Query psy16447
Match_columns 107
No_of_seqs 115 out of 1023
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 21:34:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16447.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16447hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lkx_A Myosin IE heavy chain; 99.9 9.3E-27 3.2E-31 198.1 4.1 73 35-107 392-464 (697)
2 2v26_A Myosin VI; calmodulin-b 99.9 1.1E-26 3.8E-31 199.7 4.5 73 35-107 458-530 (784)
3 4anj_A Unconventional myosin-V 99.9 1.8E-26 6E-31 203.1 4.0 73 35-107 462-534 (1052)
4 1w7j_A Myosin VA; motor protei 99.9 4.8E-26 1.7E-30 195.9 5.2 71 36-107 444-514 (795)
5 4db1_A Myosin-7; S1DC, cardiac 99.9 6.5E-26 2.2E-30 194.9 5.0 72 35-107 467-539 (783)
6 1w9i_A Myosin II heavy chain; 99.9 7.2E-26 2.5E-30 194.4 5.2 73 35-107 460-534 (770)
7 1kk8_A Myosin heavy chain, str 99.9 9.4E-26 3.2E-30 195.0 4.5 72 35-107 466-538 (837)
8 2dfs_A Myosin-5A; myosin-V, in 99.9 2.5E-25 8.6E-30 196.1 5.1 71 36-107 444-514 (1080)
9 2ycu_A Non muscle myosin 2C, a 99.9 3.4E-25 1.2E-29 194.0 5.0 72 36-107 440-514 (995)
10 1g8x_A Myosin II heavy chain f 99.9 5.5E-25 1.9E-29 193.0 5.4 72 36-107 461-534 (1010)
11 1i84_S Smooth muscle myosin he 99.9 5.7E-25 2E-29 194.2 4.2 72 36-107 471-545 (1184)
12 1y4m_A HERV-FRD_6P24.1 proviru 30.2 18 0.00062 21.1 1.0 26 82-107 24-49 (53)
13 1mof_A Moloney murine leukemia 25.3 24 0.00082 20.7 0.9 26 82-107 26-51 (55)
No 1
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=99.93 E-value=9.3e-27 Score=198.12 Aligned_cols=73 Identities=42% Similarity=0.710 Sum_probs=70.7
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
-|+.|||||||||||||+||++|++++|..|++||..|||+|.+++|.||++|+|||+++|+|||+||||||+
T Consensus 392 ~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~ 464 (697)
T 1lkx_A 392 VFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACL 464 (697)
T ss_dssp CCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhC
Confidence 3778999999999999999999999999999999999999999999999999999999999999999999994
No 2
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=99.93 E-value=1.1e-26 Score=199.65 Aligned_cols=73 Identities=40% Similarity=0.774 Sum_probs=70.6
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
-|+.|||||||||||||+||++|++++|..|++||..|||+|.+++|.||++|+|||+.+|+|||+||||||+
T Consensus 458 ~f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~ 530 (784)
T 2v26_A 458 YFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENR 530 (784)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhc
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999994
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.92 E-value=1.8e-26 Score=203.13 Aligned_cols=73 Identities=40% Similarity=0.774 Sum_probs=70.9
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
-|+.|||||||||||||+||++|++++|..|+++|..|||+|.+++|.||++|||||+++|+|||+||||||+
T Consensus 462 ~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~ 534 (1052)
T 4anj_A 462 YFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENR 534 (1052)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhc
Confidence 4788999999999999999999999999999999999999999999999999999999999999999999994
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.92 E-value=4.8e-26 Score=195.93 Aligned_cols=71 Identities=55% Similarity=0.908 Sum_probs=68.9
Q ss_pred hccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 36 KKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 36 ~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
|+.|||||||||||||+||++|++++|..||+||..|||+|.+++|.||++|||||+.+ +|||+||||||+
T Consensus 444 f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~ 514 (795)
T 1w7j_A 444 FEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECK 514 (795)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHT
T ss_pred cCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhcc
Confidence 67899999999999999999999999999999999999999999999999999999975 999999999995
No 5
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.92 E-value=6.5e-26 Score=194.92 Aligned_cols=72 Identities=47% Similarity=0.928 Sum_probs=67.9
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~-~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
-|+.|||||||||||||+||++|++++|..||++|..|||+|.+++| .||++|+|||+. |+|||+||||||+
T Consensus 467 ~f~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~ 539 (783)
T 4db1_A 467 IFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECM 539 (783)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TT
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhc
Confidence 37789999999999999999999999999999999999999999999 599999999995 8999999999995
No 6
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.92 E-value=7.2e-26 Score=194.37 Aligned_cols=73 Identities=51% Similarity=0.933 Sum_probs=69.6
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcC-CCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~-~dn~~~ldLI~~k-P~GLLsLLDEEcr 107 (107)
-|+.|||||||||||||+||++|++++|..|+++|..|||+|.+++| .||++|+|||+.+ |+|||+||||||+
T Consensus 460 ~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~ 534 (770)
T 1w9i_A 460 IFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSV 534 (770)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHS
T ss_pred ccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhC
Confidence 36789999999999999999999999999999999999999999999 5999999999974 9999999999995
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.91 E-value=9.4e-26 Score=194.96 Aligned_cols=72 Identities=50% Similarity=0.960 Sum_probs=69.0
Q ss_pred hhccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhcC
Q psy16447 35 KKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 35 ~~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~-~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
-|+.|||||||||||||+||++|++++|..|++||..|||+|.+++| .||++|+|||+. |+|||+||||||+
T Consensus 466 ~f~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~ 538 (837)
T 1kk8_A 466 IFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECM 538 (837)
T ss_dssp CCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTT
T ss_pred ccccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhc
Confidence 36789999999999999999999999999999999999999999999 599999999996 9999999999995
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.91 E-value=2.5e-25 Score=196.08 Aligned_cols=71 Identities=55% Similarity=0.908 Sum_probs=68.8
Q ss_pred hccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhcC
Q psy16447 36 KKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 36 ~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
|+.|||||||||||||+||++|++++|..|+++|..|||+|.+++|.||++|||||+.+ +|||+||||||+
T Consensus 444 f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~ 514 (1080)
T 2dfs_A 444 FEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECK 514 (1080)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTT
T ss_pred cCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-Cceeeecccccc
Confidence 67899999999999999999999999999999999999999999999999999999975 999999999995
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.91 E-value=3.4e-25 Score=193.97 Aligned_cols=72 Identities=49% Similarity=0.901 Sum_probs=69.2
Q ss_pred hccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhc--CCCcccccchhhcC
Q psy16447 36 KKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCVLDDQAK 107 (107)
Q Consensus 36 ~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~-~dn~~~ldLI~~--kP~GLLsLLDEEcr 107 (107)
|+.|||||||||||||+||++|++++|..|+++|..|||+|.+|+| .||++|||||+. +|+|||+||||||+
T Consensus 440 f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~ 514 (995)
T 2ycu_A 440 FQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECW 514 (995)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSS
T ss_pred cccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhc
Confidence 6789999999999999999999999999999999999999999999 699999999997 38999999999995
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.90 E-value=5.5e-25 Score=192.97 Aligned_cols=72 Identities=51% Similarity=0.945 Sum_probs=69.1
Q ss_pred hccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhc-CCCcccccchhhcC
Q psy16447 36 KKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVLDDQAK 107 (107)
Q Consensus 36 ~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~-~dn~~~ldLI~~-kP~GLLsLLDEEcr 107 (107)
|+.|||||||||||||+||++|++++|..|+++|..|||+|.+++| .||++|||||+. +|+|||+||||||+
T Consensus 461 f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~ 534 (1010)
T 1g8x_A 461 FKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSV 534 (1010)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTT
T ss_pred CCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhC
Confidence 6789999999999999999999999999999999999999999999 599999999997 49999999999995
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.90 E-value=5.7e-25 Score=194.22 Aligned_cols=72 Identities=49% Similarity=0.899 Sum_probs=67.8
Q ss_pred hccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcC--CCcccccchhhcC
Q psy16447 36 KKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLLCVLDDQAK 107 (107)
Q Consensus 36 ~~~NsfeQLcIN~aNErLq~~~~~~if~~e~eey~~EgI~~~~v~~-~dn~~~ldLI~~k--P~GLLsLLDEEcr 107 (107)
|..|||||||||||||+||++|++++|..++++|..|||+|.+|+| .||++|||||+.+ |+|||+||||||+
T Consensus 471 f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~ 545 (1184)
T 1i84_S 471 FEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECW 545 (1184)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTS
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhC
Confidence 7789999999999999999999999999999999999999999999 6999999999962 3499999999995
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=30.25 E-value=18 Score=21.08 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.0
Q ss_pred CChHHHHHHHhcCCCcccccchhhcC
Q psy16447 82 SDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 82 ~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
..|.-.+|++.....|+=..|.|+|.
T Consensus 24 lQNRraLDlL~a~~GG~C~~l~e~CC 49 (53)
T 1y4m_A 24 LQNRRGLDMLTAAQGGICLALDEKCC 49 (53)
T ss_dssp HHHHHHHHHHTGGGTSHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHhCCccHHhcCchh
Confidence 35788999998888899999999984
No 13
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=25.26 E-value=24 Score=20.72 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=21.9
Q ss_pred CChHHHHHHHhcCCCcccccchhhcC
Q psy16447 82 SDNTLCLQLVEGKPNGLLCVLDDQAK 107 (107)
Q Consensus 82 ~dn~~~ldLI~~kP~GLLsLLDEEcr 107 (107)
..|.-.+|+|.....|+=..|.|+|.
T Consensus 26 lQNRraLD~L~a~~GG~C~~l~e~CC 51 (55)
T 1mof_A 26 LQNRRGLDLLFLKEGGLCAALKEECA 51 (55)
T ss_dssp HHHHHHHHHHTGGGTCHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHhCCccHHHcCchh
Confidence 35788999998888899999999883
Done!