RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16447
(107 letters)
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 116 bits (291), Expect = 1e-31
Identities = 43/66 (65%), Positives = 53/66 (80%)
Query: 41 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 100
FEQLCINYANE LQYYFNQH+F+ EQEEY EGI W +IE++DN C+QL KP GLL
Sbjct: 395 FEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLY 454
Query: 101 VLDDQA 106
+LD+++
Sbjct: 455 LLDEES 460
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 115 bits (290), Expect = 2e-31
Identities = 41/67 (61%), Positives = 52/67 (77%)
Query: 41 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 100
FEQLCINYANE LQ +FNQHVF+ EQEEY +EGI W I+F DN C+ L+E KP G+L
Sbjct: 387 FEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILS 446
Query: 101 VLDDQAK 107
+LD++ +
Sbjct: 447 LLDEECR 453
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 108 bits (272), Expect = 6e-29
Identities = 42/69 (60%), Positives = 53/69 (76%)
Query: 37 KKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 96
+K FEQLCINYANE LQ +FNQHVF+ EQEEY +EGI W I+F+DN + L+E KP
Sbjct: 376 EKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPG 435
Query: 97 GLLCVLDDQ 105
GLL +LD++
Sbjct: 436 GLLSLLDEE 444
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 105 bits (264), Expect = 6e-28
Identities = 39/68 (57%), Positives = 47/68 (69%)
Query: 37 KKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 96
K FEQ CIN NE LQ +FNQHVF+ EQEEY KE I W +IEF DN L L+E KP
Sbjct: 381 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPG 440
Query: 97 GLLCVLDD 104
G++ +LD+
Sbjct: 441 GIIALLDE 448
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 103 bits (258), Expect = 4e-27
Identities = 37/71 (52%), Positives = 51/71 (71%)
Query: 37 KKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 96
FEQLCIN+ANE+LQ +F QH+F+ EQEEYN E I W+HIEF DN L L+ KP
Sbjct: 376 DVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPL 435
Query: 97 GLLCVLDDQAK 107
++ ++D+++K
Sbjct: 436 NIMSLIDEESK 446
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 102 bits (256), Expect = 8e-27
Identities = 38/68 (55%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 41 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 99
FEQLCINYANE LQ +FN H+F+ EQEEY +EGI W I++ DN C+ L+E KP G+L
Sbjct: 381 FEQLCINYANEKLQQFFNHHMFKLEQEEYVREGIAWTFIDYGLDNQACIDLIEKKPPGIL 440
Query: 100 CVLDDQAK 107
+LD++ +
Sbjct: 441 SLLDEECR 448
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 101 bits (253), Expect = 2e-26
Identities = 41/71 (57%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 37 KKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 96
+K FEQ CINYANE LQ FNQHVF+ EQEEY KEGI W I+F DN C+ L+E K
Sbjct: 382 EKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESKL- 440
Query: 97 GLLCVLDDQAK 107
G+L +LD++ +
Sbjct: 441 GILSLLDEECR 451
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 98.9 bits (246), Expect = 2e-25
Identities = 39/65 (60%), Positives = 48/65 (73%)
Query: 41 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 100
FEQLCINYANE+LQY FN+ VFQ EQEEY +E + W I F+DN + L+ KP G+L
Sbjct: 379 FEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILR 438
Query: 101 VLDDQ 105
+LDDQ
Sbjct: 439 ILDDQ 443
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 95.3 bits (237), Expect = 3e-24
Identities = 40/70 (57%), Positives = 51/70 (72%)
Query: 37 KKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 96
K FEQ CINYANE LQ +FN+H+F+ EQEEY ++GI W +EF DN CL L E KP
Sbjct: 379 DKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPL 438
Query: 97 GLLCVLDDQA 106
GLL +LD+++
Sbjct: 439 GLLSLLDEES 448
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 89.9 bits (223), Expect = 2e-22
Identities = 38/71 (53%), Positives = 51/71 (71%)
Query: 37 KKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 96
KK FEQLCIN ANE +QYYFNQH+F +EQ+EY EG+ R +E+ DN L + KP
Sbjct: 387 KKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPL 446
Query: 97 GLLCVLDDQAK 107
GLL +LD++++
Sbjct: 447 GLLALLDEESR 457
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 85.9 bits (213), Expect = 5e-21
Identities = 40/71 (56%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 37 KKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-P 95
+K FEQLCINY NE LQ +FNQH+F+ EQEEY KEGI W I++ DN C+ L+E K P
Sbjct: 442 EKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNP 501
Query: 96 NGLLCVLDDQA 106
G+L +LD++
Sbjct: 502 LGILSLLDEEC 512
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 83.8 bits (208), Expect = 3e-20
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 41 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 99
FEQLCINY NE LQ +FN H+F EQEEY +EGI W I+F D + L+E P G+L
Sbjct: 392 FEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGIL 451
Query: 100 CVLDDQ 105
+LD++
Sbjct: 452 SLLDEE 457
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 83.8 bits (208), Expect = 3e-20
Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 41 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGLL 99
FEQ CINY NE LQ F + + EQEEY +EGI+W IE+ +N + L+EGK P G+
Sbjct: 384 FEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIF 443
Query: 100 CVLDD 104
+LDD
Sbjct: 444 SILDD 448
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 79.1 bits (195), Expect = 1e-18
Identities = 30/67 (44%), Positives = 45/67 (67%)
Query: 41 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 100
FEQ CINY NE LQ +FN+ + + EQE Y +EG+ + + DN C+ L+E K NG+L
Sbjct: 415 FEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILD 474
Query: 101 VLDDQAK 107
+LD++ +
Sbjct: 475 ILDEENR 481
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 54.7 bits (132), Expect = 4e-10
Identities = 27/69 (39%), Positives = 37/69 (53%)
Query: 37 KKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 96
K EQL IN NE LQ F VF+ E + Y EGI +E++ N + L+ GK
Sbjct: 476 KNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGK 535
Query: 97 GLLCVLDDQ 105
+L +L+DQ
Sbjct: 536 SVLSILEDQ 544
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 45.3 bits (108), Expect = 9e-07
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
R +KK+K+K+K K KK+ + K KR
Sbjct: 399 RAEKKEKEKEKPKVKKRHRDTKNIGKR 425
Score = 43.0 bits (102), Expect = 5e-06
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ + K KK K+ +KK+K+K+K K KKR
Sbjct: 385 EKKTGKPSKKVLAKRAEKKEKEKEKPKVKKR 415
Score = 43.0 bits (102), Expect = 5e-06
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+KK+K+K+K K KK+ + K K+R
Sbjct: 400 AEKKEKEKEKPKVKKRHRDTKNIGKRR 426
Score = 43.0 bits (102), Expect = 6e-06
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
KK K+ +KK+K+K+K K KK+ RD
Sbjct: 392 SKKVLAKRAEKKEKEKEKPKVKKRHRD 418
Score = 41.1 bits (97), Expect = 2e-05
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
+K+K+K+K K KK+ + K K++K
Sbjct: 402 KKEKEKEKPKVKKRHRDTKNIGKRRK 427
Score = 41.1 bits (97), Expect = 2e-05
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
K+ +KK+K+K+K K KK+ + K
Sbjct: 396 LAKRAEKKEKEKEKPKVKKRHRDTKN 421
Score = 41.1 bits (97), Expect = 3e-05
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
KK+K+K+K K KK+ + K K+++
Sbjct: 402 KKEKEKEKPKVKKRHRDTKNIGKRRK 427
Score = 40.7 bits (96), Expect = 3e-05
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
S+K K+ +KK+K+K+K K KK+ +
Sbjct: 392 SKKVLAKRAEKKEKEKEKPKVKKRHRDT 419
Score = 40.7 bits (96), Expect = 3e-05
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
S KK K KK K+ +KK+K+K+K +
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKEKEKPK 411
Score = 40.7 bits (96), Expect = 3e-05
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
G KK K+ +KK+K+K+K K KK+ +
Sbjct: 389 GKPSKKVLAKRAEKKEKEKEKPKVKKRHR 417
Score = 39.5 bits (93), Expect = 8e-05
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
T + KK K+ +KK+K+K+K K KK+
Sbjct: 388 TGKPSKKVLAKRAEKKEKEKEKPKVKKRH 416
Score = 39.5 bits (93), Expect = 8e-05
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
++K+K+K K KK+ + K K++K
Sbjct: 403 KEKEKEKPKVKKRHRDTKNIGKRRKP 428
Score = 39.2 bits (92), Expect = 1e-04
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
G + + K+ +KK+K+K+K K KK+ + +
Sbjct: 388 TGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTK 420
Score = 38.8 bits (91), Expect = 1e-04
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKK 38
K+K+K K KK+ + K K++K
Sbjct: 405 KEKEKPKVKKRHRDTKNIGKRRKPS 429
Score = 38.0 bits (89), Expect = 3e-04
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K KK K+ +KK+K+K+K K +
Sbjct: 388 TGKPSKKVLAKRAEKKEKEKEKPKVKK 414
Score = 37.6 bits (88), Expect = 3e-04
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
++K+K K KK+ + K K++K
Sbjct: 405 KEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 36.5 bits (85), Expect = 0.001
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K+K K KK+ + K K++K +
Sbjct: 407 KEKPKVKKRHRDTKNIGKRRKPSGTSE 433
Score = 34.9 bits (81), Expect = 0.004
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKK 37
++K K KK+ + K K++K
Sbjct: 406 EKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 34.1 bits (79), Expect = 0.006
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
++ +KK K KK K+ +KK+K+++
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKE 408
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 41.4 bits (97), Expect = 2e-05
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 41 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 100
FE+LC NY E LQ F+ F E Y +EG+ +EF L E P +
Sbjct: 397 FEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVE---VEFD-------LAEPSPGTTVA 446
Query: 101 VLD 103
++D
Sbjct: 447 LVD 449
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 41.1 bits (97), Expect = 2e-05
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+K+++KK +K+KKKKK+KKK KK+KK+
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKKRKKKG 412
Score = 40.3 bits (95), Expect = 4e-05
Identities = 16/28 (57%), Positives = 25/28 (89%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+KK+++KK +K+KKKKK+KKK KK+K+
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKK 411
Score = 40.0 bits (94), Expect = 6e-05
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
++++KK +K+KKKKK+KKK KK+KKK
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGR 413
Score = 38.8 bits (91), Expect = 2e-04
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
KK +K+KKKKK+KKK KK+KKK +K
Sbjct: 389 EKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 38.8 bits (91), Expect = 2e-04
Identities = 16/26 (61%), Positives = 23/26 (88%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
+KK +K+KKKKK+KKK KK+KKK ++
Sbjct: 389 EKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 38.4 bits (90), Expect = 2e-04
Identities = 17/26 (65%), Positives = 23/26 (88%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
KKK+++KK +K+KKKKK+KKK KKR
Sbjct: 383 PKKKREEKKPQKRKKKKKRKKKGKKR 408
Score = 36.1 bits (84), Expect = 0.001
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
K KKK+++KK +K+KKKKK+KKK +
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKKKGK 406
Score = 33.4 bits (77), Expect = 0.013
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K+K K KKK+++KK +K+KKKKKR
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRK 402
Score = 33.0 bits (76), Expect = 0.018
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDF 41
++K K KKK+++KK +K+KKKKK++
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKK 404
Score = 26.9 bits (60), Expect = 2.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 9 DGTSRKKKKKKKKKKKKKKKK 29
+KK+KKK KK+KKK +K
Sbjct: 394 KRKKKKKRKKKGKKRKKKGRK 414
Score = 25.7 bits (57), Expect = 6.5
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
K+ ++ K+K K KKK+++KK +KR ++
Sbjct: 369 NKRIEEIKEKYPKPPKKKREEKKPQKRKKKK 399
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 37.1 bits (86), Expect = 4e-04
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
G +K KKKK + K++KKKKK+KKKKKKR
Sbjct: 138 KGHEKKHKKKKHEDDKERKKKKKEKKKKKKR 168
Score = 36.0 bits (83), Expect = 0.001
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
G KK KKKK + K++KKKKK+KKKKK+
Sbjct: 136 GLKGHEKKHKKKKHEDDKERKKKKKEKKKKKK 167
Score = 30.6 bits (69), Expect = 0.11
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ +KK KKKK + K++KKKKK+KK+
Sbjct: 134 SEGLKGHEKKHKKKKHEDDKERKKKKKEKKK 164
Score = 29.8 bits (67), Expect = 0.17
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
D K +KK KKKK + K++KKKKK+K+ ++
Sbjct: 133 DSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKK 167
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 36.4 bits (85), Expect = 6e-04
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDF 41
K +KK +K K K +KKK KK++ K R F
Sbjct: 72 EKAEKKAEKAKAKAEKKKAKKEEPKPRLF 100
Score = 33.3 bits (77), Expect = 0.009
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
+K +KK +K K K +KKK KK++ K
Sbjct: 71 WEKAEKKAEKAKAKAEKKKAKKEEPK 96
Score = 33.3 bits (77), Expect = 0.009
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
KK+ K +K +KK +K K K +KKK E+
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEE 94
Score = 33.3 bits (77), Expect = 0.010
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
+K+ K +K +KK +K K K +KKK + E
Sbjct: 64 DKKELKAWEKAEKKAEKAKAKAEKKKAKKEEP 95
Score = 33.3 bits (77), Expect = 0.010
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCI 46
K +K +KK +K K K +KKK K++ + +
Sbjct: 68 LKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRL 99
Score = 30.6 bits (70), Expect = 0.075
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKK 36
+ KK +K K K +KKK KK++ K +
Sbjct: 74 AEKKAEKAKAKAEKKKAKKEEPKPR 98
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase;
Provisional.
Length = 330
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDF 41
K K +KKK+K++ K K K K R F
Sbjct: 66 LKAWHKAQKKKEKQEAKAAKAKSKPRLF 93
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
D K K +KKK+K++ K K K K +
Sbjct: 62 DKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 34.0 bits (79), Expect = 0.006
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
KK+ K K +KKK+K++ K K K
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSK 89
Score = 33.3 bits (77), Expect = 0.012
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+K+ K K +KKK+K++ K K K +
Sbjct: 62 DKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Score = 31.7 bits (73), Expect = 0.044
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 16 KKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
KK+ K K +KKK+K++ K K +
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKP 90
Score = 30.6 bits (70), Expect = 0.11
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 17 KKKKKKKKKKKKKKKKKKKKKKRDFEQLCI 46
KK+ K K +KKK+K++ K + + +
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKPRL 92
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 35.2 bits (82), Expect = 0.003
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
D ++ KK K +K K++ +K
Sbjct: 825 ADAPAKDPAGKKAAVKFSRKTKQQYVASEKD 855
Score = 33.6 bits (78), Expect = 0.010
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K KK K +K K++ ++D
Sbjct: 829 AKDPAGKKAAVKFSRKTKQQYVASEKD 855
Score = 33.2 bits (77), Expect = 0.012
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKK 38
KK K +K K++ +K K
Sbjct: 833 AGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 33.2 bits (77), Expect = 0.012
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKK 38
KK K +K K++ +K K
Sbjct: 834 GKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 32.8 bits (76), Expect = 0.018
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKK 36
D +K K +K K++ +K K
Sbjct: 831 DPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 32.8 bits (76), Expect = 0.022
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 2 FANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ K KK K +K K++
Sbjct: 813 LLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQY 849
Score = 32.5 bits (75), Expect = 0.030
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ K KK K +K K+
Sbjct: 822 RYLADAPAKDPAGKKAAVKFSRKTKQ 847
Score = 32.1 bits (74), Expect = 0.040
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
KK K +K K++ +K +
Sbjct: 832 PAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 31.7 bits (73), Expect = 0.051
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ +K + K KK K R
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSR 843
Score = 30.9 bits (71), Expect = 0.087
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
+K + K KK K ++ +Q
Sbjct: 819 EKLRYLADAPAKDPAGKKAAVKFSRKTKQQ 848
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 34.9 bits (81), Expect = 0.003
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
G + KK KK +K +KK++++KK+KKKK
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFA 436
Score = 33.4 bits (77), Expect = 0.012
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
T KK KK KK +K +KK++++KK+K+
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKK 432
Score = 32.6 bits (75), Expect = 0.025
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
KK KK +K +KK++++KK+KKKK
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAG 437
Score = 32.2 bits (74), Expect = 0.030
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
R+++KK+KKKK KKK+++++++K E
Sbjct: 423 REEEKKEKKKKAFAGKKKEEEEEEEKEKKE 452
Score = 32.2 bits (74), Expect = 0.031
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
G+ + KK KK +K +KK++++KK+KKK+ F
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFA 436
Score = 32.2 bits (74), Expect = 0.032
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K +KK++++KK+KKKK KKK++ +
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEE 444
Score = 31.4 bits (72), Expect = 0.063
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+K +KK++++KK+KKKK KKK +
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEE 442
Score = 31.0 bits (71), Expect = 0.086
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
+ +KK++++KK+KKKK KKK+++ + E
Sbjct: 418 KAEKKREEEKKEKKKKAFAGKKKEEEEEEE 447
Score = 31.0 bits (71), Expect = 0.087
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ +K +KK++++KK+KKKK KK++
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFAGKKKE 441
Score = 30.7 bits (70), Expect = 0.093
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+K +KK++++KK+KKKK KKK+ +
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEE 443
Score = 29.9 bits (68), Expect = 0.18
Identities = 10/28 (35%), Positives = 22/28 (78%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+K++++KK+KKKK KKK++++++
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEK 448
Score = 29.9 bits (68), Expect = 0.23
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
+K+KKKK KKK+++++++K+KK+ + E+
Sbjct: 425 EEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEE 457
Score = 28.3 bits (64), Expect = 0.60
Identities = 11/30 (36%), Positives = 23/30 (76%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
++KK+KKKK KKK+++++++K++ E
Sbjct: 424 EEEKKEKKKKAFAGKKKEEEEEEEKEKKEE 453
Score = 28.3 bits (64), Expect = 0.66
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ + KKKK KKK+++++++K+KK+++++
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKE 456
Score = 27.2 bits (61), Expect = 1.8
Identities = 11/30 (36%), Positives = 24/30 (80%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
+KKK KKK+++++++K+KK+++K + E
Sbjct: 430 KKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459
Score = 27.2 bits (61), Expect = 2.0
Identities = 9/30 (30%), Positives = 23/30 (76%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+KK KKK+++++++K+KK+++K+ +
Sbjct: 429 EKKKKAFAGKKKEEEEEEEKEKKEEEKEEE 458
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 34.7 bits (80), Expect = 0.005
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
D R +KK K K KK +K KK K ++
Sbjct: 766 DSAFRGEKKAKPKAAKKDARKAKKPSAKTQK 796
Score = 30.9 bits (70), Expect = 0.091
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKK-------KKKKKKRDFE 42
R K KK +K KK K +K K+ KK+ E
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 29.3 bits (66), Expect = 0.32
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 2 FANLRNGDGTSRKKKKKKKKKKKKKKKK-----KKKKKKKKKRD 40
F + + KK +K KK K +K K K+ KKK
Sbjct: 769 FRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 25.9 bits (57), Expect = 5.6
Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 25/58 (43%)
Query: 6 RNGDGTSRKKKKK-------------------------KKKKKKKKKKKKKKKKKKKK 38
RN T+R+K KK + +KK K K KK +K KK
Sbjct: 732 RNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKK 789
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 34.7 bits (79), Expect = 0.005
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
+K KK KKK+KK+K+K++ K KKK+ F+ L
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSL 228
Score = 32.0 bits (72), Expect = 0.036
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
GD + +KK KK KKK+KK+K+K++ K KKK
Sbjct: 189 KGDVPAVEKKSKKPKKKEKKEKEKERDKDKKK 220
Score = 31.2 bits (70), Expect = 0.077
Identities = 8/28 (28%), Positives = 21/28 (75%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
R +++ +K K++KKK++K+K+ +++
Sbjct: 89 RHRQRLEKDKREKKKREKEKRGRRRHHS 116
Score = 29.6 bits (66), Expect = 0.24
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ T + K KKKK++K+K++KKKKKK R
Sbjct: 272 EETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 29.3 bits (65), Expect = 0.36
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
++ + KK K KKKK++K+K++KKKKKK
Sbjct: 267 KDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHH 300
Score = 28.5 bits (63), Expect = 0.57
Identities = 8/27 (29%), Positives = 22/27 (81%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
R+ +++ +K K++KKK++K+K+ +++
Sbjct: 88 RRHRQRLEKDKREKKKREKEKRGRRRH 114
Score = 28.5 bits (63), Expect = 0.71
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
D + + KK K KKKK++K+K++KKKKKK
Sbjct: 265 EPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKH 298
Score = 28.1 bits (62), Expect = 0.78
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 37
S K KKKK++K+K++KKKKKK +
Sbjct: 271 AEETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 28.1 bits (62), Expect = 0.79
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDF 41
KKK+KK+K+K++ K KKK+ + K
Sbjct: 203 KKKEKKEKEKERDKDKKKEVEGFKSLLL 230
Score = 27.3 bits (60), Expect = 1.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
KKKK++K+K++KKKKKK + D
Sbjct: 279 KHKKKKQRKEKEEKKKKKKHHHHRCHHSD 307
Score = 27.3 bits (60), Expect = 1.7
Identities = 8/26 (30%), Positives = 22/26 (84%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
+++ +++ +K K++KKK++K+K+ +R
Sbjct: 87 ERRHRQRLEKDKREKKKREKEKRGRR 112
Score = 27.3 bits (60), Expect = 1.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANE 51
+ +KK++K+K++KKKKKK + EQ N A E
Sbjct: 275 KKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQPVQNGAVE 320
Score = 26.2 bits (57), Expect = 4.5
Identities = 8/26 (30%), Positives = 22/26 (84%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
++++ +++ +K K++KKK++K+K+ R
Sbjct: 86 EERRHRQRLEKDKREKKKREKEKRGR 111
Score = 26.2 bits (57), Expect = 4.6
Identities = 8/25 (32%), Positives = 22/25 (88%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKKR 39
+++++ +++ +K K++KKK++K+KR
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKR 109
Score = 26.2 bits (57), Expect = 4.8
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
RN + + +K +KK KK KKK+KK+K+++ ++
Sbjct: 179 RNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDK 216
Score = 25.8 bits (56), Expect = 5.2
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLC 45
++ KK K KKKK++K+K++KKKKK+ C
Sbjct: 271 AEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRC 303
Score = 25.4 bits (55), Expect = 7.6
Identities = 7/25 (28%), Positives = 22/25 (88%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKK 38
+++++ +++ +K K++KKK++K+K+
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKR 109
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 33.7 bits (77), Expect = 0.011
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKK 35
SRKKKKKKK K+KKKKK ++ K+
Sbjct: 683 SRKKKKKKKSKEKKKKKNREASKQ 706
Score = 31.0 bits (70), Expect = 0.078
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
+KKKKKKK K+KKKKK ++ K+ E +
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASKQIHALENI 713
Score = 30.2 bits (68), Expect = 0.19
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKK 34
G+ +KKKKKK K+KKKKK ++ K+
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASKQ 706
Score = 28.3 bits (63), Expect = 0.73
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 24 KKKKKKKKKKKKKKKRDFEQLCINYANEHLQ 54
+KKKKKKK K+KKKK++ E +A E+++
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQIHALENIE 714
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 32.5 bits (74), Expect = 0.011
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
D +K KKKKKK KK KK KK KK
Sbjct: 89 PDDHPPEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 30.6 bits (69), Expect = 0.066
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 19 KKKKKKKKKKKKKKKKKKKKRD 40
K KKKKKK KK KK KK K+D
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 25.2 bits (55), Expect = 6.0
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKK 29
+KK KK KK KK KK
Sbjct: 97 TEKPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 33.4 bits (77), Expect = 0.012
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
N RKK +KK++K +KK +K++ +K K+ E
Sbjct: 401 GENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEA 441
Score = 31.1 bits (71), Expect = 0.090
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
RKK++K +KK +K++ +K KKK +
Sbjct: 415 RKKQRKAEKKAEKEEAEKAAAKKKAEAA 442
Score = 29.1 bits (66), Expect = 0.33
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 4 NLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
NG+ + ++KK +KK++K +KK +K++ +K
Sbjct: 400 EGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAA 434
Score = 26.8 bits (60), Expect = 2.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
RK +KK +K++ +K KKK + K
Sbjct: 419 RKAEKKAEKEEAEKAAAKKKAEAAAK 444
Score = 25.3 bits (56), Expect = 7.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+K KKK + KK K + KK D
Sbjct: 431 EKAAAKKKAEAAAKKAKGPDGETKKVD 457
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 32.5 bits (74), Expect = 0.023
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 16 KKKKKKKKKKKKKKKKKKKKKKKRD 40
KKKK K KK K K KK + KKK R+
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKARE 115
Score = 31.7 bits (72), Expect = 0.042
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 17 KKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANE 51
KKKK K KK K K KK + KKK +Y E
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREGWNNFSYFPE 125
Score = 31.0 bits (70), Expect = 0.065
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
T+ +KKKK K KK K K KK + KKK +
Sbjct: 87 TAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 25.2 bits (55), Expect = 6.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
R+K +KKKK K KK K K KK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDE 108
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 32.3 bits (74), Expect = 0.031
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDF 41
A + KKKK K+ K K KK K KK F
Sbjct: 248 AEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKKIDSF 286
Score = 30.8 bits (70), Expect = 0.092
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ KK+K K++ KKKK K+ K K KK
Sbjct: 247 RAEKKRKSKEEIKKKKPKESKGVKALKKVV 276
Score = 29.6 bits (67), Expect = 0.21
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
SR +KK+K K++ KKKK K+ K K
Sbjct: 246 SRAEKKRKSKEEIKKKKPKESKGVKAL 272
Score = 26.5 bits (59), Expect = 2.9
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ + + +KK+K K++ KKKK K+ K +
Sbjct: 243 AAESRAEKKRKSKEEIKKKKPKESKGVKA 271
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 32.4 bits (74), Expect = 0.031
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
R KK++ + ++KKK+KK K +++ ++
Sbjct: 368 RDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 32.0 bits (73), Expect = 0.040
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
K K ++ KK++ + ++KKK+KK K + L
Sbjct: 363 KAKPERDKKERPGRYRRKKKEKKAKSERRGL 393
Score = 30.8 bits (70), Expect = 0.10
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 5 LRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
L+ K K ++ KK++ + ++KKK+KK +
Sbjct: 353 LKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAK 387
Score = 30.1 bits (68), Expect = 0.15
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
T K ++ KK++ + ++KKK+KK K +R
Sbjct: 362 TKAKPERDKKERPGRYRRKKKEKKAKSER 390
Score = 29.3 bits (66), Expect = 0.34
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ K K ++ KK++ + ++KKK+K+
Sbjct: 358 PKPPTKAKPERDKKERPGRYRRKKKEKKA 386
Score = 28.9 bits (65), Expect = 0.45
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K K ++ KK++ + ++KKK+KK
Sbjct: 361 PTKAKPERDKKERPGRYRRKKKEKKAK 387
Score = 28.1 bits (63), Expect = 0.78
Identities = 9/27 (33%), Positives = 20/27 (74%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ ++ KK++ + ++KKK+KK K ++R
Sbjct: 365 KPERDKKERPGRYRRKKKEKKAKSERR 391
Score = 27.0 bits (60), Expect = 2.2
Identities = 7/27 (25%), Positives = 18/27 (66%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+K++ + ++KKK+KK K +++ +
Sbjct: 369 DKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 26.6 bits (59), Expect = 3.2
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K K K K ++ KK++ + ++K+
Sbjct: 354 KEKPPKPPTKAKPERDKKERPGRYRRKKK 382
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 32.0 bits (73), Expect = 0.036
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
++KK KK+K + K KKKKKKKKKK
Sbjct: 164 KKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 30.8 bits (70), Expect = 0.087
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ + KK+KK KK+K + K KKKKKKKK+
Sbjct: 159 KKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 30.1 bits (68), Expect = 0.14
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
++KK+KKKKK+ KK+KK+KK KK+K
Sbjct: 149 VEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEP 180
Score = 28.5 bits (64), Expect = 0.49
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
++++KK+KKKKK+ KK+KK+KK K++
Sbjct: 149 VEEEEKKEKKKKKEVKKEKKEKKDKKEKMV 178
Score = 28.5 bits (64), Expect = 0.57
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
KK+KKKKK+ KK+KK+KK KK+K
Sbjct: 154 KKEKKKKKEVKKEKKEKKDKKEKMVEPKG 182
Score = 28.1 bits (63), Expect = 0.65
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+++KK+KKKKK+ KK+KK+KK KK++
Sbjct: 148 EVEEEEKKEKKKKKEVKKEKKEKKDKKEKM 177
Score = 27.0 bits (60), Expect = 1.9
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ ++++KK+KKKKK+ KK+KK+KK +
Sbjct: 144 EKEAEVEEEEKKEKKKKKEVKKEKKEKKDKK 174
Score = 25.4 bits (56), Expect = 5.2
Identities = 12/30 (40%), Positives = 26/30 (86%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
T++ +K+ + ++++KK+KKKKK+ KK+K++
Sbjct: 140 TAKVEKEAEVEEEEKKEKKKKKEVKKEKKE 169
Score = 25.4 bits (56), Expect = 6.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K +K+ + ++++KK+KKKKK+ K++
Sbjct: 133 ETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKE 166
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 31.6 bits (72), Expect = 0.036
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ K+KK+KKKKKKKKKKK KK KK+
Sbjct: 107 EKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 31.2 bits (71), Expect = 0.047
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+++KK+KKKKKKKKKKK KK KKKK
Sbjct: 108 KAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.4 bits (69), Expect = 0.090
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKK 38
K+K K+KK+KKKKKKKKKKK KK
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKA 130
Score = 30.0 bits (68), Expect = 0.11
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K+K K+KK+KKKKKKKKKKK KK
Sbjct: 105 LKEKAKQKKQKKKKKKKKKKKTSKKAA 131
Score = 29.7 bits (67), Expect = 0.15
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ K+K K+KK+KKKKKKKKKKK K+
Sbjct: 103 QVLKEKAKQKKQKKKKKKKKKKKTSKKA 130
Score = 28.9 bits (65), Expect = 0.29
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
++ K+K K+KK+KKKKKKKKKKK +
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKK 129
>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to
196 amino acids in length.
Length = 149
Score = 31.1 bits (71), Expect = 0.045
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCI 46
SRKK K +K K K K+KK K KR + I
Sbjct: 15 SRKKGVKALRKAAVAKSKDKQKKPKSKRAASESGI 49
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 31.6 bits (72), Expect = 0.045
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
K K K K KK +++ K++ K + R
Sbjct: 102 KPKPKPKPVKKVEEQPKREVKPVEPRPAS 130
Score = 31.6 bits (72), Expect = 0.048
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K + K K K K K K KK +++ KR+
Sbjct: 94 KPEPKPKPKPKPKPKPVKKVEEQPKRE 120
Score = 29.7 bits (67), Expect = 0.22
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
K K K K K K KK +++ K++ K
Sbjct: 98 KPKPKPKPKPKPVKKVEEQPKREVKP 123
Score = 28.9 bits (65), Expect = 0.37
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
K K K K K K KK +++ K++ +
Sbjct: 97 PKPKPKPKPKPKPVKKVEEQPKREVK 122
Score = 28.9 bits (65), Expect = 0.43
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKKRD 40
K K K K K KK +++ K++ K +
Sbjct: 100 KPKPKPKPKPVKKVEEQPKREVKPVE 125
Score = 27.0 bits (60), Expect = 2.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
K + K K K K K K KK +++ +
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPK 118
Score = 25.8 bits (57), Expect = 4.3
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
+ K K KK +++ K++ K + + FE
Sbjct: 104 KPKPKPVKKVEEQPKREVKPVEPRPASPFEN 134
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 31.7 bits (72), Expect = 0.046
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
K+K K +KK KK K K K K K K + Q
Sbjct: 84 PKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQ 114
Score = 30.5 bits (69), Expect = 0.12
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
KK KK K K K K K K K K + K
Sbjct: 92 KKPKKPKPKPKPKPKPKPKVKPQPKPK 118
Score = 29.4 bits (66), Expect = 0.29
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
KK K K K K K K K K + K KK +
Sbjct: 94 PKKPKPKPKPKPKPKPKVKPQPKPKKPPSK 123
Score = 28.6 bits (64), Expect = 0.49
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
T K K+K K +KK KK K K K K K
Sbjct: 80 TPPKPKEKPKPEKKPKKPKPKPKPKPKP 107
Score = 28.2 bits (63), Expect = 0.67
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K KK K K K K K K K K + K +
Sbjct: 93 KPKKPKPKPKPKPKPKPKVKPQPKPKK 119
Score = 28.2 bits (63), Expect = 0.76
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
+KK KK K K K K K K K K + +
Sbjct: 91 EKKPKKPKPKPKPKPKPKPKVKPQPK 116
Score = 28.2 bits (63), Expect = 0.82
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
+KK KK K K K K K K K K +
Sbjct: 90 PEKKPKKPKPKPKPKPKPKPKVKPQP 115
Score = 27.4 bits (61), Expect = 1.2
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
+ K K K K K K K K + K KK
Sbjct: 96 KPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAK 127
Score = 26.3 bits (58), Expect = 3.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKKR 39
K K+K K +KK KK K K K K +
Sbjct: 82 PKPKEKPKPEKKPKKPKPKPKPKPK 106
Score = 25.5 bits (56), Expect = 6.3
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
K K K K K + K KK K K
Sbjct: 103 PKPKPKPKVKPQPKPKKPPSKTAAKA 128
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 31.4 bits (71), Expect = 0.063
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+++ KK KK + K K K KK KKK
Sbjct: 142 PEAKEVKKPKKGQSPKVPKAPKPKKPKKKGS 172
Score = 30.2 bits (68), Expect = 0.16
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKK 36
+ KK KK + K K K KK KKK
Sbjct: 142 PEAKEVKKPKKGQSPKVPKAPKPKKPKKK 170
Score = 29.1 bits (65), Expect = 0.41
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
KK KK + K K K KK KKK
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSV 173
Score = 27.9 bits (62), Expect = 0.90
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
K K K KK KKK + K
Sbjct: 154 QSPKVPKAPKPKKPKKKGSVSNRSVKM 180
Score = 27.9 bits (62), Expect = 0.90
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
G S K K K KK KKK + K
Sbjct: 153 GQSPKVPKAPKPKKPKKKGSVSNRSVKMPGI 183
Score = 27.5 bits (61), Expect = 1.2
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKK 36
+ + K K KK KKK + K
Sbjct: 150 PKKGQSPKVPKAPKPKKPKKKGSVSNRSVKM 180
Score = 27.5 bits (61), Expect = 1.3
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+K KK + K K K KK KKK
Sbjct: 145 KEVKKPKKGQSPKVPKAPKPKKPKKKGSV 173
Score = 25.6 bits (56), Expect = 6.2
Identities = 8/33 (24%), Positives = 10/33 (30%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ K K KK KKK + K
Sbjct: 152 KGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGID 184
Score = 25.6 bits (56), Expect = 6.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
T+ + K+ KK KK + K K K KK
Sbjct: 139 TAPPEAKEVKKPKKGQSPKVPKAPKPKK 166
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 31.4 bits (71), Expect = 0.066
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 10 GTSRKKKKKKKKKKKKKKK----KKKKKKKKKKRDFEQLCINYANEHLQYYFNQHVFQYE 65
G R+ K KK KK KK ++ KK+KKK + Y +Q VF E
Sbjct: 604 GGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYG-----RKKSQAVFDLE 658
Query: 66 QEEYNKEG 73
+ E EG
Sbjct: 659 EIEEGLEG 666
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 31.4 bits (72), Expect = 0.066
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 14 KKKKKKKKKKKKKKKKKKKKK 34
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 31.4 bits (72), Expect = 0.066
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 15 KKKKKKKKKKKKKKKKKKKKK 35
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 31.4 bits (72), Expect = 0.066
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 16 KKKKKKKKKKKKKKKKKKKKK 36
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 31.4 bits (72), Expect = 0.066
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 17 KKKKKKKKKKKKKKKKKKKKK 37
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 31.4 bits (72), Expect = 0.066
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 18 KKKKKKKKKKKKKKKKKKKKK 38
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.8 bits (68), Expect = 0.22
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 20 KKKKKKKKKKKKKKKKKKKR 39
+K++ KKKKK+KK KK +
Sbjct: 733 EKRRLKKKKKRKKVKKWEVE 752
Score = 29.8 bits (68), Expect = 0.24
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 19 KKKKKKKKKKKKKKKKKKKKR 39
+K++ KKKKK+KK KK + ++
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.0 bits (66), Expect = 0.41
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 12 SRKKKKKKKKKKKKKKKKKK 31
R+ KKKKK+KK KK + +K
Sbjct: 734 KRRLKKKKKRKKVKKWEVEK 753
Score = 28.7 bits (65), Expect = 0.53
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 13 RKKKKKKKKKKKKKKKKKKK 32
+++ KKKKK+KK KK + +K
Sbjct: 734 KRRLKKKKKRKKVKKWEVEK 753
Score = 27.9 bits (63), Expect = 0.95
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 10 GTSRKKKKKKKKKKKKKKKKK 30
R KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 27.9 bits (63), Expect = 1.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 22 KKKKKKKKKKKKKKKKKRD 40
+K++ KKKKK+KK KK
Sbjct: 733 EKRRLKKKKKRKKVKKWEV 751
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 31.3 bits (71), Expect = 0.074
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKK 37
S K K K KKK K K KK KK+
Sbjct: 757 SASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 30.9 bits (70), Expect = 0.10
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
KK K KKK K K K KKK K ++
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKKSKAKSKK 778
Score = 30.6 bits (69), Expect = 0.14
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
S K K K KKK K K KK KK+
Sbjct: 757 SASTKGKAAKTVKKKSKAKSKKTTKKR 783
Score = 30.6 bits (69), Expect = 0.14
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
T +KK K KKK K K K KKK +
Sbjct: 745 TPYEKKTKAKKKSASTKGKAAKTVKKKSK 773
Score = 30.6 bits (69), Expect = 0.15
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
T KKK K K K KKK K K KK
Sbjct: 751 TKAKKKSASTKGKAAKTVKKKSKAKSKK 778
Score = 30.2 bits (68), Expect = 0.18
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
++ K K K KKK K K KK KK+
Sbjct: 757 SASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 30.2 bits (68), Expect = 0.19
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 10 GTSRKK---KKKKKKKKKKKKKKKKKKKKKKKR 39
++KK K K K KKK K K KK KKR
Sbjct: 751 TKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKR 783
Score = 29.8 bits (67), Expect = 0.26
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
+K K KKK K K K KKK K
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKKSKA 774
Score = 28.6 bits (64), Expect = 0.68
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
GT + +KK K KKK K K K K+
Sbjct: 741 GTPKTPYEKKTKAKKKSASTKGKAAKTVKK 770
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 31.2 bits (71), Expect = 0.076
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQHVFQY 64
+K+ K++K+ +K KK+++KKKK+ E+ I A +F + +Y
Sbjct: 559 EKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAE-----FFKRQEDKY 604
Score = 30.8 bits (70), Expect = 0.11
Identities = 13/32 (40%), Positives = 27/32 (84%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
R+K++K+ K++K+ +K KK+++KKK++ E+L
Sbjct: 555 REKEEKEALKEQKRLRKLKKQEEKKKKELEKL 586
Score = 26.5 bits (59), Expect = 2.8
Identities = 11/28 (39%), Positives = 22/28 (78%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ K++K+ +K KK+++KKKK+ +K +K
Sbjct: 562 ALKEQKRLRKLKKQEEKKKKELEKLEKA 589
Score = 25.4 bits (56), Expect = 7.1
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANE 51
+K+ +K KK+++KKKK+ +K +K K + ++
Sbjct: 565 EQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDK 603
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 31.2 bits (71), Expect = 0.076
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
R K+K++ KK+KKKK KK K F L
Sbjct: 345 AAFERPLALSPKRKREGDKKQKKKKSKKLKLTFNPL 380
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 31.2 bits (71), Expect = 0.077
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCIN 47
GDG ++KKK+K+K++ K + KK+K+K + + + IN
Sbjct: 623 GDGIKKRKKKRKRKRRFLTKIEGVKKEKRKDKKLKNVIIN 662
>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN). This family
consists of several eukaryotic survival motor neuron
(SMN) proteins. The Survival of Motor Neurons (SMN)
protein, the product of the spinal muscular
atrophy-determining gene, is part of a large
macromolecular complex (SMN complex) that functions in
the assembly of spliceosomal small nuclear
ribonucleoproteins (snRNPs). The SMN complex functions
as a specificity factor essential for the efficient
assembly of Sm proteins on U snRNAs and likely protects
cells from illicit, and potentially deleterious,
non-specific binding of Sm proteins to RNAs.
Length = 264
Score = 30.7 bits (69), Expect = 0.11
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 5 LRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKK 36
L+N D + ++ ++ KK+K KK + +KK
Sbjct: 29 LKNEDCATPQENDEQNPGKKRKNNKKNRSRKK 60
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 30.6 bits (69), Expect = 0.11
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 2 FANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
FA + K K +K KKK K KKKKK
Sbjct: 106 FAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKKV 142
Score = 30.6 bits (69), Expect = 0.14
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
RK K K +K KKK K KKKKK
Sbjct: 116 RKPKPKTEKLKKKITVNKSTNKKKKKV 142
Score = 29.0 bits (65), Expect = 0.42
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCIN 47
+ +K KKK K KKKKK K + + N
Sbjct: 120 PKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNN 155
Score = 28.3 bits (63), Expect = 0.74
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ +K K K +K KKK K KKKK+
Sbjct: 108 GPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKK 141
Score = 25.9 bits (57), Expect = 4.9
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
G +K K K +K KKK K KK+
Sbjct: 107 AGPLAISLMRKPKPKTEKLKKKITVNKSTNKKK 139
Score = 25.6 bits (56), Expect = 6.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
D ++K K K KK K K+KKK KKK
Sbjct: 57 DKKNKKFNKTDDLKDSKKTKLKQKKKIKKK 86
Score = 25.2 bits (55), Expect = 9.3
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
KKK K KKKKK K + +
Sbjct: 123 EKLKKKITVNKSTNKKKKKVLSSKDELIKY 152
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 30.3 bits (69), Expect = 0.12
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINY 48
N + ++ + ++ K+KKKKKKKKKKK+ E +C +
Sbjct: 68 LNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREWMCEKF 110
Score = 29.1 bits (66), Expect = 0.37
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 4 NLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCI 46
N +G+ R + ++ K+KKKKKKKKKKK++ + + I
Sbjct: 69 NDEHGELYERADRAEELLKEKKKKKKKKKKKEELREWMCEKFI 111
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 30.5 bits (69), Expect = 0.12
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
D + KKK +KKKKKKK+KK+ K + + K F+
Sbjct: 61 DKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKT 95
Score = 27.4 bits (61), Expect = 1.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ N +KKKKKKK+KK+ K + + K K
Sbjct: 60 EDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKT 95
Score = 27.0 bits (60), Expect = 1.8
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ + S+KK +KKKKKKK+KK+ K + + K
Sbjct: 61 DKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFK 94
Score = 27.0 bits (60), Expect = 2.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ +KKKKKK+KK+ K + + K K K+
Sbjct: 70 SEKKKKKKKEKKEPKSEGETKLGFKTPKK 98
Score = 26.6 bits (59), Expect = 2.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+KK+KK+ K + + K K KK KK
Sbjct: 73 KKKKKKEKKEPKSEGETKLGFKTPKKSKK 101
Score = 26.2 bits (58), Expect = 3.4
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
K KK+ K + KKK +KKKKKKK+K++ +
Sbjct: 56 KDKKEDKNNESKKKSEKKKKKKKEKKEPKSE 86
Score = 26.2 bits (58), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+KKKKK+KK+ K + + K K KK
Sbjct: 69 KSEKKKKKKKEKKEPKSEGETKLGFKTPKK 98
Score = 25.4 bits (56), Expect = 6.6
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
T + KK+ K + KKK +KKKKKKK+KK
Sbjct: 52 TSTKKDKKEDKNNESKKKSEKKKKKKKEKKEP 83
>gnl|CDD|217553 pfam03430, TATR, Trans-activating transcriptional regulator. This
family of trans-activating transcriptional regulator
(TATR), also known as intermediate early protein 1, are
common to the Nucleopolyhedroviruses.
Length = 571
Score = 30.3 bits (68), Expect = 0.15
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKK---KKKKKKKKKRDFEQLCINYANEHLQYYFNQHVFQ 63
+ D + KK K KK++K KK +++ ++C + + YF
Sbjct: 138 SSDSSKGKKLVNKPKKRQKYKKATIQSPTSLTEEENYNTEICTVAPTDQIAKYFLMDFSP 197
Query: 64 YEQEEYNKEGIRWRHIEFSD 83
Y ++ + + FSD
Sbjct: 198 YLEDAKSDCQMSSN--RFSD 215
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 30.3 bits (68), Expect = 0.15
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
RKKKK++K K+K+ KK K +K+ K + Q
Sbjct: 20 RKKKKEEKAKEKELKKLKAAQKEAKAKLQAQ 50
Score = 30.3 bits (68), Expect = 0.17
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
++KKKK++K K+K+ KK K +K+ +
Sbjct: 19 ERKKKKEEKAKEKELKKLKAAQKEAKAKL 47
Score = 27.6 bits (61), Expect = 1.6
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
T + ++KKKK++K K+K+ KK K +K
Sbjct: 14 TEEELERKKKKEEKAKEKELKKLKAAQK 41
Score = 26.8 bits (59), Expect = 3.1
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
+KKK++K K+K+ KK K +K+ K K +Q
Sbjct: 21 KKKKEEKAKEKELKKLKAAQKEAKAKLQAQQ 51
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 30.5 bits (69), Expect = 0.15
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANE 51
R+ K+ + + K +K+KK+ K FE I++
Sbjct: 426 RRTKRPEPRAAADTKSAAEKQKKRAKEPFE---IDFGAP 461
Score = 26.3 bits (58), Expect = 4.2
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
T R + + K +K+KK+ K+ + DF
Sbjct: 428 TKRPEPRAAADTKSAAEKQKKRAKEPFEIDFG 459
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 29.9 bits (68), Expect = 0.17
Identities = 7/27 (25%), Positives = 18/27 (66%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
R +++ KK++ +K+K ++++K K
Sbjct: 114 RAEQQAKKREAAGEKEKAPRRERKPKP 140
Score = 29.1 bits (66), Expect = 0.33
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ KK++ +K+K ++++K K K R
Sbjct: 118 QAKKREAAGEKEKAPRRERKPKPKAPR 144
Score = 29.1 bits (66), Expect = 0.33
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
KK++ +K+K ++++K K K ++
Sbjct: 120 KKREAAGEKEKAPRRERKPKPKAPRKK 146
Score = 28.7 bits (65), Expect = 0.48
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
K+K ++++K K K +KK+K + ++ Q
Sbjct: 128 KEKAPRRERKPKPKAPRKKRKPRAQKPEPQ 157
Score = 28.7 bits (65), Expect = 0.49
Identities = 5/27 (18%), Positives = 19/27 (70%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
++ +++ KK++ +K+K ++++K +
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPK 139
Score = 28.4 bits (64), Expect = 0.51
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
A R G K ++++K K K +KK+K + +K
Sbjct: 119 AKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKP 154
Score = 28.4 bits (64), Expect = 0.56
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K++ +K+K ++++K K K +K+
Sbjct: 121 KREAAGEKEKAPRRERKPKPKAPRKKR 147
Score = 28.4 bits (64), Expect = 0.62
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
R+ +K+K ++++K K K +KK++
Sbjct: 122 REAAGEKEKAPRRERKPKPKAPRKKRK 148
Score = 28.0 bits (63), Expect = 0.72
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
++K ++++K K K +KK+K + +K
Sbjct: 124 AAGEKEKAPRRERKPKPKAPRKKRKPRAQKP 154
Score = 26.8 bits (60), Expect = 2.1
Identities = 6/26 (23%), Positives = 18/26 (69%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
+++ KK++ +K+K ++++K K +
Sbjct: 116 EQQAKKREAAGEKEKAPRRERKPKPK 141
Score = 26.4 bits (59), Expect = 2.5
Identities = 5/26 (19%), Positives = 18/26 (69%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ ++ +++ KK++ +K+K +++R
Sbjct: 111 QAQRAEQQAKKREAAGEKEKAPRRER 136
Score = 26.0 bits (58), Expect = 4.1
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCIN 47
RK K K +KK+K + +K + + D +L +
Sbjct: 135 ERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVG 170
Score = 26.0 bits (58), Expect = 4.2
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ ++++K K K +KK+K + +K +
Sbjct: 130 KAPRRERKPKPKAPRKKRKPRAQKPE 155
Score = 25.7 bits (57), Expect = 5.0
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
++++K K K +KK+K + +K + +
Sbjct: 132 PRRERKPKPKAPRKKRKPRAQKPEPQH 158
Score = 25.3 bits (56), Expect = 6.2
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
++++K K K +KK+K + +K + +
Sbjct: 131 APRRERKPKPKAPRKKRKPRAQKPEPQ 157
Score = 25.3 bits (56), Expect = 7.7
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
R++K K K +KK+K + +K + +
Sbjct: 130 KAPRRERKPKPKAPRKKRKPRAQKPEPQHTP 160
Score = 24.9 bits (55), Expect = 8.2
Identities = 4/27 (14%), Positives = 17/27 (62%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ + ++ +++ KK++ +K+K ++
Sbjct: 109 KVQAQRAEQQAKKREAAGEKEKAPRRE 135
Score = 24.9 bits (55), Expect = 8.3
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
++ K + ++ +++ KK++ +K+K R
Sbjct: 106 AKAKVQAQRAEQQAKKREAAGEKEKAPR 133
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 28.9 bits (65), Expect = 0.17
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
T KKKKKKKKKK + K KK
Sbjct: 18 TEADLVKKKKKKKKKKAEDTAATAKAKK 45
Score = 27.7 bits (62), Expect = 0.47
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKK 38
KKKKKKKKKK + K KK
Sbjct: 23 VKKKKKKKKKKAEDTAATAKAKKAT 47
Score = 27.7 bits (62), Expect = 0.50
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKK 38
KKKKKKKKKK + K KK
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKA 46
Score = 27.3 bits (61), Expect = 0.71
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDF 41
KKKKKKKKKK + K KK D
Sbjct: 24 KKKKKKKKKKAEDTAATAKAKKATAEDV 51
Score = 24.2 bits (53), Expect = 7.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKK 38
K + KKKKKKKKKK +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATA 41
>gnl|CDD|226814 COG4379, COG4379, Mu-like prophage tail protein gpP [General
function prediction only].
Length = 386
Score = 30.2 bits (68), Expect = 0.18
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
K + +K+K +K K KK KK E
Sbjct: 353 KAEAARKRKGDRKGVSHKAKKGGKKNQAET 382
Score = 29.0 bits (65), Expect = 0.40
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKK 36
+RK+K +K K KK KK + +
Sbjct: 354 AEAARKRKGDRKGVSHKAKKGGKKNQAE 381
Score = 27.9 bits (62), Expect = 0.90
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
KK + +K+K +K K KK + +
Sbjct: 351 PKKAEAARKRKGDRKGVSHKAKKGGKKNQ 379
Score = 27.1 bits (60), Expect = 1.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
+ +K+K +K K KK KK + + FE
Sbjct: 356 AARKRKGDRKGVSHKAKKGGKKNQAETAGFE 386
Score = 26.7 bits (59), Expect = 2.6
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKK 34
RK +K K KK KK + +
Sbjct: 355 EAARKRKGDRKGVSHKAKKGGKKNQAE 381
Score = 26.3 bits (58), Expect = 3.7
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKKKKKKKK 35
+ ++K +K K KK KK + +
Sbjct: 353 KAEAARKRKGDRKGVSHKAKKGGKKNQAE 381
Score = 26.0 bits (57), Expect = 4.2
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ + +K+K +K K KK KK +
Sbjct: 353 KAEAARKRKGDRKGVSHKAKKGGKKNQA 380
Score = 26.0 bits (57), Expect = 5.0
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKK 35
+ +K+K +K K KK KK
Sbjct: 351 PKKAEAARKRKGDRKGVSHKAKKGGKK 377
Score = 25.6 bits (56), Expect = 7.2
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+K+K +K K KK KK + +
Sbjct: 355 EAARKRKGDRKGVSHKAKKGGKKNQAE 381
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation
factor 3 (eIF3). In yeast it is called Hcr1. The
Saccharomyces cerevisiae protein eIF3j (HCR1) has been
shown to be required for processing of 20S pre-rRNA and
binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 29.6 bits (67), Expect = 0.20
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCI 46
K K KK K K ++K+K K++K++K E
Sbjct: 55 KAKAKKALKAKIEEKEKAKREKEEKGLRELEED 87
Score = 28.1 bits (63), Expect = 0.72
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
+ KK K K ++K+K K++K++K + E
Sbjct: 57 KAKKALKAKIEEKEKAKREKEEKGLRELEE 86
Score = 26.9 bits (60), Expect = 1.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
K K K K KK K K ++K+K KR
Sbjct: 49 KAKVAAKAKAKKALKAKIEEKEKAKR 74
Score = 26.9 bits (60), Expect = 1.7
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
+K+++K K K K KK K K ++++ +
Sbjct: 44 EKEEEKAKVAAKAKAKKALKAKIEEKEKAK 73
Score = 26.9 bits (60), Expect = 1.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ K K K KK K K ++K+K K+++
Sbjct: 46 EEEKAKVAAKAKAKKALKAKIEEKEKAKREK 76
Score = 26.5 bits (59), Expect = 2.6
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
+ K KKKK K K K D++
Sbjct: 199 KAAKGGKKKKGKAKAKLNVGGANDDDDDYD 228
Score = 26.2 bits (58), Expect = 3.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K K KK K K ++K+K K++K +
Sbjct: 52 VAAKAKAKKALKAKIEEKEKAKREKEE 78
Score = 25.8 bits (57), Expect = 5.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
K+++K K K K KK K K ++K
Sbjct: 43 EEKEEEKAKVAAKAKAKKALKAKIEEK 69
Score = 25.4 bits (56), Expect = 5.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+K K K K KK K K ++K+K
Sbjct: 45 KEEEKAKVAAKAKAKKALKAKIEEKEKA 72
Score = 25.4 bits (56), Expect = 6.4
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDF 41
+ +K K KKKK K K K D
Sbjct: 196 KAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 25.4 bits (56), Expect = 6.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKK 36
+K K +K K KKKK K K K
Sbjct: 191 INEKLKAEKAAKGGKKKKGKAKAK 214
Score = 25.4 bits (56), Expect = 7.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKK 37
+K K +K K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAK 214
Score = 25.4 bits (56), Expect = 7.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 16 KKKKKKKKKKKKKKKKKKKKKKK 38
+K K +K K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAK 214
Score = 25.0 bits (55), Expect = 7.9
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDF 41
K K +K K KKKK K K K
Sbjct: 194 KLKAEKAAKGGKKKKGKAKAKLNVGGAN 221
Score = 25.0 bits (55), Expect = 8.0
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
K K K ++K+K K++K++K ++ +
Sbjct: 60 KALKAKIEEKEKAKREKEEKGLRELEEDTPE 90
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 29.8 bits (68), Expect = 0.21
Identities = 8/37 (21%), Positives = 22/37 (59%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
+ +++++ +++++KKKKK+K +K R+
Sbjct: 141 GKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPREVV 177
>gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase. Proteins of the
YlqF family contain all sequence motifs typical of the
vast class of P-loop-containing GTPases, but show a
circular permutation, with a G4-G1-G3 pattern of motifs
as opposed to the regular G1-G3-G4 pattern seen in most
GTPases. The YlqF subfamily is represented in all
eukaryotes as well as a phylogenetically diverse array
of bacteria (including gram-positive bacteria,
proteobacteria, Synechocystis, Borrelia, and
Thermotoga).
Length = 171
Score = 29.4 bits (67), Expect = 0.22
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 1 MFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+F N +NG G + KK KK K+ +K K K + R
Sbjct: 79 LFVNAKNGKGVKKLLKKAKKLLKENEKLKAKGLLPRPLR 117
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 29.6 bits (67), Expect = 0.26
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
++ K KKK K + KK +KK +
Sbjct: 82 AAKAAAAKAPAKKKLKDELDSSKKAEKKNALD 113
Score = 29.6 bits (67), Expect = 0.30
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
T+ K K KKK K + KK +K++
Sbjct: 79 TKTAAKAAAAKAPAKKKLKDELDSSKKAEKKN 110
Score = 28.8 bits (65), Expect = 0.55
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDF 41
KKK K K K KKK K +
Sbjct: 74 IPKKKTKTAAKAAAAKAPAKKKLKDELDSS 103
Score = 28.4 bits (64), Expect = 0.69
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
K K K KKK K + K
Sbjct: 77 KKTKTAAKAAAAKAPAKKKLKDELDSSK 104
Score = 28.4 bits (64), Expect = 0.76
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
D + KKK K K K KKK +D
Sbjct: 67 DDATESDIPKKKTKTAAKAAAAKAPAKKKLKD 98
Score = 28.0 bits (63), Expect = 0.96
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ K KKK K + KK +KK +D
Sbjct: 84 KAAAAKAPAKKKLKDELDSSKKAEKKNALDKD 115
Score = 28.0 bits (63), Expect = 0.98
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
D T KKK K K K KKK K + +
Sbjct: 68 DATESDIPKKKTKTAAKAAAAKAPAKKKLKDELD 101
Score = 27.7 bits (62), Expect = 1.3
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
D +K K K K KKK K +
Sbjct: 73 DIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKA 106
Score = 27.7 bits (62), Expect = 1.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
K KKK K + KK +KK D +
Sbjct: 87 AAKAPAKKKLKDELDSSKKAEKKNALDKD 115
Score = 27.3 bits (61), Expect = 1.9
Identities = 10/42 (23%), Positives = 12/42 (28%)
Query: 1 MFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
KKK K + KK +KK K D
Sbjct: 78 KTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLN 119
Score = 26.9 bits (60), Expect = 2.2
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
T + KKK K K K K+ +
Sbjct: 64 KDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLK 97
Score = 26.1 bits (58), Expect = 3.9
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
++KK K + KK +KK K +
Sbjct: 91 PAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122
>gnl|CDD|222928 PHA02778, PHA02778, major capsid L1 protein; Provisional.
Length = 503
Score = 29.4 bits (67), Expect = 0.26
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
G R+ +++K+K + K++++K+
Sbjct: 475 GLRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 27.5 bits (62), Expect = 1.3
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKK 32
A LR ++K + K++++K+
Sbjct: 474 AGLRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 27.5 bits (62), Expect = 1.6
Identities = 5/29 (17%), Positives = 15/29 (51%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKK 36
G +++K+K + K++++K+
Sbjct: 475 GLRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 27.1 bits (61), Expect = 2.1
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
R++ +++K+K + K++++KR
Sbjct: 477 RRRTRRRKRKSTSSSSSRSTKRRRRKR 503
>gnl|CDD|218660 pfam05620, DUF788, Protein of unknown function (DUF788). This
family consists of several eukaryotic proteins of
unknown function.
Length = 166
Score = 29.2 bits (66), Expect = 0.26
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 1 MFANLRNGDGTSRKKKKKKKKKKKKKKKKK 30
FA+L + G + K K+++K +K+ +K
Sbjct: 137 PFASLPSSQGAETNETKSKRQEKLEKRGEK 166
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 29.3 bits (66), Expect = 0.28
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCIN 47
T+ +K KK KKK K+K +++KK + D ++ N
Sbjct: 57 TTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEEN 93
Score = 27.8 bits (62), Expect = 0.84
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLC 45
+KK+ +K KK KKK K+K + ++
Sbjct: 50 QPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPE 84
Score = 27.0 bits (60), Expect = 1.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLC 45
+ ++ KKK+ +K KK KKK K++ E+
Sbjct: 47 SPKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEK 81
>gnl|CDD|218140 pfam04547, Anoctamin, Calcium-activated chloride channel. The
family carries eight putative transmembrane domains,
and, although it has no similarity to other known
channel proteins, it is clearly a calcium-activated
ionic channel. It is expressed in various secretory
epithelia, the retina and sensory neurons, and mediates
receptor-activated chloride currents in diverse
physiological processes.
Length = 449
Score = 29.5 bits (67), Expect = 0.29
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 19/68 (27%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 73
KKK +KKK KKKK+K+KK ++ + E + E Y+ G
Sbjct: 270 KKKIRKKKIKKKKEKEKKPEENEILERIEN-------------------ESELPPYDVFG 310
Query: 74 IRWRHIEF 81
+ ++E
Sbjct: 311 LFDDYLEM 318
>gnl|CDD|224000 COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit
(contains helicase and exonuclease domains) [DNA
replication, recombination, and repair].
Length = 1139
Score = 29.4 bits (66), Expect = 0.30
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 2 FANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL-CINYANEHLQYYFN-- 58
F L T +K +KK KKK K+ K + +FE++ + L
Sbjct: 268 FERLDKALPTKLEKIFFQKKLKKKTKEAKLLARPPLHAEFEEIENRILLADELLRLAPRL 327
Query: 59 ---QHVFQYEQEEYNKEGIRWRHIEFSD 83
+ + E Y+ E + ++F D
Sbjct: 328 RALLKLLEELIERYDAEKRQRNALDFDD 355
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 29.2 bits (66), Expect = 0.35
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
++ K K K K K +K K KKK+KKK+
Sbjct: 1154 KEQRLKSKTKGKASKLRKPKLKKKEKKKK 1182
Score = 29.2 bits (66), Expect = 0.37
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
R K K K K K +K K KKK+KKKK+
Sbjct: 1155 EQRLKSKTKGKASKLRKPKLKKKEKKKKKS 1184
Score = 27.3 bits (61), Expect = 1.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K+++ K K K K K +K K KKK++
Sbjct: 1151 EIAKEQRLKSKTKGKASKLRKPKLKKKEKK 1180
Score = 26.5 bits (59), Expect = 2.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
S+ K K K +K K KKK+KKKKK
Sbjct: 1159 KSKTKGKASKLRKPKLKKKEKKKKKSSA 1186
Score = 26.5 bits (59), Expect = 3.1
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
RK K KKK+KKKKK K KK
Sbjct: 1169 LRKPKLKKKEKKKKKSSADKSKKASVVG 1196
Score = 26.2 bits (58), Expect = 4.1
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
G + K +K K KKK+KKKKK K KK
Sbjct: 1164 GKASKLRKPKLKKKEKKKKKSSADKSKKASVVG 1196
Score = 26.2 bits (58), Expect = 4.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCIN 47
S+ +K K KKK+KKKKK K KK ++
Sbjct: 1167 SKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVD 1202
Score = 26.2 bits (58), Expect = 4.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
K +K K KKK+KKKKK K KK
Sbjct: 1162 TKGKASKLRKPKLKKKEKKKKKSSADKSKK 1191
Score = 25.8 bits (57), Expect = 5.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
T K K +K K KKK+KKKKK K +
Sbjct: 1162 TKGKASKLRKPKLKKKEKKKKKSSADKSKK 1191
Score = 25.8 bits (57), Expect = 6.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
++ K K +K K KKK+KKKKK K
Sbjct: 1161 KTKGKASKLRKPKLKKKEKKKKKSSADKSK 1190
Score = 25.4 bits (56), Expect = 8.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
K+++ K K K K K +K K KKK
Sbjct: 1150 KEIAKEQRLKSKTKGKASKLRKPKLKKK 1177
Score = 25.0 bits (55), Expect = 9.9
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
NG KKK KK+ + KKKKK ++
Sbjct: 1296 SNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEK 1329
>gnl|CDD|220654 pfam10254, Pacs-1, PACS-1 cytosolic sorting protein. PACS-1 is a
cytosolic sorting protein that directs the localisation
of membrane proteins in the trans-Golgi network
(TGN)/endosomal system. PACS-1 connects the clathrin
adaptor AP-1 to acidic cluster sorting motifs contained
in the cytoplasmic domain of cargo proteins such as
furin, the cation-independent mannose-6-phosphate
receptor and in viral proteins such as human
immunodeficiency virus type 1 Nef.
Length = 413
Score = 29.0 bits (65), Expect = 0.35
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKRDFEQLCI 46
K+K KK KK K+K+ + + CI
Sbjct: 331 TKEKNKKVPVMFLGKKPKEKEVESKSQCI 359
Score = 25.2 bits (55), Expect = 7.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKK 38
K+K KK KK K+K+ + K
Sbjct: 331 TKEKNKKVPVMFLGKKPKEKEVESK 355
>gnl|CDD|224403 COG1486, CelF, Alpha-galactosidases/6-phospho-beta-glucosidases,
family 4 of glycosyl hydrolases [Carbohydrate transport
and metabolism].
Length = 442
Score = 29.2 bits (66), Expect = 0.42
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 9 DGTSRKKK-KKKKKKKKKKKKKKKKKKKKKKRDFEQLCINY----ANEHLQYYFNQHVFQ 63
DG + + ++ + + K + L Y ++ H YY+ + +
Sbjct: 210 DGEDLYPELLEALEEGGSPSEPENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKE 269
Query: 64 YEQEEYNKEGIR---WRHIEFSDNTLCLQ-LVEGKPNGLL 99
+ +E K G R E L + ++ KP L
Sbjct: 270 KKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELE 309
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 28.9 bits (65), Expect = 0.42
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
++K K KKKK KKKK K K KK KK D
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKDDKKDD 108
Score = 28.1 bits (63), Expect = 0.76
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
S+KKK K K KK KK K +KK +K+ +
Sbjct: 91 SKKKKDKDKDKKDDKKDDKSEKKDEKEAE 119
Score = 27.7 bits (62), Expect = 0.94
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
+KKK KKKK K K KK KK K +K+D +
Sbjct: 87 KKKKSKKKKDKDKDKKDDKKDDKSEKKDEK 116
Score = 27.3 bits (61), Expect = 1.1
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K KKKK KKKK K K KK KK K +
Sbjct: 84 WKWKKKKSKKKKDKDKDKKDDKKDDKSE 111
Score = 26.2 bits (58), Expect = 3.2
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
KKKK K K KK KK K +KK +K
Sbjct: 90 KSKKKKDKDKDKKDDKKDDKSEKKDEK 116
Score = 26.2 bits (58), Expect = 3.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
KKKK K K KK KK K +KK +++ E
Sbjct: 91 SKKKKDKDKDKKDDKKDDKSEKKDEKEAED 120
Score = 26.2 bits (58), Expect = 3.6
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ K KKKK KKKK K K KK KK +
Sbjct: 83 KWKWKKKKSKKKKDKDKDKKDDKKDDKS 110
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 28.6 bits (64), Expect = 0.43
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ D T ++ + K + K+KKK++ K K +K
Sbjct: 105 STDETEQEDPPETKTESKEKKKREVPKPKTEK 136
Score = 27.4 bits (61), Expect = 1.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ K + K+KKK++ K K +K+K K
Sbjct: 116 ETKTESKEKKKREVPKPKTEKEKPKT 141
Score = 27.0 bits (60), Expect = 1.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ K + K+KKK++ K K +K+K
Sbjct: 114 PPETKTESKEKKKREVPKPKTEKEKP 139
Score = 26.6 bits (59), Expect = 1.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ KKK++ K K +K+K K + KK K
Sbjct: 119 TESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Score = 26.3 bits (58), Expect = 2.7
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
++ + K + K+KKK++ K K ++
Sbjct: 111 QEDPPETKTESKEKKKREVPKPKTEK 136
Score = 26.3 bits (58), Expect = 2.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ K + K+KKK++ K K +K+K +
Sbjct: 115 PETKTESKEKKKREVPKPKTEKEKPKT 141
Score = 26.3 bits (58), Expect = 3.0
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+++ + K + K+KKK++ K K
Sbjct: 110 EQEDPPETKTESKEKKKREVPKPKTEK 136
Score = 26.3 bits (58), Expect = 3.2
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
T +++ + K + K+KKK++ K K
Sbjct: 106 TDETEQEDPPETKTESKEKKKREVPKPKT 134
Score = 25.5 bits (56), Expect = 4.6
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ K + K+KKK++ K K +K++
Sbjct: 113 DPPETKTESKEKKKREVPKPKTEKEK 138
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 28.8 bits (65), Expect = 0.47
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKK-----KRDFEQL 44
++ KKK++ K + K+ KK +R+ EQL
Sbjct: 536 LKQPAVKKKEEAAAPKAETVKRSSKKLSYKLQRELEQL 573
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 28.4 bits (64), Expect = 0.52
Identities = 15/31 (48%), Positives = 15/31 (48%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDF 41
KKKKKKK KKKK KK K F
Sbjct: 179 EEEKKKKKKKSAKKKKLKKVAAVGMKAISSF 209
Score = 28.0 bits (63), Expect = 0.73
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
S +++KKKKKKK KKKK KK
Sbjct: 174 KSNNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 27.7 bits (62), Expect = 1.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKK 36
N +KKKKKK KKKK KK K
Sbjct: 175 SNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 27.7 bits (62), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ +++KKKKKKK KKKK KK +
Sbjct: 176 NNAEEEKKKKKKKSAKKKKLKKVAAVGMK 204
Score = 26.9 bits (60), Expect = 2.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
D +++KKKKKKK KKKK KK
Sbjct: 169 ARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAA 200
Score = 25.7 bits (57), Expect = 5.6
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ + KKK +++KKKKKKK KKKK
Sbjct: 168 AARDKKKSNNAEEEKKKKKKKSAKKKK 194
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 28.1 bits (63), Expect = 0.56
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ KK+ K++KKK+KKKKKKK KK KK
Sbjct: 83 TAKKRAKRQKKKQKKKKKKKAKKGNKK 109
Score = 27.7 bits (62), Expect = 0.90
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKK 37
T++K+ K++KKK+KKKKKKK KK KK
Sbjct: 83 TAKKRAKRQKKKQKKKKKKKAKKGNKK 109
Score = 26.9 bits (60), Expect = 1.4
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 16 KKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
KK+ K++KKK+KKKKKKK KK + E+
Sbjct: 85 KKRAKRQKKKQKKKKKKKAKKGNKKEEK 112
Score = 26.5 bits (59), Expect = 1.9
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKK 38
+K KK+ K++KKK+KKKKKKK KK
Sbjct: 81 EKTAKKRAKRQKKKQKKKKKKKAKK 105
Score = 26.5 bits (59), Expect = 2.1
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKK 38
K KK+ K++KKK+KKKKKKK KK
Sbjct: 82 KTAKKRAKRQKKKQKKKKKKKAKKG 106
Score = 26.2 bits (58), Expect = 3.1
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
R K++KKK+KKKKKKK KK KK++K
Sbjct: 87 RAKRQKKKQKKKKKKKAKKGNKKEEK 112
Score = 25.8 bits (57), Expect = 4.2
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
++ K++KKK+KKKKKKK KK KK++++ +
Sbjct: 86 KRAKRQKKKQKKKKKKKAKKGNKKEEKEGSK 116
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 28.5 bits (64), Expect = 0.57
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANE 51
+ ++K K +K K ++ +KK KK ++
Sbjct: 338 LAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKS 378
Score = 27.3 bits (61), Expect = 1.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 37
A L T++ +K K ++ +KK KK + K K
Sbjct: 339 AVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAK 373
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 28.5 bits (64), Expect = 0.57
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQY 55
+K+K KK KK KK+K++ N +++
Sbjct: 221 SSPSRKRKAPKKVAKKVAAAKKRKQKRSPPPPFNMVSDNTDD 262
Score = 25.0 bits (55), Expect = 9.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKK 34
RK KK KK KK+K+K+
Sbjct: 227 RKAPKKVAKKVAAAKKRKQKRS 248
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 28.5 bits (64), Expect = 0.61
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYA 49
+ ++ + K+ KKKKKKKKKKKKK E + Y
Sbjct: 45 SENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYD 80
Score = 28.1 bits (63), Expect = 0.79
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 1 MFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
A L + + + K+ KKKKKKKKKKKKK +
Sbjct: 39 FLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLA 78
Score = 26.2 bits (58), Expect = 3.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ + + K++K++ K+K KKK KK KK
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKK 31
Score = 26.2 bits (58), Expect = 3.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
+ K++K++ K+K KKK KK KK D +
Sbjct: 8 NEVKQQKQQNKQKGTKKKNKKSKKDVDDDD 37
Score = 26.2 bits (58), Expect = 3.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
N +G + K++K++ K+K KKK KK KK D L
Sbjct: 3 NENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFL 40
Score = 25.1 bits (55), Expect = 8.3
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 2 FANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ + KKKKKKKKKKKKK +
Sbjct: 43 LISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDL 81
Score = 25.1 bits (55), Expect = 9.2
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ KKKKKKKKKKKKK +
Sbjct: 51 ENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLP 82
Score = 25.1 bits (55), Expect = 9.7
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANE 51
K+ KKKKKKKKKKKKK + + + A
Sbjct: 53 KQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAF 90
Score = 25.1 bits (55), Expect = 9.9
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQHV 61
+ ++ + K+ KKKKKKKKKKKK++ + + + +
Sbjct: 44 ISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQ 91
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4;
Provisional.
Length = 191
Score = 28.2 bits (63), Expect = 0.61
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
S+K KKKK +KKK KK KKKKK+++
Sbjct: 47 SKKTSKKKKTTPRKKKTTKKTKKKKKEKEEV 77
Score = 27.5 bits (61), Expect = 1.0
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCIN 47
KKKK +KKK KK KKKKK+K+ E
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEE 84
Score = 27.1 bits (60), Expect = 1.8
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
+ + KKKK +KKK KK KKKKK+K + +L
Sbjct: 47 SKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPEL 80
Score = 26.3 bits (58), Expect = 3.0
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 16 KKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHL 53
KK KKKK +KKK KK KKK+ ++ A E L
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEEL 85
>gnl|CDD|221303 pfam11902, DUF3422, Protein of unknown function (DUF3422). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria, archaea and
eukaryotes. Proteins in this family are typically
between 426 to 444 amino acids in length.
Length = 419
Score = 28.3 bits (64), Expect = 0.61
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 73 GIRW-RHIEFSDNTLCLQLVEGKP 95
+RW RH EFS T +P
Sbjct: 74 RLRWERHTEFSTYTFFRPGPGDEP 97
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 28.3 bits (63), Expect = 0.64
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
+ K + K +K K+ KK+KK+++K + +
Sbjct: 22 RPVKDEAKPRKIKRVKKRKKREEKDELD 49
Score = 27.5 bits (61), Expect = 1.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKK 35
G K + K +K K+ KK+KK+++K
Sbjct: 20 GPRPVKDEAKPRKIKRVKKRKKREEK 45
Score = 27.5 bits (61), Expect = 1.5
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKK 37
+ K + K +K K+ KK+KK+++K
Sbjct: 21 PRPVKDEAKPRKIKRVKKRKKREEK 45
Score = 27.1 bits (60), Expect = 1.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
R K + K +K K+ KK+KK+++K + D
Sbjct: 22 RPVKDEAKPRKIKRVKKRKKREEKDELD 49
Score = 25.9 bits (57), Expect = 4.5
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKRDFEQL 44
+ K + K +K K+ KK+KK+ + ++L
Sbjct: 22 RPVKDEAKPRKIKRVKKRKKREEKDEL 48
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 28.2 bits (63), Expect = 0.77
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 17 KKKKKKKKKKKKKKKKKKKKKKRD 40
+ K KK KKKKKKKKK++K D
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDLD 293
Score = 27.4 bits (61), Expect = 1.3
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 16 KKKKKKKKKKKKKKKKKKKKKKKRDFE 42
+ K KK KKKKKKKKK++K + E
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDLDEDE 296
Score = 27.4 bits (61), Expect = 1.4
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ K KK KKKKKKKKK++K D
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDLDED 295
Score = 27.0 bits (60), Expect = 2.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKK 36
D + K KK KKKKKKKKK++K
Sbjct: 265 DYYDVSEMVKFKKPKKKKKKKKKRRKDL 292
Score = 26.6 bits (59), Expect = 2.5
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKK 33
D + K KK KKKKKKKKK++K
Sbjct: 267 YDVSEMVKFKKPKKKKKKKKKRRKDL 292
>gnl|CDD|152459 pfam12024, DUF3512, Domain of unknown function (DUF3512). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 231 to 249 amino acids in length. This domain
is found associated with pfam00439.
Length = 245
Score = 28.1 bits (63), Expect = 0.81
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 23 KKKKKKKKKKKKKKKKRDFEQLCINYANEHLQ 54
K KK +K+ KK+ + + + L + A E +
Sbjct: 1 KSKKPRKEIKKEFEPEGNDCSLTDSLAEEKVL 32
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 27.9 bits (62), Expect = 0.84
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKKKKK 32
D S ++ K+KKKKK KKKK K
Sbjct: 79 TEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 26.3 bits (58), Expect = 2.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 15 KKKKKKKKKKKKKKKKKKK 33
++ K+KKKKK KKKK K
Sbjct: 86 NQENKQKKKKKDKKKKSPK 104
Score = 26.3 bits (58), Expect = 2.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 16 KKKKKKKKKKKKKKKKKKK 34
++ K+KKKKK KKKK K
Sbjct: 86 NQENKQKKKKKDKKKKSPK 104
Score = 26.3 bits (58), Expect = 2.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 17 KKKKKKKKKKKKKKKKKKK 35
++ K+KKKKK KKKK K
Sbjct: 86 NQENKQKKKKKDKKKKSPK 104
Score = 26.3 bits (58), Expect = 2.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 18 KKKKKKKKKKKKKKKKKKK 36
++ K+KKKKK KKKK K
Sbjct: 86 NQENKQKKKKKDKKKKSPK 104
Score = 26.3 bits (58), Expect = 2.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 19 KKKKKKKKKKKKKKKKKKK 37
++ K+KKKKK KKKK K
Sbjct: 86 NQENKQKKKKKDKKKKSPK 104
Score = 26.3 bits (58), Expect = 2.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 20 KKKKKKKKKKKKKKKKKKK 38
++ K+KKKKK KKKK K
Sbjct: 86 NQENKQKKKKKDKKKKSPK 104
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 27.6 bits (62), Expect = 0.91
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKRD 40
KKK KK KK+K+K++K+ +K D
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGAD 36
Score = 27.2 bits (61), Expect = 1.4
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 17 KKKKKKKKKKKKKKKKKKKKKKRD 40
KKK KK KK+K+K++K+ +K D
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADD 37
Score = 27.2 bits (61), Expect = 1.5
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKK 35
KKK KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
Score = 27.2 bits (61), Expect = 1.5
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKK 36
KKK KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
Score = 27.2 bits (61), Expect = 1.5
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 16 KKKKKKKKKKKKKKKKKKKKKK 37
KKK KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
Score = 26.4 bits (59), Expect = 2.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKK 34
+KK KK KK+K+K++K+ +K
Sbjct: 12 VDKKKAKKAKKEKRKQRKQARKGA 35
>gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic
subunit.
Length = 1079
Score = 28.0 bits (62), Expect = 0.95
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKK 31
G SRKK K KK KKK K
Sbjct: 660 GGSRKKSSKSSKKGSDKKKSGK 681
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 27.8 bits (62), Expect = 0.99
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
S +K K K KK KK +K D
Sbjct: 187 LSSTASSGDEKSPKSKAAPKKAGKKMRKWD 216
Score = 26.6 bits (59), Expect = 2.7
Identities = 7/37 (18%), Positives = 10/37 (27%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ K +K K K KK K+
Sbjct: 175 EGPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKK 211
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 27.7 bits (62), Expect = 1.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKK 36
+ T +KKK + KKK K KK +
Sbjct: 147 ERTEILAEKKKPRSKKKSSKNSKKLRID 174
Score = 27.7 bits (62), Expect = 1.1
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKK 34
+KKK + KKK K KK +
Sbjct: 146 CERTEILAEKKKPRSKKKSSKNSKKLRID 174
Score = 27.0 bits (60), Expect = 2.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
R + +KKK + KKK K KK +
Sbjct: 148 RTEILAEKKKPRSKKKSSKNSKKLRID 174
Score = 26.6 bits (59), Expect = 2.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 17 KKKKKKKKKKKKKKKKKKKKKKRDFEQLC 45
+KKK + KKK K KK + E L
Sbjct: 153 AEKKKPRSKKKSSKNSKKLRIDLVGEWLS 181
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 27.8 bits (62), Expect = 1.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
R K KK+K KK+K+ K++ K
Sbjct: 351 RVKAKKEKLAKKRKQVSKEEAAAIKAA 377
Score = 26.3 bits (58), Expect = 3.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ K KK+K KK+K+ K++ K
Sbjct: 350 ARVKAKKEKLAKKRKQVSKEEAAAIKA 376
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 27.8 bits (62), Expect = 1.1
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
+ T+ K+++ ++++K++KKKK KK K+ ++E L
Sbjct: 51 EEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELL 87
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 27.9 bits (62), Expect = 1.1
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
N G +K+K++ K++KKKKK+K K++ K ++ E+
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Score = 27.2 bits (60), Expect = 2.0
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
T K+ K + K+++K+K++ K++KKK+ +
Sbjct: 92 TKPAKEPKNESGKEEEKEKEQVKEEKKKKKEK 123
Score = 26.0 bits (57), Expect = 5.3
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ + K+++K+K++ K++KKKKK+K K+
Sbjct: 97 EPKNESGKEEEKEKEQVKEEKKKKKEKPKEE 127
Score = 25.6 bits (56), Expect = 6.4
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
K+ K + K+++K+K++ K++KKKK++ +
Sbjct: 88 PAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPK 125
Score = 25.6 bits (56), Expect = 7.1
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 37
+G ++K++ K++KKKKK+K K++ K +K
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRK 132
Score = 25.2 bits (55), Expect = 9.1
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
K++ K++KKKKK+K K++ K +K K + ++
Sbjct: 108 KEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKE 139
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 27.6 bits (61), Expect = 1.2
Identities = 17/34 (50%), Positives = 19/34 (55%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
DG K KKKKKK K KKK KK K+ D +
Sbjct: 235 DGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDD 268
Score = 26.8 bits (59), Expect = 2.1
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
G ++K KKKKKK K KKK KK KR
Sbjct: 231 KGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKRG 264
Score = 25.3 bits (55), Expect = 8.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ G+ +K KKKKKK K KKK KK K+
Sbjct: 231 KGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKRGG 265
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 27.3 bits (61), Expect = 1.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKK 32
KK K K+ +K + KKKKKK
Sbjct: 84 EVSKKAKGKRSRKNQTKKKKKK 105
Score = 27.3 bits (61), Expect = 1.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 14 KKKKKKKKKKKKKKKKKKKKK 34
KK K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 27.3 bits (61), Expect = 1.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 15 KKKKKKKKKKKKKKKKKKKKK 35
KK K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 27.3 bits (61), Expect = 1.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 16 KKKKKKKKKKKKKKKKKKKKK 36
KK K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 27.3 bits (61), Expect = 1.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 17 KKKKKKKKKKKKKKKKKKKKK 37
KK K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 27.3 bits (61), Expect = 1.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 18 KKKKKKKKKKKKKKKKKKKKK 38
KK K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 26.5 bits (59), Expect = 2.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 19 KKKKKKKKKKKKKKKKKKKKRD 40
KK K K+ +K + KKKKK+D
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKKD 106
Score = 25.0 bits (55), Expect = 7.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 21 KKKKKKKKKKKKKKKKKKRDFEQLCINYAN 50
KK K K+ +K + KKK+ + I + N
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKKDDNPIAWVN 114
>gnl|CDD|220633 pfam10214, Rrn6, RNA polymerase I-specific transcription-initiation
factor. RNA polymerase I-specific
transcription-initiation factor Rrn6 and Rrn7 represent
components of a multisubunit transcription factor
essential for the initiation of rDNA transcription by
Pol I. These proteins are found in fungi.
Length = 753
Score = 27.8 bits (62), Expect = 1.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 12 SRKKKKKKKKKKKK 25
R KKKKKKK+K
Sbjct: 737 GRSASKKKKKKKRK 750
Score = 27.8 bits (62), Expect = 1.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 10 GTSRKKKKKKKKKKKKKK 27
G S + KKKKKKK+K
Sbjct: 733 GLSGGRSASKKKKKKKRK 750
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 27.7 bits (61), Expect = 1.3
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCIN 47
D KKK + K+ KK + + + +L +N
Sbjct: 63 DENGAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVN 101
Score = 26.9 bits (59), Expect = 2.2
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
Query: 8 GDGTSRKKKKKKKKK-----------KKKKKKKKKKKKKKKKRDFEQL 44
D S+K ++ ++K K +KK +K++K KK D E
Sbjct: 106 LDKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVEDQ 153
>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane
protein. Models TIGR03110, TIGR03111, and TIGR03112
describe a three-gene system found in several
Gram-positive bacteria, where TIGR03110 (XrtG) is
distantly related to a putative transpeptidase,
exosortase (TIGR02602). This model describes a small
clade that correlates by both gene clustering and
phyletic pattern, although imperfectly, to the three
gene system. Both this narrow clade, and the larger set
of full-length homologous integral membrane proteins,
have an especially well-conserved region near the
C-terminus with an invariant tyrosine. The function is
unknown.
Length = 483
Score = 27.6 bits (62), Expect = 1.3
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
GDG + K +K K K+ KR ++
Sbjct: 314 GDGGYNAEDVLATLSLPTKAEKNKYSIKEIKRRLKEK 350
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs, all of which are expressed
during embryonic and early development in the nervous
system but with different localization and timing.
srGAPs contain an N-terminal F-BAR domain, a Rho GAP
domain, and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 241
Score = 27.3 bits (61), Expect = 1.3
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQ 59
+ + KK +K+ +K++ K + K K K R+ L + AN + YF Q
Sbjct: 173 ERSRSSKKIEKEVEKRQAKYSEAKLKCTKARNEYLLNLAAANATIHKYFVQ 223
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 27.4 bits (61), Expect = 1.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
RKKKK + K +K+ K+K +KKK
Sbjct: 1 VRKKKKNRSSNYKVNRKRLKRKDRKKK 27
Score = 25.9 bits (57), Expect = 4.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+KKKK + K +K+ K+K +KK+
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKI 28
Score = 25.1 bits (55), Expect = 6.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
+KKK + K +K+ K+K +KKK
Sbjct: 3 KKKKNRSSNYKVNRKRLKRKDRKKKI 28
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 27.8 bits (62), Expect = 1.4
Identities = 13/25 (52%), Positives = 22/25 (88%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKKR 39
++K KKKKKK+KKK+++ K+++K R
Sbjct: 742 EEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 26.6 bits (59), Expect = 2.9
Identities = 13/27 (48%), Positives = 23/27 (85%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
S ++K KKKKKK+KKK+++ K+++K +
Sbjct: 740 SVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 26.6 bits (59), Expect = 3.3
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
S ++K KKKKKK+KKK+++ K+++K E
Sbjct: 737 ISDSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
Score = 26.2 bits (58), Expect = 3.9
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKK 36
D K KKKKKK+KKK+++ K+++K +
Sbjct: 739 DSVEEKTKKKKKKEKKKEEEYKREEKAR 766
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional.
Length = 145
Score = 27.0 bits (60), Expect = 1.5
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
KK KKK KK K KK K KK+K R
Sbjct: 2 APAKKAKKKAKKAAKAAKKGVKVKKRKVR 30
Score = 25.4 bits (56), Expect = 5.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ KKK KK K KK K KK+K +
Sbjct: 3 PAKKAKKKAKKAAKAAKKGVKVKKRKVRTS 32
Score = 25.0 bits (55), Expect = 6.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDF 41
KKK KK K KK K KK+K + F
Sbjct: 4 AKKAKKKAKKAAKAAKKGVKVKKRKVRTSVRF 35
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 27.3 bits (61), Expect = 1.5
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
R K KKKKKKKKK KK K KK +Q
Sbjct: 249 RANPSKVKKKKKKKKKVVHKKYKTKKLTGKQ 279
Score = 26.2 bits (58), Expect = 3.8
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+KKKKKKKK KK K KK K++K
Sbjct: 256 KKKKKKKKKVVHKKYKTKKLTGKQRKA 282
Score = 26.2 bits (58), Expect = 4.1
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
S+ KKKKKKKKK KK K KK K+R
Sbjct: 253 SKVKKKKKKKKKVVHKKYKTKKLTGKQR 280
Score = 25.8 bits (57), Expect = 4.9
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQ 54
KKKKKKKKK KK K KK K+++ + E LQ
Sbjct: 255 VKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQ 296
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 27.3 bits (61), Expect = 1.5
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 16 KKKKKKKKKKKKKKKKKKKKKKKRDFE 42
+KKK++KK+++K+ K+ + D +
Sbjct: 177 HSSDSEKKKQRKKQRRKRSKELREDDD 203
Score = 26.5 bits (59), Expect = 2.5
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
G +KKK++KK+++K+ K+ ++ D ++
Sbjct: 173 GVPGHSSDSEKKKQRKKQRRKRSKELREDDDDDE 206
Score = 26.5 bits (59), Expect = 2.6
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
G GT +KKK++KK+++K+ ++ +
Sbjct: 165 GGGTWGLVGVPGHSSDSEKKKQRKKQRRKRSKELRE 200
Score = 25.4 bits (56), Expect = 7.4
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
G +KKK++KK+++K+ K+ ++ D +
Sbjct: 173 GVPGHSSDSEKKKQRKKQRRKRSKELREDDDDDED 207
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 27.5 bits (61), Expect = 1.6
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
+ KK ++ KK KK KK + E
Sbjct: 1182 LQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESE 1218
Score = 26.7 bits (59), Expect = 3.0
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
L+ KK ++ KK KK KK
Sbjct: 1180 EKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASES 1217
Score = 26.7 bits (59), Expect = 3.1
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
R+K ++ + + KK ++ KK
Sbjct: 1179 REKLQRAAARGESGAAKKVSRQAPKK 1204
Score = 26.0 bits (57), Expect = 4.5
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANE 51
G S KK ++ KK KK KK + E+ + A E
Sbjct: 1189 GESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAME 1230
>gnl|CDD|206332 pfam14163, SieB, Superinfection exclusion protein B. This family
includes superinfection exclusion proteins. These
proteins prevent the growth of superinfecting phage
which are insensitive to repression. It aborts lytic
development of superinfecting phage.
Length = 151
Score = 26.8 bits (60), Expect = 1.6
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 20 KKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQH 60
K+K +KK+++++ +KK K E+ + L+ + Q
Sbjct: 60 KEKYQKKREQERIEKKLKSLTPEEKAL------LREFLRQG 94
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The
function is unclear.
Length = 151
Score = 26.9 bits (59), Expect = 1.8
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
A R G ++ +K KKKK+K +KK K KKK++K
Sbjct: 11 AKQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEK 46
Score = 25.3 bits (55), Expect = 6.8
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
S K + +K KKKK+K +KK K KKK +
Sbjct: 17 SGKTQSQKSDKKKKEKVSEKKGKSKKKEE 45
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 27.0 bits (60), Expect = 1.8
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+++++ KKKK+ K K K+ KKKKK+D
Sbjct: 79 QREERLKKKKRVKTKAYKEPTKKKKKKD 106
Score = 27.0 bits (60), Expect = 2.1
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
R KKKK+ K K K+ KKKKKK
Sbjct: 83 RLKKKKRVKTKAYKEPTKKKKKKDPTAA 110
Score = 25.8 bits (57), Expect = 4.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 5 LRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
L+ + +KK+ K K K+ KKKKKK K
Sbjct: 78 LQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSP 113
Score = 25.0 bits (55), Expect = 9.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+KKKKK K K + KKK +R
Sbjct: 100 KKKKKKDPTAAKSPKAAAPRPKKKSER 126
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the
parasitophorous vacuole membrane. Members have an
initial hydrophobic, Phe/Tyr-rich, stretch long enough
to span the membrane, a highly charged region rich in
Lys, a second putative transmembrane region and a
second highly charged, low complexity sequence region.
Some members have up to 100 residues of additional
C-terminal sequence. These genes have been shown to be
found in the sub-telomeric regions of both Plasmodium
falciparum and P. yoelii chromosomes.
Length = 82
Score = 26.1 bits (58), Expect = 1.8
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKK 38
KKKK KK KK +KKKK KKK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 25.7 bits (57), Expect = 2.7
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKK 36
N + ++KKK KK KK +KKKK KKK
Sbjct: 24 NNNVVAKKKKLKKLKKIDDDLEKKKKNKKK 53
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 27.3 bits (61), Expect = 1.8
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCI 46
+ +KK+ K ++K KK++KK+K K+ + E++ I
Sbjct: 645 NWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKERIEI 682
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region.
This domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 26.4 bits (59), Expect = 1.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
SRKKK+KK+ K + K+ KK ++++
Sbjct: 60 SRKKKEKKEVKAESKRYNAKKLTLEQRKA 88
Score = 26.0 bits (58), Expect = 2.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 19 KKKKKKKKKKKKKKKKKKKKRDFEQ 43
+KKK+KK+ K + K+ KK EQ
Sbjct: 61 RKKKEKKEVKAESKRYNAKKLTLEQ 85
Score = 24.8 bits (55), Expect = 5.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKK 37
R +KKK+KK+ K + K+ KK
Sbjct: 56 RADPSRKKKEKKEVKAESKRYNAKK 80
>gnl|CDD|205219 pfam13038, DUF3899, Domain of unknown function (DUF3899).
Putative Tryptophanyl-tRNA synthetase.
Length = 92
Score = 26.1 bits (58), Expect = 2.0
Identities = 5/40 (12%), Positives = 13/40 (32%)
Query: 23 KKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQHVF 62
++ ++ +KK+K + E + F
Sbjct: 35 RRLFRQLVEKKEKDSIEEDEFANDKKVKKKKYSVFTWTAP 74
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 27.0 bits (60), Expect = 2.0
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 7 NGDGTSRKKKKKKKKKKKKKK---KKKKKKKKKKKRDF 41
G G ++K K KKK+KKKK+ + K+KKK+K
Sbjct: 5 QGQGNNQKDKNKKKEKKKKESPPPPHEIKRKKKRKGPD 42
Score = 25.5 bits (56), Expect = 6.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 1 MFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
M G+ K KKK+KKKK+ + K+KKK++
Sbjct: 1 MGNAQGQGNNQKDKNKKKEKKKKESPPPPHEIKRKKKRK 39
>gnl|CDD|220267 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein is a
heteromeric structure-specific endonuclease found in
fungi. Slx4 with Slx1 acts as a nuclease on branched
DNA substrates, particularly simple-Y, 5'-flap, or
replication fork structures by cleaving the strand
bearing the 5' non-homologous arm at the branch
junction and thus generating ligatable nicked products
from 5'-flap or replication fork substrates.
Length = 627
Score = 27.2 bits (60), Expect = 2.0
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 4 NLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+G+ + ++ KKKK KK K +K+ K+K KK K
Sbjct: 60 QANSGNVSGKRVPKKKKIKKPKLRKRTKRKNKKIK 94
Score = 26.9 bits (59), Expect = 2.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCIN 47
S K+ KKKK KK K +K+ K+K KK +
Sbjct: 65 NVSGKRVPKKKKIKKPKLRKRTKRKNKKIKSLTAFNEE 102
Score = 25.3 bits (55), Expect = 8.5
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKK 36
AN N G KKKK KK K +K+ K+K KK K
Sbjct: 61 ANSGNVSGKRVPKKKKIKKPKLRKRTKRKNKKIK 94
>gnl|CDD|153308 cd07624, BAR_SNX7_30, The Bin/Amphiphysin/Rvs (BAR) domain of
Sorting Nexins 7 and 30. BAR domains are dimerization,
lipid binding and curvature sensing modules found in
many different proteins with diverse functions. Sorting
nexins (SNXs) are Phox homology (PX) domain containing
proteins that are involved in regulating membrane
traffic and protein sorting in the endosomal system.
SNXs differ from each other in their lipid-binding
specificity, subcellular localization and specific
function in the endocytic pathway. A subset of SNXs also
contain BAR domains. The PX-BAR structural unit
determines the specific membrane targeting of SNXs. This
subfamily consists of SNX7, SNX30, and similar proteins.
The specific functions of SNX7 and SNX30 have not been
elucidated. BAR domains form dimers that bind to
membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
Length = 200
Score = 27.0 bits (60), Expect = 2.1
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 34 KKKKKRDFEQLCINYANEHLQYY 56
K+ K++D +++ ++ A + +QYY
Sbjct: 165 KQNKRQDLKKILLDMAEKQIQYY 187
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 26.8 bits (60), Expect = 2.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 1 MFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 37
L+ ++K+KKK+KKK KKKK K + K
Sbjct: 384 ELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGK 420
Score = 26.8 bits (60), Expect = 2.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
++K+KKK+KKK KKKK K + + ++ L
Sbjct: 393 VGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVL 425
Score = 25.2 bits (56), Expect = 7.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
++K+KKK+KKK KKKK K + K
Sbjct: 392 PVGVAPEQKEKKKEKKKNKKKKYKVPRGK 420
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 26.5 bits (59), Expect = 2.4
Identities = 9/27 (33%), Positives = 22/27 (81%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
R K++ +K+K+ +K ++KK K+++K++
Sbjct: 102 RTKERAEKEKRTRKNREKKFKRRQKEK 128
Score = 25.7 bits (57), Expect = 3.6
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
R ++++ K++ +K+K+ +K ++KK KR
Sbjct: 97 RLRRERTKERAEKEKRTRKNREKKFKR 123
Score = 25.3 bits (56), Expect = 4.9
Identities = 9/31 (29%), Positives = 23/31 (74%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
++++ K++ +K+K+ +K ++KK K+R E+
Sbjct: 98 LRRERTKERAEKEKRTRKNREKKFKRRQKEK 128
Score = 25.3 bits (56), Expect = 5.8
Identities = 10/36 (27%), Positives = 26/36 (72%)
Query: 4 NLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
LR ++++ +K+K+ +K ++KK K+++K+K++
Sbjct: 95 ALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
>gnl|CDD|177283 PHA00451, PHA00451, protein kinase.
Length = 362
Score = 26.7 bits (59), Expect = 2.5
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKK 35
R+ +GT + +K K++K+ +K + + K
Sbjct: 256 RDPNGTFQVARKAAMKRRKRNRKLRARNAK 285
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 26.5 bits (59), Expect = 2.6
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 5 LRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
L++ +K + K+KKK+KKK++KKKK+ +R E++
Sbjct: 313 LKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERI 352
>gnl|CDD|235015 PRK02234, recU, Holliday junction-specific endonuclease;
Reviewed.
Length = 195
Score = 26.4 bits (59), Expect = 2.8
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 19 KKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQHV 61
KK + +K KKKK + E+ IN N YY + +
Sbjct: 7 KKSSQVQKTKKKKVTYANRGMSLEKD-INETN---DYYLSNGI 45
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association
with pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 25.7 bits (57), Expect = 2.9
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
S++ ++KKKKKKK KKK K+ +KK++
Sbjct: 30 SKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQ 63
Score = 25.3 bits (56), Expect = 4.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDF 41
D K ++ ++ ++KKKKKKK KKK +++
Sbjct: 23 DDEQIDASKVRRISQRNRRKKKKKKKLKKKSKEW 56
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 26.4 bits (58), Expect = 3.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKK 33
K KKK K KK KKK+ K+
Sbjct: 206 HEKDKYSYKKKLKSKKLKKKQAKR 229
Score = 26.4 bits (58), Expect = 3.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKRD 40
K K KKK K KK KKK+ KR+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKRE 230
Score = 26.0 bits (57), Expect = 4.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKK 35
K K KKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
Score = 26.0 bits (57), Expect = 4.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKK 36
K K KKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
Score = 26.0 bits (57), Expect = 4.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 16 KKKKKKKKKKKKKKKKKKKKKK 37
K K KKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
Score = 26.0 bits (57), Expect = 4.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 17 KKKKKKKKKKKKKKKKKKKKKK 38
K K KKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
Score = 25.3 bits (55), Expect = 6.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKK 30
KKK K KK KKK+ K+
Sbjct: 207 EKDKYSYKKKLKSKKLKKKQAKR 229
Score = 25.3 bits (55), Expect = 7.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKK 29
D S KKK K KK KKK+ K+
Sbjct: 207 EKDKYSYKKKLKSKKLKKKQAKR 229
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 26.7 bits (60), Expect = 3.0
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
+ +K+ K +KK+KKKKK+K+K+ + +
Sbjct: 610 IEARKRLNKANEKKEKKKKKQKEKQEELK 638
Score = 25.9 bits (58), Expect = 5.0
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 5 LRNGDGTSRKKK--KKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
L+ G S K + +K+ K +KK+KKKKK+K E+L
Sbjct: 596 LQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEEL 637
Score = 25.6 bits (57), Expect = 6.8
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+RK+ K +KK+KKKKK+K+K+++ K
Sbjct: 612 ARKRLNKANEKKEKKKKKQKEKQEELK 638
Score = 25.2 bits (56), Expect = 8.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKR 39
+K +K KKKKKKK K K K R
Sbjct: 680 EKIQKPKKKKKKKPKTVKPKPR 701
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 26.5 bits (59), Expect = 3.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
N + K + ++++ KKKKKKKKKK KK
Sbjct: 163 NPTEEEVELLKARLEEERAKKKKKKKKKKTKK 194
Score = 26.2 bits (58), Expect = 3.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ KKKKKKKKKK KK +
Sbjct: 178 EERAKKKKKKKKKKTKKNNATGSSAEA 204
Score = 26.2 bits (58), Expect = 3.9
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKKRD 40
K + ++++ KKKKKKKKKK KK
Sbjct: 172 LKARLEEERAKKKKKKKKKKTKKNNA 197
Score = 25.8 bits (57), Expect = 5.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKK 38
K + ++++ KKKKKKKKKK KK
Sbjct: 173 KARLEEERAKKKKKKKKKKTKKNNA 197
Score = 25.4 bits (56), Expect = 6.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
++++ KKKKKKKKKK KK +
Sbjct: 177 EEERAKKKKKKKKKKTKKNNATGSSAEATV 206
Score = 25.4 bits (56), Expect = 6.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ + ++++ KKKKKKKKKK KK
Sbjct: 173 KARLEEERAKKKKKKKKKKTKKNNAT 198
Score = 25.0 bits (55), Expect = 9.1
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ K + ++++ KKKKKKKKKK K++
Sbjct: 169 VELLKARLEEERAKKKKKKKKKKTKKN 195
Score = 25.0 bits (55), Expect = 9.9
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
R KKKKKKKKKK KK +
Sbjct: 180 RAKKKKKKKKKKTKKNNATGSSAEAT 205
>gnl|CDD|233942 TIGR02589, cas_Csd2, CRISPR-associated protein Cas7/Csd2, subtype
I-C/DVULG. This model represents one of two closely
related CRISPR-associated proteins that belong to the
larger family of TIGR01595. Members are the Csd2 protein
of the Dvulg subtype of CRISPR/cas system. CRISPR stands
for Clustered Regularly Interspaced Short Palindromic
Repeats. The related model is TIGR02590, the Csh2
protein of the Hmari CRISPR subtype [Mobile and
extrachromosomal element functions, Other].
Length = 284
Score = 26.3 bits (58), Expect = 3.1
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINY 48
R D K+ K + KK+ KK + K+ + + +C N+
Sbjct: 61 EKARLNDTIKSLYKRLDIKLETAKKRNKKGRGKEVEEFRKWMCANW 106
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 26.5 bits (58), Expect = 3.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 19 KKKKKKKKKKKKKKKKKKKKRDFEQ 43
K KK KKKK KKK+ K + EQ
Sbjct: 122 KDKKNKKKKSAKKKEAHKAQIPPEQ 146
Score = 26.1 bits (57), Expect = 5.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 12 SRKKKKKKKKKKKKKKKKKK 31
S K KK KKKK KKK+ K
Sbjct: 120 SWKDKKNKKKKSAKKKEAHK 139
Score = 25.7 bits (56), Expect = 6.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKK 38
K + + K KK KKKK KKK+ K
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHK 139
Score = 25.7 bits (56), Expect = 7.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKK 35
+R + K KK KKKK KKK+ K
Sbjct: 116 NRVESWKDKKNKKKKSAKKKEAHK 139
Score = 25.3 bits (55), Expect = 8.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
K KK KKKK KKK+ K + ++ E+
Sbjct: 122 KDKKNKKKKSAKKKEAHKAQIPPEQQMEE 150
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many
hypothetical proteins.
Length = 98
Score = 25.9 bits (57), Expect = 3.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
+ +KKKK+ K + K KK +KK KKK +F
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFP 54
Score = 25.5 bits (56), Expect = 4.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
++KKKKK+ K + K KK +KK K+ E
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEF 53
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 26.2 bits (58), Expect = 3.2
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
G + KK K KK KK KK K
Sbjct: 259 GGPGKKPAKKATAAKAKKTTAKKAAAKKAAKT 290
Score = 25.8 bits (57), Expect = 4.4
Identities = 13/33 (39%), Positives = 13/33 (39%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
R G KK KK K KK KK KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKA 287
Score = 25.4 bits (56), Expect = 6.2
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
++K K KK KK KK K KK
Sbjct: 265 PAKKATAAKAKKTTAKKAAAKKAAKTKK 292
Score = 25.4 bits (56), Expect = 6.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKK 37
T+ K KK KK KK K KK KK
Sbjct: 270 TAAKAKKTTAKKAAAKKAAKTKKAAKK 296
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region
covers both the Brf homology II and III regions. This
region is involved in binding TATA binding protein.
Length = 95
Score = 25.7 bits (57), Expect = 3.2
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K+ K+K + KKKKK+K KKKRD
Sbjct: 34 EKELKQKADEGNNSGKKKKKRKAKKKRD 61
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 26.4 bits (58), Expect = 3.3
Identities = 12/27 (44%), Positives = 12/27 (44%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKK 37
KK KK KK K KK KK K
Sbjct: 250 KKAKKTAKKALKKAAKAVKKAAKKAAK 276
Score = 26.0 bits (57), Expect = 4.8
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKK 38
KK KK KK K KK KK K
Sbjct: 252 AKKTAKKALKKAAKAVKKAAKKAAK 276
Score = 25.6 bits (56), Expect = 5.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
++K KK KK KK K KK KK +
Sbjct: 249 AKKAKKTAKKALKKAAKAVKKAAKKAAK 276
Score = 25.6 bits (56), Expect = 5.8
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
S+KK K KK K K KK K+
Sbjct: 223 AKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKK 254
Score = 25.6 bits (56), Expect = 6.6
Identities = 10/27 (37%), Positives = 10/27 (37%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
K K KK KKK K KK
Sbjct: 214 KASAKAKSAAKKVSKKKAAKTAVSAKK 240
Score = 25.6 bits (56), Expect = 7.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKK 36
++K KK KK K KK KK K
Sbjct: 250 KKAKKTAKKALKKAAKAVKKAAKKAAK 276
Score = 25.2 bits (55), Expect = 7.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKK 37
+ K KK KK KK KK K KK
Sbjct: 242 AKTAAKAAKKAKKTAKKALKKAAKAVKK 269
Score = 25.2 bits (55), Expect = 7.5
Identities = 10/26 (38%), Positives = 10/26 (38%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
KK K KK KK K K K
Sbjct: 261 KKAAKAVKKAAKKAAKAAAKAAKGAA 286
Score = 25.2 bits (55), Expect = 7.9
Identities = 10/28 (35%), Positives = 10/28 (35%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKK 37
KK K K KK KK KK
Sbjct: 231 AAKTAVSAKKAAKTAAKAAKKAKKTAKK 258
Score = 25.2 bits (55), Expect = 7.9
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
++ KK K K KK KK KK
Sbjct: 232 AKTAVSAKKAAKTAAKAAKKAKKTAKK 258
Score = 25.2 bits (55), Expect = 8.1
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKK 38
K KK KK KK KK K KK
Sbjct: 246 AKAAKKAKKTAKKALKKAAKAVKK 269
Score = 25.2 bits (55), Expect = 8.1
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKK 37
+ KK K K KK KKK K
Sbjct: 209 KSGAKKASAKAKSAAKKVSKKKAAKTAV 236
Score = 25.2 bits (55), Expect = 8.1
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
G + K K KK KKK K K+
Sbjct: 211 GAKKASAKAKSAAKKVSKKKAAKTAVSAKK 240
Score = 25.2 bits (55), Expect = 9.4
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ K KK KK K K K K
Sbjct: 259 ALKKAAKAVKKAAKKAAKAAAKAAKGAAK 287
Score = 24.8 bits (54), Expect = 10.0
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ K K K K K K KKK KK
Sbjct: 277 AAAKAAKGAAKATKGKAKAKKKAGKKAA 304
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 26.5 bits (58), Expect = 3.3
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
T + + K+K K+K K+ K + + E
Sbjct: 790 TIKAAARAKQKPKEKGPNDKEIKIESPSVETE 821
Score = 25.7 bits (56), Expect = 6.7
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
T+ K + K+K K+K K+ K +
Sbjct: 789 TTIKAAARAKQKPKEKGPNDKEIKIESP 816
Score = 25.3 bits (55), Expect = 7.4
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+R K+K K+K K+ K + + + +
Sbjct: 795 ARAKQKPKEKGPNDKEIKIESPSVETEGE 823
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 26.5 bits (59), Expect = 3.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKKRD 40
++KKK KK +K+ + + KKR
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRK 109
Score = 26.5 bits (59), Expect = 3.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
R+KKK KK +K+ + + KK+K
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRK 109
>gnl|CDD|197876 smart00792, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP) is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 124
Score = 26.0 bits (57), Expect = 3.7
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKK 31
S ++ +KK +KK+KK
Sbjct: 55 KKISAEEAEKKLLQKKEKKALTN 77
Score = 25.2 bits (55), Expect = 5.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
KK KK ++ +KK +KK+KK
Sbjct: 51 NKKPKKISAEEAEKKLLQKKEKKALT 76
Score = 25.2 bits (55), Expect = 6.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
G ++K KK ++ +KK +KK+KK
Sbjct: 49 GLNKKPKKISAEEAEKKLLQKKEKKALTN 77
>gnl|CDD|217162 pfam02645, DegV, Uncharacterized protein, DegV family COG1307. The
structure of this protein revealed a bound fatty-acid
molecule in a pocket between the two protein domains.
The structure indicates that this family has the
molecular function of fatty-acid binding and may play a
role in the cellular functions of fatty acid transport
or metabolism.
Length = 211
Score = 26.0 bits (58), Expect = 3.8
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 16 KKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANE 51
K + KK K+ + KK + ++ I +ANE
Sbjct: 131 KVRGGKKAAIKRLLEILLKKLAEGKGYRVAIIHANE 166
>gnl|CDD|222658 pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy.
This family includes O-antigen polysaccharide
polymerases. These enzymes link O-units via a glycosidic
linkage to form a long O-antigen. These enzymes vary in
specificity and sequence.
Length = 440
Score = 26.1 bits (58), Expect = 3.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKK 37
RKKK+KK+KKK + + ++ K +K
Sbjct: 102 GRKKKRKKEKKKNQLEYERLLKNLRK 127
Score = 25.3 bits (56), Expect = 6.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKK 38
+KKK+KK+KKK + + ++ K +K
Sbjct: 103 RKKKRKKEKKKNQLEYERLLKNLRK 127
Score = 25.3 bits (56), Expect = 8.3
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKKRDF 41
+KKK+KK+KKK + + ++ K ++
Sbjct: 103 RKKKRKKEKKKNQLEYERLLKNLRKLS 129
>gnl|CDD|188606 TIGR04091, LTA_dltB, D-alanyl-lipoteichoic acid biosynthesis
protein DltB. Members of this protein family are DltB,
part of a four-gene operon for D-alanyl-lipoteichoic
acid biosynthesis that is present in the vast majority
of low-GC Gram-positive organisms. This protein may be
involved in transport of D-alanine across the plasma
membrane [Cell envelope, Biosynthesis and degradation of
murein sacculus and peptidoglycan].
Length = 380
Score = 26.0 bits (58), Expect = 3.8
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 13 RKKKKKKKKKKKK 25
RK KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 5.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 27 KKKKKKKKKKKKRDFEQLCI 46
+K KK KK KK + + L I
Sbjct: 343 RKSKKYKKNKKNKWTKALSI 362
Score = 25.6 bits (57), Expect = 5.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 14 KKKKKKKKKKKKK 26
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 5.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 15 KKKKKKKKKKKKK 27
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 5.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 16 KKKKKKKKKKKKK 28
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 5.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 17 KKKKKKKKKKKKK 29
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 5.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 18 KKKKKKKKKKKKK 30
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 5.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 19 KKKKKKKKKKKKK 31
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 5.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 20 KKKKKKKKKKKKK 32
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 5.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 21 KKKKKKKKKKKKK 33
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 5.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 22 KKKKKKKKKKKKK 34
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 5.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 23 KKKKKKKKKKKKK 35
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 5.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 24 KKKKKKKKKKKKK 36
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 5.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 25 KKKKKKKKKKKKK 37
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 5.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 26 KKKKKKKKKKKKK 38
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 26.0 bits (58), Expect = 3.9
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
+KKKKKKKK+ + ++KKKK ++R +Q
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQ 114
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 26.3 bits (58), Expect = 3.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 16 KKKKKKKKKKKKKKKKKKKKKKKRDF 41
KKKKKKKKK K+ + KK F
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIF 34
Score = 25.1 bits (55), Expect = 8.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKK 37
KKKKKKKKK K+ + KK
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKT 32
Score = 25.1 bits (55), Expect = 8.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKK 38
KKKKKKKKK K+ + KK
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKT 32
>gnl|CDD|234043 TIGR02871, spore_ylbJ, sporulation integral membrane protein YlbJ.
Members of this protein family are found exclusively in
Firmicutes (low-GC Gram-positive bacterial) and are
known from studies in Bacillus subtilis to be part of
the sigma-E regulon. Mutation leads to a sporulation
defect, confirming that members of this protein family,
YlbJ, are sporulation proteins. This protein appears to
be universal among endospore-forming bacteria, but is
encoded by a pair ORFs distant from eash other in
Symbiobacterium thermophilum IAM14863 [Cellular
processes, Sporulation and germination].
Length = 362
Score = 26.1 bits (58), Expect = 3.9
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDF 41
R K++K+K KKKK + K K
Sbjct: 160 RFYKRRKRKILSKKKKTFHIIRLKSKFPI 188
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 26.0 bits (57), Expect = 4.1
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
S K+K+K++ + +K K+ ++KK+++KR
Sbjct: 159 HRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKR 190
Score = 25.6 bits (56), Expect = 5.5
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ + D RK+ K+K+K++ + +K K+ ++KK
Sbjct: 150 LSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKK 185
Score = 25.6 bits (56), Expect = 6.5
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
R +K+ K+K+K++ + +K K+ ++K+
Sbjct: 152 RKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQ 186
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 26.1 bits (57), Expect = 4.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 4 NLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
N + K K+K K+K K KK + K+ KR+ E+
Sbjct: 210 NTSTIKNNTNDKNKEKNKEKDKNIKKDRDGDKQTKRNSEK 249
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 26.2 bits (58), Expect = 4.5
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 9 DGTSRKKKKKKKK-KKKKKKKKKKKKKKKKKRDFEQLCINYANE 51
RK K K++ ++ + + + FE++ + E
Sbjct: 279 RAELRKSMKPKERTAIERVPMPELDPEYRAHNRFEEVNLGLTKE 322
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 26.0 bits (57), Expect = 4.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
D + +K++ ++ + +K+ KK KKK + EQL
Sbjct: 3 DESDKKQQTIDEQSQISPEKQTPNKKDKKKEEEEQL 38
>gnl|CDD|221550 pfam12366, Casc1, Cancer susceptibility candidate 1. This domain
family is found in eukaryotes, and is typically between
216 and 263 amino acids in length. Casc1 has many SNPs
associated with cancer susceptibility.
Length = 227
Score = 25.8 bits (57), Expect = 4.6
Identities = 11/56 (19%), Positives = 19/56 (33%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEY 69
+ K+ K K K + K +D +L ++L + Q Y Y
Sbjct: 79 RGYVTDIPKEYKAKPVKYLEIPKPIKDPPELPEGMFPDNLNIFAEQEAQFYIDFGY 134
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 26.0 bits (57), Expect = 4.7
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
G K KK K KKK KK KKK+ K+ K D E+
Sbjct: 141 GIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEE 174
Score = 26.0 bits (57), Expect = 5.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
G T KK K KKK KK KKK+ K+ K + +
Sbjct: 141 GIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESE 176
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 25.8 bits (57), Expect = 4.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
+ +++ + K+ K KKK KKK+K F++
Sbjct: 7 RKARQELAVQVAKQAKAKKKANKKKRKIYFKRA 39
>gnl|CDD|200594 cd10972, CE4_DAC_u3_5s, Putative catalytic NodB homology domain
of uncharacterized bacterial polysaccharide
deacetylases which consist of a 5-stranded beta/alpha
barrel. This family contains uncharacterized bacterial
polysaccharide deacetylases. Although their biological
functions remain unknown, all members of the family are
predicted to contain a conserved domain with a
5-stranded beta/alpha barrel, which is similar to the
catalytic NodB homology domain of rhizobial NodB-like
proteins, belonging to the larger carbohydrate esterase
4 (CE4) superfamily.
Length = 216
Score = 25.8 bits (57), Expect = 4.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 55 YYFNQHVFQYEQEEYNKEGIRW 76
+Y N F + Q EY ++ +RW
Sbjct: 55 FYVNPGPFGFGQPEYAEQKLRW 76
>gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase. Cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues, is the major component of wood and
thus paper, and is synthesised by plants, most algae,
some bacteria and fungi, and even some animals. The
genes that synthesise cellulose in higher plants differ
greatly from the well-characterized genes found in
Acetobacter and Agrobacterium sp. More correctly
designated as 'cellulose synthase catalytic subunits',
plant cellulose synthase (CesA) proteins are integral
membrane proteins, approximately 1,000 amino acids in
length. There are a number of highly conserved residues,
including several motifs shown to be necessary for
processive glycosyltransferase activity.
Length = 716
Score = 25.9 bits (57), Expect = 4.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 16 KKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANE 51
++KK K K KKK K+K+ + F I+ +E
Sbjct: 312 RRKKPKSASKAKKKDSKRKESEAPIFNLEDIDEGDE 347
Score = 25.1 bits (55), Expect = 9.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 10 GTSRKKKKKKKKKKKKKKKKK 30
RKK K K KKK K+K
Sbjct: 310 FGRRKKPKSASKAKKKDSKRK 330
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 25.9 bits (56), Expect = 4.9
Identities = 8/38 (21%), Positives = 24/38 (63%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYA 49
+K++ + ++ K+++ KK+K++++R + + NY
Sbjct: 1029 QEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYK 1066
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 25.9 bits (57), Expect = 4.9
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 37
+S + ++ KKK++ + KKKK+ ++ K
Sbjct: 79 ELSASSLEAEQAKKKEEAEAKKKKEMEELKA 109
Score = 25.1 bits (55), Expect = 7.8
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 19 KKKKKKKKKKKKKKKKKKKKRDFEQL 44
+ ++ KKK++ + KKK++ E+L
Sbjct: 82 ASSLEAEQAKKKEEAEAKKKKEMEEL 107
>gnl|CDD|240309 PTZ00189, PTZ00189, 60S ribosomal protein L21; Provisional.
Length = 160
Score = 25.7 bits (57), Expect = 4.9
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
K+ K + KKK + K++
Sbjct: 106 LKRVAANDAIKAEAKKKGELPSTKRQ 131
Score = 25.0 bits (55), Expect = 7.6
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
K+ K + KKK + KR Q
Sbjct: 106 LKRVAANDAIKAEAKKKGELPSTKRQPAQ 134
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 25.7 bits (57), Expect = 5.0
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKKRD 40
+++K+KKK K++KK K++K+K +
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLE 120
Score = 25.3 bits (56), Expect = 6.8
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKRDFEQLCINYA 49
+++K+KKK K++KK K++++ + Y
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEPYGYC 126
Score = 25.3 bits (56), Expect = 7.6
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDF 41
++K+KKK K++KK K++K+K + +
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEPY 123
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 26.0 bits (58), Expect = 5.2
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDF 41
G+ K KKK+K++ ++ K+ DF
Sbjct: 147 GEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDF 180
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 25.9 bits (57), Expect = 5.2
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
+KK KKK+ KK K K + E
Sbjct: 607 LKKKALSDGGKKKQGKKAGGGGKSKAAAERE 637
>gnl|CDD|222242 pfam13584, BatD, Oxygen tolerance. This family of proteins carries
up to three membrane spanning regions and is involved in
tolerance to oxygen in in Bacteroides spp.
Length = 488
Score = 25.7 bits (57), Expect = 5.2
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCIN 47
RK++ + + KK K KK+ ++ ++
Sbjct: 450 RKRRARNADVAGNRTKKANKLAKKRLKEAKKALAG 484
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 25.9 bits (56), Expect = 5.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
KKKKKKKKK K K++ K + E++
Sbjct: 103 DDTPSKKKKKKKKKGWFWAKSKQESKTIETEEI 135
Score = 25.9 bits (56), Expect = 5.6
Identities = 15/54 (27%), Positives = 21/54 (38%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQHVF 62
D + KKKKKKKKK K K++ + E I + +F
Sbjct: 98 DNITDDDTPSKKKKKKKKKGWFWAKSKQESKTIETEEIIDVGASVNQANETRLF 151
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 25.7 bits (57), Expect = 5.6
Identities = 9/36 (25%), Positives = 24/36 (66%), Gaps = 9/36 (25%)
Query: 13 RKKKKKKKKKKKK---------KKKKKKKKKKKKKR 39
+K++KKK++++ K +K ++K++KK+ ++
Sbjct: 287 KKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap
is involved in recombination. Rap (recombination adept
with plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 25.4 bits (56), Expect = 5.6
Identities = 8/30 (26%), Positives = 21/30 (70%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
++KK+K + + ++++ K +K+K K + D+
Sbjct: 40 QEKKRKAEAQAERRELKARKEKLKTRSDWL 69
>gnl|CDD|193409 pfam12936, Kri1_C, KRI1-like family C-terminal. The yeast member
of this family (Kri1p) is found to be required for 40S
ribosome biogenesis in the nucleolus. This is the
C-terminal domain of the family.
Length = 93
Score = 24.9 bits (55), Expect = 5.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
R K++++K KKK KK + ++ KKK
Sbjct: 67 RDKEERRKDKKKYGKKARLREWKKKVF 93
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 25.8 bits (58), Expect = 6.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 27 KKKKKKKKKKKKRDFEQLCINYANE 51
KK KK KK +F + C YA E
Sbjct: 108 KKLGKKGKKLSAAEFRKKCREYALE 132
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 25.5 bits (57), Expect = 6.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKRD 40
KK +K +K KKKKK++K +D
Sbjct: 192 KKLLEKPEKPKKKKKRRKGFSKD 214
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 25.5 bits (56), Expect = 6.2
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKK 28
GD +S KK KK KKKKKKK+
Sbjct: 196 KGDKSSAKKDKKSKKKKKKKRS 217
Score = 25.1 bits (55), Expect = 8.2
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 19 KKKKKKKKKKKKKKKKKKKKRD 40
K K KK KK KKKKKKKR
Sbjct: 196 KGDKSSAKKDKKSKKKKKKKRS 217
>gnl|CDD|180007 PRK05309, PRK05309, 30S ribosomal protein S11; Validated.
Length = 128
Score = 25.1 bits (56), Expect = 6.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 14 KKKKKKKKKKKKK 26
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.1 bits (56), Expect = 6.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 15 KKKKKKKKKKKKK 27
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.1 bits (56), Expect = 6.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 16 KKKKKKKKKKKKK 28
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.1 bits (56), Expect = 6.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 17 KKKKKKKKKKKKK 29
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.1 bits (56), Expect = 6.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 18 KKKKKKKKKKKKK 30
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.1 bits (56), Expect = 6.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 19 KKKKKKKKKKKKK 31
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.1 bits (56), Expect = 6.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 20 KKKKKKKKKKKKK 32
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.1 bits (56), Expect = 6.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 21 KKKKKKKKKKKKK 33
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.1 bits (56), Expect = 6.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 22 KKKKKKKKKKKKK 34
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.1 bits (56), Expect = 6.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 23 KKKKKKKKKKKKK 35
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.1 bits (56), Expect = 6.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 24 KKKKKKKKKKKKK 36
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.1 bits (56), Expect = 6.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 25 KKKKKKKKKKKKK 37
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.1 bits (56), Expect = 6.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 26 KKKKKKKKKKKKK 38
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
>gnl|CDD|151885 pfam11446, DUF2897, Protein of unknown function (DUF2897). This
is a bacterial family of uncharacterized proteins.
Length = 55
Score = 24.1 bits (53), Expect = 6.4
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+++ K + K+KKKK K+ ++ K D
Sbjct: 26 SAKMKFPQFDKQKKKKAKRNAEQDAKNSAD 55
>gnl|CDD|234874 PRK00955, PRK00955, hypothetical protein; Provisional.
Length = 620
Score = 25.7 bits (57), Expect = 6.9
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKK 35
+ S KK KK+KKK+KK
Sbjct: 591 KKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 25.3 bits (56), Expect = 8.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+KK KK KK+KKK+K+
Sbjct: 594 KKKSNKKNNNNNYSSNNSKKRKKKRKK 620
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 25.4 bits (55), Expect = 7.0
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQ 54
++ KKKK KK+K K+ K ++ L + N+ LQ
Sbjct: 37 SAVSKKKKPTVKKEKPKQSSNNLTLGKNKENFHLEKGFGNKQLQ 80
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 25.5 bits (57), Expect = 7.1
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 16 KKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
KK+ + KK+ + K++ K + +FE+
Sbjct: 48 KKEAEAIKKEALLEAKEEIHKLRNEFEK 75
>gnl|CDD|215525 PLN02972, PLN02972, Histidyl-tRNA synthetase.
Length = 763
Score = 25.6 bits (56), Expect = 7.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 2 FANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKK 36
FA L G+ + + + + + K KK KK KKKK
Sbjct: 224 FAVLEGGELIEKPQAEAENEAGKSDKKDKKSKKKK 258
>gnl|CDD|240334 PTZ00258, PTZ00258, GTP-binding protein; Provisional.
Length = 390
Score = 25.3 bits (56), Expect = 7.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 17 KKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQ 59
K+ + KK+KKKKKKK++K + D + + + E
Sbjct: 161 KRLDELTKKRKKKKKKKEEKVELDVLKKVLEWLEEGKPVRDGD 203
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56
family). Protein phosphatase 2A (PP2A) is a major
intracellular protein phosphatase that regulates
multiple aspects of cell growth and metabolism. The
ability of this widely distributed heterotrimeric enzyme
to act on a diverse array of substrates is largely
controlled by the nature of its regulatory B subunit.
There are multiple families of B subunits (See also
pfam01240), this family is called the B56 family.
Length = 405
Score = 25.3 bits (56), Expect = 7.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKK 35
D K K+K+ K+KKK+KK+KK +
Sbjct: 373 DECGNKYKEKEAKEKKKEKKRKKTWAR 399
Score = 24.9 bits (55), Expect = 9.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 5 LRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
L D + K K+K+ K+KKK+KK+KK +
Sbjct: 364 LMEIDPDLFDECGNKYKEKEAKEKKKEKKRKKTWARIAEA 403
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 25.1 bits (55), Expect = 7.6
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ KKK+KK + + KK KK+++
Sbjct: 76 QTHKKKRKKSRHVSSRSAKKISAKKRRRS 104
>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional.
Length = 132
Score = 25.0 bits (55), Expect = 7.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
RK +K+ K ++KK + K+K K KK+
Sbjct: 104 AGRKARKELKNRRKKVRGKEKTKVSGKKK 132
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 25.1 bits (55), Expect = 7.9
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 37
A + + +KK+K++ + K+K++K ++KK
Sbjct: 400 AKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 25.1 bits (55), Expect = 8.3
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKK 37
+ ++ K++ +KK+K KKK +K+K
Sbjct: 343 EDEDDEESKEEVEKKQKVKKKPRKRK 368
Score = 25.1 bits (55), Expect = 8.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
D + ++ K++ +KK+K KKK +K+K
Sbjct: 339 DEDDEDEDDEESKEEVEKKQKVKKKPRKRKV 369
Score = 25.1 bits (55), Expect = 9.1
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKK 38
++ K++ +KK+K KKK +K+K
Sbjct: 346 DDEESKEEVEKKQKVKKKPRKRKVN 370
>gnl|CDD|220149 pfam09234, DUF1963, Domain of unknown function (DUF1963). This
domain is found in a set of hypothetical bacterial
proteins. Its exact function has not, as yet, been
described.
Length = 221
Score = 25.0 bits (55), Expect = 8.4
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 52 HLQYYFNQHVFQYEQEEYNKEGIRWRHIE-FSDNTLCLQLVE 92
LQ++ + + ++ G R + E ++ L L+E
Sbjct: 47 ILQFFIDLDDDDWGDSPEDQTGFRVIYFEDIIEDLLPKDLIE 88
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.
Length = 631
Score = 25.1 bits (56), Expect = 8.5
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ + + + KK K+KKK K D
Sbjct: 379 AAQARLRAAKKVKRKKKTSGPALPGKLAD 407
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 24.5 bits (54), Expect = 8.7
Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 4/32 (12%)
Query: 13 RKKKKKKKKKKK----KKKKKKKKKKKKKKRD 40
+++KKKKKKK + +KK+KK+ +++K D
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKAD 69
>gnl|CDD|217301 pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated
initially from a Japanese patient with hepatitis of
unknown aetiology, has since been found to infect both
healthy and diseased individuals and numerous prevalence
studies have raised questions about its role in
unexplained hepatitis. ORF1 is a large 750 residue
protein. The N-terminal half of this protein corresponds
to the capsid protein.
Length = 525
Score = 25.3 bits (56), Expect = 8.8
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKK 35
K K K + K KK K K
Sbjct: 188 AKHKILIPSLKTRPKGKKYVKIK 210
>gnl|CDD|163641 cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related
proteins, metallophosphatase domain. YbbF/LpxH is an
Escherichia coli UDP-2,3-diacylglucosamine hydrolase
thought to catalyze the fourth step of lipid A
biosynthesis, in which a precursor
UDP-2,3-diacylglucosamine is hydrolyzed to yield
2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs
to the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 217
Score = 25.1 bits (55), Expect = 9.0
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEH 52
R+ + + KKK KK FE+ A
Sbjct: 149 RRGIAGGLRWSSRYLKKKVKKAVAIIDVFEEAVARLARRK 188
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated.
Length = 862
Score = 25.0 bits (55), Expect = 9.2
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ K +K KK KK KK +K
Sbjct: 830 ATAAAATKAEKAAAKKAPAKKTAAKKTAARK 860
>gnl|CDD|234941 PRK01315, PRK01315, putative inner membrane protein translocase
component YidC; Provisional.
Length = 329
Score = 25.1 bits (55), Expect = 9.6
Identities = 4/35 (11%), Positives = 15/35 (42%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 37
K++ ++++ K++ + K++K
Sbjct: 294 VAQTTEVREQTKRQTVQRQQPKRQSRAKRQKGGAA 328
>gnl|CDD|218367 pfam04991, LicD, LicD family. The LICD family of proteins show
high sequence similarity and are involved in
phosphorylcholine metabolism. There is evidence to show
that LicD2 mutants have a reduced ability to take up
choline, have decreased ability to adhere to host cells
and are less virulent. These proteins are part of the
nucleotidyltransferase superfamily.
Length = 184
Score = 24.7 bits (54), Expect = 9.9
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQHVFQYEQ 66
K K K+ K K KK + KK + Y + Y N+H + ++
Sbjct: 104 NYLIKFKLKEIKNSKLYKKIENLIKKYSLKS--SKYVGFNDLSYVNKHFYPLDE 155
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.387
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,482,583
Number of extensions: 490655
Number of successful extensions: 13894
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8162
Number of HSP's successfully gapped: 2330
Length of query: 107
Length of database: 10,937,602
Length adjustment: 72
Effective length of query: 35
Effective length of database: 7,744,114
Effective search space: 271043990
Effective search space used: 271043990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.2 bits)