RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16447
(107 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 70.1 bits (171), Expect = 4e-16
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 37 KKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 96
+ FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP
Sbjct: 386 QNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPI 445
Query: 97 GLLCVLDDQ 105
GL+ +LD+
Sbjct: 446 GLISLLDEA 454
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 64.7 bits (157), Expect = 3e-14
Identities = 31/70 (44%), Positives = 42/70 (60%)
Query: 36 KKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 95
FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F + + KP
Sbjct: 421 FDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKP 480
Query: 96 NGLLCVLDDQ 105
G+ +L+++
Sbjct: 481 MGIFSILEEE 490
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 63.6 bits (154), Expect = 8e-14
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 37 KKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG-- 93
+ FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E
Sbjct: 394 EINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPT 453
Query: 94 KPNGLLCVLDDQ 105
P G+L +LD++
Sbjct: 454 NPPGVLALLDEE 465
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 62.4 bits (151), Expect = 2e-13
Identities = 33/70 (47%), Positives = 43/70 (61%)
Query: 36 KKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 95
FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F + + KP
Sbjct: 419 FDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKP 478
Query: 96 NGLLCVLDDQ 105
G+L +L+++
Sbjct: 479 MGILSILEEE 488
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 62.5 bits (151), Expect = 2e-13
Identities = 38/65 (58%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 41 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 100
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E K G+L
Sbjct: 387 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLD 445
Query: 101 VLDDQ 105
+LD++
Sbjct: 446 LLDEE 450
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 59.7 bits (144), Expect = 2e-12
Identities = 37/71 (52%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Query: 37 KKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-K 94
K FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G +
Sbjct: 415 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 474
Query: 95 PNGLLCVLDDQ 105
P G+L +LD+Q
Sbjct: 475 PPGILALLDEQ 485
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 26.2 bits (57), Expect = 0.74
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 21 KKKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNK 71
K KK K + K +R F ++ + ++++E
Sbjct: 251 KTKKWTNKDTDAEGKPLERAFNMFILDPIFRLF-----TAIMNFKKDEIPV 296
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 26.2 bits (58), Expect = 0.76
Identities = 7/33 (21%), Positives = 21/33 (63%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCI 46
+ +K++KK+ ++KK+ + +++K + + C
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCE 134
Score = 23.5 bits (51), Expect = 6.0
Identities = 6/26 (23%), Positives = 19/26 (73%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKK 38
+K++KK+ ++KK+ + +++K ++
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREKFEE 128
Score = 23.5 bits (51), Expect = 6.9
Identities = 5/25 (20%), Positives = 18/25 (72%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKK 37
+++KK+ ++KK+ + +++K ++
Sbjct: 105 KEQKKQLTSQEKKQIRLEREKFEED 129
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 25.2 bits (55), Expect = 1.6
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 46 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 84
I Y + Q F+ W H E D
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 24.7 bits (53), Expect = 2.2
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 11 TSRKKKKKKKKKKKKKKKKKKKKKKK 36
R K K++ + + + + +K+
Sbjct: 156 FERLPKPKREAFLEANRAELVRFQKE 181
Score = 24.3 bits (52), Expect = 3.5
Identities = 2/25 (8%), Positives = 12/25 (48%)
Query: 9 DGTSRKKKKKKKKKKKKKKKKKKKK 33
+ + K++ + + + + +K+
Sbjct: 157 ERLPKPKREAFLEANRAELVRFQKE 181
Score = 23.9 bits (51), Expect = 5.1
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 16 KKKKKKKKKKKKKKKKKKKKKK 37
K K++ + + + + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
Score = 23.9 bits (51), Expect = 5.1
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 17 KKKKKKKKKKKKKKKKKKKKKK 38
K K++ + + + + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
Score = 23.6 bits (50), Expect = 7.0
Identities = 3/22 (13%), Positives = 10/22 (45%)
Query: 18 KKKKKKKKKKKKKKKKKKKKKR 39
K K++ + + + + +K
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 24.7 bits (52), Expect = 2.4
Identities = 7/70 (10%), Positives = 21/70 (30%)
Query: 22 KKKKKKKKKKKKKKKKKRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 81
K + K+R F + + + +L +Y ++ + + + +
Sbjct: 26 KGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNN 85
Query: 82 SDNTLCLQLV 91
+L
Sbjct: 86 KVRRFAFELK 95
>d1pzxa_ c.119.1.1 (A:) Hypothetical protein apc36103 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 287
Score = 24.9 bits (54), Expect = 2.4
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 5 LRNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCINYAN 50
L DG +K + +KK K+ + ++ + + I++A+
Sbjct: 192 LHVEDGALIPLEKWRGRKKVLKRMVELMGERGDDLQKQTIGISHAD 237
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 24.7 bits (54), Expect = 2.5
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCI 46
K + + +K+ K++K K K++ +K CI
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKEYGFCI 142
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 24.9 bits (54), Expect = 2.5
Identities = 7/27 (25%), Positives = 20/27 (74%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKR 39
++ +K+++ ++K ++ K K+K +K+R
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 24.5 bits (53), Expect = 3.1
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKR 39
+ K+ +K+++ ++K ++ K K+K +K
Sbjct: 303 AVKENQKRRETEEKMRRAKLAKEKAEKE 330
Score = 23.8 bits (51), Expect = 5.7
Identities = 6/27 (22%), Positives = 19/27 (70%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K+ +K+++ ++K ++ K K+K +++
Sbjct: 304 VKENQKRRETEEKMRRAKLAKEKAEKE 330
Score = 23.8 bits (51), Expect = 6.0
Identities = 8/32 (25%), Positives = 21/32 (65%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKKKRDFEQL 44
+ K+ +K+++ ++K ++ K K+K + E+L
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKERL 332
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 24.4 bits (53), Expect = 2.7
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKKKKKRDFEQLCI 46
K K K +++ K + + +K++ K D ++
Sbjct: 4 KGKGGKNRRRGKNENESEKRELVFKEDGQEYAQ 36
>d1q2ha_ a.34.4.1 (A:) Adapter protein APS, dimerisation domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 23.6 bits (51), Expect = 3.0
Identities = 3/17 (17%), Positives = 6/17 (35%)
Query: 39 RDFEQLCINYANEHLQY 55
DF + ++ Y
Sbjct: 16 VDFAHKFCRFLRDNPAY 32
>d1tzpa_ d.65.1.3 (A:) D-alanyl-D-alanine-endopeptidase MepA
{Escherichia coli [TaxId: 562]}
Length = 255
Score = 24.1 bits (52), Expect = 4.1
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 24 KKKKKKKKKKKKKKKRDFEQLCINYANEH 52
+ K K +KK C +EH
Sbjct: 225 EPPKPGTTKPEKKTPPPLPPSCQALLDEH 253
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 164
Score = 23.9 bits (52), Expect = 4.2
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 12 SRKKKKKKKKKKKKKKKKKK 31
+RK K+ +K+K+++ KKK
Sbjct: 142 ARKLKQYLSEKRKEQEAKKK 161
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 23.5 bits (51), Expect = 4.6
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 8 GDGTSRKKKKKKKKKKKKKKKKKKK 32
D +KK ++ + K+K K +
Sbjct: 68 SDEEVKKKLEESNLTEYMKEKIKIR 92
Score = 23.1 bits (50), Expect = 6.5
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 13 RKKKKKKKKKKKKKKKKKKKKKKKK 37
++ KKK ++ + K+K K +
Sbjct: 68 SDEEVKKKLEESNLTEYMKEKIKIR 92
Score = 22.7 bits (49), Expect = 8.6
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKK 36
G S ++ KKK ++ + K+K K +
Sbjct: 66 GASDEEVKKKLEESNLTEYMKEKIKIR 92
>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 143
Score = 23.5 bits (51), Expect = 5.9
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 10 GTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
G SR + ++++KK+ +K +K K
Sbjct: 56 GNSRGRARERQKKRAYGHQKGAGSRKGKA 84
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 23.2 bits (50), Expect = 6.5
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 12 SRKKKKKKKKKKKKKKKKKKKKKKKKKRD 40
K+ + + K+ +KR+
Sbjct: 73 WNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
>d2j01d1 b.34.5.3 (D:127-273) C-terminal domain of ribosomal protein
L2 {Thermus thermophilus [TaxId: 274]}
Length = 147
Score = 23.3 bits (50), Expect = 7.1
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 6 RNGDGTSRKKKKKKKKKKKKKKKKKKKKKKKKK 38
+G G R + + + K K +K++K
Sbjct: 106 PHGGGEGRAPRGRPPASPWGWQTKGLKTRKRRK 138
>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 176
Score = 23.5 bits (50), Expect = 7.3
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 62 FQYEQEEYNKEGIRWRHIEFSDNTLC 87
+ Y + GI H +D
Sbjct: 65 VPNLLDLYQQCGIITHHHPIADGGTP 90
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 22.4 bits (48), Expect = 8.7
Identities = 5/18 (27%), Positives = 6/18 (33%)
Query: 12 SRKKKKKKKKKKKKKKKK 29
S +K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.387
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 420,153
Number of extensions: 21264
Number of successful extensions: 1051
Number of sequences better than 10.0: 1
Number of HSP's gapped: 570
Number of HSP's successfully gapped: 318
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.1 bits)