BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1645
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29742|CLH_DROME Clathrin heavy chain OS=Drosophila melanogaster GN=Chc PE=2 SV=1
Length = 1678
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/110 (74%), Positives = 94/110 (85%)
Query: 33 VDHLSKTPFYVLRCNEPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATE 92
V++L + + RCNEP VWSQLAKAQLQ+GLVKE+IDS+IKADDPSAY+DVV+ + E
Sbjct: 1090 VNNLERANEFAERCNEPAVWSQLAKAQLQQGLVKEAIDSYIKADDPSAYVDVVDVASKVE 1149
Query: 93 SWEDLVRYLQMARKKARESYIESELIYAYARTNRLADLEEFISGEGFFEI 142
SW+DLVRYLQMARKKARESYIESELIYAYART RLADLEEFISG +I
Sbjct: 1150 SWDDLVRYLQMARKKARESYIESELIYAYARTGRLADLEEFISGPNHADI 1199
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/27 (88%), Positives = 25/27 (92%)
Query: 3 ACTEPATHNALAKIYIDSNNNPERFLK 29
C EPATHNALAKIYIDSNNNPER+LK
Sbjct: 870 GCVEPATHNALAKIYIDSNNNPERYLK 896
>sp|Q68FD5|CLH1_MOUSE Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=1 SV=3
Length = 1675
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 71/104 (68%), Positives = 93/104 (89%)
Query: 33 VDHLSKTPFYVLRCNEPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATE 92
+ +L + + RCNEP VWSQLAKAQLQKG+VKE+IDS+IKADDPS+YM+VV+ ++A+
Sbjct: 1089 IGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANASG 1148
Query: 93 SWEDLVRYLQMARKKARESYIESELIYAYARTNRLADLEEFISG 136
+WE+LV+YLQMARKKARESY+E+ELI+A A+TNRLA+LEEFI+G
Sbjct: 1149 NWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING 1192
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/27 (88%), Positives = 25/27 (92%)
Query: 3 ACTEPATHNALAKIYIDSNNNPERFLK 29
C EPATHNALAKIYIDSNNNPERFL+
Sbjct: 869 GCEEPATHNALAKIYIDSNNNPERFLR 895
>sp|P49951|CLH1_BOVIN Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 SV=1
Length = 1675
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 70/104 (67%), Positives = 92/104 (88%)
Query: 33 VDHLSKTPFYVLRCNEPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATE 92
+ +L + + RCNEP VWSQLAKAQLQKG+VKE+IDS+IKADDPS+YM+VV+ ++ +
Sbjct: 1089 IGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSG 1148
Query: 93 SWEDLVRYLQMARKKARESYIESELIYAYARTNRLADLEEFISG 136
+WE+LV+YLQMARKKARESY+E+ELI+A A+TNRLA+LEEFI+G
Sbjct: 1149 NWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING 1192
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/27 (88%), Positives = 25/27 (92%)
Query: 3 ACTEPATHNALAKIYIDSNNNPERFLK 29
C EPATHNALAKIYIDSNNNPERFL+
Sbjct: 869 GCEEPATHNALAKIYIDSNNNPERFLR 895
>sp|P11442|CLH1_RAT Clathrin heavy chain 1 OS=Rattus norvegicus GN=Cltc PE=1 SV=3
Length = 1675
Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 70/104 (67%), Positives = 92/104 (88%)
Query: 33 VDHLSKTPFYVLRCNEPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATE 92
+ +L + + RCNEP VWSQLAKAQLQKG+VKE+IDS+IKADDPS+YM+VV+ ++ +
Sbjct: 1089 IGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSG 1148
Query: 93 SWEDLVRYLQMARKKARESYIESELIYAYARTNRLADLEEFISG 136
+WE+LV+YLQMARKKARESY+E+ELI+A A+TNRLA+LEEFI+G
Sbjct: 1149 NWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING 1192
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/27 (88%), Positives = 25/27 (92%)
Query: 3 ACTEPATHNALAKIYIDSNNNPERFLK 29
C EPATHNALAKIYIDSNNNPERFL+
Sbjct: 869 GCEEPATHNALAKIYIDSNNNPERFLR 895
>sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5
Length = 1675
Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 70/104 (67%), Positives = 92/104 (88%)
Query: 33 VDHLSKTPFYVLRCNEPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATE 92
+ +L + + RCNEP VWSQLAKAQLQKG+VKE+IDS+IKADDPS+YM+VV+ ++ +
Sbjct: 1089 IGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSG 1148
Query: 93 SWEDLVRYLQMARKKARESYIESELIYAYARTNRLADLEEFISG 136
+WE+LV+YLQMARKKARESY+E+ELI+A A+TNRLA+LEEFI+G
Sbjct: 1149 NWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING 1192
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/27 (88%), Positives = 25/27 (92%)
Query: 3 ACTEPATHNALAKIYIDSNNNPERFLK 29
C EPATHNALAKIYIDSNNNPERFL+
Sbjct: 869 GCEEPATHNALAKIYIDSNNNPERFLR 895
>sp|P34574|CLH_CAEEL Probable clathrin heavy chain 1 OS=Caenorhabditis elegans GN=chc-1
PE=3 SV=1
Length = 1681
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/110 (60%), Positives = 86/110 (78%)
Query: 33 VDHLSKTPFYVLRCNEPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATE 92
V++L + + +CN+ VW+ LAKAQLQ+ LVKE++DSFIKADDP AYM+VV TE
Sbjct: 1091 VNNLDRAYEFAEKCNQSDVWASLAKAQLQQNLVKEAVDSFIKADDPGAYMEVVNKCSQTE 1150
Query: 93 SWEDLVRYLQMARKKARESYIESELIYAYARTNRLADLEEFISGEGFFEI 142
WEDLVRYLQMARKK+RESYIE+EL++A A+T RL +LEEFI+G +I
Sbjct: 1151 HWEDLVRYLQMARKKSRESYIETELVFALAKTGRLTELEEFIAGPNHAQI 1200
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/27 (81%), Positives = 24/27 (88%)
Query: 3 ACTEPATHNALAKIYIDSNNNPERFLK 29
T+ ATHNA+AKIYIDSNNNPERFLK
Sbjct: 871 GATDAATHNAMAKIYIDSNNNPERFLK 897
>sp|P53675|CLH2_HUMAN Clathrin heavy chain 2 OS=Homo sapiens GN=CLTCL1 PE=1 SV=2
Length = 1640
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 89/104 (85%)
Query: 33 VDHLSKTPFYVLRCNEPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATE 92
+ +L + + RCNEP VWSQLA+AQLQK LVKE+I+S+I+ DDPS+Y++VV+++ +
Sbjct: 1089 IGNLDRAYEFAERCNEPAVWSQLAQAQLQKDLVKEAINSYIRGDDPSSYLEVVQSASRSN 1148
Query: 93 SWEDLVRYLQMARKKARESYIESELIYAYARTNRLADLEEFISG 136
+WEDLV++LQMARKK RESYIE+ELI+A A+T+R+++LE+FI+G
Sbjct: 1149 NWEDLVKFLQMARKKGRESYIETELIFALAKTSRVSELEDFING 1192
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/27 (81%), Positives = 24/27 (88%)
Query: 3 ACTEPATHNALAKIYIDSNNNPERFLK 29
C EPATHNALAKIYIDSNN+PE FL+
Sbjct: 869 GCEEPATHNALAKIYIDSNNSPECFLR 895
>sp|Q2QYW2|CLH2_ORYSJ Clathrin heavy chain 2 OS=Oryza sativa subsp. japonica
GN=Os12g0104800 PE=3 SV=1
Length = 1708
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 71/93 (76%)
Query: 42 YVLRCNEPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATESWEDLVRYL 101
+ R E VWSQ+AKAQL++GLV E+I+SFI+ADD + ++DV+ + ++DLV+YL
Sbjct: 1112 FAFRVEEDAVWSQVAKAQLREGLVSEAIESFIRADDATHFLDVIRAAEEANVYDDLVKYL 1171
Query: 102 QMARKKARESYIESELIYAYARTNRLADLEEFI 134
M R+KARE ++ ELI+AYA+ +RL+D+EEFI
Sbjct: 1172 LMVRQKAREPKVDGELIFAYAKIDRLSDIEEFI 1204
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 20/34 (58%), Gaps = 8/34 (23%)
Query: 9 THNALAKIYIDSNNNPERFLKFFLVDHLSKTPFY 42
HNAL KI IDSNNNPE F L+ PFY
Sbjct: 889 VHNALGKIIIDSNNNPEHF--------LTTNPFY 914
>sp|Q2RBN7|CLH1_ORYSJ Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica
GN=Os11g0104900 PE=3 SV=1
Length = 1708
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 71/93 (76%)
Query: 42 YVLRCNEPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATESWEDLVRYL 101
+ R E VWSQ+AKAQL++GLV E+I+SFI+ADD + ++DV+ + ++DLV+YL
Sbjct: 1112 FAFRVEEDAVWSQVAKAQLREGLVSEAIESFIRADDATHFLDVIRAAEEANVYDDLVKYL 1171
Query: 102 QMARKKARESYIESELIYAYARTNRLADLEEFI 134
M R+KARE ++ ELI+AYA+ +RL+D+EEFI
Sbjct: 1172 LMVRQKAREPKVDGELIFAYAKIDRLSDIEEFI 1204
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 20/34 (58%), Gaps = 8/34 (23%)
Query: 9 THNALAKIYIDSNNNPERFLKFFLVDHLSKTPFY 42
HNAL KI IDSNNNPE F L+ PFY
Sbjct: 889 VHNALGKIIIDSNNNPEHF--------LTTNPFY 914
>sp|Q0WNJ6|CLAH1_ARATH Clathrin heavy chain 1 OS=Arabidopsis thaliana GN=CHC1 PE=1 SV=1
Length = 1705
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 70/93 (75%)
Query: 42 YVLRCNEPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATESWEDLVRYL 101
+ R E VWSQ+AKAQL++GLV ++I+SFI+ADD + +++V+ S T ++DLVRYL
Sbjct: 1112 FAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDTTQFLEVIRASEDTNVYDDLVRYL 1171
Query: 102 QMARKKARESYIESELIYAYARTNRLADLEEFI 134
M R+K +E ++SELIYAYA+ RL ++EEFI
Sbjct: 1172 LMVRQKVKEPKVDSELIYAYAKIERLGEIEEFI 1204
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/20 (80%), Positives = 16/20 (80%)
Query: 9 THNALAKIYIDSNNNPERFL 28
HNAL KI IDSNNNPE FL
Sbjct: 889 VHNALGKIIIDSNNNPEHFL 908
>sp|Q0WLB5|CLAH2_ARATH Clathrin heavy chain 2 OS=Arabidopsis thaliana GN=CHC2 PE=1 SV=1
Length = 1703
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 72/93 (77%)
Query: 42 YVLRCNEPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATESWEDLVRYL 101
+ R E VWSQ+AKAQL++GLV ++I+SFI+ADD + +++V+ S T+ ++DLV+YL
Sbjct: 1112 FAFRVEEDSVWSQVAKAQLREGLVSDAIESFIRADDATHFLEVIRVSEDTDVYDDLVKYL 1171
Query: 102 QMARKKARESYIESELIYAYARTNRLADLEEFI 134
M R+K +E ++SELIYAYA+ +RL ++EEFI
Sbjct: 1172 LMVRQKVKEPKVDSELIYAYAKIDRLGEIEEFI 1204
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/20 (80%), Positives = 16/20 (80%)
Query: 9 THNALAKIYIDSNNNPERFL 28
HNAL KI IDSNNNPE FL
Sbjct: 889 VHNALGKIIIDSNNNPEHFL 908
>sp|P25870|CLH_DICDI Clathrin heavy chain OS=Dictyostelium discoideum GN=chcA PE=1 SV=1
Length = 1694
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 69/92 (75%)
Query: 45 RCNEPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATESWEDLVRYLQMA 104
RCN+ V+S+L AQL+ +VKE I+SFIKA+D Y +VV + + +EDLV++LQM
Sbjct: 1102 RCNQTEVYSKLGVAQLKAEMVKECIESFIKANDTEHYQEVVAAAERKDEYEDLVKFLQMC 1161
Query: 105 RKKARESYIESELIYAYARTNRLADLEEFISG 136
RKK +E IESELI+AYA+ N+LA++E+FI+
Sbjct: 1162 RKKIKEPAIESELIFAYAKVNKLAEMEDFINS 1193
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/23 (86%), Positives = 20/23 (86%)
Query: 6 EPATHNALAKIYIDSNNNPERFL 28
EPA HNALAKIYIDSN NPE FL
Sbjct: 873 EPAIHNALAKIYIDSNKNPEAFL 895
>sp|Q10161|CLH_SCHPO Probable clathrin heavy chain OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=chc1 PE=1 SV=1
Length = 1666
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 21 NNNPERFLKFFLVD--HLSKTPFYVLRCNEPGVWSQLAKAQLQKGLVKESIDSFIKADDP 78
+N E+ +K + D L + Y +P VWS+LAKAQL + ++I+S++KADDP
Sbjct: 1071 HNKHEQAMKVLVEDIVSLDRAQDYAETVEQPEVWSRLAKAQLDGIRIPDAIESYLKADDP 1130
Query: 79 SAYMDVVETSHATESWEDLVRYLQMARKKARESYIESELIYAYARTNRLADLEEFISGEG 138
S Y +V+E + +E+L++YL MAR K E ++S L+ AYA+TN+L ++E F+ G
Sbjct: 1131 SNYSEVIELASRAGKYEELIKYLLMARSKMHEPDVDSALLIAYAKTNQLTEMETFLIGSN 1190
Query: 139 FFEI 142
++
Sbjct: 1191 VADV 1194
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/22 (81%), Positives = 20/22 (90%)
Query: 8 ATHNALAKIYIDSNNNPERFLK 29
A ++ALAKIYIDSNNNPE FLK
Sbjct: 871 AIYDALAKIYIDSNNNPEVFLK 892
>sp|P22137|CLH_YEAST Clathrin heavy chain OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=CHC1 PE=1 SV=1
Length = 1653
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Query: 26 RFLKFFLVDHLS--KTPFYVLRCNEPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMD 83
+ LK + D +S + Y + N P +WSQ+ AQL + ++I+S+IKA+DPS Y +
Sbjct: 1086 KALKVLIEDIMSLDRAASYADKINTPELWSQIGTAQLDGLRIPDAIESYIKAEDPSNYEN 1145
Query: 84 VVETSHATESWEDLVRYLQMARKKARESYIESELIYAYARTNRLADLEEFISG 136
V++ + +E+L+ +L MARK +E I+ LI AYA N++ ++E ++G
Sbjct: 1146 VIDIAEQAGKYEELIPFLLMARKTLKEPKIDGALILAYAELNKIHEIENLLAG 1198
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 3 ACTEPATHNALAKIYIDSNNNPERFLK 29
+ A +NALAKIYIDSNN+PE+FLK
Sbjct: 875 GIQDQAVYNALAKIYIDSNNSPEKFLK 901
>sp|Q17Y79|ATPG_HELAH ATP synthase gamma chain OS=Helicobacter acinonychis (strain
Sheeba) GN=atpG PE=3 SV=1
Length = 301
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 48 EPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATESWEDLVRYLQMARKK 107
E + LAK ++ L IDS A + SA M ++T AT + +DLV+ L ++ K
Sbjct: 225 EDEILDSLAKKYVEYSLYYALIDSL--AAEHSARMQAMDT--ATNNAKDLVKNLTISYNK 280
Query: 108 ARESYIESELI 118
AR+ I +EL+
Sbjct: 281 ARQEAITTELV 291
>sp|Q0SR12|RF2_CLOPS Peptide chain release factor 2 OS=Clostridium perfringens (strain
SM101 / Type A) GN=prfB PE=3 SV=1
Length = 364
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
Query: 11 NALAKIYIDSNNNPERFLKFFLVDHLSKTPFYVLRCNEPGVWSQLAKAQ---LQKGLVKE 67
N L+K++ NN E L K+ L+ E G W + KAQ + VK+
Sbjct: 7 NQLSKLHELKNNLKEMGASLDLASLEKKSAELELKMQEAGFWDDVQKAQEVTQEAKRVKD 66
Query: 68 SIDSFI----KADDPSAYMDVVETSHATESWEDLVRYLQMARKKARESYIESELIYAYAR 123
ID F + DD +++E + E+ ++++ ++ K+ IE+ L Y R
Sbjct: 67 KIDKFKNLNERIDDVEVLKELME-ENDEETAKEIISEVKALSKEIDTLKIETILSGEYDR 125
Query: 124 TNRLADLEEFISG 136
N + L + G
Sbjct: 126 NNAILTLHTGVGG 138
>sp|Q1CSD4|ATPG_HELPH ATP synthase gamma chain OS=Helicobacter pylori (strain HPAG1)
GN=atpG PE=3 SV=1
Length = 301
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 48 EPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATESWEDLVRYLQMARKK 107
E + LA+ ++ L IDS A + SA M ++T AT + +DLV+ L ++ K
Sbjct: 225 EDEILDSLAEKYVEYSLYYALIDSL--AAEHSARMQAMDT--ATNNAKDLVKTLTISYNK 280
Query: 108 ARESYIESELI 118
AR+ I +EL+
Sbjct: 281 ARQEAITTELV 291
>sp|B6JMX3|ATPG_HELP2 ATP synthase gamma chain OS=Helicobacter pylori (strain P12)
GN=atpG PE=3 SV=1
Length = 301
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 48 EPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATESWEDLVRYLQMARKK 107
E + LA+ ++ L IDS A + SA M ++T AT + +DLV+ L ++ K
Sbjct: 225 EDEILDSLAEKYVEYSLYYALIDSL--AAEHSARMQAMDT--ATNNAKDLVKTLTISYNK 280
Query: 108 ARESYIESELI 118
AR+ I +EL+
Sbjct: 281 ARQEAITTELV 291
>sp|B2UUP1|ATPG_HELPS ATP synthase gamma chain OS=Helicobacter pylori (strain Shi470)
GN=atpG PE=3 SV=1
Length = 301
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 48 EPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATESWEDLVRYLQMARKK 107
E + LA+ ++ L IDS A + SA M ++T AT + +DLV+ L ++ K
Sbjct: 225 EDEILDSLAEKYVEYSLYYALIDSL--AAEHSARMQAMDT--ATNNAKDLVKTLTISYNK 280
Query: 108 ARESYIESELI 118
AR+ I +EL+
Sbjct: 281 ARQEAITTELV 291
>sp|Q9ZK80|ATPG_HELPJ ATP synthase gamma chain OS=Helicobacter pylori (strain J99)
GN=atpG PE=3 SV=1
Length = 301
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 48 EPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATESWEDLVRYLQMARKK 107
E + LA+ ++ L IDS A + SA M ++T AT + +DLV+ L ++ K
Sbjct: 225 EDEILDSLAEKYVEYSLYYALIDSL--AAEHSARMQAMDT--ATNNAKDLVKTLTISYNK 280
Query: 108 ARESYIESELI 118
AR+ I +EL+
Sbjct: 281 ARQEAITTELV 291
>sp|Q01964|PEX2_PICPA Peroxisomal biogenesis factor 2 OS=Komagataella pastoris GN=PEX2
PE=3 SV=1
Length = 461
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 41 FYVLRCNEPGVWSQLAKAQLQKGLVKESIDSFIKADDPSA 80
++ LRCNEP W ++ ++ L +++++ + +D S+
Sbjct: 346 WHCLRCNEPASWCRVYTGDVEDALRQKAVEEVTEDEDASS 385
>sp|P56082|ATPG_HELPY ATP synthase gamma chain OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=atpG PE=3 SV=1
Length = 301
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 48 EPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATESWEDLVRYLQMARKK 107
E + LA+ ++ L IDS A + SA M ++T AT + +DLV+ L ++ K
Sbjct: 225 EDEILDSLAEKYVEYSLYYALIDSL--AAEHSARMQAMDT--ATNNAKDLVKTLTISYNK 280
Query: 108 ARESYIESELI 118
AR+ I +EL+
Sbjct: 281 ARQEAITTELV 291
>sp|B5Z8D1|ATPG_HELPG ATP synthase gamma chain OS=Helicobacter pylori (strain G27)
GN=atpG PE=3 SV=1
Length = 301
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 48 EPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATESWEDLVRYLQMARKK 107
E + LA+ ++ L IDS A + SA M ++T AT + +DLV+ L ++ K
Sbjct: 225 EDEILDSLAEKYVEYSLYYALIDSL--AAEHSARMQAMDT--ATNNAKDLVKTLTISYNK 280
Query: 108 ARESYIESELI 118
AR+ I +EL+
Sbjct: 281 ARQEAITTELV 291
>sp|Q0TNE1|RF2_CLOP1 Peptide chain release factor 2 OS=Clostridium perfringens (strain
ATCC 13124 / NCTC 8237 / Type A) GN=prfB PE=3 SV=2
Length = 362
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
Query: 11 NALAKIYIDSNNNPERFLKFFLVDHLSKTPFYVLRCNEPGVWSQLAKAQ---LQKGLVKE 67
N L+K++ NN E L K+ L+ E G W + KAQ + VK+
Sbjct: 5 NQLSKLHELKNNLKEMGASLCLASLEKKSAELELKMQEAGFWDDVQKAQEVTQEAKRVKD 64
Query: 68 SIDSFI----KADDPSAYMDVVETSHATESWEDLVRYLQMARKKARESYIESELIYAYAR 123
ID F + DD +++E + E+ ++++ ++ K+ IE+ L Y R
Sbjct: 65 KIDKFKNLNERIDDVEVLKELME-ENDEETAKEIISEVKALSKEIDTLKIETILSGEYDR 123
Query: 124 TNRLADLEEFISG 136
+ + L + G
Sbjct: 124 NDAILTLHTGVGG 136
>sp|P24029|CAPSD_ADVG Capsid protein VP2 OS=Aleutian mink disease parvovirus (strain G)
PE=3 SV=2
Length = 647
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 28 LKFFLVDHLSK---TPFYVLRCNEPGVWSQLAKAQLQKGLVKE-SIDSFIKADDPSAYMD 83
L+FF+ D + TP+Y++ N GVW Q K L E S+ + + D
Sbjct: 98 LEFFVYDDFHQQVMTPWYIVDSNAWGVWMSPKDFQQMKTLCSEISLVTLEQEIDNVTIKT 157
Query: 84 VVETSHATESWE----DLVRYLQMA 104
V ET+ S + DL LQ+A
Sbjct: 158 VTETNQGNASTKQFNNDLTASLQVA 182
>sp|B3WEJ1|ADDA_LACCB ATP-dependent helicase/nuclease subunit A OS=Lactobacillus casei
(strain BL23) GN=addA PE=3 SV=1
Length = 1234
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 77 DPSAYMDVVETSHATESWEDLVRYLQMARKKARESYIESELIYAYARTNRLAD 129
DP AY++ + T +A E WE R K + I + L A A N+L +
Sbjct: 192 DPKAYLEGLATPYAPEKWEATFSQQIWPRVKGQLLQIATSLTQASALANQLPN 244
>sp|Q038V7|ADDA_LACC3 ATP-dependent helicase/nuclease subunit A OS=Lactobacillus casei
(strain ATCC 334) GN=addA PE=3 SV=1
Length = 1234
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 77 DPSAYMDVVETSHATESWEDLVRYLQMARKKARESYIESELIYAYARTNRLAD 129
DP AY++ + T +A E WE R K + I + L A A N+L +
Sbjct: 192 DPKAYLEGLATPYAPEKWEATFSQQIWPRVKGQLLQIATSLTQASALANQLPN 244
>sp|P33149|PDC1_KLUMA Pyruvate decarboxylase OS=Kluyveromyces marxianus GN=PDC1 PE=3 SV=1
Length = 564
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 19 DSNNNPERFLKFFLVDHLSKTPFYVLRCNEPGVWSQLAKAQLQKGLVKESIDSFIKADDP 78
D N+ P + ++S+ P Y+ G+ + L ++ L++ ID +K +DP
Sbjct: 141 DINSAPSEIDRCIRTTYISQRPVYL------GLPANLVDLKVPASLLETPIDLSLKPNDP 194
Query: 79 SAYMDVVET 87
A +V+ET
Sbjct: 195 EAENEVLET 203
>sp|Q5N1I3|SYGA_SYNP6 Glycine--tRNA ligase alpha subunit OS=Synechococcus sp. (strain
ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=glyQ PE=3 SV=1
Length = 292
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 50 GVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATESWEDLVRYLQMARKKAR 109
G++ Q A ++KGLV S+D +K +D TE + R MAR+ A+
Sbjct: 214 GLYEQEATQLIEKGLVHPSLDYVLKCSHSFNLLDARGLISVTERTRYIGRIRNMARQVAK 273
>sp|Q31KD2|SYGA_SYNE7 Glycine--tRNA ligase alpha subunit OS=Synechococcus elongatus
(strain PCC 7942) GN=glyQ PE=3 SV=1
Length = 292
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 50 GVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATESWEDLVRYLQMARKKAR 109
G++ Q A ++KGLV S+D +K +D TE + R MAR+ A+
Sbjct: 214 GLYEQEATQLIEKGLVHPSLDYVLKCSHSFNLLDARGLISVTERTRYIGRIRNMARQVAK 273
>sp|Q1ZXR0|Y8444_DICDI TNF receptor-associated factor family protein DDB_G0268444
OS=Dictyostelium discoideum GN=DDB_G0268444 PE=2 SV=1
Length = 502
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 17 YIDSNNNPERFLKFFLVDHLSKTPFYVLRCNEPGVWSQLAKAQLQKGLVKE 67
Y D++ R L+ +H + P ++++C+E G QL ++QL+ + K+
Sbjct: 172 YCDTDGITSRSLE----NHYKECPKFIVKCSENGCTVQLERSQLESHIEKQ 218
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,802,710
Number of Sequences: 539616
Number of extensions: 1905569
Number of successful extensions: 5298
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 5252
Number of HSP's gapped (non-prelim): 67
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)