BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16454
(304 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 281 bits (718), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 126/175 (72%), Positives = 150/175 (85%)
Query: 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMV 63
EPEH+RKLFIGGLDYRT+ E+LK HFE WG++VDVVVMKDP+TK+SRGFGFITYS AHMV
Sbjct: 12 EPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMV 71
Query: 64 DDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQF 123
DDAQ ARPH +D +VVEPKRAVPRTEI RPEAGATVKKLFVG +++++ E DL++YF Q+
Sbjct: 72 DDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQY 131
Query: 124 GEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSK 178
G V S A+V +KET KKRGF FVE++DYDPVDK CL H ++GK +DVKKAL K
Sbjct: 132 GTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKALPK 186
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 271 bits (693), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 121/178 (67%), Positives = 151/178 (84%)
Query: 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMV 63
EPE LRKLFIGGLDYRT+ + LK+HFE WG++VDVVVMKDP+TK+SRGFGFITYS ++M+
Sbjct: 19 EPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMI 78
Query: 64 DDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQF 123
D+AQ ARPH ID + VEPKRAVPR EI+ P AGATVKKLFVG LRDD EE L+EYF F
Sbjct: 79 DNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDF 138
Query: 124 GEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEM 181
G++ SV +V++K+TGKKRGF F+E++DYDPVDK L+ TH +K K +DVKKA++K++M
Sbjct: 139 GQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQDM 196
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 265 bits (676), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 117/176 (66%), Positives = 146/176 (82%)
Query: 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMV 63
EPEH+RKLFIGGLDYRT+ E LK+HFE WG++VDVVVMKDP+TK+SRGFGFITYS + M+
Sbjct: 26 EPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMI 85
Query: 64 DDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQF 123
D+AQ +RPH ID +VVEPKRAVPR +I+ P AGATVKKLFVG+L+DD E+ +++YF F
Sbjct: 86 DEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHF 145
Query: 124 GEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKE 179
G + + +V +KETGKKRGF FVE++DYDPVDK L+ H + GK VDVKKAL K+
Sbjct: 146 GNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQ 201
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 106/199 (53%), Positives = 146/199 (73%), Gaps = 1/199 (0%)
Query: 1 ITKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSA 60
+ +E E RKLFIGGL + T+ E+L++ +E WG + D VVM+DP +K+SRGFGF+T+S
Sbjct: 1 MEREKEQFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCM 60
Query: 61 HMVDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYF 120
+ VD A +ARPHTID +VVEPKRAV R E +P A TVKKLFVG +++D E L+EYF
Sbjct: 61 NEVDAAMSARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYF 120
Query: 121 GQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEE 180
++G++ S ++T+K++GKKRGFGFV +ND+DPVDK L+ H + G +V+KALSK+E
Sbjct: 121 EEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSKQE 180
Query: 181 MAKLK-TRGGFGGNQGGGD 198
M ++ TR GGN G GD
Sbjct: 181 MQDVQNTRNNRGGNFGFGD 199
Score = 34.7 bits (78), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 35/190 (18%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACL 159
+KLF+G L + TEE L+ ++ Q+G++T ++ + + + RGFGFV ++ + VD A
Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68
Query: 160 KGTHLVKGK------------------KVDVKKALS---KEEMAKLKTRGGFG--GNQGG 196
H + G+ V VKK KE+ + R F G
Sbjct: 69 ARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIES 128
Query: 197 GDPWGNNGGGGWGGGG------PGPWD----QGGSSWGGNSGGGWGGNSGGGWGGNSGGG 246
+ + G G G P D Q + G++ S
Sbjct: 129 TEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSKQEM--QDVQN 186
Query: 247 WGGNSGGGWG 256
N GG +G
Sbjct: 187 TRNNRGGNFG 196
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 228 bits (581), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 104/199 (52%), Positives = 146/199 (73%), Gaps = 1/199 (0%)
Query: 1 ITKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSA 60
+ +E E RKLFIGGL + T+ E+L++++E WG + D VVM+DP +K+SRGFGF+T+S
Sbjct: 1 MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCM 60
Query: 61 HMVDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYF 120
+ VD A A RPHTID +VVEPKRAV R E +P A TVKKLFVG +++D E L+EYF
Sbjct: 61 NEVDAAMATRPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYF 120
Query: 121 GQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEE 180
++G++ S+ ++T+K++GKKRGF FV ++D+DPVDK L+ H + G +V+KALSK+E
Sbjct: 121 EEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQE 180
Query: 181 MAKLK-TRGGFGGNQGGGD 198
M ++ TR GGN G GD
Sbjct: 181 MQDVQNTRNNRGGNFGFGD 199
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 225 bits (573), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 99/194 (51%), Positives = 148/194 (76%), Gaps = 1/194 (0%)
Query: 1 ITKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSA 60
+ +E E RKLFIGGL ++T+ E+L++++E WG + D VVM+DP +K+SRGFGF+T+SS
Sbjct: 1 MEREKEQFRKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 60
Query: 61 HMVDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYF 120
VD A AARPH+ID +VVEPKRAV R E +P A TVKKLFVG +++D E L++YF
Sbjct: 61 AEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 121 GQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEE 180
++G++ ++ ++T++++GKKRGFGFV ++D+DPVDK L+ H + G +V+KALS++E
Sbjct: 121 AEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 180
Query: 181 MAKLK-TRGGFGGN 193
M +++ +R G GGN
Sbjct: 181 MQEVQSSRSGRGGN 194
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 223 bits (569), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 99/194 (51%), Positives = 147/194 (75%), Gaps = 1/194 (0%)
Query: 1 ITKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSA 60
+ +E E RKLFIGGL + T+ E+L++++E WG + D VVM+DP +K+SRGFGF+T+SS
Sbjct: 1 MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 60
Query: 61 HMVDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYF 120
VD A AARPH+ID +VVEPKRAV R E +P A TVKKLFVG +++D E L++YF
Sbjct: 61 AEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 121 GQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEE 180
++G++ ++ ++T++++GKKRGFGFV ++D+DPVDK L+ H + G +V+KALS++E
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQE 180
Query: 181 MAKLK-TRGGFGGN 193
M +++ +R G GGN
Sbjct: 181 MQEVQSSRSGRGGN 194
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 222 bits (566), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 98/180 (54%), Positives = 134/180 (74%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
KEPE LRKLFIGGL + T+ E+L+SHFE WG + D VVM+DP TK+SRGFGF+TY++
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQ 122
VD A ARPH +D +VVEPKRAV R + RP A TVKK+FVG +++D E L++YF Q
Sbjct: 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
Query: 123 FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMA 182
+G++ + ++T++ +GKKRGF FV ++D+D VDK ++ H V G +V+KALSK+EMA
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYD 152
P+ ++KLF+G L + T+E L+ +F Q+G +T ++ + T + RGFGFV Y +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 153 PVDKACLKGTHLVKGKKVDVKKALSKEEMAK 183
VD A H V G+ V+ K+A+S+E+ +
Sbjct: 67 EVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 222 bits (566), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 98/180 (54%), Positives = 134/180 (74%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
KEPE LRKLFIGGL + T+ E+L+SHFE WG + D VVM+DP TK+SRGFGF+TY++
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQ 122
VD A ARPH +D +VVEPKRAV R + RP A TVKK+FVG +++D E L++YF Q
Sbjct: 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
Query: 123 FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMA 182
+G++ + ++T++ +GKKRGF FV ++D+D VDK ++ H V G +V+KALSK+EMA
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYD 152
P+ ++KLF+G L + T+E L+ +F Q+G +T ++ + T + RGFGFV Y +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 153 PVDKACLKGTHLVKGKKVDVKKALSKEEMAK 183
VD A H V G+ V+ K+A+S+E+ +
Sbjct: 67 EVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 222 bits (566), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 98/180 (54%), Positives = 134/180 (74%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
KEPE LRKLFIGGL + T+ E+L+SHFE WG + D VVM+DP TK+SRGFGF+TY++
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQ 122
VD A ARPH +D +VVEPKRAV R + RP A TVKK+FVG +++D E L++YF Q
Sbjct: 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
Query: 123 FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMA 182
+G++ + ++T++ +GKKRGF FV ++D+D VDK ++ H V G +V+KALSK+EMA
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYD 152
P+ ++KLF+G L + T+E L+ +F Q+G +T ++ + T + RGFGFV Y +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 153 PVDKACLKGTHLVKGKKVDVKKALSKEEMAK 183
VD A H V G+ V+ K+A+S+E+ +
Sbjct: 67 EVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 222 bits (565), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 99/192 (51%), Positives = 146/192 (76%), Gaps = 1/192 (0%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
+E E RKLFIGGL + T+ E+L++++E WG + D VVM+DP +K+SRGFGF+T+SS
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQ 122
VD A AARPH+ID +VVEPKRAV R E +P A TVKKLFVG +++D E L++YF +
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 123 FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMA 182
+G++ ++ ++T++++GKKRGFGFV ++D+DPVDK L+ H + G +V+KALS++EM
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194
Query: 183 KLK-TRGGFGGN 193
+++ +R G GGN
Sbjct: 195 EVQSSRSGRGGN 206
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 222 bits (565), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 99/192 (51%), Positives = 146/192 (76%), Gaps = 1/192 (0%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
+E E RKLFIGGL + T+ E+L++++E WG + D VVM+DP +K+SRGFGF+T+SS
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQ 122
VD A AARPH+ID +VVEPKRAV R E +P A TVKKLFVG +++D E L++YF +
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 123 FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMA 182
+G++ ++ ++T++++GKKRGFGFV ++D+DPVDK L+ H + G +V+KALS++EM
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194
Query: 183 KLK-TRGGFGGN 193
+++ +R G GGN
Sbjct: 195 EVQSSRSGRGGN 206
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 222 bits (565), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 99/192 (51%), Positives = 146/192 (76%), Gaps = 1/192 (0%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
+E E RKLFIGGL + T+ E+L++++E WG + D VVM+DP +K+SRGFGF+T+SS
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQ 122
VD A AARPH+ID +VVEPKRAV R E +P A TVKKLFVG +++D E L++YF +
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 123 FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMA 182
+G++ ++ ++T++++GKKRGFGFV ++D+DPVDK L+ H + G +V+KALS++EM
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKALSRQEMQ 194
Query: 183 KLK-TRGGFGGN 193
+++ +R G GGN
Sbjct: 195 EVQSSRSGRGGN 206
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 221 bits (563), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 99/192 (51%), Positives = 146/192 (76%), Gaps = 1/192 (0%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
+E E RKLFIGGL + T+ E+L++++E WG + D VVM+DP +K+SRGFGF+T+SS
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQ 122
VD A AARPH+ID +VVEPKRAV R E +P A TVKKLFVG +++D E L++YF +
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 123 FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMA 182
+G++ ++ ++T++++GKKRGFGFV ++D+DPVDK L+ H + G +V+KALS++EM
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKALSRQEMQ 194
Query: 183 KLK-TRGGFGGN 193
+++ +R G GGN
Sbjct: 195 EVQSSRSGRGGN 206
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 221 bits (562), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 97/180 (53%), Positives = 133/180 (73%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
KEPE LRKLFIGGL + T+ E+L+SHFE WG + D VVM+DP TK+SRGFGF+TY++
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQ 122
VD A ARPH +D +VVEPKRAV R + RP A TVKK+FVG +++D E L++YF Q
Sbjct: 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
Query: 123 FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMA 182
+G++ + ++T++ +GKKRGF FV ++D+D VDK ++ H V G +V+KAL K+EMA
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQEMA 187
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYD 152
P+ ++KLF+G L + T+E L+ +F Q+G +T ++ + T + RGFGFV Y +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 153 PVDKACLKGTHLVKGKKVDVKKALSKEEMAK 183
VD A H V G+ V+ K+A+S+E+ +
Sbjct: 67 EVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 220 bits (561), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 98/180 (54%), Positives = 134/180 (74%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
KEPE LRKLFIGGL + T+ E+L+SHFE WG + D VVM+DP TK+SRGFGF+TY++
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQ 122
VD A ARPH +D +VVEPKRAV R + RP A TVKK+FVG +++D E L++YF Q
Sbjct: 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
Query: 123 FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMA 182
+G++ + ++T++ +GKKRGF FV ++D+D VDK ++ H V G +V+KALSK+EMA
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 53/88 (60%)
Query: 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYD 152
P+ ++KLF+G L + T+E L+ +F Q+G +T ++ + T + RGFGFV Y +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 153 PVDKACLKGTHLVKGKKVDVKKALSKEE 180
VD A H V G+ V+ K+A+S+E+
Sbjct: 67 EVDAAMNARPHKVDGRVVEPKRAVSRED 94
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 220 bits (561), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 97/180 (53%), Positives = 134/180 (74%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
KEPE LRKLFIGGL + T+ E+L+SHFE WG + D VVM+DP TK+SRGFGF+TY++
Sbjct: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEK 67
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQ 122
VD A ARPH +D +VVEPKRAV R + RP A TVKK+FVG +++D E L++YF Q
Sbjct: 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
Query: 123 FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMA 182
+G++ + ++T++ +GKKRGF FV ++D++ VDK ++ H V G +V+KALSK+EMA
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYD 152
P+ ++KLF+G L + T+E L+ +F Q+G +T ++ + T + RGFGFV Y +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 153 PVDKACLKGTHLVKGKKVDVKKALSKEEMAK 183
VD A H V G+ V+ K+A+S+E+ +
Sbjct: 67 KVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 215 bits (547), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 100/193 (51%), Positives = 136/193 (70%), Gaps = 4/193 (2%)
Query: 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMV 63
EPE LRKLFIGGL + T+ E+L+ HFE WG + D VVM+DP +K+SRGFGF+TY S V
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEV 68
Query: 64 DDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQF 123
D A ARPH +D +VVEPKRAV R + +RP A TVKK+FVG +++D E+ L+EYF Q+
Sbjct: 69 DAAMTARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQY 128
Query: 124 GEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMAK 183
G++ + ++T++ +GKKRGF FV + D+D VDK ++ H V V+KALSK+EMA
Sbjct: 129 GKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKALSKQEMAS 188
Query: 184 L----KTRGGFGG 192
+ + RGG G
Sbjct: 189 VSGSQRERGGSGN 201
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 55/91 (60%)
Query: 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYD 152
P ++KLF+G L + T+E L+E+F Q+G +T ++ + + + RGFGFV Y D
Sbjct: 7 PNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTD 66
Query: 153 PVDKACLKGTHLVKGKKVDVKKALSKEEMAK 183
VD A H V G+ V+ K+A+S+E+ ++
Sbjct: 67 EVDAAMTARPHKVDGRVVEPKRAVSREDSSR 97
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2
SV=1
Length = 471
Score = 214 bits (546), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 108/189 (57%), Positives = 130/189 (68%)
Query: 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMV 63
E EHLRKLFIGGL T+ E LK + WG VVDVVVM+D TK+SRGFGFITY+ + MV
Sbjct: 27 ELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMV 86
Query: 64 DDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQF 123
D AQ RPH ID K VE KRA+PR E E +VKKLFVG L+D+ EE L+EYF QF
Sbjct: 87 DRAQENRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQF 146
Query: 124 GEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMAK 183
G V SV L+T+K TGK+RGF FVE++DYD VDKA LK H +K VDVKK++ + +
Sbjct: 147 GNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKE 206
Query: 184 LKTRGGFGG 192
+ GG
Sbjct: 207 KQQPGGLAN 215
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 211 bits (538), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 96/190 (50%), Positives = 136/190 (71%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
KEPE LRKLFIGGL + T+ ++L+ HFE WG + D VVM+DPQTK+SRGFGF+TYS
Sbjct: 21 KEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEE 80
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQ 122
VD + +ARPH +D +VVEPKRAV R + RP A TVKK+FVG +++D E L++YF
Sbjct: 81 VDASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEG 140
Query: 123 FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMA 182
+G++ ++ ++ ++++GKKRGF FV ++D+D VDK ++ H + +VKKALSK+EM
Sbjct: 141 YGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLHNCEVKKALSKQEMQ 200
Query: 183 KLKTRGGFGG 192
+ G GG
Sbjct: 201 TASAQRGRGG 210
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 60/93 (64%)
Query: 91 NRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYND 150
+ P+ ++KLF+G L + T++ L+E+F Q+G++T ++ + +T + RGFGFV Y+
Sbjct: 18 HEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSC 77
Query: 151 YDPVDKACLKGTHLVKGKKVDVKKALSKEEMAK 183
+ VD + H V G+ V+ K+A+S+E+ A+
Sbjct: 78 VEEVDASMSARPHKVDGRVVEPKRAVSREDSAR 110
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 211 bits (538), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 94/179 (52%), Positives = 134/179 (74%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
KEPE LRKLFIGGL + T+ ++L+ HFE WG + D VVM+DPQTK+SRGFGF+TYS
Sbjct: 29 KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQ 122
VD A ARPH +D +VVEPKRAV R + +P A TVKK+FVG +++D E +L++YF +
Sbjct: 89 VDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEK 148
Query: 123 FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEM 181
+G++ ++ ++ ++++GKKRGF FV ++D+D VDK ++ H + G +VKKALSK+EM
Sbjct: 149 YGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEM 207
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 57/91 (62%)
Query: 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYD 152
P+ ++KLF+G L + T++ L+E+F ++G +T ++ + +T + RGFGFV Y+ +
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
Query: 153 PVDKACLKGTHLVKGKKVDVKKALSKEEMAK 183
VD A H V G+ V+ K+A+S+E+ K
Sbjct: 88 EVDAAMCARPHKVDGRVVEPKRAVSREDSVK 118
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 211 bits (538), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 94/179 (52%), Positives = 134/179 (74%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
KEPE LRKLFIGGL + T+ ++L+ HFE WG + D VVM+DPQTK+SRGFGF+TYS
Sbjct: 29 KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQ 122
VD A ARPH +D +VVEPKRAV R + +P A TVKK+FVG +++D E +L++YF +
Sbjct: 89 VDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEK 148
Query: 123 FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEM 181
+G++ ++ ++ ++++GKKRGF FV ++D+D VDK ++ H + G +VKKALSK+EM
Sbjct: 149 YGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEM 207
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 57/91 (62%)
Query: 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYD 152
P+ ++KLF+G L + T++ L+E+F ++G +T ++ + +T + RGFGFV Y+ +
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
Query: 153 PVDKACLKGTHLVKGKKVDVKKALSKEEMAK 183
VD A H V G+ V+ K+A+S+E+ K
Sbjct: 88 EVDAAMCARPHKVDGRVVEPKRAVSREDSVK 118
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 211 bits (538), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 94/179 (52%), Positives = 134/179 (74%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
KEPE LRKLFIGGL + T+ ++L+ HFE WG + D VVM+DPQTK+SRGFGF+TYS
Sbjct: 29 KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQ 122
VD A ARPH +D +VVEPKRAV R + +P A TVKK+FVG +++D E +L++YF +
Sbjct: 89 VDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEK 148
Query: 123 FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEM 181
+G++ ++ ++ ++++GKKRGF FV ++D+D VDK ++ H + G +VKKALSK+EM
Sbjct: 149 YGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEM 207
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 57/91 (62%)
Query: 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYD 152
P+ ++KLF+G L + T++ L+E+F ++G +T ++ + +T + RGFGFV Y+ +
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
Query: 153 PVDKACLKGTHLVKGKKVDVKKALSKEEMAK 183
VD A H V G+ V+ K+A+S+E+ K
Sbjct: 88 EVDAAMCARPHKVDGRVVEPKRAVSREDSVK 118
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 198 bits (504), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 91/192 (47%), Positives = 134/192 (69%), Gaps = 6/192 (3%)
Query: 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMV 63
EPE+LRK+F+GGL T+ + ++ + +G++ D++VM+DP TK+SRGFGF+T+S V
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV 77
Query: 64 DDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQF 123
D A RPH ID K V+PKRAVPR + NR E+ + K+L+V +R+D TE+ L EYF ++
Sbjct: 78 DAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKY 137
Query: 124 GEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMAK 183
G VT ++ +K T K RGFGFV ++D+D VD+ L+ +H+V G + DV+K LSK+EM+K
Sbjct: 138 GTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSK 197
Query: 184 LK------TRGG 189
+ TRGG
Sbjct: 198 AQMNRDRETRGG 209
>sp|Q13151|ROA0_HUMAN Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens
GN=HNRNPA0 PE=1 SV=1
Length = 305
Score = 184 bits (467), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 122/178 (68%)
Query: 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMV 63
E L KLFIGGL+ +TS L+ HFEA+G + D VV+ +PQTK+SR FGF+TYS+
Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
Query: 64 DDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQF 123
D A AA PH +D VE KRAV R + RP A A VKKLFVG L+ D+ E DL E+F QF
Sbjct: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
Query: 124 GEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEM 181
G V ++ +K++GKKRGFGFV + ++D DKA + H ++G +V+VKKA+ KE++
Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDI 179
>sp|Q9CX86|ROA0_MOUSE Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus
GN=Hnrnpa0 PE=1 SV=1
Length = 305
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 121/178 (67%)
Query: 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMV 63
E L KLFIGGL+ +TS L+ HFEA+G + D VV+ +PQTK+SR FGF+TYS+
Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
Query: 64 DDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQF 123
D A AA PH +D VE KRAV R + RP A A VKKLFVG L+ D+ E DL E+F QF
Sbjct: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
Query: 124 GEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEM 181
G V ++ +K++GKKRGFGFV + +D DKA + H ++G +V+VKKA+ KE++
Sbjct: 122 GAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKEDI 179
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 127/226 (56%), Gaps = 23/226 (10%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
KLF+GGLD+ T+ ETL+S+F +G+VVD V+MKD T +SRGFGF+ + + V A+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 70 RPHTIDSKVVEPKRAVPR---TEINRPEAG---------ATVKKLFVGSLRDDITEEDLK 117
RPHT+D + ++PK PR E RP+ G + K+FVG + + E +L+
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
Query: 118 EYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALS 177
EYF +FG VT V ++ + E + RGFGF+ + D VD+A H + GKKV+VK+A
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 178 KEEMAKLKTRGGFGGNQGGGDPWGN----NGGGGWGGGGPGPWDQG 219
++ ++ Q G WG+ N GW G P W QG
Sbjct: 191 RDSKSQ-------APGQPGASQWGSRVVPNAANGWAGQPPPTWQQG 229
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 160 bits (406), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 128/222 (57%), Gaps = 15/222 (6%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
KLF+GGLD+ T+ ETL+S+F +G+VVD V+MKD T +SRGFGF+ + + V A+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 70 RPHTIDSKVVEPKRAVPR---TEINRPEAG---------ATVKKLFVGSLRDDITEEDLK 117
RPHT+D + ++PK PR E RP+ G + K+FVG + + E +L+
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELR 130
Query: 118 EYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALS 177
EYF +FG VT V ++ + E + RGFGF+ + D VD+A H + GKKV+VK+A
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 178 KEEMAKLKTRGGFGGNQGGGDPWGNNGGGGWGGGGPGPWDQG 219
++ +K + G G +Q G + GW G P W QG
Sbjct: 191 RD--SKNQAPGQPGASQWGSR-VAPSAANGWAGQPPPTWQQG 229
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 127/220 (57%), Gaps = 16/220 (7%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
KLF+GGLD+ T+ ETL+S+F +G+VVD V+MKD T +SRGFGF+ + + V A+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 70 RPHTIDSKVVEPKRAVPR---TEINRPEAGATVK----------KLFVGSLRDDITEEDL 116
RPHT+D + ++PK PR E +RP G K K+FVG + + E +L
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETEL 130
Query: 117 KEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKAL 176
KEYF +FG VT V ++ + E + RGFGF+ + D VD+A H + GKKV+VK+A
Sbjct: 131 KEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 190
Query: 177 SKEEMAKLKTRGGFGGNQGGGDPWGNNGGGGWGGGGPGPW 216
++ +K +T G G NQ G + GW G P W
Sbjct: 191 PRD--SKSQTPGPPGSNQWGSRAM-QSTANGWTGQPPQTW 227
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 3 KEP--EHLR--KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYS 58
KEP E+ R K+F+GG+ + LK +F +G V +VV++ D + ++ RGFGFIT+
Sbjct: 104 KEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFE 163
Query: 59 SAHMVDDAQAARPHTIDSKVVEPKRAVPR 87
VD A H I K VE KRA PR
Sbjct: 164 DEQSVDQAVNMHFHDIMGKKVEVKRAEPR 192
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVD 155
G + KLFVG L T+E L+ YF Q+GEV ++ +K T + RGFGFV++ D + V
Sbjct: 6 GDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVG 65
Query: 156 KACLKGTHLVKGKKVDVKKALSK 178
H + G+ +D K +
Sbjct: 66 TVLASRPHTLDGRNIDPKPCTPR 88
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 111/179 (62%), Gaps = 2/179 (1%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+FIGGL ++TS ++L+ +F +G++ + +VM+DP TK+SRGFGF+T++ VD
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 70 RPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSV 129
H +DSK ++PK A PR +P+ KK+FVG L + ED+K+YF QFG+V
Sbjct: 82 PHHELDSKTIDPKVAFPRRA--QPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 139
Query: 130 ALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMAKLKTRG 188
L+ +K T + RGFGFV + + D V+K C H + K V+ KKA KE M TRG
Sbjct: 140 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRG 198
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68
+K+F+GGL T E +K +FE +G V D ++M D T + RGFGF+T+ + +V+
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 69 ARPHTIDSKVVEPKRAVPRTEINRP 93
H I++K+VE K+A P+ + P
Sbjct: 170 IHFHEINNKMVECKKAQPKEVMFPP 194
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 111/179 (62%), Gaps = 2/179 (1%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+FIGGL ++TS ++L+ +F +G++ + +VM+DP TK+SRGFGF+T++ VD
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 70 RPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSV 129
H +DSK ++PK A PR +P+ KK+FVG L + ED+K+YF QFG+V
Sbjct: 82 PHHELDSKTIDPKVAFPRRA--QPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 139
Query: 130 ALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMAKLKTRG 188
L+ +K T + RGFGFV + + D V+K C H + K V+ KKA KE M TRG
Sbjct: 140 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRG 198
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68
+K+F+GGL T E +K +FE +G V D ++M D T + RGFGF+T+ + +V+
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 69 ARPHTIDSKVVEPKRAVPRTEINRP 93
H I++K+VE K+A P+ + P
Sbjct: 170 IHFHEINNKMVECKKAQPKEVMFPP 194
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 110/183 (60%), Gaps = 5/183 (2%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+FIGGL ++TS E+L+ +F +GD+ + +VMKDP T++SRGFGF+T+S + VD
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 70 RPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSV 129
H +D K V+PK A PR P+ KK+FVG L T ED+K YF QFG +
Sbjct: 90 GTHELDGKKVDPKVAFPRRA--HPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDA 147
Query: 130 ALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEM--AKL-KT 186
L+ +K+T + RGFGFV + D VDK C H + K V+ KKA KE M A L KT
Sbjct: 148 MLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVMLPANLAKT 207
Query: 187 RGG 189
R
Sbjct: 208 RAA 210
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 109/178 (61%), Gaps = 2/178 (1%)
Query: 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVD 64
P K+FIGGL ++T+ E L+ +F +G+V + +VM+DP TK+SRGFGF+T+ VD
Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 65 DAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFG 124
A H +DSK ++PK A PR +P+ KK+FVG L + T ED+K+YF QFG
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRA--QPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFG 133
Query: 125 EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMA 182
+V L+ +K T + RGFGFV + D V+K C H + K V+ KKA KE M+
Sbjct: 134 KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMS 191
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%)
Query: 86 PRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGF 145
P+ + P++ K+F+G L T+E L+EYFGQFGEV ++ + T + RGFGF
Sbjct: 6 PQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGF 65
Query: 146 VEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMAKLKTR 187
V + D VDK + H + K +D K A + K+ TR
Sbjct: 66 VTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 107
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68
+K+F+GGL T+ E +K +FE +G V D ++M D T + RGFGF+T+ S +V+
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 69 ARPHTIDSKVVEPKRAVPRTEINRPEAGA 97
H I++K+VE K+A P+ E+ P A
Sbjct: 169 IHFHEINNKMVECKKAQPK-EVMSPTGSA 196
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 108/178 (60%), Gaps = 2/178 (1%)
Query: 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVD 64
P K+FIGGL ++T+ E L+ +F +G+V + +VM+DP TK+SRGFGF+T+ VD
Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 65 DAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFG 124
A H +DSK ++PK A PR +P+ KK+FVG L + T ED+K YF QFG
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRA--QPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFG 133
Query: 125 EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMA 182
+V L+ +K T + RGFGFV + D V+K C H + K V+ KKA KE M+
Sbjct: 134 KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMS 191
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%)
Query: 86 PRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGF 145
P+ + P++ K+F+G L T+E L+EYFGQFGEV ++ + T + RGFGF
Sbjct: 6 PQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGF 65
Query: 146 VEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMAKLKTR 187
V + D VDK + H + K +D K A + K+ TR
Sbjct: 66 VTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 107
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68
+K+F+GGL T+ E +K +FE +G V D ++M D T + RGFGF+T+ S +V+
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 69 ARPHTIDSKVVEPKRAVPRTEINRPEAGA 97
H I++K+VE K+A P+ E+ P A
Sbjct: 169 IHFHEINNKMVECKKAQPK-EVMSPTGSA 196
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 108/178 (60%), Gaps = 2/178 (1%)
Query: 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVD 64
P K+FIGGL ++T+ E L+ +F +G+V + +VM+DP TK+SRGFGF+T+ VD
Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 65 DAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFG 124
A H +DSK ++PK A PR +P+ KK+FVG L + T ED+K YF QFG
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRA--QPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFG 133
Query: 125 EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMA 182
+V L+ +K T + RGFGFV + D V+K C H + K V+ KKA KE M+
Sbjct: 134 KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMS 191
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%)
Query: 86 PRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGF 145
P+ + P++ K+F+G L T+E L+EYFGQFGEV ++ + T + RGFGF
Sbjct: 6 PQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGF 65
Query: 146 VEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMAKLKTR 187
V + D VDK + H + K +D K A + K+ TR
Sbjct: 66 VTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 107
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68
+K+F+GGL T+ E +K +FE +G V D ++M D T + RGFGF+T+ S +V+
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 69 ARPHTIDSKVVEPKRAVPRTEINRPEAGA 97
H I++K+VE K+A P+ E+ P A
Sbjct: 169 IHFHEINNKMVECKKAQPK-EVMSPTGSA 196
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 148 bits (373), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 120/205 (58%), Gaps = 8/205 (3%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+FIGGL++ T+ ++L+ +FE +G+V+D VM+D T +SRGFGF+T+ + V++ +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV-MS 222
Query: 70 RPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSV 129
+ H +D K+++PKRA+PR E + K+FVG + D TEE+ + +F QFG V
Sbjct: 223 KEHHLDGKIIDPKRAIPREEQEK------TAKMFVGGVPGDCTEEEFRNFFNQFGRVLDA 276
Query: 130 ALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMAKLKTRGG 189
L+ +K+TG+ RGFGFV Y + V+ + + GK V+VK+A K + R
Sbjct: 277 TLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHDRHQ 336
Query: 190 FGGNQGGGDPWGNNGGGGWGGGGPG 214
G + G +P+ +GG P
Sbjct: 337 HGYH-GNANPYYAQNMNMYGGMTPA 360
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
+E E K+F+GG+ + E ++ F +G V+D +M D T + RGFGF+TY +
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESA 300
Query: 63 VDDAQAARPH-TIDSKVVEPKRAVPRTEI 90
V +A ++P+ TI K VE KRA P+ +
Sbjct: 301 V-EATMSQPYITIHGKPVEVKRATPKASL 328
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 136/257 (52%), Gaps = 8/257 (3%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+FIGGL + T+ + LK +F +GDVVD + DP T +SRGFGF+ + + VD
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 70 RPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSV 129
+ H ++ KV++PKRA + VKK+FVG L D EE ++EYFG FGEV S+
Sbjct: 156 KEHKLNGKVIDPKRAKAM------KTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 209
Query: 130 ALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMAKLKTRGG 189
L + +T K+RGF F+ + + +PV K K H V K ++K A+SKE+ + + G
Sbjct: 210 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS 269
Query: 190 FGGNQGGGDPWGNNGGGGWGGGGPGPWDQGGSSWGGNSGGGWGGNSGGGWGGNSGGGWG- 248
GG G G W G W+QG S+G NS G G G NS G+G
Sbjct: 270 RGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGSYGYNSQGYGGYGGYDYTGYNSYYGYGD 329
Query: 249 -GNSGGGWGGNSAWGGQ 264
N G+G S GG
Sbjct: 330 YSNQQSGYGKVSRRGGH 346
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 2 TKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAH 61
TKEP ++K+F+GGL T E ++ +F +G+V + + D +T K RGF FIT+
Sbjct: 175 TKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 232
Query: 62 MVDDAQAARPHTIDSKVVEPKRAVPR 87
V + H + E K A+ +
Sbjct: 233 PVKKIMEKKYHNVGLSKCEIKVAMSK 258
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 139 bits (349), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 109/170 (64%), Gaps = 2/170 (1%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
KLF+GGL + T+ E L +F +GD++D VVMK+ ++ +SRGFGF+T++ V+
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 70 RPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSV 129
PHT+D + ++PK PRT + +P+ G K+F+G L ++TE DL+ +F ++G+VT V
Sbjct: 68 GPHTLDGRTIDPKPCNPRT-LQKPKKGGGY-KVFLGGLPSNVTETDLRTFFNRYGKVTEV 125
Query: 130 ALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKE 179
++ ++E K RGFGF+ + + V+ + + GK+V++KKA ++
Sbjct: 126 VIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRD 175
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 103/170 (60%), Gaps = 7/170 (4%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+F+GGL + TS + LK +F +G+VVD + DP T +SRGFGFI + + V+
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 70 RPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSV 129
+ H +D +V++PK+A+ + VKK+FVG L + TEE ++EYFGQFGE+ ++
Sbjct: 136 KEHRLDGRVIDPKKAMAMKK-------DPVKKIFVGGLNPEATEEKIREYFGQFGEIEAI 188
Query: 130 ALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKE 179
L + + K+RGF F+ + + DPV K K H V G K ++K A KE
Sbjct: 189 ELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKE 238
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 116/210 (55%), Gaps = 6/210 (2%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+FIGGL + T+ + LK +F +G+VVD + DP T +SRGFGF+ + + VD
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 70 RPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSV 129
+ H ++ KV++PKRA + VKK+FVG L D EE ++EYFG FGEV S+
Sbjct: 158 KEHKLNGKVIDPKRAKAM------KTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
Query: 130 ALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMAKLKTRGG 189
L + +T K+RGF F+ + + +PV K K H V K ++K A+SKE+ + + G
Sbjct: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS 271
Query: 190 FGGNQGGGDPWGNNGGGGWGGGGPGPWDQG 219
GG G G W G W+QG
Sbjct: 272 RGGFAGRARGRGGGPSQNWNQGYSNYWNQG 301
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 2 TKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAH 61
TKEP ++K+F+GGL T E ++ +F +G+V + + D +T K RGF FIT+
Sbjct: 177 TKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234
Query: 62 MVDDAQAARPHTIDSKVVEPKRAVPR 87
V + H + E K A+ +
Sbjct: 235 PVKKIMEKKYHNVGLSKCEIKVAMSK 260
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 116/210 (55%), Gaps = 6/210 (2%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+FIGGL + T+ + LK +F +G+VVD + DP T +SRGFGF+ + + VD
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 70 RPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSV 129
+ H ++ KV++PKRA + VKK+FVG L D EE ++EYFG FGEV S+
Sbjct: 158 KEHKLNGKVIDPKRAKAM------KTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
Query: 130 ALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMAKLKTRGG 189
L + +T K+RGF F+ + + +PV K K H V K ++K A+SKE+ + + G
Sbjct: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS 271
Query: 190 FGGNQGGGDPWGNNGGGGWGGGGPGPWDQG 219
GG G G W G W+QG
Sbjct: 272 RGGFAGRARGRGGGPSQNWNQGYSNYWNQG 301
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 2 TKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAH 61
TKEP ++K+F+GGL T E ++ +F +G+V + + D +T K RGF FIT+
Sbjct: 177 TKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234
Query: 62 MVDDAQAARPHTIDSKVVEPKRAVPR 87
V + H + E K A+ +
Sbjct: 235 PVKKIMEKKYHNVGLSKCEIKVAMSK 260
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 134 bits (338), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 106/166 (63%), Gaps = 7/166 (4%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+FIGGL++ T+ + L+ +F +G V D+ +MKDP T +SRGFGF+++ VD+
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 70 RPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSV 129
+ H +D KV++PKRA+PR E ++ K+FVG + D+ ++ +E+F Q+G +
Sbjct: 220 Q-HILDGKVIDPKRAIPRDEQDK------TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDA 272
Query: 130 ALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKA 175
L+ +K+TG+ RGFGFV Y+ D VD+ C K +K+++K+A
Sbjct: 273 QLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRA 318
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+F+GG+ + + F WG ++D +M D T +SRGFGF+TY SA VD
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303
Query: 70 RPHTIDSKVVEPKRAVPR 87
+ + +E KRA PR
Sbjct: 304 KFIDFKDRKIEIKRAEPR 321
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 109/184 (59%), Gaps = 15/184 (8%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
KLF+GG+ + T + L+ HF +G+V +VM+D T + RGFGF+ +S ++D
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 70 RPHTIDSKVVEPKRAVPRTE---------INRP-----EAGATVKKLFVGSLRDDITEED 115
+ H+ID++ V+ KRA+ R E +N +A KK+FVG L +T+E+
Sbjct: 67 K-HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE 125
Query: 116 LKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKA 175
++YF +G VT VA++ ++ T + RGFGFV ++ D VD K H + GK+V+VK+A
Sbjct: 126 FRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRA 185
Query: 176 LSKE 179
L K+
Sbjct: 186 LPKD 189
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68
+K+F+GGL + E + +FE +G V DV +M D T + RGFGF+++ S VD
Sbjct: 110 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH 169
Query: 69 ARPHTIDSKVVEPKRAVPR 87
H + K VE KRA+P+
Sbjct: 170 KTFHDLSGKQVEVKRALPK 188
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 103/171 (60%), Gaps = 8/171 (4%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+F+GGL + TS + LK +F +G+VVD + DP T +SRGFGFI + A V+
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 70 RPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLR-DDITEEDLKEYFGQFGEVTS 128
+ H +D +V++PK+A+ + VKK+FVG L + TEE ++EYFG+FGE+ +
Sbjct: 130 KEHRLDGRVIDPKKAMAMKK-------DPVKKIFVGGLNPESPTEEKIREYFGEFGEIEA 182
Query: 129 VALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKE 179
+ L + + K+RGF F+ + + +PV K K H V G K ++K A KE
Sbjct: 183 IELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKE 233
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 6/170 (3%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+FIGGL + TS + L + +G+VVD + DP T +SRGFGF+ + A VD
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 70 RPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSV 129
+ H +D K+++PKRA P KK+FVG L D +EE +KEYFG FGE+ ++
Sbjct: 112 KEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 165
Query: 130 ALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKE 179
L + +T ++RGF F+ Y D +PV K H + K ++K A KE
Sbjct: 166 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 215
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
KEP +K+F+GGL TS E +K +F A+G++ ++ + D +T + RGF FITY+
Sbjct: 132 KEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEP 189
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTEINR 92
V +R H I S E K A P+ E+ R
Sbjct: 190 VKKLLESRYHQIGSGKCEIKVAQPK-EVYR 218
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 6/170 (3%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+FIGGL + TS + L + +G+VVD + DP T +SRGFGF+ + A VD
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 70 RPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSV 129
+ H +D K+++PKRA P KK+FVG L D +EE +KEYFG FGE+ ++
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 262
Query: 130 ALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKE 179
L + +T ++RGF F+ Y D +PV K H + K ++K A KE
Sbjct: 263 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
KEP +K+F+GGL TS E +K +F A+G++ ++ + D +T + RGF FITY+
Sbjct: 229 KEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEP 286
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTEINR 92
V +R H I S E K A P+ E+ R
Sbjct: 287 VKKLLESRYHQIGSGKCEIKVAQPK-EVYR 315
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 97/170 (57%), Gaps = 6/170 (3%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+FIGGL + TS + L + +G+VVD + DP T +SRGFGF+ + A V+
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 70 RPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSV 129
+ H +D K+++PKRA P KK+FVG L D +EE +KEYFG FGE+ ++
Sbjct: 91 KEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 144
Query: 130 ALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKE 179
L + +T ++RGF F+ Y D +PV K H + K ++K A KE
Sbjct: 145 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 194
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
KEP +K+F+GGL TS E +K +F A+G++ ++ + D +T + RGF FITY+
Sbjct: 111 KEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEP 168
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTEINR 92
V +R H I S E K A P+ E+ R
Sbjct: 169 VKKLLESRYHQIGSGKCEIKVAQPK-EVYR 197
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 128 bits (321), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 6/170 (3%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+FIGGL + TS + L + +G+VVD + DP T +SRGFGF+ + A VD
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 70 RPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSV 129
+ H +D K+++PKRA P KK+FVG L D +EE +KEYFG FGE+ ++
Sbjct: 90 KEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 143
Query: 130 ALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKE 179
L + +T ++RGF F+ Y D +PV K H + K ++K A KE
Sbjct: 144 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 193
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
KEP +K+F+GGL TS E +K +F A+G++ ++ + D +T + RGF FITY+
Sbjct: 110 KEPP--KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEP 167
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTEINR 92
V +R H I S E K A P+ E+ R
Sbjct: 168 VKKLLESRYHQIGSGKCEIKVAQPK-EVYR 196
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 140/275 (50%), Gaps = 16/275 (5%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+FIGGL + TS + L + +G+VVD + DP T +SRGFGF+ + A VD
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 70 RPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSV 129
+ H +D K+++PKRA P KK+FVG L + TEE +K+YFG FGE+ ++
Sbjct: 87 KEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPETTEEQIKQYFGGFGEIENI 140
Query: 130 ALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKE---EMAKLKT 186
L + +T ++RGF FV Y +PV K H + K ++K A KE + + +
Sbjct: 141 ELPMDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKVAQPKEVYRQQQQKQQ 200
Query: 187 RGGFGGNQGGGDPWGNNGGGGWGGGGPGPWDQGGSSWGGN-SGGGWGGN---SGGGWGGN 242
+GG G G G G G GW G +DQ S+G N S G N SG + G
Sbjct: 201 KGGRGAATGRGGARGRGRGQGWNQGYSNYYDQNYGSYGNNGSYADQGYNNSYSGYDYSGY 260
Query: 243 SGGGWGGNSG--GGWGGNSAWG-GQGGGGFGGGYQ 274
+ G +G N G G S +G +GGG YQ
Sbjct: 261 NYGSYGYNQGYTDYSGQQSTYGKARGGGNHQNNYQ 295
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 100/172 (58%), Gaps = 11/172 (6%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68
RKLF+GGL + T+ + L+ HF +G++ + V DPQT +SRGF FI +++ +D A
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
Query: 69 ARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTS 128
A H I+SK V+PK+A R K+FVG L +I++E++K YFGQFG +
Sbjct: 116 ADEHIINSKKVDPKKAKARH-----------GKIFVGGLTTEISDEEIKTYFGQFGNIVE 164
Query: 129 VALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEE 180
V + +K+ +++GF F+ ++ V + GK+VDVK+A K E
Sbjct: 165 VEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPE 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.140 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,364,222
Number of Sequences: 539616
Number of extensions: 8892030
Number of successful extensions: 226891
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2430
Number of HSP's successfully gapped in prelim test: 1092
Number of HSP's that attempted gapping in prelim test: 51172
Number of HSP's gapped (non-prelim): 55326
length of query: 304
length of database: 191,569,459
effective HSP length: 117
effective length of query: 187
effective length of database: 128,434,387
effective search space: 24017230369
effective search space used: 24017230369
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)