Query psy16447
Match_columns 107
No_of_seqs 115 out of 1023
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 21:33:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16447.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16447hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 99.9 2.6E-26 5.7E-31 205.0 4.3 73 35-107 440-513 (1463)
2 cd01383 MYSc_type_VIII Myosin 99.9 5.5E-26 1.2E-30 194.2 5.1 73 35-107 377-449 (677)
3 cd01387 MYSc_type_XV Myosin mo 99.9 6.9E-26 1.5E-30 193.5 5.4 73 35-107 373-445 (677)
4 PTZ00014 myosin-A; Provisional 99.9 6.3E-26 1.4E-30 197.0 4.9 73 35-107 474-546 (821)
5 cd01382 MYSc_type_VI Myosin mo 99.9 7.8E-26 1.7E-30 194.2 5.0 73 35-107 409-481 (717)
6 cd01384 MYSc_type_XI Myosin mo 99.9 9.8E-26 2.1E-30 192.5 5.3 73 35-107 379-451 (674)
7 cd01381 MYSc_type_VII Myosin m 99.9 1.3E-25 2.7E-30 191.7 5.6 73 35-107 374-446 (671)
8 cd01385 MYSc_type_IX Myosin mo 99.9 1.2E-25 2.6E-30 192.4 5.2 73 35-107 388-461 (692)
9 cd01379 MYSc_type_III Myosin m 99.9 1.4E-25 3E-30 191.1 5.0 73 35-107 385-457 (653)
10 cd01378 MYSc_type_I Myosin mot 99.9 1.7E-25 3.6E-30 191.0 5.3 73 35-107 378-451 (674)
11 cd01377 MYSc_type_II Myosin mo 99.9 5.2E-25 1.1E-29 188.5 5.4 73 35-107 386-459 (693)
12 cd01380 MYSc_type_V Myosin mot 99.9 5E-25 1.1E-29 188.5 5.1 72 35-107 380-451 (691)
13 smart00242 MYSc Myosin. Large 99.9 1.1E-24 2.3E-29 186.0 5.1 73 35-107 381-453 (677)
14 cd00124 MYSc Myosin motor doma 99.9 2.9E-24 6.4E-29 183.2 5.1 73 35-107 374-446 (679)
15 PF00063 Myosin_head: Myosin h 99.9 1.7E-23 3.7E-28 177.8 4.9 72 36-107 377-449 (689)
16 cd01386 MYSc_type_XVIII Myosin 99.9 5.7E-23 1.2E-27 177.7 5.0 70 38-107 394-478 (767)
17 KOG0164|consensus 99.9 9E-23 1.9E-27 174.4 2.5 72 36-107 388-459 (1001)
18 KOG0161|consensus 99.8 6.6E-22 1.4E-26 181.8 2.3 71 36-107 461-532 (1930)
19 KOG0163|consensus 99.8 2.3E-21 5.1E-26 166.7 4.3 72 36-107 464-535 (1259)
20 KOG0162|consensus 99.8 4.3E-20 9.3E-25 158.5 2.1 72 35-106 395-467 (1106)
21 KOG0160|consensus 99.8 2.3E-19 5E-24 156.2 4.2 72 35-107 380-451 (862)
22 KOG4229|consensus 99.7 2.2E-17 4.8E-22 146.4 3.3 72 36-107 440-511 (1062)
23 COG2153 ElaA Predicted acyltra 28.2 21 0.00045 26.2 0.2 31 45-75 114-144 (155)
24 PF15216 TSLP: Thymic stromal 25.7 1.8E+02 0.004 20.5 4.5 54 51-104 9-68 (124)
25 KOG2518|consensus 25.7 1.1E+02 0.0023 26.8 4.0 54 40-105 117-171 (556)
26 PF04727 ELMO_CED12: ELMO/CED- 22.3 24 0.00052 25.0 -0.4 29 71-102 41-69 (170)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.92 E-value=2.6e-26 Score=205.02 Aligned_cols=73 Identities=53% Similarity=0.985 Sum_probs=70.2
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~-kP~GLLsLLDEEcr 107 (107)
=|+.|||||||||||||+||++|++|+|..||++|..|||+|.+|+|.||++|+|||+. .|.|||++|||||+
T Consensus 440 iFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~ 513 (1463)
T COG5022 440 IFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECV 513 (1463)
T ss_pred hhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhc
Confidence 48899999999999999999999999999999999999999999999999999999996 48899999999995
No 2
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.92 E-value=5.5e-26 Score=194.16 Aligned_cols=73 Identities=55% Similarity=0.993 Sum_probs=70.9
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
-|+.|||||||||||||+||++|++++|..|+++|..|||+|.+|+|.||++|||||+++|.|||+||||||+
T Consensus 377 ~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~ 449 (677)
T cd01383 377 SFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEEST 449 (677)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHc
Confidence 4788999999999999999999999999999999999999999999999999999999999999999999995
No 3
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.92 E-value=6.9e-26 Score=193.51 Aligned_cols=73 Identities=53% Similarity=0.864 Sum_probs=71.0
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
-|+.|||||||||||||+||++|++++|..++++|..|||+|.+++|.||++|+|||+++|.|||+||||||+
T Consensus 373 ~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~ 445 (677)
T cd01387 373 DLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCC 445 (677)
T ss_pred cCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhc
Confidence 4788999999999999999999999999999999999999999999999999999999999999999999995
No 4
>PTZ00014 myosin-A; Provisional
Probab=99.92 E-value=6.3e-26 Score=197.00 Aligned_cols=73 Identities=37% Similarity=0.536 Sum_probs=71.0
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
-|+.|||||||||||||+||++|++++|..|+++|..|||+|.+++|.||++|||||+++|.|||+||||||+
T Consensus 474 ~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~ 546 (821)
T PTZ00014 474 VFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCL 546 (821)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhC
Confidence 4788999999999999999999999999999999999999999999999999999999999999999999995
No 5
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.92 E-value=7.8e-26 Score=194.17 Aligned_cols=73 Identities=41% Similarity=0.802 Sum_probs=71.0
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
-|+.|||||||||||||+||++|++++|..|+++|..|||+|.+++|.||++|+|||+++|.|||+||||||+
T Consensus 409 ~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~ 481 (717)
T cd01382 409 YFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENR 481 (717)
T ss_pred cCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhc
Confidence 4778999999999999999999999999999999999999999999999999999999999999999999995
No 6
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.92 E-value=9.8e-26 Score=192.52 Aligned_cols=73 Identities=53% Similarity=0.867 Sum_probs=70.9
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
-|+.|||||||||||||+||++|++++|..|+++|..|||+|++++|.||++|+|||+++|.|||+||||||+
T Consensus 379 ~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~ 451 (674)
T cd01384 379 SFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACM 451 (674)
T ss_pred ccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHc
Confidence 4778999999999999999999999999999999999999999999999999999999999999999999995
No 7
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.92 E-value=1.3e-25 Score=191.74 Aligned_cols=73 Identities=51% Similarity=0.886 Sum_probs=70.8
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
-|+.|||||||||||||+||++|++++|..++++|..|||+|.+++|.||++|||||+++|.|||+||||||+
T Consensus 374 ~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~ 446 (671)
T cd01381 374 NFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESK 446 (671)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhc
Confidence 4778999999999999999999999999999999999999999999999999999999999999999999995
No 8
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.92 E-value=1.2e-25 Score=192.39 Aligned_cols=73 Identities=59% Similarity=1.091 Sum_probs=70.3
Q ss_pred hhcc-CcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 35 KKKK-RDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~-NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
-|+. |||||||||||||+||++|++++|..++++|..|||+|++|+|.||++|||||+++|.|||+||||||+
T Consensus 388 ~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~ 461 (692)
T cd01385 388 DFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESN 461 (692)
T ss_pred cCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhc
Confidence 3566 999999999999999999999999999999999999999999999999999999999999999999995
No 9
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.91 E-value=1.4e-25 Score=191.10 Aligned_cols=73 Identities=52% Similarity=0.902 Sum_probs=70.8
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
-|+.|||||||||||||+||++|++++|..|+++|..|||+|..++|.||++|+|||+.+|.|||+||||||+
T Consensus 385 ~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~ 457 (653)
T cd01379 385 NFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESR 457 (653)
T ss_pred cCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhc
Confidence 4788999999999999999999999999999999999999999999999999999999999999999999995
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.91 E-value=1.7e-25 Score=191.05 Aligned_cols=73 Identities=45% Similarity=0.837 Sum_probs=70.7
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~-kP~GLLsLLDEEcr 107 (107)
-|+.|||||||||||||+||++|++++|..++++|..|||+|.+++|.||++|+|||++ +|.|||+||||||+
T Consensus 378 ~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~ 451 (674)
T cd01378 378 IFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCA 451 (674)
T ss_pred ccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHc
Confidence 37789999999999999999999999999999999999999999999999999999999 89999999999995
No 11
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.91 E-value=5.2e-25 Score=188.49 Aligned_cols=73 Identities=48% Similarity=0.873 Sum_probs=70.3
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~-~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
-|+.|||||||||||||+||++|++++|..|+++|..|||+|++++| .||++|||||+++|.|||+||||||+
T Consensus 386 ~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~ 459 (693)
T cd01377 386 IFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECV 459 (693)
T ss_pred ccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhc
Confidence 47789999999999999999999999999999999999999999999 59999999999999999999999995
No 12
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.91 E-value=5e-25 Score=188.53 Aligned_cols=72 Identities=56% Similarity=0.980 Sum_probs=69.3
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
-|+.|||||||||||||+||++|++++|..|+++|..|||+|++++|.||++|+|||++ |.|||+||||||+
T Consensus 380 ~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~ 451 (691)
T cd01380 380 TFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECR 451 (691)
T ss_pred ccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhc
Confidence 47789999999999999999999999999999999999999999999999999999996 6999999999995
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.90 E-value=1.1e-24 Score=186.01 Aligned_cols=73 Identities=56% Similarity=1.029 Sum_probs=70.8
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
-|+.|||||||||||||+||++|++++|..++++|..|||+|++++|.||++|||||+++|.|||+||||||+
T Consensus 381 ~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~ 453 (677)
T smart00242 381 IFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECR 453 (677)
T ss_pred ccccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999995
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.89 E-value=2.9e-24 Score=183.23 Aligned_cols=73 Identities=58% Similarity=1.008 Sum_probs=70.7
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
-|+.|||||||||||||+||++|++++|..++++|..|||.|+.++|.||++|+|||+++|.|||+||||||+
T Consensus 374 ~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~ 446 (679)
T cd00124 374 IFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECL 446 (679)
T ss_pred cCCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhC
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999995
No 15
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.88 E-value=1.7e-23 Score=177.79 Aligned_cols=72 Identities=57% Similarity=1.041 Sum_probs=67.5
Q ss_pred hccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhcC
Q psy16447 36 KKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 36 ~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~-~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
+..|+|||||||||||+||++|++++|..++++|.+|||+|+.++| .||++|+|||+++|.|||+||||||+
T Consensus 377 ~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~ 449 (689)
T PF00063_consen 377 FSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECL 449 (689)
T ss_dssp -SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCT
T ss_pred ccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhh
Confidence 5789999999999999999999999999999999999999999999 99999999999999999999999995
No 16
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.87 E-value=5.7e-23 Score=177.66 Aligned_cols=70 Identities=34% Similarity=0.561 Sum_probs=65.2
Q ss_pred cCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcCC--------------Ccccccc
Q psy16447 38 KRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP--------------NGLLCVL 102 (107)
Q Consensus 38 ~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~-~dn~~~ldLI~~kP--------------~GLLsLL 102 (107)
.|||||||||||||+||++|++++|..|+++|..|||+|+.+.+ .||++|++||+.+| .|||+||
T Consensus 394 ~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lL 473 (767)
T cd01386 394 AATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLL 473 (767)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhh
Confidence 59999999999999999999999999999999999999987666 79999999999765 5999999
Q ss_pred hhhcC
Q psy16447 103 DDQAK 107 (107)
Q Consensus 103 DEEcr 107 (107)
||||+
T Consensus 474 DEec~ 478 (767)
T cd01386 474 DEEAL 478 (767)
T ss_pred hHhhc
Confidence 99995
No 17
>KOG0164|consensus
Probab=99.86 E-value=9e-23 Score=174.39 Aligned_cols=72 Identities=44% Similarity=0.815 Sum_probs=70.2
Q ss_pred hccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 36 KKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 36 ~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
|+.|||||||||||||+||++|++.++..||+||..|||+|.+|+|.+|..++||++.+..|||+||||||-
T Consensus 388 f~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl 459 (1001)
T KOG0164|consen 388 FQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACL 459 (1001)
T ss_pred ecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhc
Confidence 789999999999999999999999999999999999999999999999999999999988999999999993
No 18
>KOG0161|consensus
Probab=99.83 E-value=6.6e-22 Score=181.77 Aligned_cols=71 Identities=51% Similarity=0.926 Sum_probs=68.3
Q ss_pred hccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhcC
Q psy16447 36 KKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 36 ~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~-~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
|..||||||||||+||+||++|++++|..++++|..|||.|.+|+| .|.+||+|||+ +|+||||+|||||.
T Consensus 461 fe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIE-kp~Gi~slLdEEc~ 532 (1930)
T KOG0161|consen 461 FEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIE-KPMGILSLLDEECV 532 (1930)
T ss_pred cCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHh-chhhHHHHHHHHHh
Confidence 6779999999999999999999999999999999999999999999 89999999999 48899999999994
No 19
>KOG0163|consensus
Probab=99.83 E-value=2.3e-21 Score=166.74 Aligned_cols=72 Identities=49% Similarity=0.861 Sum_probs=70.3
Q ss_pred hccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 36 KKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 36 ~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
|.+|||||||||||||+||+||+++|+..+|+.|..||+.++.|.|.||++|++||+.+..|||+|||||++
T Consensus 464 f~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEak 535 (1259)
T KOG0163|consen 464 FAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAK 535 (1259)
T ss_pred eecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhcc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999975
No 20
>KOG0162|consensus
Probab=99.78 E-value=4.3e-20 Score=158.49 Aligned_cols=72 Identities=40% Similarity=0.769 Sum_probs=69.3
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCcccccchhhc
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQA 106 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~-kP~GLLsLLDEEc 106 (107)
=|+.||||||||||.||+||+.|++.++..||++|..|||.|.++.|.||.-++|||+. .|+|||++|||.|
T Consensus 395 IFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~ 467 (1106)
T KOG0162|consen 395 IFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVC 467 (1106)
T ss_pred ecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999986 7889999999988
No 21
>KOG0160|consensus
Probab=99.76 E-value=2.3e-19 Score=156.22 Aligned_cols=72 Identities=57% Similarity=0.959 Sum_probs=69.7
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
-|++|+|||||||||||+||+.|.+|+|..++++|..|+|+|..++|.||++|+++|+. |.|+++||||||.
T Consensus 380 sF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~ 451 (862)
T KOG0160|consen 380 SFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECM 451 (862)
T ss_pred ccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhcc
Confidence 47899999999999999999999999999999999999999999999999999999996 9999999999994
No 22
>KOG4229|consensus
Probab=99.67 E-value=2.2e-17 Score=146.42 Aligned_cols=72 Identities=56% Similarity=1.030 Sum_probs=69.7
Q ss_pred hccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 36 KKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 36 ~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
|+.|+|||+|||||||+||.+|.+++|..|+++|..|+|.|..+.|.||..|+|+|..+|+|||.+|||||+
T Consensus 440 f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~ 511 (1062)
T KOG4229|consen 440 FERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESR 511 (1062)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCc
Confidence 578999999999999999999999999999999999999999999999999999999999999999999984
No 23
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=28.21 E-value=21 Score=26.18 Aligned_cols=31 Identities=32% Similarity=0.414 Sum_probs=27.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhcCCc
Q psy16447 45 CINYANEHLQYYFNQHVFQYEQEEYNKEGIR 75 (107)
Q Consensus 45 cIN~aNErLq~~~~~~if~~e~eey~~EgI~ 75 (107)
+.--|.+.||.+|.+.-|....++|.++||+
T Consensus 114 v~l~AQahLq~fYa~~GFv~~~e~yledGIp 144 (155)
T COG2153 114 VYLGAQAHLQDFYASFGFVRVGEEYLEDGIP 144 (155)
T ss_pred eEEehHHHHHHHHHHhCcEEcCchhhcCCCC
Confidence 3345889999999999999999999999996
No 24
>PF15216 TSLP: Thymic stromal lymphopoietin
Probab=25.72 E-value=1.8e+02 Score=20.52 Aligned_cols=54 Identities=17% Similarity=0.318 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhh-cCCccccccc-CChHHHHHHHhc----CCCcccccchh
Q psy16447 51 EHLQYYFNQHVFQYEQEEYNK-EGIRWRHIEF-SDNTLCLQLVEG----KPNGLLCVLDD 104 (107)
Q Consensus 51 ErLq~~~~~~if~~e~eey~~-EgI~~~~v~~-~dn~~~ldLI~~----kP~GLLsLLDE 104 (107)
|+++.-|...||..-.+.... -...+..+.| .+.++||..|+. +.+|--||.+|
T Consensus 9 ~kI~k~Y~~~I~~~L~~ymngtkst~FN~~~~C~~r~~CLtkIe~~Tfnp~~gC~SLa~e 68 (124)
T PF15216_consen 9 EKIQKIYENIIFHDLLKYMNGTKSTEFNNTVYCEDRPDCLTKIERLTFNPTPGCPSLAKE 68 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcccccCccccCCchhHHHHHHHHhcCCCCCchhHHHH
Confidence 678888888888754433332 1234444444 677889877764 44677777665
No 25
>KOG2518|consensus
Probab=25.69 E-value=1.1e+02 Score=26.79 Aligned_cols=54 Identities=11% Similarity=0.275 Sum_probs=30.4
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhh
Q psy16447 40 DFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQ 105 (107)
Q Consensus 40 sfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~-~dn~~~ldLI~~kP~GLLsLLDEE 105 (107)
.+-|.||..+-|..+.++. ....+||+.-..+| .|-|-+ .|. +..+|=.||-|.
T Consensus 117 ~~fqr~VdIT~~ma~~lI~---------~~r~~nVe~IVAPyEADAQla--yL~-~~~~i~~IITED 171 (556)
T KOG2518|consen 117 ECFQRCVDITPEMAHKLIQ---------YLRSQNVEYIVAPYEADAQLA--YLE-REGIVDAIITED 171 (556)
T ss_pred HHHHHhccCcHHHHHHHHH---------HHHHcCCceEecCccccchhH--HHH-hcCcceEEEecc
Confidence 4558899998887776552 23445666655566 454433 233 234444555554
No 26
>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2. ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton
Probab=22.33 E-value=24 Score=24.97 Aligned_cols=29 Identities=17% Similarity=0.349 Sum_probs=21.1
Q ss_pred hcCCcccccccCChHHHHHHHhcCCCcccccc
Q psy16447 71 KEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 102 (107)
Q Consensus 71 ~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLL 102 (107)
..+-.|..+.|....|..|+= .+|+|+|.
T Consensus 41 ~~~~~W~~lGFQ~~dP~tDFR---~~G~LgL~ 69 (170)
T PF04727_consen 41 RISEHWKELGFQGEDPATDFR---GMGLLGLD 69 (170)
T ss_pred cCccHHHHhCCCCCCcHHHHh---hhhHHHHH
Confidence 334579999997777788873 46888875
Done!