RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1645
         (143 letters)



>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 336

 Score = 32.9 bits (75), Expect = 0.010
 Identities = 18/136 (13%), Positives = 42/136 (30%), Gaps = 6/136 (4%)

Query: 4   CTEPATHNALAKIYIDSNNNPERFLKFFLVDHLSKTPF--YVLRCNEPGVWSQLAKAQLQ 61
           C +   ++A   +Y + +N     L   LV             + N    W ++  A + 
Sbjct: 24  CYDEKMYDAAKLLYNNVSNFGR--LASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD 81

Query: 62  KGLVK-ESIDSFIKADDPSAYMDVVETSHATESWEDLVRYLQMA-RKKARESYIESELIY 119
               +   +             +++        +E+L+  L+ A   +     + +EL  
Sbjct: 82  GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 141

Query: 120 AYARTNRLADLEEFIS 135
            Y++       E    
Sbjct: 142 LYSKFKPQKMREHLEL 157



 Score = 27.1 bits (60), Expect = 0.80
 Identities = 2/26 (7%), Positives = 9/26 (34%), Gaps = 2/26 (7%)

Query: 6   EPATHNALAKIYIDSNN--NPERFLK 29
             + + +L  ++I   +       + 
Sbjct: 279 NKSVNESLNNLFITEEDYQALRTSID 304


>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human
           immunodeficiency virus type 2 [TaxId: 11709]}
          Length = 427

 Score = 26.4 bits (58), Expect = 1.2
 Identities = 8/37 (21%), Positives = 17/37 (45%)

Query: 26  RFLKFFLVDHLSKTPFYVLRCNEPGVWSQLAKAQLQK 62
           +        HL +     +   E   W++LA+A+L++
Sbjct: 267 QLYPGIKTKHLCRLISGKMTLTEEVQWTELAEAELEE 303


>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 272

 Score = 24.4 bits (52), Expect = 5.4
 Identities = 7/30 (23%), Positives = 18/30 (60%)

Query: 89  HATESWEDLVRYLQMARKKARESYIESELI 118
           +A+++  +++  L +   + R++ I  ELI
Sbjct: 234 NASKNASEMIDKLTLTFNRTRQAVITKELI 263


>d2nn6i2 b.84.4.2 (I:6-60) Exosome component 1, EXOSC1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 55

 Score = 22.8 bits (49), Expect = 6.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 126 RLADLEEFISGEGFFE 141
           RL +LEE   G G + 
Sbjct: 8   RLCNLEEGSPGSGTYT 23


>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase
          {Salmonella typhimurium [TaxId: 90371]}
          Length = 361

 Score = 24.4 bits (51), Expect = 7.1
 Identities = 4/31 (12%), Positives = 13/31 (41%), Gaps = 2/31 (6%)

Query: 65 VKESIDSFIKADDPSAYMDVVETSHATESWE 95
          +++ + +   A +   Y  V+     + + E
Sbjct: 38 IRQQLTALATASEG--YTSVLLQGSGSYAVE 66


>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase,
          regulatory (C-terminal) domain {Escherichia coli
          [TaxId: 562]}
          Length = 84

 Score = 23.1 bits (50), Expect = 8.7
 Identities = 10/46 (21%), Positives = 17/46 (36%)

Query: 47 NEPGVWSQLAKAQLQKGLVKESIDSFIKADDPSAYMDVVETSHATE 92
          N PGV + L K   ++G+   +      A      +D+       E
Sbjct: 20 NRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAE 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0678    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 536,869
Number of extensions: 22563
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 13
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)