RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16443
(412 letters)
>d1wfea_ g.80.1.1 (A:) AN1-type zinc finger protein 1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 60.4 bits (146), Expect = 2e-12
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 170 KQCGEPTCKQLDFLPFQCDLCKNIYCKEHMNPVQHNCTEYKDNVLLEKPTTTSIVSYKCS 229
C C ++ + C C+ +C H + H+C + LE + K
Sbjct: 26 YSCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCEK------LEVAKPRMAATQKLV 79
Query: 230 ESGCST 235
SG S+
Sbjct: 80 RSGPSS 85
Score = 54.6 bits (131), Expect = 2e-10
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 203 QHNCTEYKDNVLLEKPTTTSIVSYKCSESGCSTLDQVEMLCEQCKHHFCVGHRF---HAC 259
C+E NV+ E+P T SY CS GC+ ++ V ++C C+ +FC+ HR H C
Sbjct: 5 SSGCSEV--NVVKERPKTDEHKSYSCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDC 62
Query: 260 HQVETSRRKM 269
++E ++ +M
Sbjct: 63 EKLEVAKPRM 72
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 74
Score = 38.0 bits (88), Expect = 1e-04
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 178 KQLDFLPFQCDLCKNIYCKEHMNPVQHNCT-EYK 210
K++ F C C N++C H +HNC +YK
Sbjct: 33 KKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYK 65
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
protein At1g12440 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 74
Score = 38.0 bits (88), Expect = 1e-04
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 176 TCKQLDFLPFQCDLCKNIYCKEHMNPVQHNCT-EYK 210
+C + + C + +C H P H C ++K
Sbjct: 30 SCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFK 65
Score = 26.0 bits (57), Expect = 2.3
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 227 KCSESGCSTLDQVEML---CEQCKHHFCVGHRFHACHQ 261
K + + C + ++ + +C FC HR+ H+
Sbjct: 22 KSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHE 59
>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
protein At2g36320 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 64
Score = 37.1 bits (86), Expect = 2e-04
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 178 KQLDFLPFQCDLCKNIYCKEHMNPVQHNCT-EYK 210
K++ F C C +C H P H CT ++K
Sbjct: 23 KRVGLTGFMCR-CGTTFCGSHRYPEVHGCTFDFK 55
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 32.9 bits (75), Expect = 0.012
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 184 PFQCDLCKNIYCKEHMNPVQHNCT-EYK 210
F+C C N +C H H C +YK
Sbjct: 40 SFECR-CGNNFCASHRYAEAHGCNYDYK 66
>d1hynp_ d.112.1.2 (P:) Erythrocite membrane Band 3 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 293
Score = 31.0 bits (70), Expect = 0.24
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 71 LELTSCFSYATILMDSQVQSQGRLLD-IVDNEWKEDKLPSDD 111
LEL F+ T+L+D Q S + + ++D ED++ D
Sbjct: 53 LELRRVFTKGTVLLDLQETSLAGVANQLLDRFIFEDQIRPQD 94
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain
{Arhaeon (Methanothermobacter thermautotrophicus)
[TaxId: 145262]}
Length = 127
Score = 28.6 bits (63), Expect = 0.60
Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 10/125 (8%)
Query: 184 PFQCDLCKNIYCKEHMNPVQHNCTEYKDNVLLEKPTTTSIVSYKCSESGCSTLDQVEMLC 243
Q + I K+ V C E + L + + E
Sbjct: 11 AHQVVIV-PIIFKKAAEEVMEACRELRSR-LEAAGFRVHLDDRDIR----AGRKYYEWEM 64
Query: 244 EQCKHHFCVGHRFHACHQVETSRRKMLREQWKIPKEQFKQ--AKLIADKQIEEKLSKAEI 301
+G R SRR E+ + ++ +L+ D E ++A
Sbjct: 65 RGVPLRVEIGPRDLEKGAAVISRRDT-GEKVTADLQGIEETLRELMKDIL-ENLRTRAWE 122
Query: 302 QTENR 306
+ E+
Sbjct: 123 RMESE 127
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 29.3 bits (64), Expect = 0.68
Identities = 17/169 (10%), Positives = 45/169 (26%), Gaps = 6/169 (3%)
Query: 146 SQLILFLNSQQHFVIFIMELPQLGK-QCGEPTCKQLDFLPFQCDLCKNIYCKEHMNP--- 201
Q++ + +++ L GK + L C ++ +N
Sbjct: 8 GQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLG 67
Query: 202 --VQHNCTEYKDNVLLEKPTTTSIVSYKCSESGCSTLDQVEMLCEQCKHHFCVGHRFHAC 259
+ + + K + + S T D+ F
Sbjct: 68 FSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDA 127
Query: 260 HQVETSRRKMLREQWKIPKEQFKQAKLIADKQIEEKLSKAEIQTENRPL 308
+R + K + K I + + + + ++T++ +
Sbjct: 128 PLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDV 176
>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId:
10760]}
Length = 882
Score = 29.7 bits (66), Expect = 0.77
Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 7/115 (6%)
Query: 93 RLLDIVDNEWKEDKLPSDDISVPQNELPDPDSDNGDSHLTLREQESKWTDLALSQLILFL 152
++L + + K P +DI + E ++ E + W A +
Sbjct: 332 KVLAVANVITKWKHCPVEDIPAIEREELPMKPED---IDMNPEALTAWKRAAAAVYRKDK 388
Query: 153 NSQQHFVIFIMELPQLGKQCGEPTCKQLDFLPFQCDLCKNIYCKEHMNPVQHNCT 207
+ + L Q K + P+ D +Y NP ++ T
Sbjct: 389 ARKSRRISLEFMLEQANKFANHKAI----WFPYNMDWRGRVYAVSMFNPQGNDMT 439
>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein
KsgA {Escherichia coli [TaxId: 562]}
Length = 252
Score = 29.1 bits (64), Expect = 0.96
Identities = 10/136 (7%), Positives = 28/136 (20%), Gaps = 2/136 (1%)
Query: 161 FIMELPQLGKQCGEPTCKQLDFLPFQCDLCKNIYCKEHMNPVQHNCTEYKDNVLLEKPTT 220
+ + P + Q ++ + + + +
Sbjct: 100 YNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLE 159
Query: 221 TSIVSYKCSESGCSTLDQVEMLCEQCKHHFCVGHRFHACHQVETSRRKMLREQWK--IPK 278
++ S + ++ V + RRK +R
Sbjct: 160 VPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSV 219
Query: 279 EQFKQAKLIADKQIEE 294
E + + E
Sbjct: 220 EVLTGMGIDPAMRAEN 235
>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein
desaturase {Castor bean (Ricinus communis) [TaxId:
3988]}
Length = 345
Score = 28.7 bits (64), Expect = 1.5
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 93 RLLDIVDNEWKEDKLPSDDISVPQNELPDPDSDNGDSHLT-LREQESKWTDLALSQLILF 151
L V+ W+ PQ+ LPDP SD D + LRE+ + D L+
Sbjct: 35 VHLKPVEKCWQ-----------PQDFLPDPASDGFDEQVRELRERAKEIPDDYFVVLVGD 83
Query: 152 LNSQQH 157
+ +++
Sbjct: 84 MITEEA 89
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein
PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 60
Score = 26.0 bits (57), Expect = 1.5
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 235 TLDQVEMLCEQCKHHFCVGHRFHACHQVETSRRKMLR 271
+ D+V Q + C + ++ RR + R
Sbjct: 16 SADRVRWEHIQRIYEMCDRNVSETARRLNMHRRTLQR 52
>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 25.7 bits (56), Expect = 2.1
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 177 CKQLDFLPFQCDLCKNIYCKEHMNPVQHNCTEY 209
C++ F+C C + + V C ++
Sbjct: 20 CQKFLLNGFRCQTCGYKFHEHCSTKVPTMCVDW 52
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 25.4 bits (55), Expect = 4.3
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 8/40 (20%)
Query: 237 DQVEMLCEQCKHHFC--------VGHRFHACHQVETSRRK 268
+Q+E C QC FC HR +C + +R
Sbjct: 33 EQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRM 72
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 24.4 bits (53), Expect = 5.7
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 232 GC--STLDQVEMLCEQCKHHFCV 252
GC DQ +C C++ FCV
Sbjct: 20 GCQGELKDQHVYVCAVCQNVFCV 42
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, C-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 127
Score = 25.4 bits (55), Expect = 7.4
Identities = 4/50 (8%), Positives = 11/50 (22%), Gaps = 3/50 (6%)
Query: 244 EQCKHHFCVGHRFHACHQVETSRRKMLREQWKIPKEQFKQ--AKLIADKQ 291
V ++ R + + + + K +A
Sbjct: 67 MSVLFSVLVTETTLENGLIQLRSRDT-TMKEMMHISKLRDFLVKYLASAS 115
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 24.6 bits (53), Expect = 8.9
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 172 CGEPTCKQLDFLPFQCDLCKNIYCKEHMNPVQHNCTEYKDNV 213
C +P + +C LC++ + + + N +
Sbjct: 17 CRQPYNVNHFMI--ECGLCQDWFHGSCVGIEEENAVDIDIYH 56
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I,
dispensable insert domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 72
Score = 24.0 bits (52), Expect = 9.8
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 271 REQWKIPKEQFKQAKLIADKQIEEKLSKAEIQTENRPLALKLRLMKLKSKAV 322
+EQ + K AK A + K K + L+ +LMKL+ +A
Sbjct: 15 KEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQAT 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.412
Gapped
Lambda K H
0.267 0.0549 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,519,581
Number of extensions: 72036
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 28
Length of query: 412
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 324
Effective length of database: 1,199,356
Effective search space: 388591344
Effective search space used: 388591344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)