESGCSTLDQVEMLCEQCKHHFCVGHRF---HACHQVETSRRK 268
C C D + +C+ C FC+ HR H C +V + +
Sbjct: 17 CQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCSEVNVVKER 60
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.80.1.1
Length = 86
Score = 58.3 bits (140), Expect = 3e-11
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 204 HNCTEYKDNVLLEKPTTTSIVSYKCSESGCSTLDQVEMLCEQCKHHFCVGHRF---HACH 260
C+E NV+ E+P T SY CS GC+ ++ V ++C C+ +FC+ HR H C
Sbjct: 6 SGCSE--VNVVKERPKTDEHKSYSCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCE 63
Query: 261 QVETSRRKMLREQ 273
++E ++ +M Q
Sbjct: 64 KLEVAKPRMAATQ 76
Score = 47.5 bits (112), Expect = 2e-07
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 171 QCGEPTCKQLDFLPFQCDLCKNIYCKEHMNPVQHNCT 207
C C ++ + C C+ +C H + H+C
Sbjct: 27 SCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCE 63
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.0 bits (147), Expect = 4e-10
Identities = 68/454 (14%), Positives = 135/454 (29%), Gaps = 142/454 (31%)
Query: 7 GNCNCQGLIIPIVKR---------EGRQDRKKPPVLRINLICLGSANLALTRLLSISLIY 57
NCN ++ ++++ R D LRI+ S L RLL S Y
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-----SIQAELRRLLK-SKPY 243
Query: 58 ITRLAIILLDFNDLELTSCFSY-ATILMDSQVQSQGRLLDIVDNEWKEDKLPSDDISVPQ 116
L ++LL+ + + + F+ IL+ ++ + + D + + D S+
Sbjct: 244 ENCL-LVLLNVQNAKAWNAFNLSCKILLTTRFKQ---VTDFLSAA-TTTHISLDHHSMT- 297
Query: 117 NELPDPDSDNGDSHLTLREQESKWTDLALSQLILFLNSQQHFVIFIMELPQLGKQCGEPT 176
LT E S L+ +L+ + +LP+
Sbjct: 298 --------------LTPDE--------VKSLLLKYLDCR------PQDLPREVLTTN--- 326
Query: 177 CKQLDFLPFQCDLCKNIYCKEHMNPVQHNCTEYKDNVLLEKPTTTSIVSYKCSESGCSTL 236
P + + ++ + + +K +V +K TT S L
Sbjct: 327 -------PRRLSIIAES-IRDGLATWDN----WK-HVNCDKLTTIIESSLNV-------L 366
Query: 237 DQVEMLCEQCKHHFCVGHRFHACHQVETSRRKMLREQWKIPKEQFK----QAKLIADKQI 292
+ E F + IP +
Sbjct: 367 EPAEYR-----------KMFDRL--------SVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 293 EEKLSK---AEIQTENRPLALKLRLMKLKSKAVGD---HR------------------IP 328
KL K E Q + +++ ++LK K + HR P
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 329 TADR-VYFNI--HAPKIEPSPGQEKCKPIYVSRDWSLGKVIDFAATKLKVVNENRNPGVS 385
D+ Y +I H IE + +++ F K++ + N S
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD--------FRFLEQKIRHDSTAWNASGS 519
Query: 386 -----AKLRLFK---TSGEPIGDEFSQILGELIK 411
+L+ +K +P ++ +++ ++
Sbjct: 520 ILNTLQQLKFYKPYICDNDP---KYERLVNAILD 550
Score = 47.9 bits (113), Expect = 4e-06
Identities = 57/402 (14%), Positives = 106/402 (26%), Gaps = 152/402 (37%)
Query: 66 LDFNDLE--LTSCFS---YATILMDSQVQSQG-RLLDIV------------------DNE 101
D D++ S S I+M S RL + + +
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 102 W------KEDKLPSDDISVPQNELPDPDSDN---GDSHLTLREQESKWTDLALSQLILFL 152
+ E + PS + + +DN +++ R Q L L Q +L L
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-RLQPY----LKLRQALLEL 147
Query: 153 NSQQHFVIFIMELPQLGKQC--GEPTCKQLDFLPFQCDLCKNIY------CKEHMNPVQH 204
++ +I + GK + C QC + I+ C
Sbjct: 148 RPAKNVLIDGV--LGSGKTWVALD-VCLSYKV---QCKMDFKIFWLNLKNCNS------- 194
Query: 205 NCTEYKDNVLLEKPTTTSIVSYKCSESGCSTLDQVEMLCEQCKHHFCVGHRFHACHQVET 264
+LE +D + H + R H ++
Sbjct: 195 ------PETVLEMLQKL-----------LYQIDP--NWTSRSDHSSNIKLRIH---SIQA 232
Query: 265 SRRKMLREQWKIPKEQFKQAKLIADKQIEEKLSKAEIQTENRPLALKLRLMKLKSKAVGD 324
R++L+ + ++ L+ V +
Sbjct: 233 ELRRLLKSK------PYENCLLVLLN-------------------------------VQN 255
Query: 325 HRIPTADRVYFNIHAPKIEPSPGQEKCKPIYVSRDWSLGKVIDF--AATKLKVVNENRNP 382
+ A FN+ CK + +R V DF AAT + ++ +
Sbjct: 256 AKAWNA----FNL------------SCKILLTTRFKQ---VTDFLSAATTTHISLDHHSM 296
Query: 383 GVSAK--LRLF-KTSGEPIGDEFSQ----------ILGELIK 411
++ L K D + I+ E I+
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Score = 32.9 bits (74), Expect = 0.23
Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 41/167 (24%)
Query: 65 LLDFNDLELTSCFSYATILMDSQVQSQGRLL---DIVDNEWKEDKLPSDDISVPQNELPD 121
L++ E T S +I ++ +V+ + IVD+ SDD+ P
Sbjct: 416 LVEKQPKEST--ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL---- 469
Query: 122 PDSDN------GDSHLTLREQESKWT-------DLA-LSQLILFLNSQQHFVIFIME-LP 166
D G HL E + T D L Q I ++ + I+ L
Sbjct: 470 ---DQYFYSHIGH-HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 167 QLGK-----QCGEPTCKQL-----DFLPFQCDLCKNIYCKEHMNPVQ 203
QL +P ++L DFLP + + +N+ C ++ + ++
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLP-KIE--ENLICSKYTDLLR 569
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 50.0 bits (119), Expect = 2e-08
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 216 EKPTTTSIVSYKCSESGCSTLDQVEMLCEQCKHHFCVGHRF---HACHQVETSRRKM 269
+ I + KC +GC + +++ CE+C +FC+ HR H C
Sbjct: 3 SGSSGRKIFTNKCERAGCRQREMMKLTCERCSRNFCIKHRHPLDHDCSGEGHPTSSG 59
Score = 49.6 bits (118), Expect = 2e-08
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 171 QCGEPTCKQLDFLPFQCDLCKNIYCKEHMNPVQHNCT 207
+C C+Q + + C+ C +C +H +P+ H+C+
Sbjct: 14 KCERAGCRQREMMKLTCERCSRNFCIKHRHPLDHDCS 50
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 4e-07
Identities = 61/399 (15%), Positives = 108/399 (27%), Gaps = 174/399 (43%)
Query: 41 GSANLALTRLLSISLIY-------ITRLAIILLDFNDLELTSCFSYATILMDSQVQSQGR 93
G+ + L + Y I A L + L + + +QG
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF----------TQG- 212
Query: 94 LLDIVDNEW--KEDKLPSDD------ISVPQNELPDPDSDNGDSHLTLREQESKWTDLAL 145
L+I+ EW P D IS P + +
Sbjct: 213 -LNIL--EWLENPSNTPDKDYLLSIPISCPL--------------------------IGV 243
Query: 146 SQLILFLNSQQHFVIFIMELPQLGKQCGEPTCKQLDFLPFQCDLCKNIYCKEHMNPVQHN 205
QL H+V+ T K L F P +
Sbjct: 244 IQLA-------HYVV---------------TAKLLGFTP------------GELRSYLKG 269
Query: 206 CTEYKDNVLLEKPTTTSIVSYKCSESGCSTLDQ----VEMLCEQCKHHFCVGHRFHACHQ 261
T + ++ T ++ ++S S + +L F +G R + +
Sbjct: 270 ATGHSQGLV-----TAVAIA--ETDSWESFFVSVRKAITVL-------FFIGVRCYEAYP 315
Query: 262 VETSRRKMLREQWK--------------IPKEQFKQ------AKLIADKQIEEKLSKAEI 301
+ +L + + + +EQ + + L A KQ+ EI
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV-------EI 368
Query: 302 QTENRP-----------L-ALKLRLMKLKSKAVGD-HRIPTADR------VYFNIHAP-- 340
N L L L L K K+ + D RIP ++R + + +P
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 341 ------------------KIEPSPGQEKCKPIYVSRDWS 361
+ + + P+Y + D S
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQI-PVYDTFDGS 466
Score = 42.7 bits (100), Expect = 2e-04
Identities = 64/412 (15%), Positives = 116/412 (28%), Gaps = 154/412 (37%)
Query: 71 LELTSCF-SYATILMDSQVQSQ-GRLLDIVDNEWKEDKLPSDDI-SVPQNELPDPDSDNG 127
EL F Y + L++ Q ++L++ E++ L +DI ++ L + D+
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 128 DSHLTLR----------EQESKWTDLALSQLILFLNSQQH----FVIFIMELPQLGKQCG 173
+ ++ K ++ A LF + IF G Q G
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSA-----LFRAVGEGNAQLVAIF-------GGQ-G 164
Query: 174 --EPTCKQL-----DFLPFQCDLCKNIYCKEHMNPVQHNCTEYKD------NVL--LEKP 218
+ ++L + DL K E ++ + + + N+L LE P
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFS--AETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 219 TTTSIVSYKCSESGCS----TLDQVEMLCEQCKHHFCVGHRFHACHQVETSR---RKMLR 271
+ T Y S S + Q L H+ V + + R L+
Sbjct: 223 SNTPDKDYLLS-IPISCPLIGVIQ---LA-----HYVV-----TAKLLGFTPGELRSYLK 268
Query: 272 ------------------EQWKIPKEQFKQAKLIADKQIE-------------------- 293
+ W E F + K I
Sbjct: 269 GATGHSQGLVTAVAIAETDSW----ESFFVS---VRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 294 EKLSKAEIQTENRP---LALK-LRLMKLKS--KAVGDHRIPTADRVY------------- 334
L + E P L++ L +++ H +P +V
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH-LPAGKQVEISLVNGAKNLVVS 380
Query: 335 --------FNIHAPKIEPSPGQEKCKPIYVSRDWSLGKVIDFAATKLKVVNE 378
N+ K + G ++ + I F+ KLK N
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSR-------------IPFSERKLKFSNR 419
Score = 38.9 bits (90), Expect = 0.003
Identities = 50/283 (17%), Positives = 78/283 (27%), Gaps = 114/283 (40%)
Query: 51 LSISLIYITRLA--II---LLDFNDLELTSCFSYATILMDSQVQSQGRLLDIV------- 98
+S LI + +LA ++ LL F EL S AT G +V
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT----------GHSQGLVTAVAIAE 285
Query: 99 DNEWKE-DKLPSDDISV------------PQNELPDP----DS-DNGD---SH-LTLREQ 136
+ W+ I+V P LP P DS +N + S L++
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP-PSILEDSLENNEGVPSPMLSIS-- 342
Query: 137 ESKWTDLALSQLILFL------------------NSQQHFVI--FIMEL----PQLGKQC 172
+L Q+ ++ N ++ V+ L L K
Sbjct: 343 -----NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 173 GEPTCKQ-------------LDFL----PFQCDLCKNIYCKEHMNPVQHNCTE--YKDNV 213
Q FL PF L + P + K+NV
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL---------LVPASDLINKDLVKNNV 448
Query: 214 L-----LEKP---TTTSIVSYKCSESGCSTLDQVEMLCEQCKH 248
++ P T S SG + V+ +
Sbjct: 449 SFNAKDIQIPVYDTFDG--SDLRVLSGSISERIVDCIIRLPVK 489
>1wg2_A Zinc finger (AN1-like) family protein; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, DNA binding protein; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 64
Score = 37.1 bits (86), Expect = 5e-04
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 176 TC-KQLDFLPFQCDLCKNIYCKEHMNPVQHNCT-EYK 210
+C K++ + F+C C + +C H P +H C+ ++K
Sbjct: 20 SCNKKVGVMGFKCK-CGSTFCGSHRYPEKHECSFDFK 55
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 64
Score = 36.7 bits (85), Expect = 7e-04
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 176 TC-KQLDFLPFQCDLCKNIYCKEHMNPVQHNCT 207
C K++ F C C +C H P H CT
Sbjct: 20 VCRKRVGLTGFMCR-CGTTFCGSHRYPEVHGCT 51
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Length = 74
Score = 36.8 bits (85), Expect = 0.001
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 176 TC-KQLDFLPFQCDLCKNIYCKEHMNPVQHNCT 207
C K++ F C C N++C H +HNC
Sbjct: 30 MCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCP 61
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 74
Score = 36.5 bits (84), Expect = 0.001
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 176 TC-KQLDFLPFQCDLCKNIYCKEHMNPVQHNCT-EYK 210
+C K++ F+C C + +C H P H C ++K
Sbjct: 30 SCNKKVGVTGFKCR-CGSTFCGTHRYPESHECQFDFK 65
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 67
Score = 33.5 bits (76), Expect = 0.013
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 180 LDFLPFQCDLCKNIYCKEHMNPVQHNCT-EYK 210
+ C C ++C H P QH+CT ++
Sbjct: 28 VQQELGSCR-CGYVFCMLHRLPEQHDCTFDHM 58
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.80.1.1
Length = 85
Score = 33.0 bits (75), Expect = 0.023
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 182 FLPFQCDLCKNIYCKEHMNPVQHNCT-EYK 210
F+C C N +C H H C +YK
Sbjct: 38 ATSFECR-CGNNFCASHRYAEAHGCNYDYK 66
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled
coil, cytoplasm, cytoskeleton, disease mutation, ligase,
metal-binding; NMR {Homo sapiens}
Length = 101
Score = 33.0 bits (75), Expect = 0.041
Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Query: 187 CDLCKNIYCKEHMNPVQHNCTEYKDNVLLEKPTTTSIVSYKCSESGCSTLDQVEMLCEQC 246
C C+ YC E + N + + L+E + I C E + M C
Sbjct: 21 CVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKV---NMYCVTD 77
Query: 247 KH---HFCVGHRFHACHQVET 264
C H HQV
Sbjct: 78 DQLICALCKLVGRHRDHQVAA 98
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.64
Identities = 7/35 (20%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 270 LREQWKIPKEQFKQAKLIADKQIEEKLSKAEIQTE 304
+R+ W+ E +Q K + + K+ + E + +
Sbjct: 87 IRK-WR---E--EQRKRLQELDAASKVMEQEWREK 115
Score = 29.7 bits (66), Expect = 1.3
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Query: 266 RRKMLREQWKIPKEQFKQAKLIADKQIE-------EKLSKAEIQTENR 306
+RK L+E K ++ + A K +E E++ K + NR
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN--KINNR 139
>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP
elongation complex, transcription/DNA/RNA complex; 2.10A
{Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A
1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A*
3e3j_C* 1aro_P 2pi4_A* 2pi5_A
Length = 883
Score = 30.3 bits (66), Expect = 1.4
Identities = 28/213 (13%), Positives = 62/213 (29%), Gaps = 9/213 (4%)
Query: 65 LLDFNDLELTSCFSYATILMDSQVQSQGRLLDIVDNEWKEDKLPSDDISVPQNELPDPDS 124
L+ + D+ + + I ++ + ++L + + K P +DI + E
Sbjct: 305 LMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKP 364
Query: 125 DNGDSHLTLREQESKWTDLALSQLILFLNSQQHFVIFIMELPQLGKQCGEPTCKQLDFLP 184
++ D E + W A + + + L Q K + P
Sbjct: 365 EDID---MNPEALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKFANHKAI----WFP 417
Query: 185 FQCDLCKNIYCKEHMNPVQHNCTEYKDNVLLEKPTTTSIVSYKCSESGCSTLDQVEMLCE 244
+ D +Y NP K + L K Y + + V+ +
Sbjct: 418 YNMDWRGRVYAVSMFNP--QGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCAGVDKVPF 475
Query: 245 QCKHHFCVGHRFHACHQVETSRRKMLREQWKIP 277
+ F + + ++ + P
Sbjct: 476 PERIKFIEENHENIMACAKSPLENTWWAEQDSP 508
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic
transcription factor, zinc binding protein, ring finger;
NMR {Homo sapiens} SCOP: g.49.1.2
Length = 59
Score = 27.1 bits (60), Expect = 1.9
Identities = 10/37 (27%), Positives = 13/37 (35%)
Query: 216 EKPTTTSIVSYKCSESGCSTLDQVEMLCEQCKHHFCV 252
E P C DQ +C C++ FCV
Sbjct: 6 EIPLEEYNGERFCYGCQGELKDQHVYVCAVCQNVFCV 42
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
membrane fusion, trafficking, transmembrane, membrane
protein; 3.20A {Pyrococcus horikoshii}
Length = 188
Score = 28.7 bits (65), Expect = 2.7
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 282 KQAKLIA---DKQIEEKLSKAEIQTENRPLALKLRLM 315
++A++ ++Q EKL +A P+AL+LR +
Sbjct: 132 RRARITLAEAERQAAEKLREAAEIISEHPMALQLRTL 168
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding,
oxidoreductase, oxylipin biosynthesis, soybean
lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine
max}
Length = 864
Score = 29.1 bits (64), Expect = 3.2
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 340 PKIEPSPGQEKCKPIYVSRD--WSLGKVIDFAATKLKVVNENRNPGVSAKLRLFKTSGEP 397
+ P EK +YV RD + K DF +K ++ + P + + + +
Sbjct: 247 ERTRTDPNSEKPGEVYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSE 306
Query: 398 IGDEFSQILGELIKG 412
+ F + G
Sbjct: 307 F-ESFEDVRSLYEGG 320
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding
rossmann fold, structural genomics; HET: MSE PG4 PGE;
1.85A {Magnetospirillum magnetotacticum}
Length = 315
Score = 28.8 bits (65), Expect = 3.2
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 18/54 (33%)
Query: 213 VLLEKPTTTSIVSYKCSESGCSTLDQVEMLCEQCKHH---FCVGH--RFHACHQ 261
VL+EKP T L + E + K V H F+ +
Sbjct: 96 VLVEKPLTL-------------DLAEAEAVAAAAKATGVMVWVEHTQLFNPAWE 136
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein
structure initiative; HET: NAD; 2.30A {Chromobacterium
violaceum}
Length = 359
Score = 28.5 bits (64), Expect = 4.6
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 18/55 (32%)
Query: 212 NVLLEKPTTTSIVSYKCSESGCSTLDQVEMLCEQCKHH---FCVGH--RFHACHQ 261
NV +EKP TL+++E L + + VG +F +
Sbjct: 94 NVFVEKPPCA-------------TLEELETLIDAARRSDVVSGVGMNFKFARPVR 135
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 28.4 bits (64), Expect = 4.6
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 18/55 (32%)
Query: 212 NVLLEKPTTTSIVSYKCSESGCSTLDQVEMLCEQCKHH---FCVGH--RFHACHQ 261
+V ++KP + T+ Q E L E VG RF ++
Sbjct: 92 HVYVDKPLAS-------------TVSQGEELIELSTKKNLNLMVGFNRRFCPMYK 133
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: g.44.1.4
Length = 86
Score = 25.7 bits (56), Expect = 8.9
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 237 DQVEMLCEQCKHHFCVGHR 255
+Q+E C QC FCV +
Sbjct: 40 EQLEATCPQCHQTFCVRCK 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.412
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,091,708
Number of extensions: 350907
Number of successful extensions: 742
Number of sequences better than 10.0: 1
Number of HSP's gapped: 736
Number of HSP's successfully gapped: 42
Length of query: 412
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 316
Effective length of database: 4,021,377
Effective search space: 1270755132
Effective search space used: 1270755132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)