RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16447
(107 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 122 bits (308), Expect = 5e-34
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 41 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 100
FEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+E + G+L
Sbjct: 464 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 523
Query: 101 VLDDQAK 107
+LD++ +
Sbjct: 524 ILDEENR 530
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 120 bits (303), Expect = 2e-33
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 41 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 100
FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 398 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 457
Query: 101 VLDDQ 105
+LD+
Sbjct: 458 LLDEA 462
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 115 bits (290), Expect = 1e-31
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 41 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 100
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507
Query: 101 VLDDQ 105
+LD++
Sbjct: 508 LLDEE 512
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 110 bits (276), Expect = 1e-29
Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 41 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 98
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 99 LCVLDDQ 105
L +LD+Q
Sbjct: 526 LALLDEQ 532
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 109 bits (274), Expect = 2e-29
Identities = 35/66 (53%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 41 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 99
FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E KP G++
Sbjct: 473 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGIM 531
Query: 100 CVLDDQ 105
+L+++
Sbjct: 532 SILEEE 537
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 108 bits (272), Expect = 3e-29
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 41 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 100
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507
Query: 101 VLDDQ 105
+LD++
Sbjct: 508 LLDEE 512
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 108 bits (271), Expect = 5e-29
Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 41 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 99
FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G+L
Sbjct: 472 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGIL 530
Query: 100 CVLDDQ 105
+L+++
Sbjct: 531 SILEEE 536
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 104 bits (261), Expect = 1e-27
Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 41 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPNG 97
FEQLCINY NE LQ FN +F EQEEY +EGI W ++F D C+ L+E P G
Sbjct: 445 FEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPG 504
Query: 98 LLCVLDDQ 105
LL +LD++
Sbjct: 505 LLALLDEE 512
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 102 bits (257), Expect = 3e-27
Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 41 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 98
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 99 LCVLDDQ 105
L +LD+Q
Sbjct: 526 LALLDEQ 532
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 95.7 bits (238), Expect = 1e-24
Identities = 35/70 (50%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 41 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK--PNG 97
FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P G
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 535
Query: 98 LLCVLDDQAK 107
+L +LD++
Sbjct: 536 VLALLDEECW 545
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics;
5.00A {Barmah forest virus}
Length = 253
Score = 32.7 bits (74), Expect = 0.012
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ K KK +K KK +KKK K KR
Sbjct: 68 KTPPPKPKKTQKPKKPTQKKKSKPGKR 94
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 31.2 bits (70), Expect = 0.027
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDF 41
TS K KK K +K K KKKK+K+K +
Sbjct: 5 TSGKAAKKAGKAQKNITKTDKKKKRKRKESY 35
Score = 28.9 bits (64), Expect = 0.18
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K K KK K +K K KKKKR
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRK 30
Score = 28.5 bits (63), Expect = 0.22
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
K KK K +K K KKKK+KR
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRKR 31
Score = 28.5 bits (63), Expect = 0.24
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
+ K KK K +K K KKKK++ E
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 27.4 bits (60), Expect = 0.63
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
K K KK K +K K KKK+
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKK 28
Score = 27.0 bits (59), Expect = 0.95
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKK 37
+ + KK K +K K KKKK+K+K
Sbjct: 5 TSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 25.8 bits (56), Expect = 2.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKK 35
G + KK K +K K KKKK+K+K
Sbjct: 5 TSGKAAKKAGKAQKNITKTDKKKKRKRK 32
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 31.8 bits (72), Expect = 0.030
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKK 36
R+ D KKKKKKKKK+ K
Sbjct: 81 RDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 31.4 bits (71), Expect = 0.040
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
D KKKKKKKKK+ K
Sbjct: 80 ERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 31.4 bits (71), Expect = 0.042
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
D + + KKKKKKKKK+ Q
Sbjct: 78 DKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQ 112
Score = 30.3 bits (68), Expect = 0.084
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ L + + + KKKKKKKKK+
Sbjct: 74 SALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGP 109
Score = 29.5 bits (66), Expect = 0.16
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 7 NGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ R + + KKKKKKKKKR
Sbjct: 75 ALEDKERDEDDEDGDGDGDGATGKKKKKKKKKR 107
Score = 26.8 bits (59), Expect = 1.5
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
L +++ + + KKKKKKK
Sbjct: 69 RQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKK 104
Score = 26.8 bits (59), Expect = 1.6
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
R+ + + + KKKKKKKK+
Sbjct: 73 RSALEDKERDEDDEDGDGDGDGATGKKKKKKKKK 106
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine
proteinase, wild type, viral protein; 2.38A {Sindbis
virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 31.7 bits (71), Expect = 0.030
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
++KK+ K+ K KK K ++KKKK+
Sbjct: 62 NPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQP 95
Score = 31.3 bits (70), Expect = 0.040
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+KK+ K+ K KK K ++KKKK+ +
Sbjct: 71 QKKQAPKQPPKPKKPKPQEKKKKQPAK 97
Score = 30.9 bits (69), Expect = 0.046
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
R+KK+ K+ K KK K ++KKKK+
Sbjct: 70 RQKKQAPKQPPKPKKPKPQEKKKKQPA 96
Score = 30.9 bits (69), Expect = 0.046
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ K+ K KK K ++KKKK+ K K
Sbjct: 74 QAPKQPPKPKKPKPQEKKKKQPAKTK 99
Score = 30.9 bits (69), Expect = 0.056
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHL 53
K+ K KK K ++KKKK+ K K +++ + + L
Sbjct: 75 APKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRL 115
Score = 30.5 bits (68), Expect = 0.062
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
K KK K ++KKKK+ K K K++R
Sbjct: 77 KQPPKPKKPKPQEKKKKQPAKTKPGKRQR 105
Score = 30.2 bits (67), Expect = 0.086
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
++KK+ K+ K KK K ++KKK+
Sbjct: 68 PPRQKKQAPKQPPKPKKPKPQEKKKKQ 94
Score = 29.4 bits (65), Expect = 0.19
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ K KK K ++KKKK+ K K K+
Sbjct: 76 PKQPPKPKKPKPQEKKKKQPAKTKPGKR 103
Score = 29.0 bits (64), Expect = 0.23
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ L G T + + + ++KK+ K+ K KK +
Sbjct: 50 SALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPK 86
Score = 27.9 bits (61), Expect = 0.53
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCI 46
KK K ++KKKK+ K K K+++ E +
Sbjct: 80 PKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRL 115
Score = 27.9 bits (61), Expect = 0.69
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ + ++KK+ K+ K KK K ++
Sbjct: 62 NPRPRPPPRQKKQAPKQPPKPKKPKPQE 89
Score = 26.3 bits (57), Expect = 2.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKK 35
+K K ++KKKK+ K K K+++
Sbjct: 80 PKPKKPKPQEKKKKQPAKTKPGKRQR 105
Score = 25.5 bits (55), Expect = 3.7
Identities = 4/31 (12%), Positives = 14/31 (45%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
+ + + + ++KK+ K+ K + +
Sbjct: 57 ATRPQNPRPRPPPRQKKQAPKQPPKPKKPKP 87
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.043
Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 9/82 (10%)
Query: 31 KKKKKKKKRDFEQLCINYAN--------EHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS 82
K + K DF+ +N N E LQ Q + + I+ R
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 83 DNTLCLQLVEGKPNGLLCVLDD 104
L + N LL VL +
Sbjct: 232 AELRRLLKSKPYENCLL-VLLN 252
Score = 28.3 bits (62), Expect = 0.49
Identities = 15/103 (14%), Positives = 26/103 (25%), Gaps = 23/103 (22%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCI-NYANEHLQYYFNQHVFQYEQEEYNK 71
+ K + + + K D + Y H+ + H+ E E
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLKNIEHPE--- 488
Query: 72 EGIRWRHIEFSDNTLCLQLVEGK----------PNGLLCVLDD 104
R F L + +E K +L L
Sbjct: 489 -----RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 31.2 bits (71), Expect = 0.044
Identities = 6/63 (9%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKE 72
RK+ + ++ ++ + R F + + H++ +
Sbjct: 298 RKEGGAWSTPRLERPSPLSQEALRAFRGFLEEAGLTLEGPV-LDRAGHLYLLPEGLPTLL 356
Query: 73 GIR 75
G++
Sbjct: 357 GLK 359
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 31.1 bits (70), Expect = 0.051
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 1 MFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKK 36
M +N R + +R + K K+ +K
Sbjct: 1 MASNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 29.2 bits (65), Expect = 0.25
Identities = 3/26 (11%), Positives = 7/26 (26%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKK 37
+ + K K+ +K
Sbjct: 11 QNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.8 bits (64), Expect = 0.32
Identities = 3/29 (10%), Positives = 8/29 (27%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ + + K K+ +K
Sbjct: 7 YQEPQNRDISSRSNGKNPFKRSTGRKVSN 35
Score = 28.8 bits (64), Expect = 0.33
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
++R+ ++ + + + K K+ R
Sbjct: 2 ASNRRYQEPQNRDISSRSNGKNPFKRSTGR 31
Score = 28.4 bits (63), Expect = 0.42
Identities = 3/26 (11%), Positives = 8/26 (30%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ + + K K+ +K
Sbjct: 11 QNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 26.8 bits (59), Expect = 1.3
Identities = 3/28 (10%), Positives = 10/28 (35%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
++ + + + K K+ +K
Sbjct: 6 RYQEPQNRDISSRSNGKNPFKRSTGRKV 33
Score = 26.8 bits (59), Expect = 1.4
Identities = 3/29 (10%), Positives = 11/29 (37%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
R ++ + + + K K+ ++
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRK 32
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 30.5 bits (69), Expect = 0.075
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYY 56
++ KK+KK+ + KKK + + + + + A EH ++
Sbjct: 478 QEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDALEHHHHH 521
Score = 28.5 bits (64), Expect = 0.39
Identities = 10/47 (21%), Positives = 23/47 (48%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQH 60
+++ KK+KK+ + KKK + +L + L+++ + H
Sbjct: 476 IEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDALEHHHHHH 522
Score = 24.3 bits (53), Expect = 9.5
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 17 KKKKKKKKKKKKKKKKKKKKKKRD 40
K +++ KK+KK+ + KK+
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKA 495
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
i.1.1.1
Length = 140
Score = 30.0 bits (68), Expect = 0.076
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K K ++ + +K +K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 29.2 bits (66), Expect = 0.15
Identities = 3/28 (10%), Positives = 11/28 (39%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
++ K ++ + +K +K +
Sbjct: 2 AKPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.5 bits (59), Expect = 1.6
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKK 36
K ++ + +K +K K
Sbjct: 4 PIPKIGSRRNGRISSRKSASARKIPK 29
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 29.9 bits (67), Expect = 0.13
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 2 FANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
F + ++++K+ + K KKK K K K+ +
Sbjct: 342 FFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 29.8 bits (67), Expect = 0.13
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEH 52
S KK KK K+ K +K + +F+ + E
Sbjct: 30 STLAKKLDKKHWKRNPDKNCFHCEKLENNFDDIKHTTLGER 70
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 29.0 bits (64), Expect = 0.15
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
S KK KK K +KK KK+KK R
Sbjct: 7 SAPAPKKGSKKAVTKTQKKGDKKRKKSR 34
Score = 29.0 bits (64), Expect = 0.17
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDF 41
KK KK K +KK KK+KK +K +
Sbjct: 6 KSAPAPKKGSKKAVTKTQKKGDKKRKKSRKESY 38
Score = 27.8 bits (61), Expect = 0.47
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINY 48
++ KK KK K +KK KK+K+ ++ Y
Sbjct: 4 PAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKESYSIY 41
Score = 24.7 bits (53), Expect = 6.3
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ K KK KK K +KK +
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDK 28
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 29.1 bits (66), Expect = 0.18
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
+ + ++++++KK K KK +K D+E +
Sbjct: 233 EEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWELM 268
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 29.1 bits (66), Expect = 0.20
Identities = 3/32 (9%), Positives = 15/32 (46%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
+ K++ + + + + +K+ + ++ Q
Sbjct: 160 PKPKREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 24.5 bits (54), Expect = 8.9
Identities = 3/27 (11%), Positives = 14/27 (51%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKRDFEQL 44
K++ + + + + +K+ + ++L
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKEL 189
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 29.0 bits (65), Expect = 0.21
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 16 KKKKKKKKKKKKKKKKKKKKKKKRDF 41
KK +K+ + F
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVF 28
Score = 28.6 bits (64), Expect = 0.25
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKK 36
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 28.6 bits (64), Expect = 0.25
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKK 37
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 28.3 bits (63), Expect = 0.31
Identities = 3/24 (12%), Positives = 7/24 (29%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKK 35
+ KK +K+ +
Sbjct: 2 APKKTAPVQKEVISYGPPNVGANE 25
Score = 27.9 bits (62), Expect = 0.49
Identities = 3/25 (12%), Positives = 6/25 (24%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKRDFE 42
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENV 27
Score = 27.1 bits (60), Expect = 0.86
Identities = 3/30 (10%), Positives = 8/30 (26%)
Query: 19 KKKKKKKKKKKKKKKKKKKKRDFEQLCINY 48
KK +K+ + + +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVFGVCH 32
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor
60S, translation, large ribosomal subunit; 3.52A
{Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Length = 264
Score = 29.1 bits (66), Expect = 0.22
Identities = 4/31 (12%), Positives = 13/31 (41%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
++ +K + ++ + +K+K K
Sbjct: 229 WASAGQKVGLRAARRTGLVRGGQKEKMAMKA 259
Score = 26.4 bits (59), Expect = 2.0
Identities = 3/26 (11%), Positives = 11/26 (42%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKKRD 40
+K + ++ + +K+K +
Sbjct: 234 QKVGLRAARRTGLVRGGQKEKMAMKA 259
Score = 25.3 bits (56), Expect = 4.4
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKK 35
R ++ + +K+K K
Sbjct: 239 RAARRTGLVRGGQKEKMAMKAAA 261
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 29.0 bits (64), Expect = 0.25
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 2/71 (2%)
Query: 1 MFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQH 60
A G G + + + + ++ KK +R E L Y +
Sbjct: 79 EAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQRSREDLSALTRQGRYPPY--ER 136
Query: 61 VFQYEQEEYNK 71
V E
Sbjct: 137 VVLREASFKRP 147
>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human
papillomavirus type 16} SCOP: b.121.6.1
Length = 505
Score = 28.6 bits (64), Expect = 0.35
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKK 35
L+ + K+K K+KK+K
Sbjct: 472 LGLKAKPKFTLGKRKATPTTSSTSTTAKRKKRK 504
Score = 25.9 bits (57), Expect = 3.2
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKK 36
K+K K+KK+K
Sbjct: 478 PKFTLGKRKATPTTSSTSTTAKRKKRK 504
Score = 25.6 bits (56), Expect = 4.0
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ K+K K+KK+K
Sbjct: 476 AKPKFTLGKRKATPTTSSTSTTAKRKKRK 504
Score = 25.2 bits (55), Expect = 5.1
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
G K K+K K+KK++
Sbjct: 473 GLKAKPKFTLGKRKATPTTSSTSTTAKRKKRK 504
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 28.7 bits (65), Expect = 0.37
Identities = 4/35 (11%), Positives = 14/35 (40%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
RN + ++K+ + K+ + ++ +
Sbjct: 461 RNIENWVQRKRPGSPAAQASKRASEMACQQPTQPP 495
Score = 25.6 bits (57), Expect = 4.0
Identities = 4/35 (11%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 12 SRKKKKKKK---KKKKKKKKKKKKKKKKKKRDFEQ 43
S ++ + ++K+ + K+ + +Q
Sbjct: 456 SAGPQRNIENWVQRKRPGSPAAQASKRASEMACQQ 490
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 28.6 bits (64), Expect = 0.39
Identities = 7/26 (26%), Positives = 19/26 (73%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
R++ ++K ++ K K+K +K++ +K+
Sbjct: 315 RRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 27.4 bits (61), Expect = 0.84
Identities = 6/27 (22%), Positives = 20/27 (74%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+K+++ ++K ++ K K+K +K++ ++
Sbjct: 313 QKRRETEEKMRRAKLAKEKAEKERLEK 339
Score = 27.0 bits (60), Expect = 1.1
Identities = 6/27 (22%), Positives = 20/27 (74%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
++++ ++K ++ K K+K +K++ +K+
Sbjct: 314 KRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 25.9 bits (57), Expect = 3.4
Identities = 8/31 (25%), Positives = 22/31 (70%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
++ +K+++ ++K ++ K K+K +K+R +Q
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 28.3 bits (62), Expect = 0.44
Identities = 9/36 (25%), Positives = 10/36 (27%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDF 41
N KK K +K K K K F
Sbjct: 286 FNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAF 321
Score = 27.5 bits (60), Expect = 0.79
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
++ K K KK K +K K
Sbjct: 284 TKFNTKDLKTGKKNSKMTAAQKALAKV 310
Score = 27.5 bits (60), Expect = 0.95
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
K K K KK K +K K
Sbjct: 283 YTKFNTKDLKTGKKNSKMTAAQKALAK 309
Score = 27.1 bits (59), Expect = 1.1
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKK 37
D T K K KK K +K K
Sbjct: 282 DYTKFNTKDLKTGKKNSKMTAAQKALAKV 310
Score = 27.1 bits (59), Expect = 1.3
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
L + +++ K K K KK K +K
Sbjct: 270 LKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKA 306
Score = 26.3 bits (57), Expect = 1.9
Identities = 8/36 (22%), Positives = 11/36 (30%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ + K KK K +K K K K
Sbjct: 281 EDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMK 316
Score = 26.3 bits (57), Expect = 2.1
Identities = 10/45 (22%), Positives = 12/45 (26%), Gaps = 12/45 (26%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKK------------KKKKKKKKK 38
D + KK K +K K K KK K
Sbjct: 287 NTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGK 331
Score = 25.2 bits (54), Expect = 5.1
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K+ K K K KK K ++
Sbjct: 280 KEDYTKFNTKDLKTGKKNSKMTAAQKA 306
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
transferase; 2.00A {Oryza sativa japonica group}
Length = 483
Score = 28.1 bits (62), Expect = 0.52
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 21 KKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEE 68
K KK+K +K +KK E LC Y E Y+ + ++
Sbjct: 217 KAGTKKQKYEKISEKKVATSIEALCRGYPTEFASYF--HYCRSLRFDD 262
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 28.3 bits (63), Expect = 0.52
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
T K+ ++K + KK+ K + +
Sbjct: 630 TWGKQGGGTQQKAEGKKRPSTKGRGPDEV 658
Score = 27.9 bits (62), Expect = 0.63
Identities = 8/56 (14%), Positives = 21/56 (37%)
Query: 16 KKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNK 71
K+ ++K + KK+ K + D + + + Q + + E+ +
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFTR 687
Score = 27.5 bits (61), Expect = 0.92
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
K+ ++K + KK+ K + +
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRG 660
Score = 27.1 bits (60), Expect = 1.2
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
K K+ ++K + KK+ K R ++
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDE 657
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase;
protein-aminoacyladenylate complex class-II tRNA
synthetase,; HET: 5CA; 2.55A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.51.1.1
d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Length = 501
Score = 28.1 bits (63), Expect = 0.56
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
S + +K KK + +K +F +
Sbjct: 11 SSGLVPRGSHMQKPIKKDPNRYHGEKMTEFSE 42
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 27.9 bits (61), Expect = 0.63
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
T+ + K + KK KK+K +++KKK+ +
Sbjct: 817 TTARAKARAKKTKKEKGPNEEEKKKEHE 844
Score = 25.9 bits (56), Expect = 3.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
S + K + KK KK+K +++KKK+ +
Sbjct: 816 STTARAKARAKKTKKEKGPNEEEKKKEHE 844
Score = 25.5 bits (55), Expect = 4.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ K + KK KK+K +++KKK+ +
Sbjct: 819 ARAKARAKKTKKEKGPNEEEKKKEHEE 845
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 27.6 bits (62), Expect = 0.72
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
R +K + K+K KKK+K K+ ++R
Sbjct: 176 RARKMEDSKEKNGKKKRKSLAKRIRER 202
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 27.5 bits (62), Expect = 0.72
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
S K+KK +K+ K+ +KK+K K +
Sbjct: 152 SILKRKKFEKELKELQKKQKHKLEHHHHH 180
Score = 26.3 bits (59), Expect = 2.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 17 KKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
K+KK +K+ K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 25.2 bits (56), Expect = 4.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
RKK +K+ K+ +KK+K K +
Sbjct: 156 RKKFEKELKELQKKQKHKLEHHHHHH 181
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L
3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Length = 142
Score = 27.3 bits (60), Expect = 0.78
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 1 MFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
M G RK + +K ++ K+ + R+
Sbjct: 1 MGVGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWRN 40
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 27.6 bits (62), Expect = 0.79
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K KK K K K KK K ++
Sbjct: 450 KNTTSVKKAKGKNPKNTTSVKKAKGKN 476
Score = 27.2 bits (61), Expect = 1.2
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEH 52
++ K KK K K K KK + ++ + H
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGKNGSRHHHHHH 485
Score = 25.7 bits (57), Expect = 4.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKK 33
+ TS KK K K K KK K K
Sbjct: 451 NTTSVKKAKGKNPKNTTSVKKAKGK 475
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 27.7 bits (61), Expect = 0.79
Identities = 8/66 (12%), Positives = 16/66 (24%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKE 72
++ + K + K K N+ + Q K+
Sbjct: 126 DTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHGGCGAAQPTIRKD 185
Query: 73 GIRWRH 78
G+R
Sbjct: 186 GLRLWG 191
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell
WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus
aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Length = 263
Score = 27.3 bits (61), Expect = 0.80
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ + K KKKK KR
Sbjct: 7 HHHHSSGLVPRGSHMQPVGKPPKKKKSKR 35
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A
{Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A*
2csn_A*
Length = 298
Score = 27.3 bits (61), Expect = 0.91
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 21 KKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQHVFQYEQE 67
K K+K ++ +KK+ +LC + E +Y ++
Sbjct: 222 KAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDAT 268
>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase,
peptidoglycan deacetylase, metalloenzyme, D275N mutant,
hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae}
SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A
Length = 431
Score = 27.3 bits (60), Expect = 0.98
Identities = 9/79 (11%), Positives = 23/79 (29%)
Query: 17 KKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRW 76
+ +K ++ + K K + L Y + ++ Y+ +
Sbjct: 51 LQGEKVISSVRELINQDVKDKLESKDNLVFYYTEQEESGLKGVVNRNVTKQIYDLVAFKI 110
Query: 77 RHIEFSDNTLCLQLVEGKP 95
E + +G+P
Sbjct: 111 EETEKTSLGKVHLTEDGQP 129
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 1.0
Identities = 8/43 (18%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 13 RKKKKKK-KKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQ 54
R++++K+ ++ K +++ ++K K+D E+ +E ++
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ-SEQVE 132
Score = 25.5 bits (55), Expect = 3.7
Identities = 9/46 (19%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 5 LRNGDGTSRKKKKKKKKKKKK-------KKKKKKKKKKKKKRDFEQ 43
L+ D S+ +++ ++K KK ++ ++ +K K R ++
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 26.5 bits (59), Expect = 1.1
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ K+ +K++ KK K +
Sbjct: 85 EGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 25.8 bits (57), Expect = 1.8
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ K+ +K++ KK K +
Sbjct: 85 EGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 25.8 bits (57), Expect = 2.4
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ + K+ +K++ KK K
Sbjct: 84 PEGYEMKRVGDYYVFEKRESKKSKGG 109
Score = 25.0 bits (55), Expect = 4.0
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
G ++ + + K+ +K++ KK
Sbjct: 77 GILKEVVPEGYEMKRVGDYYVFEKRESKK 105
Score = 25.0 bits (55), Expect = 4.1
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+G + + K+ +K++ KK K
Sbjct: 75 NHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGG 109
Score = 25.0 bits (55), Expect = 4.2
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ + K+ +K++ KK K +
Sbjct: 84 PEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 24.6 bits (54), Expect = 5.1
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
+ + K+ +K++ KK + E
Sbjct: 81 EVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 26.7 bits (59), Expect = 1.2
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 50 NEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 83
E + + Y K G++ HI D
Sbjct: 36 PEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPD 69
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor,
PF670462, transferase-transferase I complex; HET: 0CK;
1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Length = 296
Score = 26.9 bits (60), Expect = 1.2
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 21 KKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEE 68
K K++K ++ +KK E LC Y +E Y ++
Sbjct: 219 KAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYL--NFCRSLRFDD 264
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 26.8 bits (58), Expect = 1.4
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
RK+K ++ K+ ++++ + + + K+D
Sbjct: 140 RKRKTREAAKRNRRRRPQARFTPQNKQD 167
Score = 26.4 bits (57), Expect = 1.8
Identities = 3/29 (10%), Positives = 15/29 (51%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+K+K ++ K+ ++++ + + +
Sbjct: 137 QDVRKRKTREAAKRNRRRRPQARFTPQNK 165
Score = 26.4 bits (57), Expect = 2.0
Identities = 3/29 (10%), Positives = 16/29 (55%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+K+K ++ K+ ++++ + + + +
Sbjct: 137 QDVRKRKTREAAKRNRRRRPQARFTPQNK 165
Score = 25.6 bits (55), Expect = 3.8
Identities = 5/29 (17%), Positives = 16/29 (55%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
+ +K+K ++ K+ ++++ + R Q
Sbjct: 135 NTQDVRKRKTREAAKRNRRRRPQARFTPQ 163
Score = 25.2 bits (54), Expect = 4.9
Identities = 3/30 (10%), Positives = 16/30 (53%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
+ +K+K ++ K+ ++++ + + +
Sbjct: 135 NTQDVRKRKTREAAKRNRRRRPQARFTPQN 164
Score = 24.8 bits (53), Expect = 5.5
Identities = 3/29 (10%), Positives = 17/29 (58%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
+K+K ++ K+ ++++ + + ++ +
Sbjct: 139 VRKRKTREAAKRNRRRRPQARFTPQNKQD 167
Score = 24.8 bits (53), Expect = 6.5
Identities = 4/27 (14%), Positives = 15/27 (55%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
RK ++ K+ ++++ + + + K+
Sbjct: 142 RKTREAAKRNRRRRPQARFTPQNKQDV 168
Score = 24.8 bits (53), Expect = 7.2
Identities = 4/31 (12%), Positives = 18/31 (58%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
++++ + + +K+K ++ K+ ++R +
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRRRPQA 158
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 26.9 bits (59), Expect = 1.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+KK KK+ KKK+ + K +KK R
Sbjct: 252 VYEKKPKKEVKKKRWNRPKMSLAQKKDR 279
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 26.7 bits (58), Expect = 1.8
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
+ + K K++ K +K K KK + +
Sbjct: 347 AAEASKAKRQATLKANRKAAKTHKKGSQAWIAA 379
Score = 26.3 bits (57), Expect = 2.0
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ K K++ K +K K KK +
Sbjct: 349 EASKAKRQATLKANRKAAKTHKKGSQAW 376
Score = 25.6 bits (55), Expect = 3.5
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ K K++ K +K K KK +
Sbjct: 342 EQAKKAAEASKAKRQATLKANRKAAKTHKKGSQA 375
Score = 25.6 bits (55), Expect = 4.8
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ + + K++ K +K K KK +
Sbjct: 343 QAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIA 378
Score = 24.8 bits (53), Expect = 7.2
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
++K + K K++ K +K K K+ +
Sbjct: 344 AKKAAEASKAKRQATLKANRKAAKTHKKGSQA 375
Score = 24.8 bits (53), Expect = 8.1
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ KK + K K++ K +K K
Sbjct: 340 VKEQAKKAAEASKAKRQATLKANRKAAKTH 369
Score = 24.4 bits (52), Expect = 9.2
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K +K K KK + K +
Sbjct: 358 TLKANRKAAKTHKKGSQAWIAAFNKANE 385
>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel, hydrolase,
metal-binding; 1.69A {Escherichia coli} PDB: 2w3u_A
Length = 188
Score = 26.3 bits (59), Expect = 1.8
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEH 52
S K+++ ++K +K + K + D + + + H
Sbjct: 147 SPLKQQRIRQKVEKLDRLKARAPNSSSVDKLAAALEHHHHH 187
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 26.2 bits (58), Expect = 1.9
Identities = 2/22 (9%), Positives = 11/22 (50%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKK 32
+ ++K+ +++K ++
Sbjct: 177 VVLQPPRRKEVPRRRKNHRRSG 198
Score = 25.4 bits (56), Expect = 4.4
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 15 KKKKKKKKKKKKKKKKKKK 33
+ ++K+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
Score = 25.4 bits (56), Expect = 4.4
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 16 KKKKKKKKKKKKKKKKKKK 34
+ ++K+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
Score = 25.4 bits (56), Expect = 4.4
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 17 KKKKKKKKKKKKKKKKKKK 35
+ ++K+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
Score = 25.4 bits (56), Expect = 4.4
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 18 KKKKKKKKKKKKKKKKKKK 36
+ ++K+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
Score = 25.4 bits (56), Expect = 4.4
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 19 KKKKKKKKKKKKKKKKKKK 37
+ ++K+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
Score = 25.4 bits (56), Expect = 4.4
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 20 KKKKKKKKKKKKKKKKKKK 38
+ ++K+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
Score = 24.6 bits (54), Expect = 8.4
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 21 KKKKKKKKKKKKKKKKKKR 39
+ ++K+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 25.7 bits (56), Expect = 2.3
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K K K+KKKK K K+++
Sbjct: 7 KAPPPSSKPAKSGGGKQKKKKWSKGKQKE 35
Score = 24.6 bits (53), Expect = 6.3
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKK 37
KK K K K K+KKKK
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKK 27
Score = 24.6 bits (53), Expect = 6.3
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKK 38
KK K K K K+KKKK
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKK 27
Score = 24.2 bits (52), Expect = 8.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K K K+KKKK K K+K+K +
Sbjct: 9 PPPSSKPAKSGGGKQKKKKWSKGKQKEKVN 38
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 26.4 bits (59), Expect = 2.3
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 28 KKKKKKKKKKKRDFEQLCINYANE 51
KK +KK +F + C +A E
Sbjct: 107 KKGVDRKKMSTAEFREKCKEFALE 130
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 26.2 bits (57), Expect = 2.3
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 1 MFANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
++ + K +KK K++ + KK ++ K E+
Sbjct: 239 IYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEE 281
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_X 2go5_4 2j37_4
Length = 152
Score = 26.0 bits (57), Expect = 2.3
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKK 36
K KK K ++ K K K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKS 26
Score = 26.0 bits (57), Expect = 2.3
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKK 37
K KK K ++ K K K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKS 26
Score = 26.0 bits (57), Expect = 2.3
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 16 KKKKKKKKKKKKKKKKKKKKKKK 38
K KK K ++ K K K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKS 26
Score = 24.8 bits (54), Expect = 5.4
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
K ++ K K K K+K KK
Sbjct: 9 KADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 24.1 bits (52), Expect = 9.0
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 17 KKKKKKKKKKKKKKKKKKKKKKR 39
K KK K ++ K K K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKS 26
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 26.2 bits (57), Expect = 2.4
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 64 YEQEEYNKEGIRWRHIEFSDNT 85
+ Y + GI H +D
Sbjct: 91 NLLDLYQQCGIITHHHPIADGG 112
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 26.0 bits (58), Expect = 2.4
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
++ K+ K+K+ + K K
Sbjct: 170 TRRNMSLNIDGKRSGKQKRTDRVKGK 195
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 26.0 bits (57), Expect = 2.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K +++ +KKK +KK KK+K R+
Sbjct: 158 PKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 24.5 bits (53), Expect = 8.8
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
T +++ K +++ +KKK +KK KK++
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQK 179
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 25.7 bits (57), Expect = 2.5
Identities = 5/21 (23%), Positives = 14/21 (66%)
Query: 13 RKKKKKKKKKKKKKKKKKKKK 33
R ++ K+K +++ +K+K+
Sbjct: 171 RLRRDSKEKNERRLAYQKRKE 191
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3; catalytic domain, oligosaccharyl
transferase; NMR {Saccharomyces cerevisiae}
Length = 273
Score = 26.0 bits (56), Expect = 2.5
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 5 LRNGDGTSRKKKKKKKKKKKKKKKKKKKKK 34
L+ D R + + + K ++ K+
Sbjct: 237 LKKDDAQGRTLRDVGELTRSSTKTRRSIKR 266
Score = 26.0 bits (56), Expect = 3.1
Identities = 2/28 (7%), Positives = 11/28 (39%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ + + + + K ++ K+ +
Sbjct: 243 QGRTLRDVGELTRSSTKTRRSIKRPELG 270
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 26.1 bits (58), Expect = 2.7
Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 7 NGDG----TSRKK---KKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQ 59
G+G + K+KK +KK K + K+++K +Y FN
Sbjct: 291 QGEGHFVAKLTFHGQNQMHKEKKTRKKSKVQMTKEQEKLWTEFSNDFHYEATGRLLVFND 350
Query: 60 HVFQYEQEEYNKEGIR 75
H+++ + + +G++
Sbjct: 351 HLWEVPELAPSLDGLK 366
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 25.9 bits (57), Expect = 2.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
+S +K +KKKKKK K + + + E
Sbjct: 367 SSASRKTQKKKKKKASKTAENATSGETLEENE 398
Score = 25.9 bits (57), Expect = 3.4
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
+K +KKKKKK K + E+
Sbjct: 367 SSASRKTQKKKKKKASKTAENATSGETLEE 396
Score = 25.5 bits (56), Expect = 3.7
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+ +K +KKKKKK K + +
Sbjct: 366 QSSASRKTQKKKKKKASKTAENATSGE 392
Score = 25.5 bits (56), Expect = 4.1
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 16 KKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
+ +K +KKKKKK K + E L
Sbjct: 366 QSSASRKTQKKKKKKASKTAENATSGETL 394
Score = 25.1 bits (55), Expect = 5.8
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKK 34
+K +KKKKKK K +
Sbjct: 366 QSSASRKTQKKKKKKASKTAENA 388
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 25.7 bits (56), Expect = 3.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 19 KKKKKKKKKKKKKKKKKKKKRDFEQ 43
KK+ KK K KK K + +++ +
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISE 138
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design,
malaria, PDF, peptide DEFO plasmodium, hydrolase; HET:
BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1
PDB: 1rqc_A 1jym_A
Length = 188
Score = 25.6 bits (57), Expect = 3.0
Identities = 4/30 (13%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 12 SRKKKK--KKKKKKKKKKKKKKKKKKKKKR 39
++ KK + K + + K +
Sbjct: 157 TQVDKKKVRPKLNELIRDYKATHSLEHHHH 186
>3owq_A LIN1025 protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG, unknown FUN; 2.61A {Listeria innocua}
PDB: 3nro_A
Length = 321
Score = 25.8 bits (57), Expect = 3.0
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 12 SRKKKKKKKKKKKKKKKKK 30
+R + K+KK K K
Sbjct: 4 TRTETKQKKPSTFTKVMKI 22
Score = 24.3 bits (53), Expect = 9.0
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 13 RKKKKKKKKKKKKKKKKKKKK 33
+ + + K+KK K K
Sbjct: 2 TETRTETKQKKPSTFTKVMKI 22
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 25.6 bits (55), Expect = 3.6
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
G + KK KK KK KK +K+
Sbjct: 382 GVKKPKKPVVGKKAAATKKPAADKKPAEKK 411
Score = 25.6 bits (55), Expect = 3.6
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 2 FANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
G KK ++KK KK KK KK KK
Sbjct: 358 LEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKK 394
Score = 25.6 bits (55), Expect = 3.6
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
R + KK KK KK KK KK
Sbjct: 374 RKKGKKTVGVKKPKKPVVGKKAAATKKPAADKK 406
Score = 25.6 bits (55), Expect = 3.7
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
KK KK KK KK KK +
Sbjct: 383 VKKPKKPVVGKKAAATKKPAADKKPAE 409
Score = 25.6 bits (55), Expect = 3.9
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
RKK KK KK KK KK K+
Sbjct: 374 RKKGKKTVGVKKPKKPVVGKKAAATKKPAA 403
Score = 25.6 bits (55), Expect = 4.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
++ + KK ++KK KK KK KK K+
Sbjct: 361 KSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKK 394
Score = 25.2 bits (54), Expect = 5.3
Identities = 11/36 (30%), Positives = 12/36 (33%)
Query: 4 NLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
R G KK KK KK KK K+
Sbjct: 371 KPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKK 406
Score = 25.2 bits (54), Expect = 6.0
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKKKKKKK 37
G +K KK KK KK +KK
Sbjct: 382 GVKKPKKPVVGKKAAATKKPAADKKPAEKK 411
Score = 24.8 bits (53), Expect = 7.8
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ ++KK KK KK KK KK
Sbjct: 369 GKKPRRKKGKKTVGVKKPKKPVVGKKAA 396
Score = 24.8 bits (53), Expect = 8.0
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 3 ANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+ +K KK KK KK KK
Sbjct: 368 PGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAA 403
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q
3u5g_Z
Length = 108
Score = 25.0 bits (54), Expect = 3.7
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K K KK KKK KK +D
Sbjct: 8 SKAAKAAAALAGGKKSKKKWSKKSMKD 34
Score = 24.2 bits (52), Expect = 8.9
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKK 37
K++ K K KK KKK
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKK 26
Score = 24.2 bits (52), Expect = 8.9
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKK 38
K++ K K KK KKK
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKK 26
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 25.0 bits (54), Expect = 3.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 15 KKKKKKKKKKKKKKKKKKKKKKKKR 39
++K+K+ KK K+K+ KKKK+ R
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 24.2 bits (52), Expect = 8.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKK 38
++K+K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 25.6 bits (56), Expect = 3.8
Identities = 4/31 (12%), Positives = 14/31 (45%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
K++ + ++++K + + K+ R
Sbjct: 993 PSIWDLKQELEDAEEERKLMMAEARAKRTHR 1023
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 25.1 bits (54), Expect = 3.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
+K K+ K + KK KKK K K +D
Sbjct: 7 AGQKKTKEAIAKAAQAKKGGKKKWTKGKAKD 37
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding,
membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Length = 345
Score = 25.5 bits (56), Expect = 3.8
Identities = 4/41 (9%), Positives = 10/41 (24%)
Query: 16 KKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYY 56
+ K + K + + + E Q+
Sbjct: 262 QNLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFL 302
>2hra_A Glutamyl-tRNA synthetase, cytoplasmic; GST-fold, ligase; 1.90A
{Saccharomyces cerevisiae} PDB: 2hrk_A 2hsm_A
Length = 209
Score = 25.6 bits (55), Expect = 4.1
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 19 KKKKKKKKKKKKKKKKKKKKRDFE 42
K + KK KKK+ K +FE
Sbjct: 186 KSLLELKKSANVGKKKETHKANFE 209
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 25.6 bits (55), Expect = 4.1
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
K K KK KK+ +K
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRKE 30
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 25.0 bits (55), Expect = 4.4
Identities = 2/22 (9%), Positives = 5/22 (22%)
Query: 64 YEQEEYNKEGIRWRHIEFSDNT 85
+ G+ + D
Sbjct: 47 GPPHSDSCPGLTLHRLRIPDFC 68
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 24.9 bits (54), Expect = 5.3
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKR 39
K++ K +KK + +++ +
Sbjct: 153 KEEAVAKAAEKKVVRLTSRQRGRIAA 178
Score = 24.1 bits (52), Expect = 9.1
Identities = 4/29 (13%), Positives = 14/29 (48%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
T +++ K +KK + +++ + +
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQ 179
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB:
3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 25.2 bits (54), Expect = 5.5
Identities = 7/44 (15%), Positives = 18/44 (40%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYY 56
K ++K ++ ++ +K K+K+ + Y E+
Sbjct: 16 SKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAE 59
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 25.0 bits (54), Expect = 5.5
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
D T K KK+ K+ KK +++K
Sbjct: 250 DPTMAKSTKKEPATHKRYNLKKLTYEQRKAS 280
Score = 24.6 bits (53), Expect = 8.5
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 20 KKKKKKKKKKKKKKKKKKKRDFEQ 43
K KK+ K+ KK +EQ
Sbjct: 253 MAKSTKKEPATHKRYNLKKLTYEQ 276
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 25.1 bits (56), Expect = 5.6
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKK 29
GD SRKKK +K+K+ KK+ K
Sbjct: 556 GD-ISRKKKLLQKQKEGKKRMK 576
>1dvo_A FINO, fertility inhibition protein O; repressor, bacterial
conjugation, X-RAY crystallography, transcription;
2.00A {Escherichia coli} SCOP: a.136.1.1
Length = 152
Score = 25.1 bits (54), Expect = 5.6
Identities = 5/53 (9%), Positives = 15/53 (28%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQHVFQ 63
+K ++ + KK + ++ +N F+ +
Sbjct: 10 KLAEKAAREAELTAKKAQARQALSIYLNLPTLDEAVNTLKPWWPGLFDGDTPR 62
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 25.1 bits (56), Expect = 5.7
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKK 29
GD +RKKK + +K+ KK+ K
Sbjct: 561 GD-VTRKKKLLENQKEGKKRMK 581
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 25.2 bits (55), Expect = 5.8
Identities = 6/26 (23%), Positives = 22/26 (84%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
RKKK++++++ + + + K+++++++K
Sbjct: 399 RKKKEEEERRARMEAQLKEQRERERK 424
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 25.2 bits (55), Expect = 5.9
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEH 52
K++ ++ ++ K + K K K L N +E
Sbjct: 2048 KEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSER 2086
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P
3u5g_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 24.7 bits (53), Expect = 5.9
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFE 42
+ ++ + + KK+ K F
Sbjct: 16 RVHRRNNRWAENNYKKRLLGTAFKSSPFG 44
Score = 24.3 bits (52), Expect = 9.9
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKK 37
R ++ + + KK+ K
Sbjct: 16 RVHRRNNRWAENNYKKRLLGTAFKS 40
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 25.2 bits (54), Expect = 6.0
Identities = 11/77 (14%), Positives = 25/77 (32%)
Query: 2 FANLRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQHV 61
F G + + + +K +K K+ K+ + K+ + + + +
Sbjct: 118 FHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKAD 177
Query: 62 FQYEQEEYNKEGIRWRH 78
QE+ K R
Sbjct: 178 SSMSQEQLRKLQERVGR 194
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_B 2zkr_a
Length = 261
Score = 24.9 bits (55), Expect = 6.1
Identities = 3/19 (15%), Positives = 7/19 (36%)
Query: 13 RKKKKKKKKKKKKKKKKKK 31
R+ + + + K K
Sbjct: 241 RRTGRLRGQAAATAAKADK 259
Score = 24.5 bits (54), Expect = 7.7
Identities = 3/28 (10%), Positives = 8/28 (28%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKK 37
G ++ + + + K K
Sbjct: 232 GQKVGLIAARRTGRLRGQAAATAAKADK 259
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics,
medical structural genomics of pathogen protozoa,
MSGPP, unknown function; HET: MSE EPE; 2.30A
{Leishmania major}
Length = 167
Score = 24.6 bits (53), Expect = 6.4
Identities = 5/20 (25%), Positives = 6/20 (30%)
Query: 64 YEQEEYNKEGIRWRHIEFSD 83
Y+ GI F D
Sbjct: 59 YDATLVKSRGIDVHSWPFDD 78
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 24.8 bits (53), Expect = 7.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+R K +K+K K+ K ++ K K
Sbjct: 350 ARIKARKEKLDSKRTKLSPEEAAKVKA 376
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 24.7 bits (53), Expect = 8.0
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 17 KKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
+ K KK K K+ KK K Q
Sbjct: 260 RVKSTKKNDKPKRDHKKFYPTKLTAAQ 286
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 24.4 bits (52), Expect = 8.4
Identities = 5/27 (18%), Positives = 15/27 (55%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ +K K +++K + K++K + +
Sbjct: 18 KLRKAKAEQRKASSAQMKQRKAEWISK 44
Score = 24.4 bits (52), Expect = 8.4
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYY 56
+ +K +K K +++K + K++K ++ YA E+
Sbjct: 13 LARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAE 56
Score = 24.4 bits (52), Expect = 9.7
Identities = 9/49 (18%), Positives = 23/49 (46%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQH 60
+ +KK + +K +K K +++K + + + I+ A ++ Y
Sbjct: 8 NVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAE 56
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 24.5 bits (53), Expect = 8.5
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
++ K+K + K++K+++K +K K+
Sbjct: 144 KEIKEKYPRPPKRRKEERKGRKPWKE 169
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision
pathway, N induced-FIT, hydrolase-hydrolase inhibitor
complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB:
3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A
3pn6_A 3m6r_A 3cpm_A
Length = 193
Score = 24.4 bits (54), Expect = 9.1
Identities = 4/28 (14%), Positives = 15/28 (53%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
R++ + +KK ++K ++ + ++
Sbjct: 156 REELEALEKKYEEKTGLPSPERVEARQK 183
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 24.4 bits (52), Expect = 9.2
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQ 43
K K + KKK + ++ + + E
Sbjct: 531 SKIKTLFPLIEAKKKDQVTAQEIFQDNHED 560
Score = 24.4 bits (52), Expect = 9.3
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
++ S+ K + KKK + ++ + +
Sbjct: 525 KSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNHE 559
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea}
Length = 161
Score = 24.3 bits (53), Expect = 9.4
Identities = 3/29 (10%), Positives = 11/29 (37%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
++ + K K +++ + + R
Sbjct: 26 AAKPLLPSFPIIEAKAKTRREDRTARHVR 54
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_G
Length = 113
Score = 23.8 bits (51), Expect = 9.8
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
R K+ + K K+ K K
Sbjct: 2 RLTKEAAAVAEGKSKQDASPKPYAVKYG 29
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 24.1 bits (53), Expect = 9.8
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 13 RKKKKKKKKKKKKKKKKKKKK 33
RK K+K K KKKKKK K K
Sbjct: 165 RKHKEKMSKDGKKKKKKSKTK 185
>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase,
lipoprotein, membrane, palmitate, rotamase; NMR
{Staphylococcus aureus}
Length = 111
Score = 23.8 bits (52), Expect = 9.9
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
K+ K+ K+K ++ +K+ K F ++
Sbjct: 18 KSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEI 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.387
Gapped
Lambda K H
0.267 0.0482 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,621,980
Number of extensions: 91660
Number of successful extensions: 4781
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2861
Number of HSP's successfully gapped: 1108
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.0 bits)