Query psy16454
Match_columns 304
No_of_seqs 354 out of 2670
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 21:44:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 3.5E-37 7.7E-42 274.7 25.6 170 4-179 103-276 (346)
2 TIGR01645 half-pint poly-U bin 100.0 1.1E-31 2.4E-36 251.5 20.0 175 6-180 105-286 (612)
3 TIGR01622 SF-CC1 splicing fact 100.0 4.5E-31 9.8E-36 247.5 21.3 174 4-177 85-265 (457)
4 TIGR01648 hnRNP-R-Q heterogene 100.0 2.7E-30 5.9E-35 241.8 26.2 167 5-180 55-309 (578)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2E-30 4.4E-35 235.2 20.6 167 7-179 2-172 (352)
6 KOG0117|consensus 100.0 8.3E-29 1.8E-33 216.4 26.2 172 4-184 79-337 (506)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.4E-29 3.1E-34 229.7 21.5 174 6-179 87-350 (352)
8 KOG4205|consensus 100.0 2.3E-30 4.9E-35 224.5 12.8 183 4-186 2-184 (311)
9 KOG0148|consensus 100.0 2E-29 4.4E-34 207.3 16.7 167 9-181 63-241 (321)
10 TIGR01628 PABP-1234 polyadenyl 100.0 1.6E-28 3.4E-33 235.6 19.4 162 10-176 2-165 (562)
11 KOG0144|consensus 100.0 4.9E-29 1.1E-33 216.9 11.9 171 5-181 31-209 (510)
12 TIGR01628 PABP-1234 polyadenyl 100.0 8.2E-28 1.8E-32 230.7 20.9 174 6-181 176-367 (562)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 8.1E-27 1.8E-31 221.6 20.2 169 4-178 171-375 (509)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.7E-26 3.7E-31 216.9 20.2 162 7-178 1-174 (481)
15 KOG0145|consensus 99.9 3.6E-27 7.9E-32 193.0 13.3 170 5-180 38-211 (360)
16 KOG0127|consensus 99.9 2.5E-26 5.5E-31 205.2 16.3 172 9-181 6-199 (678)
17 KOG0127|consensus 99.9 4.3E-26 9.2E-31 203.8 17.7 175 8-183 117-383 (678)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.6E-25 3.5E-30 210.2 20.2 166 6-178 273-480 (481)
19 KOG0131|consensus 99.9 2.8E-26 6.1E-31 178.6 11.1 170 5-179 6-178 (203)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.5E-25 7.6E-30 210.4 21.0 173 6-178 293-502 (509)
21 KOG0109|consensus 99.9 1E-25 2.2E-30 187.3 10.3 148 9-180 3-152 (346)
22 KOG0145|consensus 99.9 3.6E-24 7.8E-29 175.5 15.4 173 6-178 125-358 (360)
23 KOG0124|consensus 99.9 2.2E-24 4.8E-29 184.4 10.3 174 7-180 112-292 (544)
24 TIGR01622 SF-CC1 splicing fact 99.9 1.7E-22 3.8E-27 189.5 21.0 168 8-179 186-449 (457)
25 KOG0123|consensus 99.9 1.1E-22 2.3E-27 182.8 17.1 154 9-182 2-157 (369)
26 KOG4211|consensus 99.9 3.3E-21 7.1E-26 171.2 25.2 177 1-180 3-184 (510)
27 KOG0148|consensus 99.9 4.6E-23 1E-27 169.9 11.0 141 4-179 2-143 (321)
28 KOG0110|consensus 99.9 2.7E-22 5.9E-27 184.8 12.0 174 8-181 515-696 (725)
29 KOG0147|consensus 99.9 1E-22 2.2E-27 183.0 7.8 178 3-180 174-360 (549)
30 PLN03134 glycine-rich RNA-bind 99.9 2.6E-20 5.5E-25 146.5 14.5 85 96-180 31-116 (144)
31 KOG0146|consensus 99.8 5.1E-21 1.1E-25 157.6 9.5 174 6-180 17-367 (371)
32 KOG0123|consensus 99.8 3.2E-20 6.9E-25 166.9 15.3 169 7-179 75-247 (369)
33 KOG0105|consensus 99.8 1.2E-19 2.6E-24 141.9 15.1 151 5-165 3-175 (241)
34 KOG0144|consensus 99.8 2.2E-20 4.8E-25 163.2 10.8 171 8-179 124-505 (510)
35 TIGR01645 half-pint poly-U bin 99.8 4.3E-18 9.3E-23 160.3 20.0 80 6-85 202-282 (612)
36 PLN03134 glycine-rich RNA-bind 99.8 9E-18 1.9E-22 132.0 10.8 84 5-88 31-115 (144)
37 KOG4212|consensus 99.7 5.9E-17 1.3E-21 142.0 16.1 167 6-174 42-290 (608)
38 KOG4206|consensus 99.7 1.8E-16 4E-21 128.7 16.0 164 4-175 5-219 (221)
39 KOG4211|consensus 99.7 9.3E-16 2E-20 136.8 19.4 168 6-175 101-355 (510)
40 KOG0149|consensus 99.7 3.2E-17 6.9E-22 133.4 7.6 82 96-177 9-90 (247)
41 KOG0113|consensus 99.7 9.3E-17 2E-21 134.6 9.1 101 92-192 94-197 (335)
42 KOG0106|consensus 99.7 6.4E-17 1.4E-21 132.6 7.3 153 9-177 2-170 (216)
43 KOG0110|consensus 99.7 3.8E-16 8.2E-21 144.6 12.9 166 5-176 382-596 (725)
44 TIGR01659 sex-lethal sex-letha 99.7 5.9E-16 1.3E-20 138.6 11.2 84 94-177 102-186 (346)
45 KOG0149|consensus 99.7 2.6E-16 5.5E-21 128.1 7.9 80 6-85 10-89 (247)
46 KOG0122|consensus 99.7 1.6E-15 3.4E-20 124.0 11.8 83 96-178 186-269 (270)
47 KOG1457|consensus 99.6 5.1E-15 1.1E-19 119.4 12.5 154 3-160 29-267 (284)
48 KOG0121|consensus 99.6 1.5E-15 3.4E-20 112.0 8.1 84 97-180 34-118 (153)
49 KOG1548|consensus 99.6 2.6E-14 5.6E-19 122.3 16.7 165 5-174 131-348 (382)
50 PF00076 RRM_1: RNA recognitio 99.6 3.8E-15 8.1E-20 102.5 9.2 69 102-171 1-70 (70)
51 KOG4207|consensus 99.6 1.6E-15 3.4E-20 121.0 7.7 85 94-178 8-93 (256)
52 COG0724 RNA-binding proteins ( 99.6 1.1E-14 2.4E-19 126.8 13.6 130 8-137 115-263 (306)
53 KOG0147|consensus 99.6 5.7E-15 1.2E-19 133.4 11.1 166 8-178 278-528 (549)
54 PF00076 RRM_1: RNA recognitio 99.6 6.8E-15 1.5E-19 101.2 7.9 68 11-79 1-69 (70)
55 KOG0129|consensus 99.6 4.7E-14 1E-18 126.8 15.1 174 4-177 255-453 (520)
56 PLN03120 nucleic acid binding 99.6 1.1E-14 2.5E-19 122.5 10.4 76 99-177 4-79 (260)
57 TIGR01648 hnRNP-R-Q heterogene 99.6 8.7E-15 1.9E-19 137.9 10.5 111 7-125 232-367 (578)
58 KOG0122|consensus 99.6 9.6E-15 2.1E-19 119.5 9.1 82 6-87 187-269 (270)
59 PF14259 RRM_6: RNA recognitio 99.6 1.4E-14 3.1E-19 99.9 8.5 69 102-171 1-70 (70)
60 PF14259 RRM_6: RNA recognitio 99.6 1E-14 2.3E-19 100.5 7.6 68 11-79 1-69 (70)
61 PLN03120 nucleic acid binding 99.5 3.6E-14 7.8E-19 119.5 10.5 79 7-88 3-81 (260)
62 KOG0121|consensus 99.5 1.2E-14 2.5E-19 107.4 6.5 81 5-85 33-114 (153)
63 KOG0125|consensus 99.5 2.2E-14 4.7E-19 122.0 9.0 85 95-181 92-177 (376)
64 KOG0105|consensus 99.5 7.2E-14 1.6E-18 109.7 10.5 76 98-176 5-81 (241)
65 KOG0107|consensus 99.5 5.3E-14 1.2E-18 109.6 8.1 76 99-179 10-86 (195)
66 KOG0113|consensus 99.5 6.8E-14 1.5E-18 117.6 8.8 83 6-88 99-182 (335)
67 KOG1365|consensus 99.5 4.3E-14 9.3E-19 122.3 7.3 169 8-178 161-362 (508)
68 KOG0124|consensus 99.5 5.6E-13 1.2E-17 114.9 13.9 169 5-173 207-530 (544)
69 PLN03121 nucleic acid binding 99.5 1.9E-13 4.1E-18 113.3 10.2 76 98-176 4-79 (243)
70 KOG0107|consensus 99.5 1.1E-13 2.3E-18 107.9 7.1 78 6-88 8-86 (195)
71 KOG0120|consensus 99.5 6E-13 1.3E-17 121.8 12.5 175 3-177 284-491 (500)
72 KOG4212|consensus 99.5 2.2E-12 4.7E-17 113.7 15.4 72 98-174 535-607 (608)
73 PLN03121 nucleic acid binding 99.4 4.7E-13 1E-17 111.0 9.8 77 7-86 4-80 (243)
74 smart00362 RRM_2 RNA recogniti 99.4 8.3E-13 1.8E-17 90.5 9.1 71 101-173 1-72 (72)
75 KOG0130|consensus 99.4 2.4E-13 5.3E-18 101.3 6.1 88 93-180 66-154 (170)
76 smart00360 RRM RNA recognition 99.4 9E-13 2E-17 90.0 8.5 70 104-173 1-71 (71)
77 KOG1456|consensus 99.4 3.7E-12 8.1E-17 110.1 13.8 167 2-179 25-200 (494)
78 KOG4207|consensus 99.4 2.9E-13 6.2E-18 108.1 6.4 82 4-85 9-91 (256)
79 KOG1190|consensus 99.4 6.2E-12 1.4E-16 110.0 15.1 161 8-177 297-490 (492)
80 KOG0114|consensus 99.4 1E-12 2.2E-17 93.5 7.9 82 3-87 13-95 (124)
81 smart00362 RRM_2 RNA recogniti 99.4 1.9E-12 4.1E-17 88.7 9.0 70 10-81 1-71 (72)
82 KOG0125|consensus 99.4 7.2E-13 1.6E-17 112.8 8.2 83 5-89 93-176 (376)
83 PLN03213 repressor of silencin 99.4 1.3E-12 2.7E-17 116.8 10.0 78 97-178 8-88 (759)
84 KOG0114|consensus 99.4 3E-12 6.5E-17 91.2 9.9 84 96-182 15-99 (124)
85 KOG0111|consensus 99.4 2.8E-13 6E-18 109.2 4.3 84 97-180 8-92 (298)
86 KOG1190|consensus 99.4 1.8E-12 3.8E-17 113.4 9.2 159 6-174 26-222 (492)
87 PLN03213 repressor of silencin 99.4 7E-13 1.5E-17 118.4 6.8 79 5-87 7-88 (759)
88 KOG0126|consensus 99.4 7.2E-14 1.6E-18 109.4 0.2 80 96-175 32-112 (219)
89 COG0724 RNA-binding proteins ( 99.4 5.1E-12 1.1E-16 109.9 11.6 79 99-177 115-194 (306)
90 cd00590 RRM RRM (RNA recogniti 99.4 6.6E-12 1.4E-16 86.4 9.6 73 101-174 1-74 (74)
91 KOG0131|consensus 99.4 1E-12 2.2E-17 103.2 6.0 79 98-176 8-87 (203)
92 KOG0120|consensus 99.4 2.4E-12 5.2E-17 117.8 9.2 168 6-179 173-370 (500)
93 smart00360 RRM RNA recognition 99.4 4.9E-12 1.1E-16 86.3 8.5 69 13-81 1-70 (71)
94 KOG0117|consensus 99.4 7.8E-12 1.7E-16 110.6 11.7 79 97-175 81-161 (506)
95 KOG0415|consensus 99.3 1.9E-12 4.1E-17 111.2 6.7 85 96-180 236-321 (479)
96 KOG4210|consensus 99.3 2.6E-12 5.6E-17 111.8 7.0 174 7-180 87-266 (285)
97 KOG0116|consensus 99.3 1.2E-11 2.6E-16 112.0 11.2 79 100-178 289-367 (419)
98 KOG0126|consensus 99.3 1.6E-13 3.5E-18 107.5 -0.8 80 6-85 33-113 (219)
99 KOG4205|consensus 99.3 1.7E-12 3.6E-17 113.3 5.1 87 98-184 5-91 (311)
100 cd00590 RRM RRM (RNA recogniti 99.3 2.7E-11 5.9E-16 83.3 9.4 72 10-82 1-73 (74)
101 KOG0108|consensus 99.3 9.7E-12 2.1E-16 113.2 8.5 84 100-183 19-103 (435)
102 KOG0130|consensus 99.3 5.1E-12 1.1E-16 94.3 5.5 83 6-88 70-153 (170)
103 KOG0111|consensus 99.3 6.6E-12 1.4E-16 101.3 5.4 103 6-120 8-111 (298)
104 KOG1365|consensus 99.2 2.8E-11 6.1E-16 105.1 8.6 173 6-179 58-244 (508)
105 smart00361 RRM_1 RNA recogniti 99.2 4.8E-11 1E-15 82.1 7.8 60 113-172 2-69 (70)
106 KOG0128|consensus 99.2 3.6E-13 7.9E-18 127.3 -4.0 149 6-177 665-814 (881)
107 KOG0108|consensus 99.2 2.6E-11 5.6E-16 110.5 8.0 81 9-89 19-100 (435)
108 KOG4454|consensus 99.2 5.8E-12 1.3E-16 101.6 1.6 136 3-160 4-144 (267)
109 PF13893 RRM_5: RNA recognitio 99.2 1.2E-10 2.7E-15 76.3 7.5 55 116-175 1-56 (56)
110 KOG0226|consensus 99.2 3.1E-11 6.7E-16 99.6 4.8 168 11-179 99-271 (290)
111 KOG0109|consensus 99.1 7.1E-11 1.5E-15 99.2 5.8 71 100-178 3-74 (346)
112 KOG0132|consensus 99.1 8.2E-11 1.8E-15 110.5 6.8 110 6-122 419-529 (894)
113 KOG0153|consensus 99.1 4.2E-10 9.2E-15 96.8 8.3 81 91-177 220-302 (377)
114 smart00361 RRM_1 RNA recogniti 99.1 8.5E-10 1.8E-14 75.8 7.5 60 22-81 2-69 (70)
115 KOG1456|consensus 99.0 2.1E-08 4.5E-13 87.3 15.9 151 6-163 285-469 (494)
116 KOG4307|consensus 99.0 1.7E-09 3.6E-14 100.7 8.8 171 6-177 309-513 (944)
117 KOG0415|consensus 99.0 6.8E-10 1.5E-14 95.7 5.7 84 4-87 235-319 (479)
118 KOG0146|consensus 99.0 1.2E-09 2.7E-14 90.8 6.2 86 4-89 281-367 (371)
119 KOG4206|consensus 99.0 2.6E-09 5.6E-14 87.3 7.8 81 98-181 8-93 (221)
120 KOG0153|consensus 98.9 2.6E-09 5.7E-14 92.1 7.8 77 4-86 224-302 (377)
121 KOG0112|consensus 98.9 9.5E-10 2.1E-14 105.0 5.3 159 4-177 368-530 (975)
122 KOG4208|consensus 98.9 4.5E-09 9.8E-14 84.5 8.3 84 95-178 45-130 (214)
123 KOG0132|consensus 98.9 2.9E-09 6.3E-14 100.3 8.1 78 96-179 418-496 (894)
124 KOG4209|consensus 98.9 1.6E-09 3.5E-14 91.4 5.8 85 94-178 96-180 (231)
125 PF13893 RRM_5: RNA recognitio 98.9 4.5E-09 9.8E-14 68.8 6.2 54 25-83 1-55 (56)
126 KOG0116|consensus 98.9 4.5E-09 9.7E-14 95.4 7.1 81 7-87 287-367 (419)
127 KOG4208|consensus 98.8 9.8E-09 2.1E-13 82.6 7.5 81 6-86 47-129 (214)
128 KOG0533|consensus 98.8 1.3E-08 2.7E-13 85.8 8.5 85 96-181 80-165 (243)
129 KOG4661|consensus 98.7 2.1E-08 4.7E-13 91.5 7.3 81 98-178 404-485 (940)
130 KOG4676|consensus 98.7 4.2E-09 9.1E-14 92.0 2.2 154 8-165 7-213 (479)
131 KOG4661|consensus 98.7 2.6E-08 5.6E-13 91.0 7.1 80 7-86 404-484 (940)
132 KOG1548|consensus 98.7 1.5E-07 3.3E-12 81.3 10.9 79 97-176 132-219 (382)
133 KOG4209|consensus 98.7 1.9E-08 4E-13 85.0 5.1 84 4-87 97-180 (231)
134 KOG1995|consensus 98.7 7.5E-08 1.6E-12 83.8 8.6 85 96-180 63-156 (351)
135 KOG4307|consensus 98.7 1.4E-07 3.1E-12 88.1 9.9 75 100-174 868-943 (944)
136 KOG0533|consensus 98.6 2.2E-07 4.9E-12 78.3 8.3 81 5-86 80-161 (243)
137 PF04059 RRM_2: RNA recognitio 98.5 6.1E-07 1.3E-11 64.9 8.5 62 9-70 2-65 (97)
138 KOG0128|consensus 98.5 7.7E-09 1.7E-13 98.5 -2.8 156 9-164 572-732 (881)
139 KOG1457|consensus 98.5 1.5E-06 3.2E-11 70.9 10.4 93 94-186 29-126 (284)
140 PF04059 RRM_2: RNA recognitio 98.5 1.5E-06 3.3E-11 62.9 9.3 79 100-178 2-87 (97)
141 KOG4454|consensus 98.5 7.2E-08 1.6E-12 78.2 2.5 76 98-175 8-84 (267)
142 KOG4660|consensus 98.5 2.6E-07 5.6E-12 84.6 6.2 159 5-175 72-247 (549)
143 KOG4660|consensus 98.4 5E-07 1.1E-11 82.8 6.2 73 94-171 70-143 (549)
144 KOG2193|consensus 98.4 8E-08 1.7E-12 84.9 0.7 153 9-180 2-159 (584)
145 KOG0106|consensus 98.4 3.8E-07 8.3E-12 75.3 4.1 71 100-178 2-73 (216)
146 KOG0226|consensus 98.3 5.8E-07 1.3E-11 74.7 4.8 86 3-88 185-271 (290)
147 PF08777 RRM_3: RNA binding mo 98.3 3.1E-06 6.8E-11 62.6 6.9 73 101-179 3-81 (105)
148 KOG1995|consensus 98.1 3.6E-06 7.8E-11 73.5 5.3 85 4-88 62-155 (351)
149 KOG0151|consensus 98.1 1.1E-05 2.4E-10 76.1 7.7 82 5-86 171-256 (877)
150 KOG4849|consensus 98.1 9.9E-06 2.1E-10 70.3 6.8 75 99-173 80-157 (498)
151 KOG0151|consensus 98.0 8.9E-06 1.9E-10 76.6 5.8 83 96-178 171-257 (877)
152 KOG1855|consensus 97.9 6E-06 1.3E-10 73.5 3.1 68 94-161 226-306 (484)
153 PF11608 Limkain-b1: Limkain b 97.9 4.8E-05 1E-09 52.7 6.8 71 100-180 3-79 (90)
154 PF14605 Nup35_RRM_2: Nup53/35 97.9 2.4E-05 5.3E-10 50.2 5.0 53 8-67 1-53 (53)
155 PF08777 RRM_3: RNA binding mo 97.9 2.6E-05 5.5E-10 57.8 5.7 56 9-70 2-57 (105)
156 KOG0921|consensus 97.9 0.00011 2.3E-09 71.7 10.3 8 51-58 903-910 (1282)
157 PF11608 Limkain-b1: Limkain b 97.9 4.8E-05 1E-09 52.7 5.9 71 9-89 3-79 (90)
158 PF14605 Nup35_RRM_2: Nup53/35 97.8 4.3E-05 9.4E-10 49.0 5.0 52 100-158 2-53 (53)
159 KOG4210|consensus 97.8 1.6E-05 3.4E-10 69.6 3.7 82 7-88 183-265 (285)
160 KOG0921|consensus 97.8 0.00044 9.5E-09 67.6 13.5 10 24-33 956-965 (1282)
161 KOG1855|consensus 97.7 5.2E-05 1.1E-09 67.7 4.6 70 3-72 226-308 (484)
162 KOG4849|consensus 97.6 4E-05 8.6E-10 66.6 3.3 69 9-77 81-152 (498)
163 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00038 8.2E-09 50.8 7.0 76 99-175 6-89 (100)
164 COG5175 MOT2 Transcriptional r 97.5 0.00047 1E-08 59.9 7.7 81 98-178 113-203 (480)
165 KOG0129|consensus 97.5 0.00044 9.5E-09 63.4 7.7 66 5-70 367-433 (520)
166 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00047 1E-08 50.3 6.1 75 5-80 3-84 (100)
167 KOG3973|consensus 97.1 0.0076 1.6E-07 52.8 10.9 6 298-303 455-460 (465)
168 PF08675 RNA_bind: RNA binding 97.0 0.005 1.1E-07 42.8 6.9 57 5-70 6-62 (87)
169 COG5175 MOT2 Transcriptional r 96.9 0.0022 4.8E-08 55.8 6.2 80 8-87 114-203 (480)
170 KOG2314|consensus 96.9 0.00077 1.7E-08 62.4 3.6 64 6-70 56-125 (698)
171 PF10309 DUF2414: Protein of u 96.9 0.0077 1.7E-07 39.6 7.2 55 7-69 4-61 (62)
172 PF08952 DUF1866: Domain of un 96.9 0.0048 1E-07 47.8 7.2 55 115-177 52-106 (146)
173 PF10309 DUF2414: Protein of u 96.9 0.007 1.5E-07 39.8 6.9 54 99-160 5-61 (62)
174 KOG2314|consensus 96.8 0.0019 4.1E-08 59.9 5.3 73 100-173 59-139 (698)
175 KOG4676|consensus 96.8 0.0019 4E-08 57.4 4.8 77 100-176 8-87 (479)
176 KOG0115|consensus 96.8 0.003 6.5E-08 53.1 5.6 77 70-160 15-91 (275)
177 KOG0115|consensus 96.7 0.0062 1.3E-07 51.2 7.2 60 9-69 32-91 (275)
178 KOG1996|consensus 96.7 0.0058 1.2E-07 52.3 6.6 63 113-175 300-364 (378)
179 PF10567 Nab6_mRNP_bdg: RNA-re 96.5 0.035 7.7E-07 47.8 10.4 155 5-160 12-210 (309)
180 KOG2202|consensus 96.5 0.0014 3.1E-08 55.0 1.7 61 114-175 83-145 (260)
181 KOG2591|consensus 96.4 0.014 3E-07 54.3 7.8 68 98-172 174-246 (684)
182 PF08675 RNA_bind: RNA binding 96.4 0.014 3.1E-07 40.5 6.0 51 101-160 11-61 (87)
183 KOG3152|consensus 96.2 0.0031 6.7E-08 53.0 2.5 72 7-78 73-157 (278)
184 PF11627 HnRNPA1: Nuclear fact 96.2 0.0087 1.9E-07 34.2 3.5 34 266-299 4-37 (37)
185 PF07292 NID: Nmi/IFP 35 domai 96.1 0.0026 5.6E-08 45.1 1.3 68 53-120 1-73 (88)
186 PF08952 DUF1866: Domain of un 96.1 0.021 4.5E-07 44.4 6.3 55 24-86 52-106 (146)
187 KOG2591|consensus 96.1 0.017 3.6E-07 53.8 6.6 71 6-83 173-248 (684)
188 KOG3152|consensus 96.1 0.0041 8.9E-08 52.3 2.4 72 98-169 73-157 (278)
189 KOG2202|consensus 95.8 0.0026 5.7E-08 53.5 0.1 58 24-82 84-143 (260)
190 KOG2193|consensus 95.7 0.015 3.3E-07 52.2 4.6 77 100-182 2-80 (584)
191 PF15023 DUF4523: Protein of u 95.7 0.058 1.3E-06 41.5 6.9 73 5-84 83-159 (166)
192 PF14111 DUF4283: Domain of un 95.4 0.01 2.2E-07 47.0 2.1 118 11-133 18-139 (153)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 95.3 0.019 4.1E-07 46.7 3.7 67 4-70 3-75 (176)
194 KOG4285|consensus 95.3 0.13 2.9E-06 44.4 8.8 74 101-181 199-273 (350)
195 KOG2416|consensus 94.9 0.033 7.2E-07 52.3 4.4 81 93-179 438-523 (718)
196 PF07576 BRAP2: BRCA1-associat 94.9 0.38 8.1E-06 35.8 9.1 66 99-166 13-80 (110)
197 KOG1996|consensus 94.8 0.095 2.1E-06 45.1 6.5 60 21-80 299-360 (378)
198 PF15023 DUF4523: Protein of u 94.8 0.19 4.1E-06 38.7 7.4 74 95-175 82-159 (166)
199 KOG4285|consensus 94.6 0.13 2.7E-06 44.6 6.7 73 8-87 197-270 (350)
200 KOG2068|consensus 94.6 0.013 2.8E-07 51.4 0.7 77 100-176 78-161 (327)
201 KOG2135|consensus 94.4 0.023 4.9E-07 52.0 1.8 72 100-177 373-445 (526)
202 KOG2135|consensus 94.3 0.026 5.6E-07 51.6 2.1 76 7-88 371-447 (526)
203 PF03467 Smg4_UPF3: Smg-4/UPF3 94.2 0.04 8.8E-07 44.8 2.9 80 98-177 6-97 (176)
204 KOG2068|consensus 94.0 0.048 1E-06 47.9 3.0 111 8-118 77-199 (327)
205 KOG2416|consensus 94.0 0.029 6.4E-07 52.6 1.8 61 4-70 440-501 (718)
206 KOG0112|consensus 93.5 0.11 2.3E-06 51.4 4.8 59 6-70 453-511 (975)
207 KOG2318|consensus 93.3 0.5 1.1E-05 44.6 8.6 124 5-172 171-300 (650)
208 KOG2253|consensus 92.7 0.095 2.1E-06 50.0 3.0 109 4-121 36-157 (668)
209 PF07576 BRAP2: BRCA1-associat 92.6 1.2 2.6E-05 33.2 8.2 59 9-69 13-73 (110)
210 PRK11634 ATP-dependent RNA hel 92.6 2.6 5.7E-05 41.5 12.9 59 109-176 497-561 (629)
211 PF04847 Calcipressin: Calcipr 92.1 0.49 1.1E-05 38.7 6.1 61 20-86 7-70 (184)
212 KOG0804|consensus 91.1 0.9 1.9E-05 41.7 7.2 63 5-69 71-134 (493)
213 KOG2253|consensus 90.5 0.32 6.9E-06 46.6 4.0 72 94-174 35-107 (668)
214 PF04847 Calcipressin: Calcipr 90.1 1.4 3.1E-05 36.0 7.0 59 112-176 8-69 (184)
215 PF03880 DbpA: DbpA RNA bindin 89.1 2.4 5.3E-05 28.9 6.6 65 10-83 2-73 (74)
216 KOG0804|consensus 88.4 2.1 4.6E-05 39.3 7.4 67 99-167 74-142 (493)
217 KOG4574|consensus 87.4 0.44 9.5E-06 46.9 2.6 56 9-70 299-354 (1007)
218 PF11767 SET_assoc: Histone ly 86.5 4.1 8.9E-05 27.2 6.2 54 110-172 11-65 (66)
219 PF03880 DbpA: DbpA RNA bindin 86.5 4.8 0.0001 27.5 6.8 58 109-175 11-74 (74)
220 KOG4574|consensus 85.7 0.52 1.1E-05 46.5 2.1 74 102-181 301-377 (1007)
221 COG5594 Uncharacterized integr 85.5 0.66 1.4E-05 45.8 2.8 30 5-34 205-235 (827)
222 TIGR02542 B_forsyth_147 Bacter 85.5 2.2 4.8E-05 31.6 4.8 120 9-153 6-131 (145)
223 KOG4483|consensus 83.9 3.4 7.3E-05 37.5 6.2 58 96-160 388-446 (528)
224 KOG4213|consensus 83.5 0.93 2E-05 36.4 2.4 63 8-74 111-174 (205)
225 COG5638 Uncharacterized conser 82.7 7 0.00015 35.6 7.7 41 3-43 141-186 (622)
226 KOG4483|consensus 82.2 4 8.6E-05 37.0 6.0 68 5-79 388-456 (528)
227 KOG2891|consensus 81.6 4.3 9.3E-05 35.0 5.8 38 97-134 147-196 (445)
228 PF11767 SET_assoc: Histone ly 81.4 7.7 0.00017 25.9 5.8 45 18-71 10-54 (66)
229 COG5193 LHP1 La protein, small 80.8 1.3 2.8E-05 40.1 2.5 63 7-69 173-245 (438)
230 smart00596 PRE_C2HC PRE_C2HC d 78.3 3.4 7.5E-05 27.7 3.3 63 114-178 2-65 (69)
231 TIGR03636 L23_arch archaeal ri 78.2 11 0.00024 26.0 6.0 54 102-158 16-71 (77)
232 PRK14548 50S ribosomal protein 77.9 11 0.00023 26.6 5.9 54 103-159 24-79 (84)
233 PF07530 PRE_C2HC: Associated 76.3 4.4 9.5E-05 27.3 3.5 62 23-86 2-64 (68)
234 PF07530 PRE_C2HC: Associated 74.7 6.3 0.00014 26.5 4.0 63 114-178 2-65 (68)
235 PF03468 XS: XS domain; Inter 73.8 8.2 0.00018 29.0 4.8 56 101-159 10-75 (116)
236 TIGR03636 L23_arch archaeal ri 72.5 20 0.00043 24.7 6.1 56 10-68 15-72 (77)
237 PRK14548 50S ribosomal protein 72.3 19 0.0004 25.4 6.0 56 11-69 23-80 (84)
238 PF02714 DUF221: Domain of unk 70.9 6.7 0.00015 35.0 4.5 56 53-121 1-56 (325)
239 PF03468 XS: XS domain; Inter 70.0 6 0.00013 29.7 3.3 56 10-68 10-75 (116)
240 KOG3262|consensus 69.4 20 0.00043 29.1 6.2 19 113-131 88-106 (215)
241 KOG4410|consensus 68.7 16 0.00036 31.7 6.0 48 8-60 330-377 (396)
242 PF10567 Nab6_mRNP_bdg: RNA-re 67.2 10 0.00022 33.1 4.4 80 97-176 13-106 (309)
243 PF07292 NID: Nmi/IFP 35 domai 66.7 7 0.00015 27.8 2.9 31 144-174 1-33 (88)
244 KOG4008|consensus 66.6 11 0.00024 31.8 4.4 35 5-39 37-71 (261)
245 smart00596 PRE_C2HC PRE_C2HC d 65.8 7.4 0.00016 26.1 2.7 62 23-86 2-64 (69)
246 KOG4213|consensus 62.6 1.6 3.5E-05 35.0 -1.0 67 100-170 112-179 (205)
247 KOG4410|consensus 62.3 21 0.00045 31.1 5.4 48 99-151 330-377 (396)
248 KOG2295|consensus 61.8 1.1 2.3E-05 42.3 -2.5 62 7-68 230-291 (648)
249 PF14893 PNMA: PNMA 59.5 9.9 0.00021 34.2 3.2 52 6-59 16-71 (331)
250 PF15513 DUF4651: Domain of un 57.4 26 0.00057 23.0 4.1 19 22-40 8-26 (62)
251 COG0030 KsgA Dimethyladenosine 54.4 50 0.0011 28.6 6.5 34 9-42 96-129 (259)
252 PF14026 DUF4242: Protein of u 54.1 69 0.0015 22.0 8.3 59 102-162 3-68 (77)
253 PRK11901 hypothetical protein; 54.1 28 0.00061 31.0 5.0 54 110-165 253-308 (327)
254 PF02714 DUF221: Domain of unk 53.9 10 0.00022 33.8 2.5 35 144-180 1-36 (325)
255 PF00403 HMA: Heavy-metal-asso 51.4 62 0.0013 20.6 6.3 54 101-160 1-58 (62)
256 KOG3424|consensus 47.3 71 0.0015 24.0 5.4 48 18-66 33-85 (132)
257 PF08002 DUF1697: Protein of u 47.3 1E+02 0.0023 23.7 6.8 116 10-131 5-131 (137)
258 COG3254 Uncharacterized conser 47.0 49 0.0011 24.2 4.5 44 23-69 27-70 (105)
259 PRK11901 hypothetical protein; 46.8 65 0.0014 28.8 6.1 54 20-75 254-309 (327)
260 PF14893 PNMA: PNMA 46.1 15 0.00033 33.0 2.2 29 94-122 13-41 (331)
261 cd04908 ACT_Bt0572_1 N-termina 45.6 82 0.0018 20.4 7.9 48 112-163 14-62 (66)
262 KOG1295|consensus 45.3 31 0.00068 31.3 4.0 66 4-69 3-71 (376)
263 COG5193 LHP1 La protein, small 45.2 9.1 0.0002 34.8 0.7 60 100-159 175-244 (438)
264 KOG4008|consensus 44.7 19 0.00041 30.4 2.4 33 98-130 39-71 (261)
265 PF11411 DNA_ligase_IV: DNA li 44.6 17 0.00037 21.0 1.5 16 18-33 19-34 (36)
266 PTZ00191 60S ribosomal protein 42.9 97 0.0021 24.2 5.9 53 12-67 85-139 (145)
267 CHL00100 ilvH acetohydroxyacid 41.6 68 0.0015 26.0 5.1 89 22-127 57-145 (174)
268 PRK10905 cell division protein 41.5 53 0.0011 29.3 4.7 57 107-165 252-310 (328)
269 KOG4019|consensus 41.2 25 0.00055 28.5 2.5 70 100-175 11-87 (193)
270 KOG2318|consensus 41.1 41 0.00089 32.3 4.2 39 96-134 171-214 (650)
271 PF00276 Ribosomal_L23: Riboso 40.1 46 0.001 23.7 3.6 53 103-155 23-87 (91)
272 COG3227 LasB Zinc metalloprote 38.3 1.4E+02 0.0031 28.2 7.2 59 18-86 49-107 (507)
273 PF00398 RrnaAD: Ribosomal RNA 37.9 55 0.0012 28.3 4.4 23 8-30 97-119 (262)
274 KOG4019|consensus 36.3 22 0.00048 28.8 1.5 72 8-85 10-88 (193)
275 PF00403 HMA: Heavy-metal-asso 35.6 1.2E+02 0.0025 19.2 6.1 54 10-69 1-58 (62)
276 PF03439 Spt5-NGN: Early trans 35.5 61 0.0013 22.6 3.5 34 34-72 33-66 (84)
277 KOG2891|consensus 35.4 57 0.0012 28.3 3.9 39 4-42 145-195 (445)
278 PF09869 DUF2096: Uncharacteri 35.0 1.9E+02 0.0042 23.1 6.5 49 101-160 114-162 (169)
279 PF04026 SpoVG: SpoVG; InterP 34.6 74 0.0016 22.3 3.8 26 125-150 2-27 (84)
280 KOG4365|consensus 34.4 10 0.00022 35.0 -0.8 76 100-176 4-80 (572)
281 KOG3702|consensus 34.1 47 0.001 32.5 3.5 73 9-81 512-584 (681)
282 PRK10629 EnvZ/OmpR regulon mod 33.9 2E+02 0.0044 21.9 6.4 61 7-75 34-98 (127)
283 PRK05738 rplW 50S ribosomal pr 33.2 1.7E+02 0.0037 20.9 5.6 34 10-43 21-56 (92)
284 KOG4365|consensus 33.1 9.3 0.0002 35.2 -1.2 51 9-59 4-54 (572)
285 PRK01178 rps24e 30S ribosomal 32.7 1.3E+02 0.0029 21.8 4.9 48 18-66 29-81 (99)
286 PRK13259 regulatory protein Sp 32.5 86 0.0019 22.6 3.9 26 125-150 2-27 (94)
287 KOG3262|consensus 32.5 2.8E+02 0.0061 22.7 8.1 12 115-126 93-104 (215)
288 PRK09631 DNA topoisomerase IV 32.3 1.4E+02 0.003 29.6 6.5 59 8-69 220-281 (635)
289 PTZ00338 dimethyladenosine tra 31.4 84 0.0018 27.8 4.6 46 10-71 103-148 (294)
290 PHA01632 hypothetical protein 31.1 53 0.0012 20.9 2.3 21 12-32 20-40 (64)
291 COG0837 Glk Glucokinase [Carbo 30.9 1.1E+02 0.0023 27.3 4.9 71 50-134 34-104 (320)
292 KOG1175|consensus 30.8 66 0.0014 31.7 4.1 90 19-122 507-598 (626)
293 COG0030 KsgA Dimethyladenosine 30.7 55 0.0012 28.4 3.1 34 100-133 96-129 (259)
294 cd00187 TOP4c DNA Topoisomeras 30.4 2E+02 0.0043 27.2 7.0 58 9-68 226-287 (445)
295 PRK10629 EnvZ/OmpR regulon mod 30.2 2.5E+02 0.0054 21.4 7.8 63 111-181 50-115 (127)
296 TIGR01061 parC_Gpos DNA topois 30.2 1.6E+02 0.0035 29.8 6.8 59 8-68 248-310 (738)
297 KOG2854|consensus 29.9 1.7E+02 0.0037 26.3 6.1 141 8-161 81-232 (343)
298 PF14111 DUF4283: Domain of un 29.8 16 0.00034 28.5 -0.3 61 111-176 29-90 (153)
299 PF08503 DapH_N: Tetrahydrodip 29.4 2E+02 0.0044 20.1 5.8 32 144-175 43-74 (83)
300 CHL00030 rpl23 ribosomal prote 28.9 2.1E+02 0.0045 20.5 5.4 35 10-44 20-56 (93)
301 PF14026 DUF4242: Protein of u 28.9 1.9E+02 0.0042 19.7 8.4 60 11-72 3-69 (77)
302 CHL00123 rps6 ribosomal protei 28.9 1.7E+02 0.0038 21.0 5.1 58 101-160 10-81 (97)
303 COG4874 Uncharacterized protei 28.7 1.1E+02 0.0024 26.2 4.5 27 7-34 157-183 (318)
304 COG5638 Uncharacterized conser 28.2 76 0.0016 29.2 3.7 40 94-133 141-185 (622)
305 COG0481 LepA Membrane GTPase L 27.7 1.3E+02 0.0027 28.8 5.1 62 6-68 295-361 (603)
306 COG4010 Uncharacterized protei 27.7 1.8E+02 0.0038 22.8 5.0 45 106-160 118-162 (170)
307 KOG1295|consensus 27.5 82 0.0018 28.7 3.7 67 98-164 6-76 (376)
308 PRK10905 cell division protein 27.4 91 0.002 27.8 3.9 55 20-75 256-311 (328)
309 cd00874 RNA_Cyclase_Class_II R 27.2 4E+02 0.0088 24.0 8.2 47 101-148 188-237 (326)
310 COG5353 Uncharacterized protei 27.0 2.7E+02 0.0059 21.9 6.0 59 5-63 84-155 (161)
311 COG3254 Uncharacterized conser 26.8 2.2E+02 0.0047 20.9 5.1 44 113-159 26-69 (105)
312 PRK09630 DNA topoisomerase IV 26.6 1.7E+02 0.0036 27.8 5.6 59 8-69 220-281 (479)
313 PF08156 NOP5NT: NOP5NT (NUC12 26.1 21 0.00045 23.9 -0.2 37 114-160 27-63 (67)
314 KOG1177|consensus 26.0 6E+02 0.013 24.5 9.1 85 18-123 492-588 (596)
315 PF12623 Hen1_L: RNA repair, l 25.8 3.1E+02 0.0068 23.3 6.6 60 9-69 119-182 (245)
316 PF08206 OB_RNB: Ribonuclease 25.8 25 0.00055 22.6 0.2 37 140-176 7-44 (58)
317 COG2177 FtsX Cell division pro 25.7 3.6E+02 0.0079 23.9 7.5 39 4-42 56-94 (297)
318 PRK00274 ksgA 16S ribosomal RN 25.6 1.1E+02 0.0024 26.6 4.3 22 10-31 107-128 (272)
319 KOG0156|consensus 25.3 1.3E+02 0.0028 28.8 5.0 60 102-170 35-97 (489)
320 COG2608 CopZ Copper chaperone 25.3 2.1E+02 0.0046 19.0 5.5 45 9-59 4-48 (71)
321 TIGR01063 gyrA DNA gyrase, A s 25.0 1.9E+02 0.0042 29.6 6.3 59 8-68 248-310 (800)
322 PTZ00071 40S ribosomal protein 24.7 1.6E+02 0.0035 22.6 4.4 47 18-65 34-86 (132)
323 cd06405 PB1_Mekk2_3 The PB1 do 24.4 2.4E+02 0.0052 19.3 7.2 60 105-172 14-74 (79)
324 PF13193 AMP-binding_C: AMP-bi 24.1 2.2E+02 0.0047 18.7 4.8 45 24-69 1-46 (73)
325 PRK08559 nusG transcription an 24.0 1.7E+02 0.0038 22.9 4.8 31 35-70 36-66 (153)
326 TIGR01124 ilvA_2Cterm threonin 24.0 5.2E+02 0.011 24.8 8.8 52 100-153 419-470 (499)
327 KOG0862|consensus 23.9 62 0.0013 27.1 2.2 30 114-151 89-119 (216)
328 PRK08279 long-chain-acyl-CoA s 23.5 6.7E+02 0.015 24.2 11.4 113 18-156 470-593 (600)
329 COG4314 NosL Predicted lipopro 22.8 1.1E+02 0.0024 24.2 3.2 16 56-71 132-147 (176)
330 smart00434 TOP4c DNA Topoisome 22.7 2.8E+02 0.0062 26.2 6.6 59 9-68 233-295 (445)
331 COG0445 GidA Flavin-dependent 22.7 3.7E+02 0.008 26.3 7.2 38 96-133 298-335 (621)
332 KOG3432|consensus 22.5 76 0.0016 23.4 2.1 25 17-41 42-66 (121)
333 PF13820 Nucleic_acid_bd: Puta 22.2 1.4E+02 0.003 23.5 3.7 56 11-70 7-65 (149)
334 PF09707 Cas_Cas2CT1978: CRISP 22.0 1.8E+02 0.0038 20.6 3.9 49 6-57 23-71 (86)
335 PF10915 DUF2709: Protein of u 21.8 2.8E+02 0.0062 22.8 5.4 74 34-124 36-117 (238)
336 KOG2295|consensus 21.7 17 0.00037 34.6 -1.6 59 99-157 231-289 (648)
337 cd04880 ACT_AAAH-PDT-like ACT 21.3 2.5E+02 0.0055 18.5 5.5 49 21-70 12-64 (75)
338 KOG0156|consensus 21.3 2.1E+02 0.0046 27.4 5.5 65 6-79 30-97 (489)
339 PRK05560 DNA gyrase subunit A; 21.2 2.9E+02 0.0064 28.3 6.8 59 8-68 251-313 (805)
340 TIGR01639 P_fal_TIGR01639 Plas 21.0 38 0.00081 22.1 0.3 22 15-36 5-26 (61)
341 PRK06737 acetolactate synthase 20.9 2.9E+02 0.0063 18.9 6.6 67 10-79 6-73 (76)
342 PF13046 DUF3906: Protein of u 20.9 1.3E+02 0.0027 20.0 2.7 34 111-146 30-63 (64)
343 KOG1150|consensus 20.8 99 0.0021 25.6 2.7 28 14-45 59-86 (250)
344 PF09869 DUF2096: Uncharacteri 20.8 4.5E+02 0.0098 21.1 6.9 58 2-70 106-163 (169)
345 PF08734 GYD: GYD domain; Int 20.5 3.2E+02 0.0069 19.3 6.3 43 22-68 22-65 (91)
346 COG3797 Uncharacterized protei 20.4 1.5E+02 0.0032 24.0 3.6 45 98-150 98-142 (178)
347 COG0656 ARA1 Aldo/keto reducta 20.2 2.7E+02 0.0059 24.5 5.5 114 8-132 74-191 (280)
348 PF05336 DUF718: Domain of unk 20.2 3.5E+02 0.0077 19.7 5.5 43 113-158 25-67 (106)
349 PF02676 TYW3: Methyltransfera 20.1 5.1E+02 0.011 21.5 7.2 56 6-69 65-129 (205)
350 KOG3702|consensus 20.0 1E+02 0.0023 30.2 3.1 70 100-169 512-581 (681)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=3.5e-37 Score=274.74 Aligned_cols=170 Identities=23% Similarity=0.370 Sum_probs=152.0
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
+....++|||++||+++|+++|+++|++|++|++|+|+.++.++++++||||+|+++++|++||+. +...+.++.|.+.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 445788999999999999999999999999999999999999999999999999999999999975 5788899999998
Q ss_pred cCCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-C
Q psy16454 83 RAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-G 161 (304)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~ 161 (304)
++.+... ....++|||.|||+++||++|+++|++||+|+.|+|+.++.++++++||||+|+++++|++||++ +
T Consensus 183 ~a~p~~~------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 256 (346)
T TIGR01659 183 YARPGGE------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN 256 (346)
T ss_pred ccccccc------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 8765322 22346899999999999999999999999999999999999999999999999999999999987 7
Q ss_pred CcccCC--eeEEEeeccchH
Q psy16454 162 THLVKG--KKVDVKKALSKE 179 (304)
Q Consensus 162 ~~~~~g--~~i~v~~~~~~~ 179 (304)
...+.+ ++|+|+++....
T Consensus 257 g~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 257 NVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CCccCCCceeEEEEECCccc
Confidence 777765 688888887653
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.1e-31 Score=251.48 Aligned_cols=175 Identities=21% Similarity=0.468 Sum_probs=154.4
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccccC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKRA 84 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~~ 84 (304)
...++|||+|||+++|+++|+++|++||+|.+|+|+.++.+++++|||||+|.++++|++|++. +...+.++.|.+.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4678999999999999999999999999999999999999999999999999999999999975 578889999988765
Q ss_pred CCccccCC-----CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHH
Q psy16454 85 VPRTEINR-----PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACL 159 (304)
Q Consensus 85 ~~~~~~~~-----~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~ 159 (304)
........ .......++|||.|||+++++++|+++|++||.|++|+|.+++.+++++|||||+|++.++|++||+
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 43322111 1122345799999999999999999999999999999999999999999999999999999999997
Q ss_pred h-CCcccCCeeEEEeeccchHH
Q psy16454 160 K-GTHLVKGKKVDVKKALSKEE 180 (304)
Q Consensus 160 ~-~~~~~~g~~i~v~~~~~~~~ 180 (304)
. +...++|+.|+|.++.+++.
T Consensus 265 amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred HhCCCeeCCeEEEEEecCCCcc
Confidence 7 88999999999999987543
No 3
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.98 E-value=4.5e-31 Score=247.52 Aligned_cols=174 Identities=25% Similarity=0.437 Sum_probs=154.3
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeecccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKR 83 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~ 83 (304)
.+.+.++|||+|||.++|+++|+++|++||+|.+|+|+.++.++++++||||+|.+.++|++||.++...+.++.|.+..
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCccccCC------CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHH
Q psy16454 84 AVPRTEINR------PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKA 157 (304)
Q Consensus 84 ~~~~~~~~~------~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A 157 (304)
......... .......++|||.|||.++|+++|+++|++||.|..|.|+.+..++++++||||+|.+.++|++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 543322111 11112357999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh-CCcccCCeeEEEeeccc
Q psy16454 158 CLK-GTHLVKGKKVDVKKALS 177 (304)
Q Consensus 158 ~~~-~~~~~~g~~i~v~~~~~ 177 (304)
|+. ++..|.+++|.|.++..
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHhcCCcEECCEEEEEEEccC
Confidence 975 88999999999999763
No 4
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.98 E-value=2.7e-30 Score=241.79 Aligned_cols=167 Identities=23% Similarity=0.399 Sum_probs=133.7
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCC-CCcC-Ceeeccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARP-HTID-SKVVEPK 82 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~-~~~~-g~~i~~~ 82 (304)
+...++|||+|||+++||++|+++|++||+|.+|+|+.| .++++++||||+|.++++|++||+.++ ..+. ++.+.+.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 456799999999999999999999999999999999999 889999999999999999999998753 2331 2222111
Q ss_pred cCC--------------------------------------C--c--c-------------------c------------
Q psy16454 83 RAV--------------------------------------P--R--T-------------------E------------ 89 (304)
Q Consensus 83 ~~~--------------------------------------~--~--~-------------------~------------ 89 (304)
.+. + + . .
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 100 0 0 0 0
Q ss_pred ----cCCC------CCCCCcceEEEcCCCCCCCHHHHHHHHhcC--CceeEEEEeeeCCCCCccceEEEEeCChhHHHHH
Q psy16454 90 ----INRP------EAGATVKKLFVGSLRDDITEEDLKEYFGQF--GEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKA 157 (304)
Q Consensus 90 ----~~~~------~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~--G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A 157 (304)
...+ ......++|||.||++++|+++|+++|++| |.|++|.+++ +||||+|+++++|++|
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKA 285 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHH
Confidence 0000 011234689999999999999999999999 9999998763 4999999999999999
Q ss_pred HHh-CCcccCCeeEEEeeccchHH
Q psy16454 158 CLK-GTHLVKGKKVDVKKALSKEE 180 (304)
Q Consensus 158 ~~~-~~~~~~g~~i~v~~~~~~~~ 180 (304)
|+. +..+|+++.|+|+++.++..
T Consensus 286 i~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 286 MDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHhCCCEECCEEEEEEEccCCCc
Confidence 975 99999999999999987654
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=2e-30 Score=235.23 Aligned_cols=167 Identities=22% Similarity=0.432 Sum_probs=148.9
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccccCC
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKRAV 85 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~~~ 85 (304)
+.++|||+|||+++|+++|+++|++||+|.+|+|+.++.++++++||||+|.+.++|++||+. +...+.++.|.+.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 578999999999999999999999999999999999999999999999999999999999975 4788899999998876
Q ss_pred CccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcc
Q psy16454 86 PRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHL 164 (304)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~ 164 (304)
+.... ....+|||.|||.++++++|+++|++||.|..+.++.+..++.+++||||+|++.++|++||+. ++..
T Consensus 82 ~~~~~------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~ 155 (352)
T TIGR01661 82 PSSDS------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTT 155 (352)
T ss_pred ccccc------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCc
Confidence 54321 2346899999999999999999999999999999999988889999999999999999999976 7777
Q ss_pred cCC--eeEEEeeccchH
Q psy16454 165 VKG--KKVDVKKALSKE 179 (304)
Q Consensus 165 ~~g--~~i~v~~~~~~~ 179 (304)
+.+ .+|.|+++..+.
T Consensus 156 ~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 156 PSGCTEPITVKFANNPS 172 (352)
T ss_pred cCCCceeEEEEECCCCC
Confidence 766 568888876543
No 6
>KOG0117|consensus
Probab=99.97 E-value=8.3e-29 Score=216.38 Aligned_cols=172 Identities=25% Similarity=0.420 Sum_probs=142.3
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCc-CCeeecc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTI-DSKVVEP 81 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~-~g~~i~~ 81 (304)
.+..-+.|||+.||.|+.|+||..||++.|+|.+++||.|+.++.+||||||+|++.++|++|++.+ +++| .++.|.+
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999875 3333 2333333
Q ss_pred ccCC----------------------------------------------------------------------------
Q psy16454 82 KRAV---------------------------------------------------------------------------- 85 (304)
Q Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (304)
..+.
T Consensus 159 c~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn 238 (506)
T KOG0117|consen 159 CVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGN 238 (506)
T ss_pred EEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCC
Confidence 2111
Q ss_pred --------CccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHH
Q psy16454 86 --------PRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKA 157 (304)
Q Consensus 86 --------~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A 157 (304)
+..+.. +......+.|||.||+.+||||.|+++|++||.|++|+.++| ||||.|.+.++|.+|
T Consensus 239 ~~tVdWAep~~e~d-ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkA 309 (506)
T KOG0117|consen 239 AITVDWAEPEEEPD-EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKA 309 (506)
T ss_pred cceeeccCcccCCC-hhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHH
Confidence 000000 112345678999999999999999999999999999998865 999999999999999
Q ss_pred HHh-CCcccCCeeEEEeeccchHHHhhh
Q psy16454 158 CLK-GTHLVKGKKVDVKKALSKEEMAKL 184 (304)
Q Consensus 158 ~~~-~~~~~~g~~i~v~~~~~~~~~~~~ 184 (304)
|+. +..+|+|..|+|..|++..+.+..
T Consensus 310 m~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 310 MKETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred HHHhcCceecCceEEEEecCChhhhccc
Confidence 977 999999999999999998765443
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.4e-29 Score=229.70 Aligned_cols=174 Identities=24% Similarity=0.371 Sum_probs=145.0
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCC--eeeccc
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDS--KVVEPK 82 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g--~~i~~~ 82 (304)
...++|||.|||.++++++|+++|++||.|..+.++.+..++.+++||||+|++.++|++|++.+ ...+.+ ..+.+.
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVK 166 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 35678999999999999999999999999999999999888899999999999999999999865 444433 344444
Q ss_pred cCCCcccc------------------C---------------------------------------------------C-
Q psy16454 83 RAVPRTEI------------------N---------------------------------------------------R- 92 (304)
Q Consensus 83 ~~~~~~~~------------------~---------------------------------------------------~- 92 (304)
++...... . .
T Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
T TIGR01661 167 FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASP 246 (352)
T ss_pred ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCC
Confidence 43211100 0 0
Q ss_pred ----------------CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHH
Q psy16454 93 ----------------PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDK 156 (304)
Q Consensus 93 ----------------~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~ 156 (304)
+.......+|||.|||+++++++|+++|++||.|++|+|+.|..++++||||||+|++.++|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 247 PATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred ccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 0001112369999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh-CCcccCCeeEEEeeccchH
Q psy16454 157 ACLK-GTHLVKGKKVDVKKALSKE 179 (304)
Q Consensus 157 A~~~-~~~~~~g~~i~v~~~~~~~ 179 (304)
||+. ++..|+++.|+|.++.++.
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCC
Confidence 9976 9999999999999998765
No 8
>KOG4205|consensus
Probab=99.97 E-value=2.3e-30 Score=224.53 Aligned_cols=183 Identities=47% Similarity=0.791 Sum_probs=174.1
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeecccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKR 83 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~ 83 (304)
++.+.++|||++|++++|++.|+++|.+|++|.+|.+++|+.++++++|.||+|++++.+.++|....|+|+++.|++++
T Consensus 2 ~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~ 81 (311)
T KOG4205|consen 2 ESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKR 81 (311)
T ss_pred CccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCcccccee
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCc
Q psy16454 84 AVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTH 163 (304)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~ 163 (304)
+.++............++|||+.||.++++++|++.|++|+.|..+.++.|..+.++++|+||+|.+++++++++.+.-+
T Consensus 82 av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~ 161 (311)
T KOG4205|consen 82 AVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFH 161 (311)
T ss_pred ccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccccee
Confidence 99999888777777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeeEEEeeccchHHHhhhcc
Q psy16454 164 LVKGKKVDVKKALSKEEMAKLKT 186 (304)
Q Consensus 164 ~~~g~~i~v~~~~~~~~~~~~~~ 186 (304)
.|+++.|+|+.|.+++.+.....
T Consensus 162 ~~~gk~vevkrA~pk~~~~~~~~ 184 (311)
T KOG4205|consen 162 DFNGKKVEVKRAIPKEVMQSTKS 184 (311)
T ss_pred eecCceeeEeeccchhhcccccc
Confidence 99999999999999998766543
No 9
>KOG0148|consensus
Probab=99.97 E-value=2e-29 Score=207.32 Aligned_cols=167 Identities=20% Similarity=0.445 Sum_probs=149.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccCCCc
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRAVPR 87 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~~~~ 87 (304)
-.|||+.|..+++.++|++.|.+||+|.+++|++|.+|.+||||+||.|.+.++||.||+.+ ...|..|.|...|+..+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 34999999999999999999999999999999999999999999999999999999999986 67788889999998877
Q ss_pred cccCC----------CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHH
Q psy16454 88 TEINR----------PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKA 157 (304)
Q Consensus 88 ~~~~~----------~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A 157 (304)
+.... .+...+.++|||+||+..++|++|++.|++||+|.+|+|.+++ |||||.|+++|+|..|
T Consensus 143 p~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahA 216 (321)
T KOG0148|consen 143 PSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHA 216 (321)
T ss_pred ccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHH
Confidence 64322 2334566899999999999999999999999999999999764 7999999999999999
Q ss_pred HHh-CCcccCCeeEEEeeccchHHH
Q psy16454 158 CLK-GTHLVKGKKVDVKKALSKEEM 181 (304)
Q Consensus 158 ~~~-~~~~~~g~~i~v~~~~~~~~~ 181 (304)
|.. ++.+|.++.|++.|-+.....
T Consensus 217 Iv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 217 IVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred HHHhcCceeCceEEEEeccccCCCC
Confidence 976 999999999999998766543
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1.6e-28 Score=235.65 Aligned_cols=162 Identities=25% Similarity=0.477 Sum_probs=144.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccCCCcc
Q psy16454 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRAVPRT 88 (304)
Q Consensus 10 ~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~~~~~ 88 (304)
+|||+|||+++||++|+++|++||+|.+|+|++|..|+++++||||+|.++++|++|++.+ ...+.++.|.+.++....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 7999999999999999999999999999999999999999999999999999999999876 455999999998875433
Q ss_pred ccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCC
Q psy16454 89 EINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKG 167 (304)
Q Consensus 89 ~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g 167 (304)
.. ......+|||.|||.++++++|+++|++||.|..|+|+.+. ++++++||||+|++.++|++|+++ +...+++
T Consensus 82 ~~----~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~ 156 (562)
T TIGR01628 82 SL----RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLND 156 (562)
T ss_pred cc----cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecC
Confidence 22 12234689999999999999999999999999999999875 678999999999999999999977 8888999
Q ss_pred eeEEEeecc
Q psy16454 168 KKVDVKKAL 176 (304)
Q Consensus 168 ~~i~v~~~~ 176 (304)
+.|.|....
T Consensus 157 ~~i~v~~~~ 165 (562)
T TIGR01628 157 KEVYVGRFI 165 (562)
T ss_pred ceEEEeccc
Confidence 999886543
No 11
>KOG0144|consensus
Probab=99.96 E-value=4.9e-29 Score=216.89 Aligned_cols=171 Identities=29% Similarity=0.452 Sum_probs=144.7
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC--CCCcC--Ceeec
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR--PHTID--SKVVE 80 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~--~~~~~--g~~i~ 80 (304)
+.+.-+|||+-||..++|.||+++|++||.|.+|.|++|+.|+.+++||||+|.+.++|.+|+.++ .+++. ..+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 356678999999999999999999999999999999999999999999999999999999999885 33443 34555
Q ss_pred cccCCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh
Q psy16454 81 PKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
++++....+.. ...++|||+-|+..+||.+|+++|++||.|++|.|++|. .+.+||||||+|.+.|.|..||+.
T Consensus 111 vk~Ad~E~er~-----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika 184 (510)
T KOG0144|consen 111 VKYADGERERI-----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKA 184 (510)
T ss_pred ecccchhhhcc-----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHh
Confidence 66655433221 345799999999999999999999999999999999986 578999999999999999999987
Q ss_pred --CCcccCCe--eEEEeeccchHHH
Q psy16454 161 --GTHLVKGK--KVDVKKALSKEEM 181 (304)
Q Consensus 161 --~~~~~~g~--~i~v~~~~~~~~~ 181 (304)
..+++.|. +|.|+++.+++++
T Consensus 185 ~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 185 LNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred hccceeeccCCCceEEEecccCCCc
Confidence 33456554 7999999876653
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=8.2e-28 Score=230.74 Aligned_cols=174 Identities=29% Similarity=0.504 Sum_probs=150.3
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcC----Ceeec
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTID----SKVVE 80 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~----g~~i~ 80 (304)
...++|||+|||+++|+++|+++|++||+|++|.++.+. ++++++||||+|++.++|++|++.+ ...+. ++.+.
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 456789999999999999999999999999999999984 6889999999999999999999864 56666 78887
Q ss_pred cccCCCccccC------------CCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEe
Q psy16454 81 PKRAVPRTEIN------------RPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEY 148 (304)
Q Consensus 81 ~~~~~~~~~~~------------~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f 148 (304)
+.++..+.+.. .........+|||.||++++|+++|+++|++||.|++|+|+.+ .++++++||||+|
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f 333 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCF 333 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEe
Confidence 77765543321 1112345568999999999999999999999999999999998 6889999999999
Q ss_pred CChhHHHHHHHh-CCcccCCeeEEEeeccchHHH
Q psy16454 149 NDYDPVDKACLK-GTHLVKGKKVDVKKALSKEEM 181 (304)
Q Consensus 149 ~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~~~~ 181 (304)
++.++|++|+.. +...+.+++|.|.++..+++.
T Consensus 334 ~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 334 SNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred CCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 999999999976 889999999999999877654
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=8.1e-27 Score=221.61 Aligned_cols=169 Identities=20% Similarity=0.372 Sum_probs=138.9
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhC------------CceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCC
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAW------------GDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARP 71 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~------------G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~ 71 (304)
.....++|||+|||+++|+++|+++|.++ .+|..+.+ .+.++||||+|.++++|++||+++.
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l~g 244 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMALDS 244 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcCCC
Confidence 34567899999999999999999999985 23333333 3457899999999999999998888
Q ss_pred CCcCCeeeccccCCCccccC-----------------------CCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeE
Q psy16454 72 HTIDSKVVEPKRAVPRTEIN-----------------------RPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTS 128 (304)
Q Consensus 72 ~~~~g~~i~~~~~~~~~~~~-----------------------~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~ 128 (304)
..+.++.|.+.+........ ........++|||+|||+.+++++|+++|++||.|+.
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~ 324 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKA 324 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE
Confidence 88889888876543221000 0001234578999999999999999999999999999
Q ss_pred EEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccch
Q psy16454 129 VALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALSK 178 (304)
Q Consensus 129 v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~ 178 (304)
+.|+.+..+++++|||||+|.+.++|++||+. ++..|.++.|.|.++...
T Consensus 325 ~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 325 FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 99999999999999999999999999999976 889999999999998543
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=1.7e-26 Score=216.87 Aligned_cols=162 Identities=12% Similarity=0.127 Sum_probs=136.0
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh---CCCCcCCeeecccc
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA---RPHTIDSKVVEPKR 83 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~---~~~~~~g~~i~~~~ 83 (304)
++++|||+|||+++|+++|+++|++||+|.+|.|+++ |++|||+|+++++|++|++. +...+.++.|.+.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4789999999999999999999999999999999863 47999999999999999985 46789999999998
Q ss_pred CCCccccCCC------CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHH
Q psy16454 84 AVPRTEINRP------EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKA 157 (304)
Q Consensus 84 ~~~~~~~~~~------~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A 157 (304)
+..+...... .......+|+|.||++++|+++|+++|++||.|++|.|++++. +++|||+|+++++|++|
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHA 150 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHH
Confidence 8654322111 1122345799999999999999999999999999999987543 36899999999999999
Q ss_pred HHh-CCcccCC--eeEEEeeccch
Q psy16454 158 CLK-GTHLVKG--KKVDVKKALSK 178 (304)
Q Consensus 158 ~~~-~~~~~~g--~~i~v~~~~~~ 178 (304)
++. ++..|.+ +.|+|+++...
T Consensus 151 ~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 151 KAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred HHHhcCCcccCCceEEEEEEecCC
Confidence 976 8888854 57888887653
No 15
>KOG0145|consensus
Probab=99.95 E-value=3.6e-27 Score=193.02 Aligned_cols=170 Identities=22% Similarity=0.407 Sum_probs=151.5
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~ 83 (304)
.+..+.|.|.-||.++|+|||+.+|...|+|++|++++|+.++.|.||+||.|.++++|++|+..+ ...+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 455677999999999999999999999999999999999999999999999999999999999885 6778899999998
Q ss_pred CCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CC
Q psy16454 84 AVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GT 162 (304)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~ 162 (304)
+.+..+. .....|||++||...|..+|+++|++||.|..-+|+.|..++.+||.+||.|+..++|+.||+. ++
T Consensus 118 ARPSs~~------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG 191 (360)
T KOG0145|consen 118 ARPSSDS------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNG 191 (360)
T ss_pred ccCChhh------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccC
Confidence 8865443 2335899999999999999999999999999999999999999999999999999999999987 66
Q ss_pred cccCC--eeEEEeeccchHH
Q psy16454 163 HLVKG--KKVDVKKALSKEE 180 (304)
Q Consensus 163 ~~~~g--~~i~v~~~~~~~~ 180 (304)
+.-.+ .+|.|+++..+..
T Consensus 192 ~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 192 QKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred CCCCCCCCCeEEEecCCccc
Confidence 65444 4799999877644
No 16
>KOG0127|consensus
Probab=99.94 E-value=2.5e-26 Score=205.22 Aligned_cols=172 Identities=26% Similarity=0.463 Sum_probs=151.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccCCCc
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRAVPR 87 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~~~~ 87 (304)
.||||++||++++.++|.++|+.+|+|..|.++.++.+..++||+||+|+-.|+++.|++.. ..++.++.+.+..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999875 67799999988887755
Q ss_pred cccCC-----------CC-------C--CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEE
Q psy16454 88 TEINR-----------PE-------A--GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVE 147 (304)
Q Consensus 88 ~~~~~-----------~~-------~--~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~ 147 (304)
..... +. . ..+..+|.|.||||.+.+.+|+.+|+.||.|.+|.|++.. .++..|||||.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEE
Confidence 43321 00 1 1235689999999999999999999999999999999765 45667999999
Q ss_pred eCChhHHHHHHHh-CCcccCCeeEEEeeccchHHH
Q psy16454 148 YNDYDPVDKACLK-GTHLVKGKKVDVKKALSKEEM 181 (304)
Q Consensus 148 f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~~~~ 181 (304)
|.+..+|++||+. +.+.|++|+|.|.||.++...
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccccc
Confidence 9999999999988 999999999999999887653
No 17
>KOG0127|consensus
Probab=99.94 E-value=4.3e-26 Score=203.78 Aligned_cols=175 Identities=29% Similarity=0.458 Sum_probs=150.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccCCC
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRAVP 86 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~~~ 86 (304)
...|.|+|||+.+.+.+|+.+|++||.|++|.|.+.+..+.+ |||||+|.+..+|++||+.. .+.|++++|.|.|+.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 678999999999999999999999999999999977665555 99999999999999999985 7889999999999876
Q ss_pred ccccCCC----------------------------------------C--------------------------------
Q psy16454 87 RTEINRP----------------------------------------E-------------------------------- 94 (304)
Q Consensus 87 ~~~~~~~----------------------------------------~-------------------------------- 94 (304)
+...... .
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 5322110 0
Q ss_pred ------------CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhC-
Q psy16454 95 ------------AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKG- 161 (304)
Q Consensus 95 ------------~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~- 161 (304)
......+|||.|||+++|+++|.++|++||+|..+.|+.++.|+.++|.|||.|.++.+|.+||+..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 0011257999999999999999999999999999999999999999999999999999999999763
Q ss_pred -----C-cccCCeeEEEeeccchHHHhh
Q psy16454 162 -----T-HLVKGKKVDVKKALSKEEMAK 183 (304)
Q Consensus 162 -----~-~~~~g~~i~v~~~~~~~~~~~ 183 (304)
. ..+++|.|.|..+.++.+...
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~RkeA~d 383 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRKEAAD 383 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchHHHHH
Confidence 2 458999999999998877543
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=1.6e-25 Score=210.25 Aligned_cols=166 Identities=18% Similarity=0.270 Sum_probs=135.9
Q ss_pred CccCeEEEcCCCC-CCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 6 EHLRKLFIGGLDY-RTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 6 ~~~~~v~V~nLp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
...++|||+|||+ .+|+++|+++|++||.|.+|+|+.++ +++|||+|+++++|++|++. +...+.++.|.|..
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4678999999998 69999999999999999999999863 58999999999999999985 57788999999876
Q ss_pred CCCccccCC-------------------------C------CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCc--eeEEE
Q psy16454 84 AVPRTEINR-------------------------P------EAGATVKKLFVGSLRDDITEEDLKEYFGQFGE--VTSVA 130 (304)
Q Consensus 84 ~~~~~~~~~-------------------------~------~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~--v~~v~ 130 (304)
+........ + ....+..+|||.|||+++|+++|+++|++||. |+.|+
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 543211000 0 00124568999999999999999999999997 88888
Q ss_pred EeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCee------EEEeeccch
Q psy16454 131 LVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKK------VDVKKALSK 178 (304)
Q Consensus 131 i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~------i~v~~~~~~ 178 (304)
+.... + ..+++|||+|++.++|.+||.. +.+.|.++. |+|.+++++
T Consensus 428 ~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 428 FFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 86543 2 2578999999999999999976 888998885 888877653
No 19
>KOG0131|consensus
Probab=99.94 E-value=2.8e-26 Score=178.59 Aligned_cols=170 Identities=26% Similarity=0.436 Sum_probs=149.7
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~ 83 (304)
-....+|||+||+..++++.|.|+|-+.|+|+++++.+|+.+...+|||||||.++|+|+-|++.+ ..++-+++|.+..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 356789999999999999999999999999999999999999999999999999999999999886 4567899999888
Q ss_pred CCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeE-EEEeeeCCCCCccceEEEEeCChhHHHHHHHh-C
Q psy16454 84 AVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTS-VALVTEKETGKKRGFGFVEYNDYDPVDKACLK-G 161 (304)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~-v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~ 161 (304)
+...... .....+|||+||..+++|..|.+.|+.||.+.. -+|+++..|+.+++|+||.|++.|++.+|++. +
T Consensus 86 as~~~~n-----l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n 160 (203)
T KOG0131|consen 86 ASAHQKN-----LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN 160 (203)
T ss_pred ccccccc-----ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc
Confidence 7722211 122268999999999999999999999998765 47889999999999999999999999999987 8
Q ss_pred CcccCCeeEEEeeccchH
Q psy16454 162 THLVKGKKVDVKKALSKE 179 (304)
Q Consensus 162 ~~~~~g~~i~v~~~~~~~ 179 (304)
+..+..++|+|+++..+.
T Consensus 161 gq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 161 GQYLCNRPITVSYAFKKD 178 (203)
T ss_pred cchhcCCceEEEEEEecC
Confidence 899999999999987664
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=3.5e-25 Score=210.41 Aligned_cols=173 Identities=21% Similarity=0.296 Sum_probs=141.9
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRA 84 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~ 84 (304)
+..++|||+|||+++|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++|++.+ ...|.++.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 44679999999999999999999999999999999999999999999999999999999999764 67888888888776
Q ss_pred CCccccCC----------------------CCCCCCcceEEEcCCCCCC----------CHHHHHHHHhcCCceeEEEEe
Q psy16454 85 VPRTEINR----------------------PEAGATVKKLFVGSLRDDI----------TEEDLKEYFGQFGEVTSVALV 132 (304)
Q Consensus 85 ~~~~~~~~----------------------~~~~~~~~~l~v~~l~~~~----------~~~~l~~~F~~~G~v~~v~i~ 132 (304)
........ .....++++|+|.||.... ..++|+++|++||.|+.|.|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 43221100 0012356789999996421 236899999999999999998
Q ss_pred eeC---CCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccch
Q psy16454 133 TEK---ETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALSK 178 (304)
Q Consensus 133 ~~~---~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~ 178 (304)
++. .+...+|++||+|++.++|++||+. ++..|+++.|.|.+....
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 753 3345679999999999999999976 999999999999887543
No 21
>KOG0109|consensus
Probab=99.93 E-value=1e-25 Score=187.29 Aligned_cols=148 Identities=24% Similarity=0.463 Sum_probs=136.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccccCCCc
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKRAVPR 87 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~~~~~ 87 (304)
-+|||+|||.++++.+|+.+|++||+|.+|.|+++ |+||-.++...|+.|+.. ++-+|++..|.|+.++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999985 999999999999999994 577899999999988876
Q ss_pred cccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccC
Q psy16454 88 TEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVK 166 (304)
Q Consensus 88 ~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~ 166 (304)
. ..+++|+|.||...++.++|++.|++||+|++|+|++| |+||.|+..++|..|+.. ++.+|+
T Consensus 75 s--------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~ 138 (346)
T KOG0109|consen 75 S--------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQ 138 (346)
T ss_pred C--------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccc
Confidence 3 35579999999999999999999999999999999875 899999999999999966 999999
Q ss_pred CeeEEEeeccchHH
Q psy16454 167 GKKVDVKKALSKEE 180 (304)
Q Consensus 167 g~~i~v~~~~~~~~ 180 (304)
|++++|..+.++-.
T Consensus 139 gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 139 GKRMHVQLSTSRLR 152 (346)
T ss_pred cceeeeeeeccccc
Confidence 99999999887654
No 22
>KOG0145|consensus
Probab=99.92 E-value=3.6e-24 Score=175.48 Aligned_cols=173 Identities=25% Similarity=0.355 Sum_probs=144.0
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCC-c--CCeeeccc
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHT-I--DSKVVEPK 82 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~-~--~g~~i~~~ 82 (304)
.....|||.+||+.+|.+||+++|++||.|...+|+.|..++.+||.+||.|...++|+.|++.++-. . ...+|.|+
T Consensus 125 Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVK 204 (360)
T KOG0145|consen 125 IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVK 204 (360)
T ss_pred hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999875322 1 23445554
Q ss_pred cCCCccccC------------------------------------------C---------------CCCCCCcceEEEc
Q psy16454 83 RAVPRTEIN------------------------------------------R---------------PEAGATVKKLFVG 105 (304)
Q Consensus 83 ~~~~~~~~~------------------------------------------~---------------~~~~~~~~~l~v~ 105 (304)
.+....... . +.......+|||-
T Consensus 205 FannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvY 284 (360)
T KOG0145|consen 205 FANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVY 284 (360)
T ss_pred ecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEE
Confidence 433211100 0 0112234579999
Q ss_pred CCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccch
Q psy16454 106 SLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALSK 178 (304)
Q Consensus 106 ~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~ 178 (304)
||..+++|..|+++|.+||.|..|+|++|-.|.+.|||+||+..+-++|..||.. ++..+.++.+.|.+..++
T Consensus 285 NLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 285 NLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred ecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999987 899999999999887654
No 23
>KOG0124|consensus
Probab=99.91 E-value=2.2e-24 Score=184.35 Aligned_cols=174 Identities=21% Similarity=0.467 Sum_probs=153.7
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccCC
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRAV 85 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~~ 85 (304)
-.|+|||+.|.+++.|+.|+..|..||+|++|.+.+|+.|.+.|+||||||+-+|.|..|++.. ...+.++.|+|.+..
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 3588999999999999999999999999999999999999999999999999999999999986 667788999888665
Q ss_pred CccccCC-----CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh
Q psy16454 86 PRTEINR-----PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 86 ~~~~~~~-----~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
....... .++....++|||..++.+++|+||+.+|+-||+|+.|.+.++......|||+||||++..+...||..
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh
Confidence 4433222 12234567999999999999999999999999999999999998889999999999999999999976
Q ss_pred -CCcccCCeeEEEeeccchHH
Q psy16454 161 -GTHLVKGKKVDVKKALSKEE 180 (304)
Q Consensus 161 -~~~~~~g~~i~v~~~~~~~~ 180 (304)
|...+.+..++|-.+.+++.
T Consensus 272 MNlFDLGGQyLRVGk~vTPP~ 292 (544)
T KOG0124|consen 272 MNLFDLGGQYLRVGKCVTPPD 292 (544)
T ss_pred cchhhcccceEecccccCCCc
Confidence 88999999999987766544
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=1.7e-22 Score=189.47 Aligned_cols=168 Identities=23% Similarity=0.409 Sum_probs=138.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccccCCC
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKRAVP 86 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~~~~ 86 (304)
.++|||+|||.++|+++|+++|++||.|..|.|+.++.++++++||||+|.+.++|++|++. +...|.++.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68999999999999999999999999999999999999999999999999999999999975 47788889888877431
Q ss_pred cccc-----------------------------------C-----------------------------C----------
Q psy16454 87 RTEI-----------------------------------N-----------------------------R---------- 92 (304)
Q Consensus 87 ~~~~-----------------------------------~-----------------------------~---------- 92 (304)
.... . .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 1000 0 0
Q ss_pred ----------CCCCCCcceEEEcCCCCCCC----------HHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChh
Q psy16454 93 ----------PEAGATVKKLFVGSLRDDIT----------EEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYD 152 (304)
Q Consensus 93 ----------~~~~~~~~~l~v~~l~~~~~----------~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~ 152 (304)
.....+.++|+|.||....+ .+||+++|++||.|+.|.|... ...|++||+|++++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~e 421 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSVD 421 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCHH
Confidence 00113456788999854433 3689999999999999998633 45789999999999
Q ss_pred HHHHHHHh-CCcccCCeeEEEeeccchH
Q psy16454 153 PVDKACLK-GTHLVKGKKVDVKKALSKE 179 (304)
Q Consensus 153 ~a~~A~~~-~~~~~~g~~i~v~~~~~~~ 179 (304)
+|++|++. ++..|+++.|.|.+.....
T Consensus 422 ~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 422 AALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred HHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 99999977 9999999999998876543
No 25
>KOG0123|consensus
Probab=99.90 E-value=1.1e-22 Score=182.81 Aligned_cols=154 Identities=23% Similarity=0.427 Sum_probs=140.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccCCCc
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRAVPR 87 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~~~~ 87 (304)
..|||+ +++|+..|.++|+++++|++|++.+|. | +.+||||.|.++++|++||+.. ...+.++++.+.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468998 999999999999999999999999997 6 9999999999999999999987 56689999999887754
Q ss_pred cccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccC
Q psy16454 88 TEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVK 166 (304)
Q Consensus 88 ~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~ 166 (304)
+.. |||.||+.++|..+|.++|+.||+|.+|++..+.+- +++| ||+|+++++|++||++ ++..+.
T Consensus 76 ~~~-----------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~ai~~~ng~ll~ 141 (369)
T KOG0123|consen 76 PSL-----------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESAKKAIEKLNGMLLN 141 (369)
T ss_pred Cce-----------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHHHHHhcCcccC
Confidence 432 999999999999999999999999999999998653 9999 9999999999999987 999999
Q ss_pred CeeEEEeeccchHHHh
Q psy16454 167 GKKVDVKKALSKEEMA 182 (304)
Q Consensus 167 g~~i~v~~~~~~~~~~ 182 (304)
+++|.|.....+++..
T Consensus 142 ~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 142 GKKIYVGLFERKEERE 157 (369)
T ss_pred CCeeEEeeccchhhhc
Confidence 9999998888877654
No 26
>KOG4211|consensus
Probab=99.90 E-value=3.3e-21 Score=171.22 Aligned_cols=177 Identities=16% Similarity=0.255 Sum_probs=145.3
Q ss_pred CCCCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeec
Q psy16454 1 ITKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVE 80 (304)
Q Consensus 1 ~~~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~ 80 (304)
|..+......|-+++|||++|++||++||+.+ .|+++++.+ .+++..|-|||||+++|++++||++....+..+.|+
T Consensus 3 i~~e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIE 79 (510)
T KOG4211|consen 3 IENEGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIE 79 (510)
T ss_pred cccCCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEE
Confidence 34566777889999999999999999999999 577766655 578899999999999999999999998889999999
Q ss_pred cccCCCccccC-----CCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHH
Q psy16454 81 PKRAVPRTEIN-----RPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVD 155 (304)
Q Consensus 81 ~~~~~~~~~~~-----~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~ 155 (304)
|-.+...+... .+........|.+..||+.||++||.++|+..-.|....++.....+++.+-|||.|++.++|+
T Consensus 80 Vf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 80 VFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred EEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHH
Confidence 87775443211 1222235568999999999999999999999866655343444446779999999999999999
Q ss_pred HHHHhCCcccCCeeEEEeeccchHH
Q psy16454 156 KACLKGTHLVKGKKVDVKKALSKEE 180 (304)
Q Consensus 156 ~A~~~~~~~~~g~~i~v~~~~~~~~ 180 (304)
+||.++.+.|..+-|+|..+...+.
T Consensus 160 ~Al~rhre~iGhRYIEvF~Ss~~e~ 184 (510)
T KOG4211|consen 160 IALGRHRENIGHRYIEVFRSSRAEV 184 (510)
T ss_pred HHHHHHHHhhccceEEeehhHHHHH
Confidence 9999999999999999988765554
No 27
>KOG0148|consensus
Probab=99.89 E-value=4.6e-23 Score=169.93 Aligned_cols=141 Identities=24% Similarity=0.449 Sum_probs=119.0
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeecccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKR 83 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~ 83 (304)
.+++.++|||+||+.++||+-|..||.++|+|++|+|+.+ .+.+.+
T Consensus 2 ~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~w 47 (321)
T KOG0148|consen 2 GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNW 47 (321)
T ss_pred CCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhcccc
Confidence 4567899999999999999999999999999999999986 111222
Q ss_pred CCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CC
Q psy16454 84 AVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GT 162 (304)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~ 162 (304)
+... .............+||..|...++-|+|++.|.+||+|.+++|++|..|+|+|||+||.|-+.++|+.||.. ++
T Consensus 48 a~~p-~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnG 126 (321)
T KOG0148|consen 48 ATAP-GNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNG 126 (321)
T ss_pred ccCc-ccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCC
Confidence 2211 111112223356899999999999999999999999999999999999999999999999999999999976 99
Q ss_pred cccCCeeEEEeeccchH
Q psy16454 163 HLVKGKKVDVKKALSKE 179 (304)
Q Consensus 163 ~~~~g~~i~v~~~~~~~ 179 (304)
..|..|.|+-.|+..++
T Consensus 127 qWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 127 QWLGRRTIRTNWATRKP 143 (321)
T ss_pred eeeccceeeccccccCc
Confidence 99999999999997776
No 28
>KOG0110|consensus
Probab=99.88 E-value=2.7e-22 Score=184.82 Aligned_cols=174 Identities=25% Similarity=0.405 Sum_probs=146.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCC---CCcccEEEEEeCCHHHHHHHHHhCC-CCcCCeeecccc
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQT---KKSRGFGFITYSSAHMVDDAQAARP-HTIDSKVVEPKR 83 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~---~~~kG~aFV~f~~~e~a~~al~~~~-~~~~g~~i~~~~ 83 (304)
.++|||.||++++|.++|..+|...|.|.+|.|...++. -.|.||+||+|.++++|+.|+++++ +.++++.+.++.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 344999999999999999999999999999988876543 2577999999999999999999976 899999999998
Q ss_pred CCCccccCC---CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh
Q psy16454 84 AVPRTEINR---PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 84 ~~~~~~~~~---~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
+..++.... .......++|.|.|||+.++..+|+++|..||.|..|+|+........+|||||+|-++.+|.+|+..
T Consensus 595 S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 595 SENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred ccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 873332211 11223357999999999999999999999999999999998755566799999999999999999977
Q ss_pred -CCcccCCeeEEEeeccchHHH
Q psy16454 161 -GTHLVKGKKVDVKKALSKEEM 181 (304)
Q Consensus 161 -~~~~~~g~~i~v~~~~~~~~~ 181 (304)
...-+.||.|.++|+.....+
T Consensus 675 l~STHlyGRrLVLEwA~~d~~~ 696 (725)
T KOG0110|consen 675 LGSTHLYGRRLVLEWAKSDNTM 696 (725)
T ss_pred hcccceechhhheehhccchHH
Confidence 556689999999999776554
No 29
>KOG0147|consensus
Probab=99.87 E-value=1e-22 Score=182.99 Aligned_cols=178 Identities=24% Similarity=0.411 Sum_probs=154.8
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPK 82 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~ 82 (304)
.++.+.++||+--|+..+++.+|.++|+.+|+|.+|.|+.|+.+.++|+.|||+|.+.+.+..|+.+....+.+.+|.++
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQ 253 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEec
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCccccCC--------CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHH
Q psy16454 83 RAVPRTEINR--------PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPV 154 (304)
Q Consensus 83 ~~~~~~~~~~--------~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a 154 (304)
.......... .....+..+|||+||++++++++|+.+|++||.|..|.+..|.+|+.++||+||+|.+.++|
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 7553322111 11123344599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-CCcccCCeeEEEeeccchHH
Q psy16454 155 DKACLK-GTHLVKGKKVDVKKALSKEE 180 (304)
Q Consensus 155 ~~A~~~-~~~~~~g~~i~v~~~~~~~~ 180 (304)
.+|++. ++.+|-|+.|+|.....+..
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred HHHHHHhccceecCceEEEEEeeeecc
Confidence 999876 88999999999876654433
No 30
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=2.6e-20 Score=146.48 Aligned_cols=85 Identities=29% Similarity=0.585 Sum_probs=78.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
....++|||.|||+++||++|+++|++||.|++|.|+.|+.++++++||||+|+++++|++||+. +.+.|++++|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34557899999999999999999999999999999999999999999999999999999999975 88999999999999
Q ss_pred ccchHH
Q psy16454 175 ALSKEE 180 (304)
Q Consensus 175 ~~~~~~ 180 (304)
+..++.
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 876543
No 31
>KOG0146|consensus
Probab=99.84 E-value=5.1e-21 Score=157.61 Aligned_cols=174 Identities=23% Similarity=0.398 Sum_probs=142.6
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCC--CCcCC--eeecc
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARP--HTIDS--KVVEP 81 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~--~~~~g--~~i~~ 81 (304)
-+.++|||+.|.+.-.|||++.+|..||+|++|.+++.+ ++.+||+|||+|.+..+|..||..++ .++.+ ..+.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 377899999999999999999999999999999999984 68899999999999999999998853 22322 22333
Q ss_pred ccCCCccccCC---------------------------------------------------------------------
Q psy16454 82 KRAVPRTEINR--------------------------------------------------------------------- 92 (304)
Q Consensus 82 ~~~~~~~~~~~--------------------------------------------------------------------- 92 (304)
+.+....+...
T Consensus 96 K~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~ 175 (371)
T KOG0146|consen 96 KFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLA 175 (371)
T ss_pred EeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccc
Confidence 33322111100
Q ss_pred --------------------------------------------------------------------------------
Q psy16454 93 -------------------------------------------------------------------------------- 92 (304)
Q Consensus 93 -------------------------------------------------------------------------------- 92 (304)
T Consensus 176 A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~A 255 (371)
T KOG0146|consen 176 AAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAA 255 (371)
T ss_pred cCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhh
Confidence
Q ss_pred -----------------------CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeC
Q psy16454 93 -----------------------PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYN 149 (304)
Q Consensus 93 -----------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~ 149 (304)
..+-.+..+|||-.||.+..+.+|.+.|-+||.|++.+|+.|+.|+.+|.|+||.|+
T Consensus 256 aypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfD 335 (371)
T KOG0146|consen 256 AYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFD 335 (371)
T ss_pred hcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecC
Confidence 000123357999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHh-CCcccCCeeEEEeeccchHH
Q psy16454 150 DYDPVDKACLK-GTHLVKGKKVDVKKALSKEE 180 (304)
Q Consensus 150 ~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~~~ 180 (304)
++.++++||.. |+..|.=++|+|...+++.+
T Consensus 336 Np~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 336 NPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred CchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 99999999976 99999999999988877754
No 32
>KOG0123|consensus
Probab=99.84 E-value=3.2e-20 Score=166.86 Aligned_cols=169 Identities=25% Similarity=0.455 Sum_probs=146.8
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccCC
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRAV 85 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~~ 85 (304)
+...|||.||++++|.++|.++|+.||+|.+|+++++.+- +++| ||+|+++++|++|++.. +..+.++.+.+-...
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 4444999999999999999999999999999999998653 9999 99999999999999985 667788999888877
Q ss_pred CccccCCCCCC--CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CC
Q psy16454 86 PRTEINRPEAG--ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GT 162 (304)
Q Consensus 86 ~~~~~~~~~~~--~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~ 162 (304)
.+++...+... ...+.++|.+++.+++++.|.++|..++.|+.+.++.+.. +++++|+||.|+++++|+.|++. +.
T Consensus 152 ~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l~~ 230 (369)
T KOG0123|consen 152 RKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETLNG 230 (369)
T ss_pred chhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC-CCCCCccceeecChhHHHHHHHhccC
Confidence 77665544433 4556899999999999999999999999999999998864 56999999999999999999977 88
Q ss_pred cccCCeeEEEeeccchH
Q psy16454 163 HLVKGKKVDVKKALSKE 179 (304)
Q Consensus 163 ~~~~g~~i~v~~~~~~~ 179 (304)
..+.+..+.|..+..+.
T Consensus 231 ~~~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 231 KIFGDKELYVGRAQKKS 247 (369)
T ss_pred CcCCccceeecccccch
Confidence 88888999998776633
No 33
>KOG0105|consensus
Probab=99.84 E-value=1.2e-19 Score=141.88 Aligned_cols=151 Identities=18% Similarity=0.294 Sum_probs=124.8
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~ 83 (304)
...+++|||+|||.++-+.||+++|.+|+.|.+|.|...+ ..-.||||+|+++.+|+.|+... .-.+++..|.|+.
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 3568999999999999999999999999999999987543 23469999999999999999875 6778888888887
Q ss_pred CCCccccC--------------------CCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccce
Q psy16454 84 AVPRTEIN--------------------RPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGF 143 (304)
Q Consensus 84 ~~~~~~~~--------------------~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~ 143 (304)
+..-.... -+.......+|.|+.||.+.+|+||+++..+.|.|....+.+| ++
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~ 152 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GV 152 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cc
Confidence 66432111 1333445578999999999999999999999999999998876 37
Q ss_pred EEEEeCChhHHHHHHHh-CCccc
Q psy16454 144 GFVEYNDYDPVDKACLK-GTHLV 165 (304)
Q Consensus 144 afV~f~~~~~a~~A~~~-~~~~~ 165 (304)
+.|+|...|+++-||.+ +...+
T Consensus 153 GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 153 GVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeeeeehhhHHHHHHhhccccc
Confidence 99999999999999976 44333
No 34
>KOG0144|consensus
Probab=99.83 E-value=2.2e-20 Score=163.16 Aligned_cols=171 Identities=26% Similarity=0.420 Sum_probs=143.8
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCC--c--CCeeecccc
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHT--I--DSKVVEPKR 83 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~--~--~g~~i~~~~ 83 (304)
.++|||+.|++.+||.||+++|++||.|++|.|++++ .+.|||||||+|++.|.|..|++.++.+ + ...++.|++
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 6889999999999999999999999999999999994 6899999999999999999999986433 2 345566666
Q ss_pred CCCccccCC-----------------------------------------------------------------------
Q psy16454 84 AVPRTEINR----------------------------------------------------------------------- 92 (304)
Q Consensus 84 ~~~~~~~~~----------------------------------------------------------------------- 92 (304)
+.++.+..-
T Consensus 203 ADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~ 282 (510)
T KOG0144|consen 203 ADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAA 282 (510)
T ss_pred cccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhh
Confidence 554332100
Q ss_pred ----------------------------C-C-------------------------------------------------
Q psy16454 93 ----------------------------P-E------------------------------------------------- 94 (304)
Q Consensus 93 ----------------------------~-~------------------------------------------------- 94 (304)
+ .
T Consensus 283 ~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa 362 (510)
T KOG0144|consen 283 AATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAA 362 (510)
T ss_pred hcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccc
Confidence 0 0
Q ss_pred ---------------------------------------------------------CCCCcceEEEcCCCCCCCHHHHH
Q psy16454 95 ---------------------------------------------------------AGATVKKLFVGSLRDDITEEDLK 117 (304)
Q Consensus 95 ---------------------------------------------------------~~~~~~~l~v~~l~~~~~~~~l~ 117 (304)
+-.....|||.+||-+.-+.+|.
T Consensus 363 ~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~ 442 (510)
T KOG0144|consen 363 SLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLI 442 (510)
T ss_pred cccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHH
Confidence 00122469999999999999999
Q ss_pred HHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccchH
Q psy16454 118 EYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALSKE 179 (304)
Q Consensus 118 ~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~~ 179 (304)
..|.+||.|...++..|+.|+-+|.|.||.|+++.+|.+||.. +...+..++++|...+++.
T Consensus 443 ~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 443 ATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred HHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 9999999999999999999999999999999999999999976 9999999999998776553
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.80 E-value=4.3e-18 Score=160.32 Aligned_cols=80 Identities=21% Similarity=0.496 Sum_probs=70.7
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRA 84 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~ 84 (304)
...++|||+|||+++++++|+++|+.||+|++|+|++++.++++||||||+|++.++|++|++.+ ...+.++.|.|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34579999999999999999999999999999999999999999999999999999999999875 55677777776544
Q ss_pred C
Q psy16454 85 V 85 (304)
Q Consensus 85 ~ 85 (304)
.
T Consensus 282 i 282 (612)
T TIGR01645 282 V 282 (612)
T ss_pred C
Confidence 3
No 36
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=9e-18 Score=132.03 Aligned_cols=84 Identities=32% Similarity=0.564 Sum_probs=77.4
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
...+++|||+|||+++|+++|+++|++||+|.+|+|+.++.++++++||||+|+++++|++|++. +.+.|+++.|.|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34678899999999999999999999999999999999999999999999999999999999985 57889999999998
Q ss_pred CCCcc
Q psy16454 84 AVPRT 88 (304)
Q Consensus 84 ~~~~~ 88 (304)
+.++.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 87543
No 37
>KOG4212|consensus
Probab=99.74 E-value=5.9e-17 Score=142.04 Aligned_cols=167 Identities=22% Similarity=0.318 Sum_probs=135.7
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhh-hCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeecccc
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFE-AWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKR 83 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~ 83 (304)
...+.|||.|||+++..++|++||. +.|+|+.|.++.| .++++|++|.|||+++|.+++|++.+ .+++.+++|.++.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 4556799999999999999999995 6689999999998 57999999999999999999999986 6788999988876
Q ss_pred CCCccccCC-----------------------------------------------------------------------
Q psy16454 84 AVPRTEINR----------------------------------------------------------------------- 92 (304)
Q Consensus 84 ~~~~~~~~~----------------------------------------------------------------------- 92 (304)
....+..+.
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 443211100
Q ss_pred -----C--C-CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCc
Q psy16454 93 -----P--E-AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTH 163 (304)
Q Consensus 93 -----~--~-~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~ 163 (304)
+ . ......++||.||.+.+..+.|++.|.-.|.|+.|.+-.|++- .++|||.|+|+.+-+|.+||.+ +..
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG-~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEG-NSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecccc-ccCCeeEEEecchHHHHHHHHhhccC
Confidence 0 0 0223457999999999999999999999999999999998864 8999999999999999999977 444
Q ss_pred ccCCeeEEEee
Q psy16454 164 LVKGKKVDVKK 174 (304)
Q Consensus 164 ~~~g~~i~v~~ 174 (304)
-+..++..+..
T Consensus 280 g~~~~~~~~Rl 290 (608)
T KOG4212|consen 280 GLFDRRMTVRL 290 (608)
T ss_pred CCccccceeec
Confidence 45556555544
No 38
>KOG4206|consensus
Probab=99.73 E-value=1.8e-16 Score=128.65 Aligned_cols=164 Identities=20% Similarity=0.325 Sum_probs=125.4
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHH----HhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCee
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKS----HFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKV 78 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~----~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~ 78 (304)
+-.+..||||.||+..+..++|+. +|++||.|.+|.... +.+.+|-|||.|.+.+.|-.|+.++ +-.+-+++
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 344556999999999999999998 999999999998876 5678999999999999999998875 55566777
Q ss_pred eccccCCCccccCC--------------------------------------------CCCCCCcceEEEcCCCCCCCHH
Q psy16454 79 VEPKRAVPRTEINR--------------------------------------------PEAGATVKKLFVGSLRDDITEE 114 (304)
Q Consensus 79 i~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~l~v~~l~~~~~~~ 114 (304)
+.+.++......-. .....+...||+.|||..++.+
T Consensus 82 mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e 161 (221)
T KOG4206|consen 82 MRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESE 161 (221)
T ss_pred hheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHH
Confidence 77666553321100 0113455689999999999999
Q ss_pred HHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccC-CeeEEEeec
Q psy16454 115 DLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVK-GKKVDVKKA 175 (304)
Q Consensus 115 ~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~-g~~i~v~~~ 175 (304)
.|..+|++|.-..+|+++... ++.|||+|.+...+..|... ....+- ...+.|..+
T Consensus 162 ~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 162 MLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred HHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 999999999999999887643 36899999988877777654 333332 555666544
No 39
>KOG4211|consensus
Probab=99.71 E-value=9.3e-16 Score=136.76 Aligned_cols=168 Identities=18% Similarity=0.217 Sum_probs=128.5
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAV 85 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~ 85 (304)
...-.|.|++||+.||++||.+||+-+-.|.+..++.....+++.+-|||.|++++.|++||..+...|..+.|+|.++.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 45678999999999999999999999977776443444455679999999999999999999987777777777664322
Q ss_pred Ccccc---------------------------------------C------------------C---------------C
Q psy16454 86 PRTEI---------------------------------------N------------------R---------------P 93 (304)
Q Consensus 86 ~~~~~---------------------------------------~------------------~---------------~ 93 (304)
..+.. . . +
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 10000 0 0 0
Q ss_pred CC---------------CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHH
Q psy16454 94 EA---------------GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC 158 (304)
Q Consensus 94 ~~---------------~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~ 158 (304)
.. ......+++..||+..++.+|.++|+..-.+ .|.|... ++++..+-|+|+|.+.++|..|+
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhh
Confidence 00 0111468899999999999999999987544 5655443 57889999999999999999999
Q ss_pred HhCCcccCCeeEEEeec
Q psy16454 159 LKGTHLVKGKKVDVKKA 175 (304)
Q Consensus 159 ~~~~~~~~g~~i~v~~~ 175 (304)
.++...+..+-|++...
T Consensus 339 skd~anm~hrYVElFln 355 (510)
T KOG4211|consen 339 GKDGANMGHRYVELFLN 355 (510)
T ss_pred ccCCcccCcceeeeccc
Confidence 99999999998887554
No 40
>KOG0149|consensus
Probab=99.70 E-value=3.2e-17 Score=133.36 Aligned_cols=82 Identities=34% Similarity=0.713 Sum_probs=77.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeec
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKA 175 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~ 175 (304)
+...++|||++|+|+|..|+|+++|++||+|++..|+.|+.++++|||+||+|.+.|+|++|++..+..|+||+..+..+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred cc
Q psy16454 176 LS 177 (304)
Q Consensus 176 ~~ 177 (304)
..
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 44
No 41
>KOG0113|consensus
Probab=99.69 E-value=9.3e-17 Score=134.62 Aligned_cols=101 Identities=28% Similarity=0.505 Sum_probs=84.9
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeE
Q psy16454 92 RPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKV 170 (304)
Q Consensus 92 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i 170 (304)
......+.++|||.-|+++|+|..|+..|+.||+|+.|.|+.|+.|++++|||||+|+++.++.+|.+. +..+|+++.|
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 334456788999999999999999999999999999999999999999999999999999999999977 8899999998
Q ss_pred EEeeccc--hHHHhhhccCCCCCC
Q psy16454 171 DVKKALS--KEEMAKLKTRGGFGG 192 (304)
Q Consensus 171 ~v~~~~~--~~~~~~~~~~~~~~g 192 (304)
.|.+..- .+-+.+++..++-++
T Consensus 174 ~VDvERgRTvkgW~PRRLGGGLGg 197 (335)
T KOG0113|consen 174 LVDVERGRTVKGWLPRRLGGGLGG 197 (335)
T ss_pred EEEecccccccccccccccCCcCC
Confidence 8876543 334445444444333
No 42
>KOG0106|consensus
Probab=99.68 E-value=6.4e-17 Score=132.56 Aligned_cols=153 Identities=25% Similarity=0.443 Sum_probs=123.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccCCCc
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRAVPR 87 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~~~~ 87 (304)
..|||++||+.+.+++|++||..|+.|.+|.+.. +|+||+|++..+|+.|+..+ ...+.+..+.+.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 5799999999999999999999999999998876 58999999999999998775 45556666666665532
Q ss_pred c--------------ccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhH
Q psy16454 88 T--------------EINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDP 153 (304)
Q Consensus 88 ~--------------~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~ 153 (304)
. .............|.|.+|+..+.+++|+++|.++|.+....+ ...++||+|++.++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhh
Confidence 1 1111223445578999999999999999999999999855544 23489999999999
Q ss_pred HHHHHHh-CCcccCCeeEEEeeccc
Q psy16454 154 VDKACLK-GTHLVKGKKVDVKKALS 177 (304)
Q Consensus 154 a~~A~~~-~~~~~~g~~i~v~~~~~ 177 (304)
|.+|+.+ +...+.++.|++.....
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~~~~ 170 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEKNSR 170 (216)
T ss_pred hhhcchhccchhhcCceeeecccCc
Confidence 9999987 88899999999944433
No 43
>KOG0110|consensus
Probab=99.68 E-value=3.8e-16 Score=144.62 Aligned_cols=166 Identities=23% Similarity=0.296 Sum_probs=123.4
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCC-CcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPH-TIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~-~~~g~~i~~~~ 83 (304)
....+.|+|+|||..+..++|.++|..||+|..|.+.+. + -.|.|+|.++.+|.+|+..+.. .+...++.+.|
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---G---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCcc---c---ceeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 445678999999999999999999999999999955432 1 1599999999999999887422 22222222221
Q ss_pred CCC-------c---------cc-----------c-----CCC------------CCCCCcceEEEcCCCCCCCHHHHHHH
Q psy16454 84 AVP-------R---------TE-----------I-----NRP------------EAGATVKKLFVGSLRDDITEEDLKEY 119 (304)
Q Consensus 84 ~~~-------~---------~~-----------~-----~~~------------~~~~~~~~l~v~~l~~~~~~~~l~~~ 119 (304)
+.. + .. . .+. ......++|||.||++++|.++|..+
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 110 0 00 0 000 00112234999999999999999999
Q ss_pred HhcCCceeEEEEeeeCCCC---CccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeecc
Q psy16454 120 FGQFGEVTSVALVTEKETG---KKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKAL 176 (304)
Q Consensus 120 F~~~G~v~~v~i~~~~~~~---~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~ 176 (304)
|...|.|..+.|...+..- -+.||+||+|.++++|++|++. +.+.|+++.|.|+.+.
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999999888665321 2459999999999999999987 7799999999999987
No 44
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=5.9e-16 Score=138.57 Aligned_cols=84 Identities=21% Similarity=0.402 Sum_probs=77.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
......++|||.+||+++||++|+++|++|++|++|+|+.|+.++++++||||+|+++++|++||+. +...+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3445668999999999999999999999999999999999999999999999999999999999975 999999999999
Q ss_pred eeccc
Q psy16454 173 KKALS 177 (304)
Q Consensus 173 ~~~~~ 177 (304)
.++.+
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 88754
No 45
>KOG0149|consensus
Probab=99.66 E-value=2.6e-16 Score=128.14 Aligned_cols=80 Identities=34% Similarity=0.623 Sum_probs=75.2
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAV 85 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~ 85 (304)
...++|||++|+|++++++|+++|++||+|++..|+.|+.+++||||+||+|.+.|+|++|++..+..|++|...+..+.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999988776654
No 46
>KOG0122|consensus
Probab=99.65 E-value=1.6e-15 Score=124.02 Aligned_cols=83 Identities=29% Similarity=0.430 Sum_probs=78.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
..+..+|.|.||+.+++|++|+++|.+||.|.+|.|.+|++|+.+||||||+|.+.++|.+||+. +++-++.--|.|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34677999999999999999999999999999999999999999999999999999999999987 88889999999999
Q ss_pred ccch
Q psy16454 175 ALSK 178 (304)
Q Consensus 175 ~~~~ 178 (304)
++++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9875
No 47
>KOG1457|consensus
Probab=99.63 E-value=5.1e-15 Score=119.41 Aligned_cols=154 Identities=18% Similarity=0.330 Sum_probs=109.2
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEE-eCCCCCCcccEEEEEeCCHHHHHHHHHhCC-CCcC---Ce
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVM-KDPQTKKSRGFGFITYSSAHMVDDAQAARP-HTID---SK 77 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~-~~~~~~~~kG~aFV~f~~~e~a~~al~~~~-~~~~---g~ 77 (304)
+++...+||||.+||.|+...||..+|..|--.+.+.|. +++....++-++||+|.+..+|.+|+.+++ ..++ ..
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 345679999999999999999999999999777776665 345555678899999999999999998853 2221 11
Q ss_pred eeccccCCCcccc--CC----------------------------------C------------C---------------
Q psy16454 78 VVEPKRAVPRTEI--NR----------------------------------P------------E--------------- 94 (304)
Q Consensus 78 ~i~~~~~~~~~~~--~~----------------------------------~------------~--------------- 94 (304)
.+.++.+++.... .+ + .
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 1222111110000 00 0 0
Q ss_pred -----------------CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHH
Q psy16454 95 -----------------AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKA 157 (304)
Q Consensus 95 -----------------~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A 157 (304)
......+|||.||..+++||+|+.+|+.|--...++|... .+ -..|||+|++.+.|..|
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDA 264 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHH
Confidence 0122357999999999999999999999977666666432 12 23799999999999999
Q ss_pred HHh
Q psy16454 158 CLK 160 (304)
Q Consensus 158 ~~~ 160 (304)
+..
T Consensus 265 m~~ 267 (284)
T KOG1457|consen 265 MNH 267 (284)
T ss_pred HHH
Confidence 865
No 48
>KOG0121|consensus
Probab=99.62 E-value=1.5e-15 Score=111.98 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=77.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeec
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
..+.+|||+||++.++||+|.++|+++|+|..|.+-.|+.+..+.|||||+|-+.++|+.||.. +...++.++|+|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 3557999999999999999999999999999999999999999999999999999999999988 999999999999998
Q ss_pred cchHH
Q psy16454 176 LSKEE 180 (304)
Q Consensus 176 ~~~~~ 180 (304)
.--.+
T Consensus 114 ~GF~e 118 (153)
T KOG0121|consen 114 AGFVE 118 (153)
T ss_pred ccchh
Confidence 65443
No 49
>KOG1548|consensus
Probab=99.62 E-value=2.6e-14 Score=122.33 Aligned_cols=165 Identities=17% Similarity=0.294 Sum_probs=129.0
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCcee--------EEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcC
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVV--------DVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTID 75 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~--------~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~ 75 (304)
+...+.|||.+||.++|.+|+.++|++||.|. .|+|.++.+ ++.||=|.+.|-..++++.|++.+ ...+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 45567799999999999999999999999874 588888854 899999999999999999999986 56677
Q ss_pred CeeeccccCCCcc--------------------------------ccCCCCCCCCcceEEEcCCCC----CCC-------
Q psy16454 76 SKVVEPKRAVPRT--------------------------------EINRPEAGATVKKLFVGSLRD----DIT------- 112 (304)
Q Consensus 76 g~~i~~~~~~~~~--------------------------------~~~~~~~~~~~~~l~v~~l~~----~~~------- 112 (304)
++.+.|..+.=.. ....+......++|.|.||=. ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 8888876543100 000122234456888888832 223
Q ss_pred HHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 113 EEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 113 ~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
+++|++.+++||.|.+|.|+.. .+.|.+.|.|.+.++|+.||+. ++..|++|+|+.+.
T Consensus 290 kedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i 348 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASI 348 (382)
T ss_pred HHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEE
Confidence 4567778899999999988743 4678999999999999999976 99999999998754
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.62 E-value=3.8e-15 Score=102.52 Aligned_cols=69 Identities=35% Similarity=0.785 Sum_probs=65.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEE
Q psy16454 102 LFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVD 171 (304)
Q Consensus 102 l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~ 171 (304)
|||.|||+++|+++|+++|++||.|..+.+..+ .+++.+++|||+|+++++|++|++. ++..+++++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 6788999999999999999999985 99999999875
No 51
>KOG4207|consensus
Probab=99.61 E-value=1.6e-15 Score=120.99 Aligned_cols=85 Identities=24% Similarity=0.389 Sum_probs=78.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
........|.|.||.+.|+.++|+.+|++||.|.+|.|+.|+.|..++|||||.|.+..+|+.|++. +..+|+++.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 3445668999999999999999999999999999999999999999999999999999999999977 999999999999
Q ss_pred eeccch
Q psy16454 173 KKALSK 178 (304)
Q Consensus 173 ~~~~~~ 178 (304)
..|.--
T Consensus 88 q~aryg 93 (256)
T KOG4207|consen 88 QMARYG 93 (256)
T ss_pred hhhhcC
Confidence 887543
No 52
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.61 E-value=1.1e-14 Score=126.76 Aligned_cols=130 Identities=28% Similarity=0.520 Sum_probs=110.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCC-CCcCCeeeccccCC-
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARP-HTIDSKVVEPKRAV- 85 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~-~~~~g~~i~~~~~~- 85 (304)
.++|||+|||.++|+++|+++|.+|++|..|.+..++.+++++++|||+|.++++|+.|++.+. ..+.++.+.+.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999999999899999999999999999999999986 88999999998854
Q ss_pred ---CccccC--------------CCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCC
Q psy16454 86 ---PRTEIN--------------RPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKET 137 (304)
Q Consensus 86 ---~~~~~~--------------~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~ 137 (304)
++.... ..........+++.+++..++.+++..+|..++.+..+.+......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDG 263 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCC
Confidence 222221 0122344567999999999999999999999999977776655443
No 53
>KOG0147|consensus
Probab=99.60 E-value=5.7e-15 Score=133.41 Aligned_cols=166 Identities=21% Similarity=0.400 Sum_probs=125.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccCCC
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRAVP 86 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~~~ 86 (304)
...|||+||-+++|+++|+.+|+.||.|+.|.++.|..|+++|+|+||+|.+.++|++|++.+ ..++-++.|.|.....
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 344999999999999999999999999999999999889999999999999999999997664 5666677666532111
Q ss_pred ccccCC------------------------------------------------------------------CCCC----
Q psy16454 87 RTEINR------------------------------------------------------------------PEAG---- 96 (304)
Q Consensus 87 ~~~~~~------------------------------------------------------------------~~~~---- 96 (304)
+..... ..+.
T Consensus 358 r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p 437 (549)
T KOG0147|consen 358 RVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASP 437 (549)
T ss_pred ecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccc
Confidence 100000 0001
Q ss_pred ---CCcceEEEcCCCCC--CC--------HHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CC
Q psy16454 97 ---ATVKKLFVGSLRDD--IT--------EEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GT 162 (304)
Q Consensus 97 ---~~~~~l~v~~l~~~--~~--------~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~ 162 (304)
.++.++.+.|+=.. .| .|||.+.+.+||.|..|.|.++ +-|+.||.|.+.++|.+|+.. +.
T Consensus 438 ~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhg 512 (549)
T KOG0147|consen 438 AFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHG 512 (549)
T ss_pred ccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhh
Confidence 23344555555211 11 3678888899999988877543 338999999999999999976 99
Q ss_pred cccCCeeEEEeeccch
Q psy16454 163 HLVKGKKVDVKKALSK 178 (304)
Q Consensus 163 ~~~~g~~i~v~~~~~~ 178 (304)
..|.++.|.+++....
T Consensus 513 rWF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 513 RWFAGRMITAKYLPLE 528 (549)
T ss_pred hhhccceeEEEEeehh
Confidence 9999999999876544
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=6.8e-15 Score=101.23 Aligned_cols=68 Identities=24% Similarity=0.558 Sum_probs=62.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeee
Q psy16454 11 LFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVV 79 (304)
Q Consensus 11 v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i 79 (304)
|||+|||.++|+++|+++|++||+|..+.++.+ .++.++++|||+|+++++|++|++ .+...+.++.|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 799999999999999999999999999999998 678899999999999999999999 55777777665
No 55
>KOG0129|consensus
Probab=99.58 E-value=4.7e-14 Score=126.80 Aligned_cols=174 Identities=24% Similarity=0.356 Sum_probs=128.1
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCcee-EEEEEeC-CCCCCccc---EEEEEeCCHHHHHHHHHhCCC------
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVV-DVVVMKD-PQTKKSRG---FGFITYSSAHMVDDAQAARPH------ 72 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~-~v~i~~~-~~~~~~kG---~aFV~f~~~e~a~~al~~~~~------ 72 (304)
.+..+++|||+.||++++|++|...|..||.+. +.-.... ..--..+| |+|+.|+++..+++.+.+-..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~y 334 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYY 334 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceE
Confidence 456789999999999999999999999999863 2221111 11123466 999999999999988876322
Q ss_pred ------CcCCeeeccccCCCcc---ccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHh-cCCceeEEEEeeeCCCCCccc
Q psy16454 73 ------TIDSKVVEPKRAVPRT---EINRPEAGATVKKLFVGSLRDDITEEDLKEYFG-QFGEVTSVALVTEKETGKKRG 142 (304)
Q Consensus 73 ------~~~g~~i~~~~~~~~~---~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~-~~G~v~~v~i~~~~~~~~~~G 142 (304)
++..+.+.+.++.... .....+.-.+.+||||+.||.-++.++|..+|+ -||.|..+-|-.|++-+.+||
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 2223333333322111 122344556788999999999999999999999 599999999999988889999
Q ss_pred eEEEEeCChhHHHHHHHhCC----cccCCeeEEEeeccc
Q psy16454 143 FGFVEYNDYDPVDKACLKGT----HLVKGKKVDVKKALS 177 (304)
Q Consensus 143 ~afV~f~~~~~a~~A~~~~~----~~~~g~~i~v~~~~~ 177 (304)
-+-|+|.+..+-.+||.+.- +.--.++|+|+.-..
T Consensus 415 aGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPYv~ 453 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPYVM 453 (520)
T ss_pred cceeeecccHHHHHHHhhheEEEeccccceeeeecceec
Confidence 99999999999999997622 223455788876553
No 56
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.1e-14 Score=122.50 Aligned_cols=76 Identities=24% Similarity=0.394 Sum_probs=70.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeeccc
Q psy16454 99 VKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALS 177 (304)
Q Consensus 99 ~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~~ 177 (304)
.++|||+|||+.+|+++|+++|+.||.|++|.|+.++. .++||||+|+++++|+.||++++..|.++.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 47999999999999999999999999999999998864 46899999999999999999999999999999998864
No 57
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.58 E-value=8.7e-15 Score=137.90 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=93.9
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhC--CceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAW--GDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
..++|||+|||+++|+++|+++|++| |+|++|++++ +||||+|++.++|++|++. +...|.++.|.|.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999 9999998764 4999999999999999985 57889999999999
Q ss_pred CCCccccCC----------------------CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCc
Q psy16454 84 AVPRTEINR----------------------PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGE 125 (304)
Q Consensus 84 ~~~~~~~~~----------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~ 125 (304)
+.+...... ......+.++++.||+++++++.|+++|..++.
T Consensus 304 Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~ 367 (578)
T TIGR01648 304 AKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGP 367 (578)
T ss_pred ccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcc
Confidence 877543200 111235678999999999999999999998875
No 58
>KOG0122|consensus
Probab=99.57 E-value=9.6e-15 Score=119.45 Aligned_cols=82 Identities=21% Similarity=0.338 Sum_probs=76.7
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRA 84 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~ 84 (304)
.++++|-|.|||.+++|++|++||.+||+|..|.|.+|+.|+.+||||||.|++.++|++||+.+ ..-++...|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 47889999999999999999999999999999999999999999999999999999999999986 67788888899998
Q ss_pred CCc
Q psy16454 85 VPR 87 (304)
Q Consensus 85 ~~~ 87 (304)
.|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 865
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=1.4e-14 Score=99.86 Aligned_cols=69 Identities=33% Similarity=0.694 Sum_probs=62.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEE
Q psy16454 102 LFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVD 171 (304)
Q Consensus 102 l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~ 171 (304)
|+|+|||+++++++|+++|+.++.|..+.+..++. ++++++|||+|.++++|++|++. +...++++.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 89999999999999999999988 55889999875
No 60
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=1e-14 Score=100.51 Aligned_cols=68 Identities=29% Similarity=0.511 Sum_probs=61.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCC-CCcCCeee
Q psy16454 11 LFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARP-HTIDSKVV 79 (304)
Q Consensus 11 v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~-~~~~g~~i 79 (304)
|||+|||+++|+++|+++|+.++.|..+.++.+++ +.++++|||+|.++++|++|++.++ +.++++.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 79999999999999999999999999999999977 8999999999999999999999976 77887766
No 61
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3.6e-14 Score=119.49 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=72.0
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCCC
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAVP 86 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~~ 86 (304)
..++|||+|||+++|+++|+++|+.||+|++|.|+.+.. +++||||+|+++++|+.||.++...|.++.|.|.++..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 368999999999999999999999999999999998754 56899999999999999999889999999999988765
Q ss_pred cc
Q psy16454 87 RT 88 (304)
Q Consensus 87 ~~ 88 (304)
..
T Consensus 80 ~~ 81 (260)
T PLN03120 80 YQ 81 (260)
T ss_pred CC
Confidence 43
No 62
>KOG0121|consensus
Probab=99.54 E-value=1.2e-14 Score=107.36 Aligned_cols=81 Identities=21% Similarity=0.351 Sum_probs=74.0
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~ 83 (304)
...+++|||+||++-+||++|.+||+++|+|..|.|=.|+.++...|||||+|.+.++|+.|++.. .+.++.++|.+.+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 357899999999999999999999999999999999999999999999999999999999999875 6778888888776
Q ss_pred CC
Q psy16454 84 AV 85 (304)
Q Consensus 84 ~~ 85 (304)
..
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 54
No 63
>KOG0125|consensus
Probab=99.54 E-value=2.2e-14 Score=121.97 Aligned_cols=85 Identities=27% Similarity=0.496 Sum_probs=76.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
.....++|+|+|||+...|.||+..|++||.|.+|+|+.+. .-+|||+||+|++.+||++|-++ +...+.||+|+|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 34556899999999999999999999999999999999874 35899999999999999999977 9999999999999
Q ss_pred eccchHHH
Q psy16454 174 KALSKEEM 181 (304)
Q Consensus 174 ~~~~~~~~ 181 (304)
.+..+-..
T Consensus 170 ~ATarV~n 177 (376)
T KOG0125|consen 170 NATARVHN 177 (376)
T ss_pred ccchhhcc
Confidence 98776543
No 64
>KOG0105|consensus
Probab=99.53 E-value=7.2e-14 Score=109.66 Aligned_cols=76 Identities=22% Similarity=0.444 Sum_probs=67.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeecc
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKAL 176 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~ 176 (304)
...+|||+|||.++.+.+|+++|.+|+.|.+|.+-.. ..+..||||+|+++.+|+.||.. +...+++..|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4578999999999999999999999999999988433 34567999999999999999987 8899999999999874
No 65
>KOG0107|consensus
Probab=99.51 E-value=5.3e-14 Score=109.58 Aligned_cols=76 Identities=25% Similarity=0.463 Sum_probs=69.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccc
Q psy16454 99 VKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALS 177 (304)
Q Consensus 99 ~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~ 177 (304)
.++|||+||+..+++.||+.+|..||+|..|+|..+ +.|||||||+++.||+.|+.. +...|.+..|+|+...-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 479999999999999999999999999999999875 458999999999999999976 99999999999998865
Q ss_pred hH
Q psy16454 178 KE 179 (304)
Q Consensus 178 ~~ 179 (304)
..
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 53
No 66
>KOG0113|consensus
Probab=99.50 E-value=6.8e-14 Score=117.57 Aligned_cols=83 Identities=28% Similarity=0.487 Sum_probs=75.7
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccccC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKRA 84 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~~ 84 (304)
++-+||||.-|+++++|.+|+..|+.||+|+.|+|+.++.|++++|||||+|+++.++.+|.+. ....|+++.|.|...
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 6789999999999999999999999999999999999999999999999999999999999776 478899999888765
Q ss_pred CCcc
Q psy16454 85 VPRT 88 (304)
Q Consensus 85 ~~~~ 88 (304)
..+.
T Consensus 179 RgRT 182 (335)
T KOG0113|consen 179 RGRT 182 (335)
T ss_pred cccc
Confidence 5443
No 67
>KOG1365|consensus
Probab=99.50 E-value=4.3e-14 Score=122.34 Aligned_cols=169 Identities=15% Similarity=0.229 Sum_probs=127.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhCC----ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeecccc
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAWG----DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKR 83 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~G----~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~ 83 (304)
.-.|.+++||+++|+.++.++|..-- .++.|.+++. .+++..|-|||.|..+++|+.||..+...+..+.|++-+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34567789999999999999996432 3456777765 357888999999999999999999887777777666644
Q ss_pred CCCcccc-------------------------CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCc-eeE--EEEeeeC
Q psy16454 84 AVPRTEI-------------------------NRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGE-VTS--VALVTEK 135 (304)
Q Consensus 84 ~~~~~~~-------------------------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~-v~~--v~i~~~~ 135 (304)
+...+.. ..........+|.+.+||+.++.|+|.++|..|-. |.. |.++.+.
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 3321110 00111223568999999999999999999998863 333 6666553
Q ss_pred CCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccch
Q psy16454 136 ETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALSK 178 (304)
Q Consensus 136 ~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~ 178 (304)
.+++.|-|||+|.++|+|.+|+.+ +++.+..+.|+|..+..+
T Consensus 320 -qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 320 -QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred -CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 578999999999999999999877 667777999999766443
No 68
>KOG0124|consensus
Probab=99.50 E-value=5.6e-13 Score=114.89 Aligned_cols=169 Identities=21% Similarity=0.390 Sum_probs=124.9
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCC-CCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARP-HTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~-~~~~g~~i~~~~ 83 (304)
.+..++|||..+-++++|++|+.+|+.||+|..|.+-+.+.....|||+||||.+..+...|+...+ ..+.+..+.|-.
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 4567889999999999999999999999999999999999999999999999999888888877643 233444444433
Q ss_pred CCCccccCC-----------------------------------------------------------------------
Q psy16454 84 AVPRTEINR----------------------------------------------------------------------- 92 (304)
Q Consensus 84 ~~~~~~~~~----------------------------------------------------------------------- 92 (304)
+...+....
T Consensus 287 ~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~ 366 (544)
T KOG0124|consen 287 CVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVIT 366 (544)
T ss_pred ccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceec
Confidence 221110000
Q ss_pred ------C-------------------------------------------------------------------CCCCCc
Q psy16454 93 ------P-------------------------------------------------------------------EAGATV 99 (304)
Q Consensus 93 ------~-------------------------------------------------------------------~~~~~~ 99 (304)
+ .....+
T Consensus 367 ~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S 446 (544)
T KOG0124|consen 367 GVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQES 446 (544)
T ss_pred cCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccC
Confidence 0 001234
Q ss_pred ceEEEcCC--CCCCCH---HHHHHHHhcCCceeEEEEeeeCCCCCc----cceEEEEeCChhHHHHHHHh-CCcccCCee
Q psy16454 100 KKLFVGSL--RDDITE---EDLKEYFGQFGEVTSVALVTEKETGKK----RGFGFVEYNDYDPVDKACLK-GTHLVKGKK 169 (304)
Q Consensus 100 ~~l~v~~l--~~~~~~---~~l~~~F~~~G~v~~v~i~~~~~~~~~----~G~afV~f~~~~~a~~A~~~-~~~~~~g~~ 169 (304)
+.|.+.|+ |.+++| .+|++.+.+||.|.+|.|...+.+... ---.||+|....++.+|++. ++..|.+++
T Consensus 447 ~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~ 526 (544)
T KOG0124|consen 447 TVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRK 526 (544)
T ss_pred cEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCce
Confidence 55777776 455543 578899999999999999877654311 11369999999999999977 888899998
Q ss_pred EEEe
Q psy16454 170 VDVK 173 (304)
Q Consensus 170 i~v~ 173 (304)
|..+
T Consensus 527 VvAE 530 (544)
T KOG0124|consen 527 VVAE 530 (544)
T ss_pred eehh
Confidence 8654
No 69
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.9e-13 Score=113.32 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=69.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeecc
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKAL 176 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~ 176 (304)
...+|||.||++.+|+++|+++|+.||+|.+|.|+++.. .++||||+|+++++|+.||++++..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 347899999999999999999999999999999998854 4579999999999999999999999999999997754
No 70
>KOG0107|consensus
Probab=99.47 E-value=1.1e-13 Score=107.92 Aligned_cols=78 Identities=22% Similarity=0.415 Sum_probs=68.8
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRA 84 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~ 84 (304)
.-.++|||+||+.++++.||+.+|..||+|.+|+|-..+ .+||||||+++.+|+.|+..+ ...|++..|.|+..
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 347899999999999999999999999999999998864 489999999999999999886 78889988888776
Q ss_pred CCcc
Q psy16454 85 VPRT 88 (304)
Q Consensus 85 ~~~~ 88 (304)
.-+.
T Consensus 83 ~G~~ 86 (195)
T KOG0107|consen 83 TGRP 86 (195)
T ss_pred cCCc
Confidence 6544
No 71
>KOG0120|consensus
Probab=99.46 E-value=6e-13 Score=121.75 Aligned_cols=175 Identities=23% Similarity=0.357 Sum_probs=128.8
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~ 81 (304)
..+...+++||++||..+++++++|++..|+++....++.+..++.+++|||.+|.++.....|++.+ ...+-++.+.+
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 45567788999999999999999999999999999999999999999999999999999999998875 34445566666
Q ss_pred ccCCCccccCC------------------CCCCCCcceEEEcCCC--CCC-CH-------HHHHHHHhcCCceeEEEEee
Q psy16454 82 KRAVPRTEINR------------------PEAGATVKKLFVGSLR--DDI-TE-------EDLKEYFGQFGEVTSVALVT 133 (304)
Q Consensus 82 ~~~~~~~~~~~------------------~~~~~~~~~l~v~~l~--~~~-~~-------~~l~~~F~~~G~v~~v~i~~ 133 (304)
..+........ .....++..|.+.|+= .++ ++ |+|+..+.+|+.|..|.|++
T Consensus 364 q~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr 443 (500)
T KOG0120|consen 364 QRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPR 443 (500)
T ss_pred ehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCC
Confidence 55443221111 1111223334444331 111 11 34566677899999999987
Q ss_pred eCC---CCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccc
Q psy16454 134 EKE---TGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALS 177 (304)
Q Consensus 134 ~~~---~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~ 177 (304)
+.. ..-..|-.||+|.+.+++++|++. .+.+|.++.|...+...
T Consensus 444 ~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 444 PYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 722 222356799999999999999977 99999999998877643
No 72
>KOG4212|consensus
Probab=99.46 E-value=2.2e-12 Score=113.67 Aligned_cols=72 Identities=22% Similarity=0.433 Sum_probs=65.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
+.++|+|.|||+++||+.|++-|..||.|..++|+ +.+++++ .|.|.++++|+.|+.. +...++++.|.|.+
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 34679999999999999999999999999999995 4567776 9999999999999976 99999999999976
No 73
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.45 E-value=4.7e-13 Score=110.99 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=70.2
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCCC
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAVP 86 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~~ 86 (304)
...+|||+||++++|+++|+++|+.||+|.+|+|+++. .++++|||+|+++++|+.|+.++...|.++.|.+.++..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 45799999999999999999999999999999999884 445799999999999999999999999999998887654
No 74
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=8.3e-13 Score=90.51 Aligned_cols=71 Identities=41% Similarity=0.725 Sum_probs=64.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 101 ~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
+|+|.+||.++++++|+++|++||.|..+.+..+. +.++++|||+|.+.++|++|++. +...+.+++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998776 67889999999999999999987 6688999998873
No 75
>KOG0130|consensus
Probab=99.43 E-value=2.4e-13 Score=101.30 Aligned_cols=88 Identities=25% Similarity=0.463 Sum_probs=80.4
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEE
Q psy16454 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVD 171 (304)
Q Consensus 93 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~ 171 (304)
|+.+.....|||.++...++|++|.+.|..||+|+.|.+..|+.|+..||||+|+|++.+.|++||.. |...+.+.+|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 34445556899999999999999999999999999999999999999999999999999999999977 88999999999
Q ss_pred EeeccchHH
Q psy16454 172 VKKALSKEE 180 (304)
Q Consensus 172 v~~~~~~~~ 180 (304)
|.|+..+..
T Consensus 146 VDw~Fv~gp 154 (170)
T KOG0130|consen 146 VDWCFVKGP 154 (170)
T ss_pred EEEEEecCC
Confidence 999987654
No 76
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=9e-13 Score=89.98 Aligned_cols=70 Identities=43% Similarity=0.767 Sum_probs=64.3
Q ss_pred EcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 104 VGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 104 v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
|.+||+++++++|+++|++||.|..+.+..++.+.+++++|||+|.+.++|++|++. +...+.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 578999999999999999999999999999887889999999999999999999977 6688899988873
No 77
>KOG1456|consensus
Probab=99.42 E-value=3.7e-12 Score=110.14 Aligned_cols=167 Identities=13% Similarity=0.143 Sum_probs=128.4
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh---CCCCcCCee
Q psy16454 2 TKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA---RPHTIDSKV 78 (304)
Q Consensus 2 ~~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~---~~~~~~g~~ 78 (304)
+..+..+-.|+|++|-..++|.+|.+.++.||+|..+.++..+. .|.|+|++.+.|++|+.. +...+.+..
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq~ 98 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQQ 98 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCch
Confidence 34567788899999999999999999999999999998887533 799999999999999765 245566777
Q ss_pred eccccCCCccccCC-CCCCCCcceE--EEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHH
Q psy16454 79 VEPKRAVPRTEINR-PEAGATVKKL--FVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVD 155 (304)
Q Consensus 79 i~~~~~~~~~~~~~-~~~~~~~~~l--~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~ 155 (304)
....++.++..... .+...+.+.| .|-|--+.+|.|.|..++...|+|.+|.|++. ++. .|.|||++.+.|+
T Consensus 99 Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~Aq 173 (494)
T KOG1456|consen 99 ALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQ 173 (494)
T ss_pred hhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHH
Confidence 76666654433332 2222333333 34566688999999999999999999999875 332 6999999999999
Q ss_pred HHHHh-CCccc--CCeeEEEeeccchH
Q psy16454 156 KACLK-GTHLV--KGKKVDVKKALSKE 179 (304)
Q Consensus 156 ~A~~~-~~~~~--~g~~i~v~~~~~~~ 179 (304)
+|.+. ++..| .-.+|+|++|++..
T Consensus 174 rAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 174 RAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred HHHhhcccccccccceeEEEEecCcce
Confidence 99876 55554 55678888887654
No 78
>KOG4207|consensus
Probab=99.42 E-value=2.9e-13 Score=108.15 Aligned_cols=82 Identities=32% Similarity=0.521 Sum_probs=75.6
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~ 82 (304)
+-+...+|-|-||.+.+|.++|..+|++||.|-+|.|..|+.|..+++||||.|.+..+|++|++++ ...++++.|.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 4467789999999999999999999999999999999999999999999999999999999999987 778899998877
Q ss_pred cCC
Q psy16454 83 RAV 85 (304)
Q Consensus 83 ~~~ 85 (304)
.+.
T Consensus 89 ~ar 91 (256)
T KOG4207|consen 89 MAR 91 (256)
T ss_pred hhh
Confidence 654
No 79
>KOG1190|consensus
Probab=99.42 E-value=6.2e-12 Score=109.98 Aligned_cols=161 Identities=17% Similarity=0.201 Sum_probs=124.8
Q ss_pred cCeEEEcCCC-CCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccCC
Q psy16454 8 LRKLFIGGLD-YRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRAV 85 (304)
Q Consensus 8 ~~~v~V~nLp-~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~~ 85 (304)
...|.|.||. ..+|.+.|..+|.-||.|..|+|+.++.+ -|.|.+.+...|+.|++.+ .+.+.++.|.+..++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 5788899996 55999999999999999999999987553 6999999999999999986 778888888887655
Q ss_pred CccccCC-----------------------------CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCC
Q psy16454 86 PRTEINR-----------------------------PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKE 136 (304)
Q Consensus 86 ~~~~~~~-----------------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~ 136 (304)
-...... .....++.+|.++|+|.+++||+|+++|.+-|-+++......
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~-- 449 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ-- 449 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC--
Confidence 3211100 001245668999999999999999999999876655443332
Q ss_pred CCCccceEEEEeCChhHHHHHHHh-CCcccCCe-eEEEeeccc
Q psy16454 137 TGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGK-KVDVKKALS 177 (304)
Q Consensus 137 ~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~-~i~v~~~~~ 177 (304)
+.+-+|++.+++.|+|..|+.. +.+.+... -++|+++++
T Consensus 450 --kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 450 --KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred --CCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 2344999999999999999865 67766544 688877654
No 80
>KOG0114|consensus
Probab=99.41 E-value=1e-12 Score=93.55 Aligned_cols=82 Identities=21% Similarity=0.350 Sum_probs=70.7
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~ 81 (304)
-+|+..+.|||+|||+++|.+++.++|.+||.|.+|+|=..+. .+|.|||.|++..+|++|+..+ ...++.+.+.+
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 3577889999999999999999999999999999999976554 5799999999999999999886 56677888777
Q ss_pred ccCCCc
Q psy16454 82 KRAVPR 87 (304)
Q Consensus 82 ~~~~~~ 87 (304)
.+..+.
T Consensus 90 lyyq~~ 95 (124)
T KOG0114|consen 90 LYYQPE 95 (124)
T ss_pred EecCHH
Confidence 666543
No 81
>smart00362 RRM_2 RNA recognition motif.
Probab=99.41 E-value=1.9e-12 Score=88.69 Aligned_cols=70 Identities=29% Similarity=0.495 Sum_probs=62.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCC-CCcCCeeecc
Q psy16454 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARP-HTIDSKVVEP 81 (304)
Q Consensus 10 ~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~-~~~~g~~i~~ 81 (304)
+|||.|||.++++++|+++|++||+|..+.++.++ +.++++|||+|.+.++|++|++.++ ..+.++.+.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999999876 6788999999999999999998764 6677776654
No 82
>KOG0125|consensus
Probab=99.40 E-value=7.2e-13 Score=112.79 Aligned_cols=83 Identities=25% Similarity=0.522 Sum_probs=74.6
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~ 83 (304)
+...++|+|.|||+..-|.||+..|++||+|.+|.|+.+ ..-||||+||+|++.++|++|.+++ .+.|.+++|+|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 345688999999999999999999999999999999985 4568999999999999999998875 7889999999999
Q ss_pred CCCccc
Q psy16454 84 AVPRTE 89 (304)
Q Consensus 84 ~~~~~~ 89 (304)
+..+..
T Consensus 171 ATarV~ 176 (376)
T KOG0125|consen 171 ATARVH 176 (376)
T ss_pred cchhhc
Confidence 887743
No 83
>PLN03213 repressor of silencing 3; Provisional
Probab=99.40 E-value=1.3e-12 Score=116.79 Aligned_cols=78 Identities=24% Similarity=0.495 Sum_probs=69.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCCh--hHHHHHHHh-CCcccCCeeEEEe
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDY--DPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~--~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
....+|||+||++.+++++|+++|++||.|.+|.|+ ++++ ||||||+|.+. +++++||.. ++..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 345799999999999999999999999999999999 4566 89999999987 678999976 9999999999999
Q ss_pred eccch
Q psy16454 174 KALSK 178 (304)
Q Consensus 174 ~~~~~ 178 (304)
.|++.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 99654
No 84
>KOG0114|consensus
Probab=99.40 E-value=3e-12 Score=91.18 Aligned_cols=84 Identities=25% Similarity=0.407 Sum_probs=73.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
.+-.+.|||.|||+++|.|++-++|.+||.|..|+|-..++ .+|.|||.|++..+|++|++. ....+.++.+.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 34456899999999999999999999999999999977654 578999999999999999987 88999999999988
Q ss_pred ccchHHHh
Q psy16454 175 ALSKEEMA 182 (304)
Q Consensus 175 ~~~~~~~~ 182 (304)
-.+.....
T Consensus 92 yq~~~~~~ 99 (124)
T KOG0114|consen 92 YQPEDAFK 99 (124)
T ss_pred cCHHHHHH
Confidence 77665543
No 85
>KOG0111|consensus
Probab=99.39 E-value=2.8e-13 Score=109.18 Aligned_cols=84 Identities=29% Similarity=0.516 Sum_probs=78.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeec
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
...++|||++|..+++|..|...|-+||.|++|.|+.|.++++.++|+||+|+..|+|.+||.. +..++.++.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 4557999999999999999999999999999999999999999999999999999999999976 889999999999999
Q ss_pred cchHH
Q psy16454 176 LSKEE 180 (304)
Q Consensus 176 ~~~~~ 180 (304)
++...
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 77643
No 86
>KOG1190|consensus
Probab=99.38 E-value=1.8e-12 Score=113.38 Aligned_cols=159 Identities=13% Similarity=0.166 Sum_probs=112.1
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC---CCCcCCeeeccc
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR---PHTIDSKVVEPK 82 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~---~~~~~g~~i~~~ 82 (304)
++++.|+++|||+++||+||.+++.+||.|+.+.+++-++ -|||||++.++|...+... ...+.++.+.+.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 4789999999999999999999999999999999988654 7999999998887733321 112233333332
Q ss_pred cCCCc------------------------cc----c------CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeE
Q psy16454 83 RAVPR------------------------TE----I------NRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTS 128 (304)
Q Consensus 83 ~~~~~------------------------~~----~------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~ 128 (304)
++.-+ +. . -........-+++|.++-+.++-|.|..+|++||.|.+
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlK 179 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLK 179 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEE
Confidence 21100 00 0 00111223457889999999999999999999999998
Q ss_pred EEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 129 VALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 129 v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
|.-+.... .-.|+|.|.+++.|..|... ++..|..-.|.++.
T Consensus 180 IiTF~Knn----~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrI 222 (492)
T KOG1190|consen 180 IITFTKNN----GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRI 222 (492)
T ss_pred EEEEeccc----chhhhhhccchhhHHHHHHhccCCcccCceeEEEe
Confidence 87664322 12499999999999999765 66665444444433
No 87
>PLN03213 repressor of silencing 3; Provisional
Probab=99.38 E-value=7e-13 Score=118.42 Aligned_cols=79 Identities=18% Similarity=0.260 Sum_probs=69.5
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCH--HHHHHHHHhC-CCCcCCeeecc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSA--HMVDDAQAAR-PHTIDSKVVEP 81 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~--e~a~~al~~~-~~~~~g~~i~~ 81 (304)
.....+|||+||++++|+++|+++|.+||.|.+|.|++ .++ |+||||+|.+. +++++||..+ ...+.++.|.|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34567899999999999999999999999999999994 455 89999999987 6789998875 78899999999
Q ss_pred ccCCCc
Q psy16454 82 KRAVPR 87 (304)
Q Consensus 82 ~~~~~~ 87 (304)
..+.+.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 888754
No 88
>KOG0126|consensus
Probab=99.37 E-value=7.2e-14 Score=109.40 Aligned_cols=80 Identities=28% Similarity=0.506 Sum_probs=73.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
-.++.-|||++||+.+||.||..+|++||+|++|.+++|+.|++++||||+.|++..+-..|+.. ++..|.+|.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34556799999999999999999999999999999999999999999999999999988888865 89999999999975
Q ss_pred c
Q psy16454 175 A 175 (304)
Q Consensus 175 ~ 175 (304)
.
T Consensus 112 v 112 (219)
T KOG0126|consen 112 V 112 (219)
T ss_pred c
Confidence 5
No 89
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.37 E-value=5.1e-12 Score=109.90 Aligned_cols=79 Identities=44% Similarity=0.733 Sum_probs=74.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccc
Q psy16454 99 VKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALS 177 (304)
Q Consensus 99 ~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~ 177 (304)
..+|||+|||+.+++++|+++|.+|+.|..|.+..++.++++++||||+|.+.++|..|++. +...|.+++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999998999999999999999999999988 66999999999999653
No 90
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.36 E-value=6.6e-12 Score=86.44 Aligned_cols=73 Identities=44% Similarity=0.745 Sum_probs=65.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 101 ~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
+|+|.+||+++++++|+++|+.++.|..+.+..+..+ .++++|||+|.+.++|..|++. +...+++++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987655 6789999999999999999987 66669999998863
No 91
>KOG0131|consensus
Probab=99.36 E-value=1e-12 Score=103.15 Aligned_cols=79 Identities=30% Similarity=0.468 Sum_probs=74.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeecc
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKAL 176 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~ 176 (304)
+..+|||+||+..++++.|.++|-+.++|+++.|++|+.++..+|||||||.++|+|+-|++- +...+-+++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 446999999999999999999999999999999999999999999999999999999999976 8888999999998886
No 92
>KOG0120|consensus
Probab=99.36 E-value=2.4e-12 Score=117.85 Aligned_cols=168 Identities=26% Similarity=0.449 Sum_probs=134.6
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhC-----------Cc-eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAW-----------GD-VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHT 73 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~-----------G~-v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~ 73 (304)
...+.++|.++|+.++++++..+|..- |+ +..|.+-. .+.+|||+|.+.++|..|+......
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~~~~~~~ 246 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAMALDGII 246 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhhcccchh
Confidence 456779999999999999999999765 22 44444433 3459999999999999999987777
Q ss_pred cCCeeeccccCCCccc-----------------cCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCC
Q psy16454 74 IDSKVVEPKRAVPRTE-----------------INRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKE 136 (304)
Q Consensus 74 ~~g~~i~~~~~~~~~~-----------------~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~ 136 (304)
+.+..+.+........ ...+.......+++|++||..+++++++++.+.|+.+....++.+..
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~ 326 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA 326 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc
Confidence 7776666544332111 11122234556899999999999999999999999999999999999
Q ss_pred CCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccchH
Q psy16454 137 TGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALSKE 179 (304)
Q Consensus 137 ~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~~ 179 (304)
++-+++|||.+|.++.....|++. ++..+.++++.|..+....
T Consensus 327 ~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 327 TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred cccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 999999999999999999999987 8888999999998775443
No 93
>smart00360 RRM RNA recognition motif.
Probab=99.36 E-value=4.9e-12 Score=86.27 Aligned_cols=69 Identities=26% Similarity=0.505 Sum_probs=61.6
Q ss_pred EcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCC-CCcCCeeecc
Q psy16454 13 IGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARP-HTIDSKVVEP 81 (304)
Q Consensus 13 V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~-~~~~g~~i~~ 81 (304)
|.|||.++++++|+++|++||+|..+.++.++.+.+++++|||+|.+.++|++|++.++ ..+.++.+.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 57999999999999999999999999999988788999999999999999999998764 6666666654
No 94
>KOG0117|consensus
Probab=99.35 E-value=7.8e-12 Score=110.57 Aligned_cols=79 Identities=23% Similarity=0.444 Sum_probs=70.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCccc-CCeeEEEee
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLV-KGKKVDVKK 174 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~-~g~~i~v~~ 174 (304)
..-+.|||+.||.++.|++|.-+|++.|+|-+++++.|+.++.+||||||+|.+.++|++||+. |+++| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4557899999999999999999999999999999999999999999999999999999999977 66654 677766644
Q ss_pred c
Q psy16454 175 A 175 (304)
Q Consensus 175 ~ 175 (304)
+
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 3
No 95
>KOG0415|consensus
Probab=99.34 E-value=1.9e-12 Score=111.25 Aligned_cols=85 Identities=24% Similarity=0.470 Sum_probs=79.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHH-HhCCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC-LKGTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~~ 174 (304)
..+.+.|||-.|.+-|++++|.-+|+.||.|..|.|++|..|+.+-.||||+|++.+++++|. ++++..|+++.|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 445679999999999999999999999999999999999999999999999999999999997 5699999999999999
Q ss_pred ccchHH
Q psy16454 175 ALSKEE 180 (304)
Q Consensus 175 ~~~~~~ 180 (304)
+.+...
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 877665
No 96
>KOG4210|consensus
Probab=99.33 E-value=2.6e-12 Score=111.79 Aligned_cols=174 Identities=21% Similarity=0.262 Sum_probs=140.1
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCC-CcCCeeeccccCC
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPH-TIDSKVVEPKRAV 85 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~-~~~g~~i~~~~~~ 85 (304)
..+++|++++.+++.+.++..++...+.+..+.+......-.+++++.|.|+..+.+..||..... .+....+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 588999999999999999999999999988888877667788999999999999999999998653 4444444333322
Q ss_pred Cccc----cCCCCCCCCcceEE-EcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh
Q psy16454 86 PRTE----INRPEAGATVKKLF-VGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 86 ~~~~----~~~~~~~~~~~~l~-v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
.... ...........+++ |.+|+..+++++|+.+|..++.|..++++.+..++.+++|++|+|.+..++..|+..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 2221 11112223334555 999999999999999999999999999999999999999999999999999998877
Q ss_pred CCcccCCeeEEEeeccchHH
Q psy16454 161 GTHLVKGKKVDVKKALSKEE 180 (304)
Q Consensus 161 ~~~~~~g~~i~v~~~~~~~~ 180 (304)
..+.+.++++.|.+..++..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 247 QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred ccCcccCcccccccCCCCcc
Confidence 77788999999988766643
No 97
>KOG0116|consensus
Probab=99.32 E-value=1.2e-11 Score=111.99 Aligned_cols=79 Identities=29% Similarity=0.475 Sum_probs=70.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeeccch
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSK 178 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~~~ 178 (304)
.+|||.|||.++++++|+++|.+||.|+...|......++...|+||+|++.++++.||+++...+++++|.|+..++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 4599999999999999999999999999988877654455558999999999999999999999999999999887654
No 98
>KOG0126|consensus
Probab=99.32 E-value=1.6e-13 Score=107.48 Aligned_cols=80 Identities=24% Similarity=0.455 Sum_probs=71.6
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRA 84 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~ 84 (304)
+++--|||++||+++||.+|.-+|++||+|++|.+++|+.|++|+||||+.|++..+...|+..+ ...|.++.|.|.-.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 46678999999999999999999999999999999999999999999999999998888887664 77888998887544
Q ss_pred C
Q psy16454 85 V 85 (304)
Q Consensus 85 ~ 85 (304)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 3
No 99
>KOG4205|consensus
Probab=99.31 E-value=1.7e-12 Score=113.33 Aligned_cols=87 Identities=43% Similarity=0.730 Sum_probs=81.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeeccc
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALS 177 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~~ 177 (304)
+..+|||++|+|++++|.|++.|.+|++|.+|.+++|+.++++++|+||+|++++.+.++|....|.|+++.|+++.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHhhh
Q psy16454 178 KEEMAKL 184 (304)
Q Consensus 178 ~~~~~~~ 184 (304)
+.+..+.
T Consensus 85 r~~~~~~ 91 (311)
T KOG4205|consen 85 REDQTKV 91 (311)
T ss_pred ccccccc
Confidence 8865443
No 100
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.29 E-value=2.7e-11 Score=83.32 Aligned_cols=72 Identities=26% Similarity=0.512 Sum_probs=63.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCC-cCCeeeccc
Q psy16454 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHT-IDSKVVEPK 82 (304)
Q Consensus 10 ~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~-~~g~~i~~~ 82 (304)
+|+|.+||.++++++|+++|+.+++|..+.++.++.+ ..+++|||+|.+.++|+.|++.+... +.++.+.+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 5899999999999999999999999999999988665 67899999999999999999886444 677766553
No 101
>KOG0108|consensus
Probab=99.28 E-value=9.7e-12 Score=113.21 Aligned_cols=84 Identities=32% Similarity=0.559 Sum_probs=78.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccch
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALSK 178 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~ 178 (304)
..|||+|||++++||+|.++|+..+.|.+++++.|++|++++||+|++|.+.++|+.|++. +..++.+++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 7899999999999999999999999999999999999999999999999999999999987 889999999999999776
Q ss_pred HHHhh
Q psy16454 179 EEMAK 183 (304)
Q Consensus 179 ~~~~~ 183 (304)
....+
T Consensus 99 ~~~~~ 103 (435)
T KOG0108|consen 99 KNAER 103 (435)
T ss_pred chhHH
Confidence 65443
No 102
>KOG0130|consensus
Probab=99.28 E-value=5.1e-12 Score=94.32 Aligned_cols=83 Identities=14% Similarity=0.286 Sum_probs=75.5
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCC-CCcCCeeeccccC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARP-HTIDSKVVEPKRA 84 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~-~~~~g~~i~~~~~ 84 (304)
-.-..|||.++-..+||++|.+.|..||+|++|.+-.|+.|+-.||||.|+|++.++|++|+..++ ..+.+..+.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 345679999999999999999999999999999999999999999999999999999999999864 8899999999887
Q ss_pred CCcc
Q psy16454 85 VPRT 88 (304)
Q Consensus 85 ~~~~ 88 (304)
..+.
T Consensus 150 Fv~g 153 (170)
T KOG0130|consen 150 FVKG 153 (170)
T ss_pred EecC
Confidence 6443
No 103
>KOG0111|consensus
Probab=99.26 E-value=6.6e-12 Score=101.31 Aligned_cols=103 Identities=22% Similarity=0.363 Sum_probs=88.5
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRA 84 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~ 84 (304)
...++|||++|..++||.-|...|-+||.|.+|.+..|..+.+.|+|+||+|+..|+|.+|+..+ ..++.++.|.|..+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 46789999999999999999999999999999999999999999999999999999999999875 67899999999999
Q ss_pred CCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHH
Q psy16454 85 VPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYF 120 (304)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F 120 (304)
.|........ -|-|.+++.|+.+-
T Consensus 88 kP~kikegsq------------kPvWADDdWlkk~~ 111 (298)
T KOG0111|consen 88 KPEKIKEGSQ------------KPVWADDDWLKKQQ 111 (298)
T ss_pred CCccccCCCC------------CCcccCcHHHHHhc
Confidence 8765443322 35677777666544
No 104
>KOG1365|consensus
Probab=99.24 E-value=2.8e-11 Score=105.09 Aligned_cols=173 Identities=16% Similarity=0.174 Sum_probs=131.3
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAV 85 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~ 85 (304)
++...|..+.||+..++.+|..+|.-.-.+.--+.+.....++..+.+.|.|.++|.-+.|++.+.+.+..+.+++..+.
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKAT 137 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccC
Confidence 34455677899999999999999987754433333443345677789999999999999999999999999999988776
Q ss_pred Cccc----------cCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcC----CceeEEEEeeeCCCCCccceEEEEeCCh
Q psy16454 86 PRTE----------INRPEAGATVKKLFVGSLRDDITEEDLKEYFGQF----GEVTSVALVTEKETGKKRGFGFVEYNDY 151 (304)
Q Consensus 86 ~~~~----------~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~----G~v~~v~i~~~~~~~~~~G~afV~f~~~ 151 (304)
..+- ..........-.|.+.+||+++++.++.++|.+- +.++.|-+++. .+++..|-|||.|..+
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACE 216 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCH
Confidence 5421 1111222334468889999999999999999642 23344544443 4678999999999999
Q ss_pred hHHHHHHHhCCcccCCeeEEEeeccchH
Q psy16454 152 DPVDKACLKGTHLVKGKKVDVKKALSKE 179 (304)
Q Consensus 152 ~~a~~A~~~~~~~~~g~~i~v~~~~~~~ 179 (304)
++|+.||.++...|.-|.|++..+...+
T Consensus 217 e~aq~aL~khrq~iGqRYIElFRSTaaE 244 (508)
T KOG1365|consen 217 EDAQFALRKHRQNIGQRYIELFRSTAAE 244 (508)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHH
Confidence 9999999999999998988886665443
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=99.23 E-value=4.8e-11 Score=82.07 Aligned_cols=60 Identities=22% Similarity=0.471 Sum_probs=53.5
Q ss_pred HHHHHHHHh----cCCceeEEE-EeeeCCC--CCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 113 EEDLKEYFG----QFGEVTSVA-LVTEKET--GKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 113 ~~~l~~~F~----~~G~v~~v~-i~~~~~~--~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
+++|+++|+ +||.|.+|. |+.++.+ ++++||+||+|++.++|++|+.. ++..+.+++|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678888888 999999995 7776666 88999999999999999999986 999999999976
No 106
>KOG0128|consensus
Probab=99.23 E-value=3.6e-13 Score=127.33 Aligned_cols=149 Identities=23% Similarity=0.289 Sum_probs=128.0
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAV 85 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~ 85 (304)
.+..++||.||+..+.+.+|.+.|..++.+..+.+....+.++.+|+|||+|..++++.+|+......+.+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 45678999999999999999999999998888777767788999999999999999999999876555444
Q ss_pred CccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcc
Q psy16454 86 PRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHL 164 (304)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~ 164 (304)
...|+|.|+|+..|.++|+.++..++.+.++.++..+ .++++|.|+|.|.++.++.+++.. +...
T Consensus 736 -------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~ 801 (881)
T KOG0128|consen 736 -------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAG 801 (881)
T ss_pred -------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhh
Confidence 2478999999999999999999999999999987765 689999999999999999999866 6666
Q ss_pred cCCeeEEEeeccc
Q psy16454 165 VKGKKVDVKKALS 177 (304)
Q Consensus 165 ~~g~~i~v~~~~~ 177 (304)
+....++|....+
T Consensus 802 ~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 802 KRENNGEVQVSNP 814 (881)
T ss_pred hhhcCccccccCC
Confidence 6666666666544
No 107
>KOG0108|consensus
Probab=99.22 E-value=2.6e-11 Score=110.47 Aligned_cols=81 Identities=25% Similarity=0.436 Sum_probs=76.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccCCCc
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRAVPR 87 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~~~~ 87 (304)
+.|||+|||+++++++|.++|+..|+|.+++++.|+.|+++|||+|++|.+.++|+.|++.+ ..++.++.+.+.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999987 58999999999887754
Q ss_pred cc
Q psy16454 88 TE 89 (304)
Q Consensus 88 ~~ 89 (304)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 108
>KOG4454|consensus
Probab=99.18 E-value=5.8e-12 Score=101.62 Aligned_cols=136 Identities=26% Similarity=0.367 Sum_probs=108.5
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~ 81 (304)
..++..+||||.||...+||+-|.|+|-+.|+|..|.|..++.. +.| ||||+|+++..+.-|+++. ...+....+.+
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~-~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQ-EQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccC-CCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 35678899999999999999999999999999999999887554 445 9999999999999999875 33444444333
Q ss_pred ccCCCccccCCCCCCCCcceEEEcC----CCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHH
Q psy16454 82 KRAVPRTEINRPEAGATVKKLFVGS----LRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKA 157 (304)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~v~~----l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A 157 (304)
+++.++ |...++++.+.+.|+..+++..+++.++.+ ++++-+.|+++....+.-.|
T Consensus 82 -------------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 82 -------------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred -------------------ccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHH
Confidence 233333 566789999999999999999999988865 77888999998776666666
Q ss_pred HHh
Q psy16454 158 CLK 160 (304)
Q Consensus 158 ~~~ 160 (304)
+..
T Consensus 142 ~~~ 144 (267)
T KOG4454|consen 142 LDL 144 (267)
T ss_pred hhh
Confidence 644
No 109
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.18 E-value=1.2e-10 Score=76.29 Aligned_cols=55 Identities=33% Similarity=0.607 Sum_probs=48.7
Q ss_pred HHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeec
Q psy16454 116 LKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 116 l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
|+++|++||+|+++.+..+. +++|||+|.+.++|++|++. ++..+.+++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997654 57999999999999999986 999999999999875
No 110
>KOG0226|consensus
Probab=99.16 E-value=3.1e-11 Score=99.60 Aligned_cols=168 Identities=19% Similarity=0.335 Sum_probs=126.2
Q ss_pred EEEcCCCCCCCHHH-H--HHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccCCC
Q psy16454 11 LFIGGLDYRTSSET-L--KSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRAVP 86 (304)
Q Consensus 11 v~V~nLp~~~t~~~-l--~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~~~ 86 (304)
+++.++-.++..+- | ...|+.+=.....+++++. ...-+.++|+.|.......++.... .+.+...++.+.....
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 44555544544443 2 4555555445555555543 3455679999998776666655443 4445555566666677
Q ss_pred ccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCccc
Q psy16454 87 RTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLV 165 (304)
Q Consensus 87 ~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~ 165 (304)
.++....+......+||.+.|..+++++.|...|.+|-.....++++|+.|++++||.||.|.+++++..|+.. ++..+
T Consensus 178 wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 178 WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred cCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence 77776667777778999999999999999999999998888899999999999999999999999999999955 99999
Q ss_pred CCeeEEEeeccchH
Q psy16454 166 KGKKVDVKKALSKE 179 (304)
Q Consensus 166 ~g~~i~v~~~~~~~ 179 (304)
+.++|.+.....++
T Consensus 258 gsrpiklRkS~wke 271 (290)
T KOG0226|consen 258 GSRPIKLRKSEWKE 271 (290)
T ss_pred ccchhHhhhhhHHh
Confidence 99999887665544
No 111
>KOG0109|consensus
Probab=99.13 E-value=7.1e-11 Score=99.25 Aligned_cols=71 Identities=31% Similarity=0.569 Sum_probs=66.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccch
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALSK 178 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~ 178 (304)
.+|||+|||..+++.+|+.+|++||+|.+|+|+++ |+||..++...++.||.. +.-+|++..|.|+.++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999975 899999999999999984 888999999999998877
No 112
>KOG0132|consensus
Probab=99.13 E-value=8.2e-11 Score=110.48 Aligned_cols=110 Identities=18% Similarity=0.272 Sum_probs=86.7
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRA 84 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~ 84 (304)
--++||||+.|+.+++|.+|.++|+.||+|++|.++. ++++|||+....++|++||+++ +..+..+.|++.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 3578999999999999999999999999999999987 4679999999999999999886 77889999999998
Q ss_pred CCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhc
Q psy16454 85 VPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQ 122 (304)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~ 122 (304)
..+-...+-... ....|=|.-|||+.-.++|+.+++.
T Consensus 493 ~g~G~kse~k~~-wD~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 493 VGKGPKSEYKDY-WDVELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred ccCCcchhhhhh-hhcccCeeEeehHhcCHHHHHhhhh
Confidence 866443311111 1123456667887555557777754
No 113
>KOG0153|consensus
Probab=99.08 E-value=4.2e-10 Score=96.84 Aligned_cols=81 Identities=27% Similarity=0.599 Sum_probs=72.3
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh--CCcccCCe
Q psy16454 91 NRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK--GTHLVKGK 168 (304)
Q Consensus 91 ~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~--~~~~~~g~ 168 (304)
.++.+....++|||++|...++|.+|+++|.+||+|..|.++..+ ++|||+|.+.++|+.|.++ +...|+++
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecce
Confidence 445566777899999999999999999999999999999998653 4999999999999999987 76779999
Q ss_pred eEEEeeccc
Q psy16454 169 KVDVKKALS 177 (304)
Q Consensus 169 ~i~v~~~~~ 177 (304)
+|.|.|..+
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999987
No 114
>smart00361 RRM_1 RNA recognition motif.
Probab=99.05 E-value=8.5e-10 Score=75.82 Aligned_cols=60 Identities=20% Similarity=0.329 Sum_probs=50.5
Q ss_pred HHHHHHHhh----hCCceeEEE-EEeCCCC--CCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeecc
Q psy16454 22 SETLKSHFE----AWGDVVDVV-VMKDPQT--KKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEP 81 (304)
Q Consensus 22 ~~~l~~~F~----~~G~v~~v~-i~~~~~~--~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~ 81 (304)
+++|+++|+ +||.|.+|. |+.++.+ +.+++++||+|.++++|++|++.+ +..+.++.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999996 6666666 889999999999999999999874 66777777754
No 115
>KOG1456|consensus
Probab=99.01 E-value=2.1e-08 Score=87.29 Aligned_cols=151 Identities=19% Similarity=0.165 Sum_probs=113.7
Q ss_pred CccCeEEEcCCCCC-CCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeecccc
Q psy16454 6 EHLRKLFIGGLDYR-TSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKR 83 (304)
Q Consensus 6 ~~~~~v~V~nLp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~ 83 (304)
.+.+.++|-+|... ++.+.|.++|-.||.|+.|++|+.+. +.|.||+.|..++++|+..+ +..+.+..|.+..
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 46678999999855 78899999999999999999998743 68999999999999999875 4555666666544
Q ss_pred CCCccc-------------------------------cCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEE
Q psy16454 84 AVPRTE-------------------------------INRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFG-EVTSVAL 131 (304)
Q Consensus 84 ~~~~~~-------------------------------~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G-~v~~v~i 131 (304)
++.... ..+.....+++.|..-|.|..+|||.|.++|.... ..++|+|
T Consensus 360 SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkv 439 (494)
T KOG1456|consen 360 SKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKV 439 (494)
T ss_pred ccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEe
Confidence 332110 01122345677899999999999999999997654 3456777
Q ss_pred eeeCCCCCccceEEEEeCChhHHHHHHHhCCc
Q psy16454 132 VTEKETGKKRGFGFVEYNDYDPVDKACLKGTH 163 (304)
Q Consensus 132 ~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~ 163 (304)
+.-+ +-++ --+.+||++.++|..||.+.+|
T Consensus 440 Fp~k-serS-ssGllEfe~~s~Aveal~~~NH 469 (494)
T KOG1456|consen 440 FPLK-SERS-SSGLLEFENKSDAVEALMKLNH 469 (494)
T ss_pred eccc-cccc-ccceeeeehHHHHHHHHHHhcc
Confidence 6554 2222 3589999999999999987433
No 116
>KOG4307|consensus
Probab=98.99 E-value=1.7e-09 Score=100.68 Aligned_cols=171 Identities=12% Similarity=0.046 Sum_probs=128.1
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAV 85 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~ 85 (304)
.+.+.+-+..+++++++.+++++|... .|.++.|..+.....-.|-++|+|..+.++++|++.+...+-.+.+.+....
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 455666678999999999999999765 4666676666554445789999999999999999988777777777665433
Q ss_pred Ccccc---------------------------------CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy16454 86 PRTEI---------------------------------NRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALV 132 (304)
Q Consensus 86 ~~~~~---------------------------------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~ 132 (304)
..... ..+........|||..||..+++.++.++|...-.|++...+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 21110 001122344689999999999999999999988788874444
Q ss_pred eeCCCCCccceEEEEeCChhHHHHHHH-hCCcccCCeeEEEeeccc
Q psy16454 133 TEKETGKKRGFGFVEYNDYDPVDKACL-KGTHLVKGKKVDVKKALS 177 (304)
Q Consensus 133 ~~~~~~~~~G~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~~~~ 177 (304)
....+++.++.|||+|..++++.+|+. +..+.+..+.|+|.....
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 445678889999999999777777765 488888888899966543
No 117
>KOG0415|consensus
Probab=98.98 E-value=6.8e-10 Score=95.74 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=75.4
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~ 82 (304)
...+.+.|||--|.+-+|+++|.-+|+.||+|.+|.+++|..|+.+..||||+|++.+++++|.-.+ +..|+.+.|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 3457789999999999999999999999999999999999999999999999999999999997664 777899998887
Q ss_pred cCCCc
Q psy16454 83 RAVPR 87 (304)
Q Consensus 83 ~~~~~ 87 (304)
.+++.
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 76543
No 118
>KOG0146|consensus
Probab=98.96 E-value=1.2e-09 Score=90.81 Aligned_cols=86 Identities=24% Similarity=0.328 Sum_probs=74.8
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~ 82 (304)
+-.+-|+|||-.||.+..+.||...|-.||.|++.++..|+.|..||.|+||.|.++.+|++||+++ ...|.-+.++|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 4467899999999999999999999999999999999999999999999999999999999999985 455656666666
Q ss_pred cCCCccc
Q psy16454 83 RAVPRTE 89 (304)
Q Consensus 83 ~~~~~~~ 89 (304)
.+.++..
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 6655543
No 119
>KOG4206|consensus
Probab=98.95 E-value=2.6e-09 Score=87.26 Aligned_cols=81 Identities=25% Similarity=0.454 Sum_probs=72.6
Q ss_pred CcceEEEcCCCCCCCHHHHHH----HHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 98 TVKKLFVGSLRDDITEEDLKE----YFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~----~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
+..+|||.||+..+..++|+. +|++||.|.+|...+ +.+.+|.|||.|.+.+.|..|+.. ++.-+-|++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 334999999999999999988 999999999998864 568999999999999999999977 899999999999
Q ss_pred eeccchHHH
Q psy16454 173 KKALSKEEM 181 (304)
Q Consensus 173 ~~~~~~~~~ 181 (304)
.+|.++...
T Consensus 85 qyA~s~sdi 93 (221)
T KOG4206|consen 85 QYAKSDSDI 93 (221)
T ss_pred ecccCccch
Confidence 999877654
No 120
>KOG0153|consensus
Probab=98.94 E-value=2.6e-09 Score=92.06 Aligned_cols=77 Identities=21% Similarity=0.488 Sum_probs=69.0
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC--CCCcCCeeecc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR--PHTIDSKVVEP 81 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~--~~~~~g~~i~~ 81 (304)
++...++|||++|-..++|.+|+++|.+||+|.+|.++..+ ++|||+|.+.++|+.|.+.. ...|++..|.+
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 45678899999999999999999999999999999998864 49999999999999998874 56679999999
Q ss_pred ccCCC
Q psy16454 82 KRAVP 86 (304)
Q Consensus 82 ~~~~~ 86 (304)
.|..+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99887
No 121
>KOG0112|consensus
Probab=98.93 E-value=9.5e-10 Score=105.04 Aligned_cols=159 Identities=17% Similarity=0.285 Sum_probs=118.7
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~ 82 (304)
+...+++||++||+..+++.+|+..|..+|.|.+|.|..-+. +.-.-|+||.|.+.+.+-.|+... ...|-.-.+.+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 456789999999999999999999999999999999876532 333459999999988887776554 222222222222
Q ss_pred cCCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-C
Q psy16454 83 RAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-G 161 (304)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~ 161 (304)
.... .....+.|+|..|..|+....|...|..||.|..|.+-.. .-||+|.|++...+++|+.. .
T Consensus 447 lG~~--------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~r 512 (975)
T KOG0112|consen 447 LGQP--------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMR 512 (975)
T ss_pred cccc--------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHh
Confidence 2211 3345678999999999999999999999999998877432 23999999999999999854 4
Q ss_pred Cccc--CCeeEEEeeccc
Q psy16454 162 THLV--KGKKVDVKKALS 177 (304)
Q Consensus 162 ~~~~--~g~~i~v~~~~~ 177 (304)
...| ..+.+.|.++..
T Consensus 513 gap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 513 GAPLGGPPRRLRVDLASP 530 (975)
T ss_pred cCcCCCCCcccccccccC
Confidence 4443 345577776643
No 122
>KOG4208|consensus
Probab=98.93 E-value=4.5e-09 Score=84.55 Aligned_cols=84 Identities=23% Similarity=0.400 Sum_probs=74.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcC-CceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQF-GEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~-G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
.......++|..+|.-+.+.+|..+|.++ |.|..+++.+++.|+.+|+||||+|++++.|+-|.+. |+..|.++.|.+
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 33455679999999999999999999998 7888888889999999999999999999999999875 999999999999
Q ss_pred eeccch
Q psy16454 173 KKALSK 178 (304)
Q Consensus 173 ~~~~~~ 178 (304)
....+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 877665
No 123
>KOG0132|consensus
Probab=98.93 E-value=2.9e-09 Score=100.30 Aligned_cols=78 Identities=29% Similarity=0.528 Sum_probs=70.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
...+++|||+.|+.+++|+||+++|++||+|++|.++. +++||||+....++|++|+.+ .+..+..+.|+|.|
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 34678999999999999999999999999999999874 467999999999999999976 88889999999999
Q ss_pred ccchH
Q psy16454 175 ALSKE 179 (304)
Q Consensus 175 ~~~~~ 179 (304)
+..+-
T Consensus 492 a~g~G 496 (894)
T KOG0132|consen 492 AVGKG 496 (894)
T ss_pred eccCC
Confidence 96543
No 124
>KOG4209|consensus
Probab=98.92 E-value=1.6e-09 Score=91.40 Aligned_cols=85 Identities=20% Similarity=0.388 Sum_probs=79.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEe
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVK 173 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 173 (304)
....+.+.+||+|+.+.++.++|+.+|+.|+.|..|.|+.|+.++++|+|+||+|.+.+.+++|++++...|.++.++|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 44566789999999999999999999999999999999999999899999999999999999999999999999999998
Q ss_pred eccch
Q psy16454 174 KALSK 178 (304)
Q Consensus 174 ~~~~~ 178 (304)
+.+.+
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 88776
No 125
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.90 E-value=4.5e-09 Score=68.80 Aligned_cols=54 Identities=20% Similarity=0.439 Sum_probs=46.3
Q ss_pred HHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 25 LKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 25 l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
|.++|++||+|++|.+..+. +++|||+|.+.++|++|++. +...+.++.|.+.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 68999999999999998764 57999999999999999985 57788999888765
No 126
>KOG0116|consensus
Probab=98.87 E-value=4.5e-09 Score=95.42 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=68.8
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCCC
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAVP 86 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~~ 86 (304)
...+|||.|||+++|+++|+++|.+||+|+...|.......+...|+||+|++.++++.|+++.+..+.++.+.|+...+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 34559999999999999999999999999988887644233444899999999999999999998899999988877664
Q ss_pred c
Q psy16454 87 R 87 (304)
Q Consensus 87 ~ 87 (304)
.
T Consensus 367 ~ 367 (419)
T KOG0116|consen 367 G 367 (419)
T ss_pred c
Confidence 3
No 127
>KOG4208|consensus
Probab=98.85 E-value=9.8e-09 Score=82.63 Aligned_cols=81 Identities=15% Similarity=0.263 Sum_probs=67.9
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhC-CceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeecccc
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAW-GDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKR 83 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~ 83 (304)
.....+||..||.-+.+.+|..+|.++ |.|..+++.+++.|+.||+||||+|++++.|+-|.+.+ +-.+..+.+.++.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 456679999999999999999999999 67888888899999999999999999999999998875 4445566666555
Q ss_pred CCC
Q psy16454 84 AVP 86 (304)
Q Consensus 84 ~~~ 86 (304)
..+
T Consensus 127 mpp 129 (214)
T KOG4208|consen 127 MPP 129 (214)
T ss_pred eCc
Confidence 443
No 128
>KOG0533|consensus
Probab=98.84 E-value=1.3e-08 Score=85.80 Aligned_cols=85 Identities=26% Similarity=0.416 Sum_probs=75.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
.....+|+|.|||+.++++||+++|+.|+.++.+.|..++ ++.+.|.|-|.|+..++|++|++. ++..++++++++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3344789999999999999999999999999888888875 788999999999999999999987 88999999999988
Q ss_pred ccchHHH
Q psy16454 175 ALSKEEM 181 (304)
Q Consensus 175 ~~~~~~~ 181 (304)
+.+....
T Consensus 159 i~~~~~~ 165 (243)
T KOG0533|consen 159 ISSPSQS 165 (243)
T ss_pred ecCcccc
Confidence 7666544
No 129
>KOG4661|consensus
Probab=98.75 E-value=2.1e-08 Score=91.52 Aligned_cols=81 Identities=25% Similarity=0.420 Sum_probs=73.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeecc
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKAL 176 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~ 176 (304)
..+.|+|++|+..|...+|+.+|++||.|+-.+|+.+..+.-.+.|+||++.+.++|.+||+. +..+|.++-|.|+.+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 346799999999999999999999999999999999988888899999999999999999987 8888999999998874
Q ss_pred ch
Q psy16454 177 SK 178 (304)
Q Consensus 177 ~~ 178 (304)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 43
No 130
>KOG4676|consensus
Probab=98.73 E-value=4.2e-09 Score=92.01 Aligned_cols=154 Identities=11% Similarity=0.095 Sum_probs=113.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCC---CCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccC
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQT---KKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRA 84 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~---~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~ 84 (304)
...|.|.||.+++|.+++..||..+|.|.++.|+.+..+ ....-.|||.|.+...+..|..+.++.+-+..+.|.+.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 458999999999999999999999999999999885432 23456899999999999999887777666666555432
Q ss_pred CCccccCC--------------------------CC------------------------CCCCcceEEEcCCCCCCCHH
Q psy16454 85 VPRTEINR--------------------------PE------------------------AGATVKKLFVGSLRDDITEE 114 (304)
Q Consensus 85 ~~~~~~~~--------------------------~~------------------------~~~~~~~l~v~~l~~~~~~~ 114 (304)
........ +. ...-..+|+|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 21111000 00 01112468999999999999
Q ss_pred HHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCccc
Q psy16454 115 DLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLV 165 (304)
Q Consensus 115 ~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~ 165 (304)
++.+.|+.+|.|....+.... ..-+|.|+|........|+.+++..+
T Consensus 167 e~~e~f~r~Gev~ya~~ask~----~s~~c~~sf~~qts~~halr~~gre~ 213 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKS----RSSSCSHSFRKQTSSKHALRSHGRER 213 (479)
T ss_pred hhhhhhhhcchhhhhhhhccC----CCcchhhhHhhhhhHHHHHHhcchhh
Confidence 999999999998877665432 23478899988888888887766554
No 131
>KOG4661|consensus
Probab=98.72 E-value=2.6e-08 Score=90.99 Aligned_cols=80 Identities=23% Similarity=0.413 Sum_probs=72.6
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccCC
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRAV 85 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~~ 85 (304)
-.++|||.+|+..+-..+|+++|++||.|+-.+++++..+.-.++|+||++.+.++|.+||+.+ .+.+.++.|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 4578999999999999999999999999999999998888888999999999999999999986 567899999987766
Q ss_pred C
Q psy16454 86 P 86 (304)
Q Consensus 86 ~ 86 (304)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 4
No 132
>KOG1548|consensus
Probab=98.71 E-value=1.5e-07 Score=81.30 Aligned_cols=79 Identities=25% Similarity=0.383 Sum_probs=70.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeE--------EEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCC
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTS--------VALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKG 167 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~--------v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g 167 (304)
...+.|||++||.++|.+++.++|++||.|.. |+++++.. ++.||-|.+.|-..|+++.|++. +...+.+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 34467999999999999999999999998754 78888764 89999999999999999999987 8888999
Q ss_pred eeEEEeecc
Q psy16454 168 KKVDVKKAL 176 (304)
Q Consensus 168 ~~i~v~~~~ 176 (304)
+.|+|+.|.
T Consensus 211 ~~~rVerAk 219 (382)
T KOG1548|consen 211 KKLRVERAK 219 (382)
T ss_pred cEEEEehhh
Confidence 999998874
No 133
>KOG4209|consensus
Probab=98.70 E-value=1.9e-08 Score=84.96 Aligned_cols=84 Identities=21% Similarity=0.403 Sum_probs=76.6
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeecccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKR 83 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~ 83 (304)
...+.+.|||+|+.+.+|.++|+.+|+.|+.|..+.|..++.++.+|+|+||+|.+.+.+++++++....+.++.+.+.+
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 34578899999999999999999999999999999999999998999999999999999999999888899999888877
Q ss_pred CCCc
Q psy16454 84 AVPR 87 (304)
Q Consensus 84 ~~~~ 87 (304)
....
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6543
No 134
>KOG1995|consensus
Probab=98.69 E-value=7.5e-08 Score=83.81 Aligned_cols=85 Identities=25% Similarity=0.331 Sum_probs=76.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCcee--------EEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccC
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVT--------SVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVK 166 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~--------~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~ 166 (304)
.....+|||..||..+++++|.++|.+++.|. .|+|.++++|+++|+-|.|+|+++.+|+.||+. +...+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45667899999999999999999999998875 378899999999999999999999999999988 888899
Q ss_pred CeeEEEeeccchHH
Q psy16454 167 GKKVDVKKALSKEE 180 (304)
Q Consensus 167 g~~i~v~~~~~~~~ 180 (304)
+.+|+|..+..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999988876653
No 135
>KOG4307|consensus
Probab=98.66 E-value=1.4e-07 Score=88.13 Aligned_cols=75 Identities=16% Similarity=0.336 Sum_probs=64.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
+.|.+.|+|++++-+||.++|..|-.+-.-.+++..+.++..|-|.|.|++.++|.+|.+. ++..|..++|.|..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4799999999999999999999997655544455567889999999999999999999876 88889999988864
No 136
>KOG0533|consensus
Probab=98.58 E-value=2.2e-07 Score=78.32 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=68.6
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~ 83 (304)
+....+|+|.|||+.|++++|+++|++|++++.+.+-.+ .++.+.+.|-|.|+..++|++|++.. ...++++.+.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 445578999999999999999999999998888877776 46889999999999999999999885 5667788776665
Q ss_pred CCC
Q psy16454 84 AVP 86 (304)
Q Consensus 84 ~~~ 86 (304)
..+
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 544
No 137
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.54 E-value=6.1e-07 Score=64.92 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=53.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhC--CceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAW--GDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR 70 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~ 70 (304)
+||+|+|||...|.++|.+++... +...-+-++.|-.+..+.|||||.|.++++|.+..+..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f 65 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAF 65 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHH
Confidence 689999999999999999998765 34566777788888899999999999999999988763
No 138
>KOG0128|consensus
Probab=98.50 E-value=7.7e-09 Score=98.55 Aligned_cols=156 Identities=18% Similarity=0.172 Sum_probs=120.6
Q ss_pred CeEEEcCCCCCCCHH-HHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCCCc
Q psy16454 9 RKLFIGGLDYRTSSE-TLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAVPR 87 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~-~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~~~ 87 (304)
+...+.++.+...+. .++..|..++.|+.|.+......-....+.+++++.+.+++.|.......+..+.+.+..+.++
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~ 651 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADAE 651 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCch
Confidence 456677776665555 6778899999999999887333333444899999999999999887777777777777666665
Q ss_pred cccCCCCCC----CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCc
Q psy16454 88 TEINRPEAG----ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTH 163 (304)
Q Consensus 88 ~~~~~~~~~----~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~ 163 (304)
+........ ....++||+||+..+.+++|...|..++.+..+.|.....+++.+|.|+|+|..++++.+||+.+..
T Consensus 652 ~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~ 731 (881)
T KOG0128|consen 652 EKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDS 731 (881)
T ss_pred hhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhh
Confidence 543332222 3445799999999999999999999999888877776667889999999999999999999987443
Q ss_pred c
Q psy16454 164 L 164 (304)
Q Consensus 164 ~ 164 (304)
.
T Consensus 732 ~ 732 (881)
T KOG0128|consen 732 C 732 (881)
T ss_pred h
Confidence 3
No 139
>KOG1457|consensus
Probab=98.49 E-value=1.5e-06 Score=70.92 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=70.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEe-eeCCCCCccceEEEEeCChhHHHHHHHh-CCcccC---Ce
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALV-TEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVK---GK 168 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~-~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~---g~ 168 (304)
.+....++|||++||.++..-+|..+|..|--.+.+.+- .++.....+-++||+|.+.++|++|+.+ ++..|+ ..
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 334567899999999999999999999998654444332 3333334567999999999999999977 776664 55
Q ss_pred eEEEeeccchHHHhhhcc
Q psy16454 169 KVDVKKALSKEEMAKLKT 186 (304)
Q Consensus 169 ~i~v~~~~~~~~~~~~~~ 186 (304)
.|+|+.+++..++.+++.
T Consensus 109 tLhiElAKSNtK~kr~k~ 126 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKG 126 (284)
T ss_pred eeEeeehhcCcccccCCC
Confidence 789999888776655543
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.49 E-value=1.5e-06 Score=62.87 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=64.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhc--CCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCccc----CCeeEEE
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQ--FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLV----KGKKVDV 172 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~--~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~----~g~~i~v 172 (304)
++|-|.|||...|.++|.+++.. .+....+-++.|-.+..+.|||||.|.++++|.+-.+. ++..+ ..+.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999999876 35667788888888888999999999999999987766 55544 3566788
Q ss_pred eeccch
Q psy16454 173 KKALSK 178 (304)
Q Consensus 173 ~~~~~~ 178 (304)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888654
No 141
>KOG4454|consensus
Probab=98.48 E-value=7.2e-08 Score=78.24 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=66.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeec
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
..++|||.|+...++|+.|.++|-+.|+|.+|.|+.++. ++.| ||||+|+++-++.-|++. ++..+.++.+.|+..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 447999999999999999999999999999999988764 4556 999999999999999976 888888888777544
No 142
>KOG4660|consensus
Probab=98.47 E-value=2.6e-07 Score=84.64 Aligned_cols=159 Identities=19% Similarity=0.199 Sum_probs=99.5
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~ 83 (304)
.-..++|+|-|||.++++++|..+|+.||+|..|+.... .++..||+|-|..+|++|++++ ..+|.++.+....
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 346789999999999999999999999999999665443 5689999999999999999885 4455555554211
Q ss_pred CCCccc----------------cCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEE
Q psy16454 84 AVPRTE----------------INRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVE 147 (304)
Q Consensus 84 ~~~~~~----------------~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~ 147 (304)
...... ...+........+++- |++..+...++..|+-++.+.. +. +...+-.-|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~~~~ 219 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQRFVE 219 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cc-----ccchhhhhhhh
Confidence 111000 0001111112233333 8777777666666666776554 21 22222257888
Q ss_pred eCChhHHHHHHHhCCcccCCeeEEEeec
Q psy16454 148 YNDYDPVDKACLKGTHLVKGKKVDVKKA 175 (304)
Q Consensus 148 f~~~~~a~~A~~~~~~~~~g~~i~v~~~ 175 (304)
|.+..++..++...+..+.+....+..+
T Consensus 220 ~~~~~s~a~~~~~~G~~~s~~~~v~t~S 247 (549)
T KOG4660|consen 220 FADNRSYAFSEPRGGFLISNSSGVITFS 247 (549)
T ss_pred hccccchhhcccCCceecCCCCceEEec
Confidence 8888887444433444455555444443
No 143
>KOG4660|consensus
Probab=98.40 E-value=5e-07 Score=82.82 Aligned_cols=73 Identities=27% Similarity=0.473 Sum_probs=62.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVD 171 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~ 171 (304)
+...+..+|+|-|||..+++++|+.+|+.||+|..|.. +-..++.+||+|-|..+|++|++. +...|.++.|.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 33556789999999999999999999999999998654 344568999999999999999977 77778887776
No 144
>KOG2193|consensus
Probab=98.38 E-value=8e-08 Score=84.94 Aligned_cols=153 Identities=19% Similarity=0.288 Sum_probs=118.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCc-eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC--CCCcCCeeeccccCC
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGD-VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR--PHTIDSKVVEPKRAV 85 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~--~~~~~g~~i~~~~~~ 85 (304)
++||++||.+.++..+|+.+|...-. ...-.++. .+|+||.+.+...|.+|++.+ ...+.++.+++....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 57999999999999999999976522 22222222 369999999999999999987 455678888877776
Q ss_pred CccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEee-eCCCCCccceEEEEeCChhHHHHHHHh-CCc
Q psy16454 86 PRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVT-EKETGKKRGFGFVEYNDYDPVDKACLK-GTH 163 (304)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~-~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~ 163 (304)
++... ++++-|.|+|....|+.|..++..|+.|+.|..+. +.+ .-..-|+|.+.+.+..||.+ +.+
T Consensus 75 ~kkqr--------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 75 PKKQR--------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred hHHHH--------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcch
Confidence 65543 34689999999999999999999999999887642 222 22345688889999999977 888
Q ss_pred ccCCeeEEEeeccchHH
Q psy16454 164 LVKGKKVDVKKALSKEE 180 (304)
Q Consensus 164 ~~~g~~i~v~~~~~~~~ 180 (304)
.+....+.|.+......
T Consensus 143 Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 143 QLENQHLKVGYIPDEQN 159 (584)
T ss_pred HhhhhhhhcccCchhhh
Confidence 89999898888765544
No 145
>KOG0106|consensus
Probab=98.36 E-value=3.8e-07 Score=75.30 Aligned_cols=71 Identities=27% Similarity=0.559 Sum_probs=62.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccch
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALSK 178 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~ 178 (304)
.+|||++||+.+.+.+|.++|..|+.|.+|.+.. +|+||+|++..+|+.|+.. +...|.+..+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4799999999999999999999999999988743 5899999999999999955 888888888888887654
No 146
>KOG0226|consensus
Probab=98.35 E-value=5.8e-07 Score=74.67 Aligned_cols=86 Identities=19% Similarity=0.337 Sum_probs=74.2
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~ 81 (304)
+.+++.-+||++.|..+++++.|...|.+|-.....++++++.|+++++|.||.|.+++++..|+..+ ...+..+.|.+
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 44567788999999999999999999999988889999999999999999999999999999999875 56667777776
Q ss_pred ccCCCcc
Q psy16454 82 KRAVPRT 88 (304)
Q Consensus 82 ~~~~~~~ 88 (304)
.....++
T Consensus 265 RkS~wke 271 (290)
T KOG0226|consen 265 RKSEWKE 271 (290)
T ss_pred hhhhHHh
Confidence 6555443
No 147
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.28 E-value=3.1e-06 Score=62.64 Aligned_cols=73 Identities=32% Similarity=0.444 Sum_probs=45.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh---C---CcccCCeeEEEee
Q psy16454 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK---G---THLVKGKKVDVKK 174 (304)
Q Consensus 101 ~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~---~---~~~~~g~~i~v~~ 174 (304)
.|+|.+++..++.++|+++|++|+.|..|.+..... .|+|.|.++++|++|+++ . ...+.+..+.++.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 588999999999999999999999999999876432 699999999999999865 3 4557787777766
Q ss_pred ccchH
Q psy16454 175 ALSKE 179 (304)
Q Consensus 175 ~~~~~ 179 (304)
..-.+
T Consensus 77 LeGee 81 (105)
T PF08777_consen 77 LEGEE 81 (105)
T ss_dssp --HHH
T ss_pred CCCHH
Confidence 54443
No 148
>KOG1995|consensus
Probab=98.13 E-value=3.6e-06 Score=73.50 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=71.6
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCcee--------EEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVV--------DVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTI 74 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~--------~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~ 74 (304)
+.....+|||-.||..+|+++|.++|.+++.|. .|+|.+++.|.+.|+-|.|+|++..+|++|+... ...+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 345677899999999999999999999999873 5788889999999999999999999999998875 5667
Q ss_pred CCeeeccccCCCcc
Q psy16454 75 DSKVVEPKRAVPRT 88 (304)
Q Consensus 75 ~g~~i~~~~~~~~~ 88 (304)
.+..|+|..+..++
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 77777666655444
No 149
>KOG0151|consensus
Probab=98.08 E-value=1.1e-05 Score=76.05 Aligned_cols=82 Identities=15% Similarity=0.248 Sum_probs=68.2
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCC---CCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeec
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQ---TKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVE 80 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~ 80 (304)
....++|||.||++.++++.|...|..||+|..++||.-+. ..+-+-++||.|-+..+|++|++.+ ...+....+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45678899999999999999999999999999999986432 2345679999999999999999886 5666777777
Q ss_pred cccCCC
Q psy16454 81 PKRAVP 86 (304)
Q Consensus 81 ~~~~~~ 86 (304)
+.|.++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 777643
No 150
>KOG4849|consensus
Probab=98.08 E-value=9.9e-06 Score=70.29 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=64.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCC--ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 99 VKKLFVGSLRDDITEEDLKEYFGQFG--EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 99 ~~~l~v~~l~~~~~~~~l~~~F~~~G--~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
..++||+||-|++|++||.+.+...| .+.+++++.++.++++||||+|...+..++++.++. ...+|.+..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 35799999999999999999998766 577889999999999999999999999999888877 6667878765553
No 151
>KOG0151|consensus
Probab=98.01 E-value=8.9e-06 Score=76.62 Aligned_cols=83 Identities=23% Similarity=0.400 Sum_probs=71.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeC---CCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEE
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEK---ETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVD 171 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~---~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~ 171 (304)
...++.|||.||+..++++.|...|..||+|..|+|+..+ +..+.+-|+||-|-+..+|++|++. ++..+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 3456789999999999999999999999999999998653 3455677999999999999999977 88889999999
Q ss_pred Eeeccch
Q psy16454 172 VKKALSK 178 (304)
Q Consensus 172 v~~~~~~ 178 (304)
+-|.+..
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 8887443
No 152
>KOG1855|consensus
Probab=97.94 E-value=6e-06 Score=73.48 Aligned_cols=68 Identities=24% Similarity=0.353 Sum_probs=56.6
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeee---CCC--CCc--------cceEEEEeCChhHHHHHHHh
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTE---KET--GKK--------RGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~---~~~--~~~--------~G~afV~f~~~~~a~~A~~~ 160 (304)
.++.+.++|.+.|||.+-.-|.|.++|..+|.|+.|+|+.- .++ +.+ +-+|+|||+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34457899999999999999999999999999999999865 222 111 45799999999999999987
Q ss_pred C
Q psy16454 161 G 161 (304)
Q Consensus 161 ~ 161 (304)
.
T Consensus 306 ~ 306 (484)
T KOG1855|consen 306 L 306 (484)
T ss_pred h
Confidence 4
No 153
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.93 E-value=4.8e-05 Score=52.68 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=46.1
Q ss_pred ceEEEcCCCCCCCHHHH----HHHHhcCC-ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 100 KKLFVGSLRDDITEEDL----KEYFGQFG-EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l----~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
..|+|.|||.+.+...| +++++.|| .|..|. .+.|+|.|.+++.|+.|.+. +++.+.+.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 57999999999887654 56666776 565552 24699999999999999976 9999999999999
Q ss_pred eccchHH
Q psy16454 174 KALSKEE 180 (304)
Q Consensus 174 ~~~~~~~ 180 (304)
+.....+
T Consensus 73 ~~~~~r~ 79 (90)
T PF11608_consen 73 FSPKNRE 79 (90)
T ss_dssp SS--S--
T ss_pred EcCCccc
Confidence 8854443
No 154
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.93 E-value=2.4e-05 Score=50.19 Aligned_cols=53 Identities=19% Similarity=0.406 Sum_probs=43.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHH
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQ 67 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al 67 (304)
++.|-|.+.|.+..+ +|..+|.+||+|.++.+... ..+.+|+|++..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 367889999888764 56679999999999887632 248999999999999985
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.92 E-value=2.6e-05 Score=57.77 Aligned_cols=56 Identities=23% Similarity=0.343 Sum_probs=37.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR 70 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~ 70 (304)
+.|+|.+++..++.++|+++|++|++|..|.+..... .|||.|.++++|++|++..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~ 57 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKL 57 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHH
Confidence 4688999999999999999999999999998887533 7999999999999998874
No 156
>KOG0921|consensus
Probab=97.87 E-value=0.00011 Score=71.68 Aligned_cols=8 Identities=25% Similarity=0.243 Sum_probs=2.9
Q ss_pred cEEEEEeC
Q psy16454 51 GFGFITYS 58 (304)
Q Consensus 51 G~aFV~f~ 58 (304)
+|+--.|+
T Consensus 903 ~~~g~kfs 910 (1282)
T KOG0921|consen 903 KFAGNKFS 910 (1282)
T ss_pred hccccccc
Confidence 33333333
No 157
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.86 E-value=4.8e-05 Score=52.68 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=44.1
Q ss_pred CeEEEcCCCCCCCHHHHH----HHhhhCC-ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccc
Q psy16454 9 RKLFIGGLDYRTSSETLK----SHFEAWG-DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPK 82 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~----~~F~~~G-~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~ 82 (304)
+.|+|.|||.+.+...|+ .++..+| .|.+|. .+.|.|.|.+++.|+.|++.+ ...+.+..|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 579999999998877665 5555676 466552 247999999999999998764 677888888888
Q ss_pred cCCCccc
Q psy16454 83 RAVPRTE 89 (304)
Q Consensus 83 ~~~~~~~ 89 (304)
......+
T Consensus 73 ~~~~~r~ 79 (90)
T PF11608_consen 73 FSPKNRE 79 (90)
T ss_dssp SS--S--
T ss_pred EcCCccc
Confidence 7754433
No 158
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.83 E-value=4.3e-05 Score=49.03 Aligned_cols=52 Identities=21% Similarity=0.441 Sum_probs=41.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHH
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC 158 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~ 158 (304)
+.|.|.+.+.+..+ +|..+|.+||+|+++.+... .-+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 46788888876554 45558999999999888632 237999999999999985
No 159
>KOG4210|consensus
Probab=97.82 E-value=1.6e-05 Score=69.60 Aligned_cols=82 Identities=23% Similarity=0.489 Sum_probs=70.5
Q ss_pred ccCeEE-EcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCC
Q psy16454 7 HLRKLF-IGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAV 85 (304)
Q Consensus 7 ~~~~v~-V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~ 85 (304)
...++| |.+|++++++++|+++|..++.|..+++..++.++.++++++|+|.+...+..++......+..+.+.+....
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 344555 9999999999999999999999999999999999999999999999999999998865566777777777666
Q ss_pred Ccc
Q psy16454 86 PRT 88 (304)
Q Consensus 86 ~~~ 88 (304)
+..
T Consensus 263 ~~~ 265 (285)
T KOG4210|consen 263 PRP 265 (285)
T ss_pred CCc
Confidence 543
No 160
>KOG0921|consensus
Probab=97.82 E-value=0.00044 Score=67.59 Aligned_cols=10 Identities=10% Similarity=0.069 Sum_probs=4.6
Q ss_pred HHHHHhhhCC
Q psy16454 24 TLKSHFEAWG 33 (304)
Q Consensus 24 ~l~~~F~~~G 33 (304)
+|++++.++.
T Consensus 956 ql~d~L~q~~ 965 (1282)
T KOG0921|consen 956 QLIDVLRQCS 965 (1282)
T ss_pred HHHHHHHhcc
Confidence 3444444444
No 161
>KOG1855|consensus
Probab=97.67 E-value=5.2e-05 Score=67.71 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=58.3
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeC---CCCC---C-------cccEEEEEeCCHHHHHHHHHh
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKD---PQTK---K-------SRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~---~-------~kG~aFV~f~~~e~a~~al~~ 69 (304)
.++-++++|.+-|||.+-.-+.|.++|..+|.|..|+|+.- +.+. . .+-+|+|||++.+.|++|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34458999999999999988999999999999999999865 2221 1 256899999999999999988
Q ss_pred CCC
Q psy16454 70 RPH 72 (304)
Q Consensus 70 ~~~ 72 (304)
+..
T Consensus 306 ~~~ 308 (484)
T KOG1855|consen 306 LNP 308 (484)
T ss_pred hch
Confidence 643
No 162
>KOG4849|consensus
Probab=97.64 E-value=4e-05 Score=66.62 Aligned_cols=69 Identities=19% Similarity=0.352 Sum_probs=59.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCc--eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCC-CCcCCe
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGD--VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARP-HTIDSK 77 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~--v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~-~~~~g~ 77 (304)
-.+||+||-|.+|+++|.+.+...|- +.++++..++.++.|||||.|...+..++++.++.+. .+|.+.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 35899999999999999999988874 7889999999999999999999999999999998874 344443
No 163
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.56 E-value=0.00038 Score=50.80 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=50.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEE-EeeeC------CCCCccceEEEEeCChhHHHHHHHhCCcccCCeeE-
Q psy16454 99 VKKLFVGSLRDDITEEDLKEYFGQFGEVTSVA-LVTEK------ETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKV- 170 (304)
Q Consensus 99 ~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~-i~~~~------~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i- 170 (304)
..-|.|-+.|.. ....|.++|++||+|.+.. +.++. .......+..|+|+++.+|++||.+|+..+.+..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 356888888887 6677888999999987764 10000 00122348999999999999999999999988654
Q ss_pred EEeec
Q psy16454 171 DVKKA 175 (304)
Q Consensus 171 ~v~~~ 175 (304)
-|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 45555
No 164
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.48 E-value=0.00047 Score=59.90 Aligned_cols=81 Identities=16% Similarity=0.412 Sum_probs=61.3
Q ss_pred CcceEEEcCCCCCCCHHH----H--HHHHhcCCceeEEEEeeeCCCC-Cccce--EEEEeCChhHHHHHHHh-CCcccCC
Q psy16454 98 TVKKLFVGSLRDDITEED----L--KEYFGQFGEVTSVALVTEKETG-KKRGF--GFVEYNDYDPVDKACLK-GTHLVKG 167 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~----l--~~~F~~~G~v~~v~i~~~~~~~-~~~G~--afV~f~~~~~a~~A~~~-~~~~~~g 167 (304)
+..-+||-.||..+..|+ | .++|.+||.|..|.|-+...+- ...+. .||+|.+.|+|..||.. +...++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345689999998876665 3 4789999999999886554211 11222 39999999999999988 8999999
Q ss_pred eeEEEeeccch
Q psy16454 168 KKVDVKKALSK 178 (304)
Q Consensus 168 ~~i~v~~~~~~ 178 (304)
+.|+..+-..+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99998766443
No 165
>KOG0129|consensus
Probab=97.46 E-value=0.00044 Score=63.41 Aligned_cols=66 Identities=32% Similarity=0.465 Sum_probs=61.3
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhh-hCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFE-AWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR 70 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~ 70 (304)
-++.+||||+.||.-+|.+||-.+|+ -||.|.-+-|=+|+.-+-.||-+=|+|++..+-.+||.+.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 36789999999999999999999999 8999999999899888999999999999999999999884
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.42 E-value=0.00047 Score=50.29 Aligned_cols=75 Identities=12% Similarity=0.188 Sum_probs=50.6
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCC-------CCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCe
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDP-------QTKKSRGFGFITYSSAHMVDDAQAARPHTIDSK 77 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~-------~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~ 77 (304)
....+.|.|=+.|+. ....|.++|++||.|.+..-+... .......+..|+|.++.+|++||..+...+.+.
T Consensus 3 ~~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~ 81 (100)
T PF05172_consen 3 QDSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGS 81 (100)
T ss_dssp -GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTC
T ss_pred CcCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCc
Confidence 345677888899998 456788999999998777511000 011234599999999999999999998888765
Q ss_pred eec
Q psy16454 78 VVE 80 (304)
Q Consensus 78 ~i~ 80 (304)
.+-
T Consensus 82 ~mv 84 (100)
T PF05172_consen 82 LMV 84 (100)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 167
>KOG3973|consensus
Probab=97.10 E-value=0.0076 Score=52.77 Aligned_cols=6 Identities=83% Similarity=1.686 Sum_probs=2.6
Q ss_pred CCCCCC
Q psy16454 298 GGRGGI 303 (304)
Q Consensus 298 ~~~gg~ 303 (304)
++||+|
T Consensus 455 ggrg~y 460 (465)
T KOG3973|consen 455 GGRGGY 460 (465)
T ss_pred CCCccc
Confidence 444444
No 168
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.96 E-value=0.005 Score=42.77 Aligned_cols=57 Identities=11% Similarity=0.200 Sum_probs=41.5
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR 70 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~ 70 (304)
|......||. +|......||.++|+.||.|. |.-+.| ..|||...+.+.|+.++...
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHH
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHh
Confidence 4445556666 999999999999999999884 555544 27999999999999988764
No 169
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.93 E-value=0.0022 Score=55.81 Aligned_cols=80 Identities=18% Similarity=0.342 Sum_probs=59.0
Q ss_pred cCeEEEcCCCCCCCHHHH------HHHhhhCCceeEEEEEeCCCCC-CcccEE--EEEeCCHHHHHHHHHhC-CCCcCCe
Q psy16454 8 LRKLFIGGLDYRTSSETL------KSHFEAWGDVVDVVVMKDPQTK-KSRGFG--FITYSSAHMVDDAQAAR-PHTIDSK 77 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l------~~~F~~~G~v~~v~i~~~~~~~-~~kG~a--FV~f~~~e~a~~al~~~-~~~~~g~ 77 (304)
.+.|||-.||+.+..+++ .++|.+||.|..|.+-+...+- .....+ ||+|.+.|+|..|+++- ...++++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 456899999998877662 2889999999988876532111 111224 99999999999999885 6778899
Q ss_pred eeccccCCCc
Q psy16454 78 VVEPKRAVPR 87 (304)
Q Consensus 78 ~i~~~~~~~~ 87 (304)
.+...+-..+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 8887765543
No 170
>KOG2314|consensus
Probab=96.93 E-value=0.00077 Score=62.41 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=52.7
Q ss_pred CccCeEEEcCCCCC------CCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC
Q psy16454 6 EHLRKLFIGGLDYR------TSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR 70 (304)
Q Consensus 6 ~~~~~v~V~nLp~~------~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~ 70 (304)
-..+.|+|-++|.- .-+.-|..+|+++|+|..+.+..+...+ ++||+|++|++..+|+.|++.+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l 125 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSL 125 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhc
Confidence 45677899999853 2334556889999999999999886655 9999999999999999999874
No 171
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.90 E-value=0.0077 Score=39.64 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=44.3
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCC---ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWG---DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G---~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~ 69 (304)
...+|+|.++ .+++.++|+.+|..|- ....|.-+.|. .|-|.|.+.+.|.+||.+
T Consensus 4 rpeavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 4 RPEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred eeceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 3468999998 5588899999999991 24467777663 599999999999999975
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.90 E-value=0.0048 Score=47.84 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=45.2
Q ss_pred HHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeeccc
Q psy16454 115 DLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALS 177 (304)
Q Consensus 115 ~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~~ 177 (304)
+|.+.|++||+|+-|+++.+ .-.|+|.+-++|.+|+.++...+.++.|+|+...+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 66778889999988888754 47999999999999999999999999999976643
No 173
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.88 E-value=0.007 Score=39.84 Aligned_cols=54 Identities=13% Similarity=0.363 Sum_probs=44.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcC---CceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh
Q psy16454 99 VKKLFVGSLRDDITEEDLKEYFGQF---GEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 99 ~~~l~v~~l~~~~~~~~l~~~F~~~---G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
..+|+|.++. +++.++|+.+|..| .....|.++.|. -|-|.|.+.+.|.+||.+
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 3589999984 58889999999988 245678888775 499999999999999864
No 174
>KOG2314|consensus
Probab=96.83 E-value=0.0019 Score=59.89 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=56.3
Q ss_pred ceEEEcCCCCCC--C----HHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCccc-CCeeEE
Q psy16454 100 KKLFVGSLRDDI--T----EEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLV-KGKKVD 171 (304)
Q Consensus 100 ~~l~v~~l~~~~--~----~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~-~g~~i~ 171 (304)
..|+|.++|--- . ...|..+|+++|+|+.+.++.+.+++ .+||.|++|++..+|+.|++. +++.| ..++..
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 578888888422 2 23466889999999999999887655 999999999999999999987 55554 455555
Q ss_pred Ee
Q psy16454 172 VK 173 (304)
Q Consensus 172 v~ 173 (304)
|.
T Consensus 138 v~ 139 (698)
T KOG2314|consen 138 VR 139 (698)
T ss_pred ee
Confidence 53
No 175
>KOG4676|consensus
Probab=96.79 E-value=0.0019 Score=57.36 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=61.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCC---CCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeecc
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKE---TGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKAL 176 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~---~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~ 176 (304)
..|.|.||..++|.++++.+|.-.|.|.++.++.... -....-.|||.|.+...+..|..+.+..|-++.|.|....
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 4799999999999999999999999999999876322 2233458999999999999998886666667766665443
No 176
>KOG0115|consensus
Probab=96.77 E-value=0.003 Score=53.08 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=63.8
Q ss_pred CCCCcCCeeeccccCCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeC
Q psy16454 70 RPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYN 149 (304)
Q Consensus 70 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~ 149 (304)
.+....++.+.+.++.. ..|+|.||+.-++.|.|.+.|+.|++|....++.|. .++..+-.+|+|.
T Consensus 15 d~~~~~~~~lr~rfa~~-------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~ 80 (275)
T KOG0115|consen 15 DGRFPKGRSLRVRFAMH-------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFA 80 (275)
T ss_pred CCCCCCCCceEEEeecc-------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhh
Confidence 35666788888877653 479999999999999999999999999887666654 4577778999999
Q ss_pred ChhHHHHHHHh
Q psy16454 150 DYDPVDKACLK 160 (304)
Q Consensus 150 ~~~~a~~A~~~ 160 (304)
..-.+.+|+..
T Consensus 81 ~k~~a~~a~rr 91 (275)
T KOG0115|consen 81 KKPNARKAARR 91 (275)
T ss_pred cchhHHHHHHH
Confidence 99999998866
No 177
>KOG0115|consensus
Probab=96.74 E-value=0.0062 Score=51.23 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=53.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~ 69 (304)
..|||.||+.-++.+.|.+.|+.|++|+...++.| +..+..+-.+|+|...-.|.+|+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr 91 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARR 91 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHH
Confidence 67999999999999999999999999998887776 4566778899999999998888776
No 178
>KOG1996|consensus
Probab=96.66 E-value=0.0058 Score=52.33 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCceeEEEEeeeCCCCCc-cceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeec
Q psy16454 113 EEDLKEYFGQFGEVTSVALVTEKETGKK-RGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 113 ~~~l~~~F~~~G~v~~v~i~~~~~~~~~-~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
++++++.+++||.|..|.|+.......- .--.||+|+..++|.+|+.. ++..|.|+.|...+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 4678899999999999998876532211 12379999999999999866 999999999876543
No 179
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.51 E-value=0.035 Score=47.77 Aligned_cols=155 Identities=10% Similarity=0.139 Sum_probs=93.1
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCC-------CCCcccEEEEEeCCHHHHHHHH-------HhC
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQ-------TKKSRGFGFITYSSAHMVDDAQ-------AAR 70 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-------~~~~kG~aFV~f~~~e~a~~al-------~~~ 70 (304)
+-.+|.|.+.||..+++-.++...|.+|++|++|.++.+.. .-+......+.|-+.+.+-..- ...
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999999999999999999998751 1233457888898887765441 112
Q ss_pred CCCcCCeeeccc-----cCCCccccC---------------CCCCCCCcceEEEcCCCCCC-CHHHHHHHH---hcCC--
Q psy16454 71 PHTIDSKVVEPK-----RAVPRTEIN---------------RPEAGATVKKLFVGSLRDDI-TEEDLKEYF---GQFG-- 124 (304)
Q Consensus 71 ~~~~~g~~i~~~-----~~~~~~~~~---------------~~~~~~~~~~l~v~~l~~~~-~~~~l~~~F---~~~G-- 124 (304)
.+.+....+.+. +........ .-.....++.|.|.-- ..+ +++-|.+.+ ..-.
T Consensus 92 K~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~ 170 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNK 170 (309)
T ss_pred HHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCc
Confidence 333333333322 211110000 0111234456666533 344 333333322 1111
Q ss_pred --ceeEEEEeeeCC--CCCccceEEEEeCChhHHHHHHHh
Q psy16454 125 --EVTSVALVTEKE--TGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 125 --~v~~v~i~~~~~--~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
.|+.|.|+...+ ..-++-||.++|-+..-|...++.
T Consensus 171 RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dY 210 (309)
T PF10567_consen 171 RYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDY 210 (309)
T ss_pred eEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHH
Confidence 467788875543 234677999999998888777643
No 180
>KOG2202|consensus
Probab=96.46 E-value=0.0014 Score=55.02 Aligned_cols=61 Identities=13% Similarity=0.285 Sum_probs=49.2
Q ss_pred HHHHHHHh-cCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeec
Q psy16454 114 EDLKEYFG-QFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 114 ~~l~~~F~-~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
|+|...|+ +||+|++++|..+. ....+|-++|.|...++|++|++. ++..+.+++|..+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444444 89999999776554 346778899999999999999977 999999999988766
No 181
>KOG2591|consensus
Probab=96.40 E-value=0.014 Score=54.30 Aligned_cols=68 Identities=12% Similarity=0.167 Sum_probs=54.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhc--CCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh---CCcccCCeeEEE
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQ--FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK---GTHLVKGKKVDV 172 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~--~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~---~~~~~~g~~i~v 172 (304)
..+.|.|..||..+-+|+|+.+|+. |-++++|.+..+.. =||+|++..||+.|.+. ...+|.+++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3456889999999999999999964 77888998876542 59999999999999754 455678887644
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.39 E-value=0.014 Score=40.53 Aligned_cols=51 Identities=16% Similarity=0.354 Sum_probs=37.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh
Q psy16454 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 101 ~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
..+|. .|..+...||.++|+.||.| .|.++.|. -|||...+.+.|..|+..
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHH
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHH
Confidence 44454 99999999999999999987 45555543 599999999999988765
No 183
>KOG3152|consensus
Probab=96.24 E-value=0.0031 Score=52.96 Aligned_cols=72 Identities=11% Similarity=0.206 Sum_probs=56.1
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCC--------CCcc----cEEEEEeCCHHHHHHHHHhC-CCC
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQT--------KKSR----GFGFITYSSAHMVDDAQAAR-PHT 73 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~--------~~~k----G~aFV~f~~~e~a~~al~~~-~~~ 73 (304)
.+-.||+.+||+.++...|+++|+.||.|-.|.+.+...+ +.++ --++|+|.+...|+.+...+ +..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3457999999999999999999999999999999876554 2222 24789999999999887764 444
Q ss_pred cCCee
Q psy16454 74 IDSKV 78 (304)
Q Consensus 74 ~~g~~ 78 (304)
|.++.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 54443
No 184
>PF11627 HnRNPA1: Nuclear factor hnRNPA1; InterPro: IPR021662 This family of proteins represents hnRNPA1, a nuclear factor that binds to Pol II transcripts. The family of hnRNP proteins are involved in numerous RNA-related activities [].
Probab=96.22 E-value=0.0087 Score=34.18 Aligned_cols=34 Identities=44% Similarity=0.735 Sum_probs=27.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy16454 266 GGGFGGGYQQSFGGGPMRGGGGGGRSGGAPYSGG 299 (304)
Q Consensus 266 ~~~~g~~~~~~~g~g~~~~g~~~g~~~g~~~~~~ 299 (304)
.+.++.+.++++.++||.++..++....++|+++
T Consensus 4 YndFGnyn~qsSnfGPmKggnfgG~RssgpyggG 37 (37)
T PF11627_consen 4 YNDFGNYNNQSSNFGPMKGGNFGGGRSSGPYGGG 37 (37)
T ss_pred cccccccccccCcccccccCCcCCccccCCCCCC
Confidence 4678899999999999999988884446788764
No 185
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=96.13 E-value=0.0026 Score=45.10 Aligned_cols=68 Identities=16% Similarity=0.294 Sum_probs=43.9
Q ss_pred EEEEeCCHHHHHHHHHhCCCCc--CCeeeccccCCC--cc-ccCCCCCCCCcceEEEcCCCCCCCHHHHHHHH
Q psy16454 53 GFITYSSAHMVDDAQAARPHTI--DSKVVEPKRAVP--RT-EINRPEAGATVKKLFVGSLRDDITEEDLKEYF 120 (304)
Q Consensus 53 aFV~f~~~e~a~~al~~~~~~~--~g~~i~~~~~~~--~~-~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F 120 (304)
|.|+|.+++.|++.++...+.+ ....+.++...- .. ..-.-......++|.|++||...++|+|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 6899999999999998865443 333333322211 10 01111223456789999999999999998744
No 186
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.10 E-value=0.021 Score=44.38 Aligned_cols=55 Identities=18% Similarity=0.307 Sum_probs=45.1
Q ss_pred HHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCCC
Q psy16454 24 TLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAVP 86 (304)
Q Consensus 24 ~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~~ 86 (304)
+|.+.|.+||+|.=|++..+ .-+|+|.+-+.|-+|+......+.++.+.++.+.+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 67788899999888887765 47999999999999999999999999998877654
No 187
>KOG2591|consensus
Probab=96.08 E-value=0.017 Score=53.79 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=56.1
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhh--CCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC---CCCcCCeeec
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEA--WGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR---PHTIDSKVVE 80 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~--~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~---~~~~~g~~i~ 80 (304)
.+-|.|.|+.||..+-+|+|+.||+. +-++++|.+-.+.+ =||+|++.+||++|.+.+ .++|.++.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 35567888999999999999999965 56788998877543 499999999999996653 5667777775
Q ss_pred ccc
Q psy16454 81 PKR 83 (304)
Q Consensus 81 ~~~ 83 (304)
.+.
T Consensus 246 ARI 248 (684)
T KOG2591|consen 246 ARI 248 (684)
T ss_pred hhh
Confidence 544
No 188
>KOG3152|consensus
Probab=96.05 E-value=0.0041 Score=52.26 Aligned_cols=72 Identities=22% Similarity=0.362 Sum_probs=56.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCC--------CCcc----ceEEEEeCChhHHHHHHHh-CCcc
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKET--------GKKR----GFGFVEYNDYDPVDKACLK-GTHL 164 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~--------~~~~----G~afV~f~~~~~a~~A~~~-~~~~ 164 (304)
.+-.||+++||+..+...|+++|+.||.|-.|-+-....+ +.++ --+.|||.+...|+.+.+. |+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3457999999999999999999999999999887655433 1111 1367999999999987766 8888
Q ss_pred cCCee
Q psy16454 165 VKGKK 169 (304)
Q Consensus 165 ~~g~~ 169 (304)
|.+++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 87775
No 189
>KOG2202|consensus
Probab=95.76 E-value=0.0026 Score=53.49 Aligned_cols=58 Identities=10% Similarity=0.227 Sum_probs=41.5
Q ss_pred HHHHHhh-hCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccc
Q psy16454 24 TLKSHFE-AWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPK 82 (304)
Q Consensus 24 ~l~~~F~-~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~ 82 (304)
+|...|+ +||+|+++.|..+. .-.-+|-++|.|...|+|++|++.+ +..+.+++|...
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae 143 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAE 143 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceee
Confidence 3333344 88999998776653 3346788999999999999999885 455666665443
No 190
>KOG2193|consensus
Probab=95.71 E-value=0.015 Score=52.25 Aligned_cols=77 Identities=29% Similarity=0.489 Sum_probs=58.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh--CCcccCCeeEEEeeccc
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK--GTHLVKGKKVDVKKALS 177 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~--~~~~~~g~~i~v~~~~~ 177 (304)
.+||+.||.+.++..+|..+|...-.-..-.++. ..+|+||.+.+...|.+|++. ...++.|++++|....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4799999999999999999997642111111111 236999999999999999987 44568999999998887
Q ss_pred hHHHh
Q psy16454 178 KEEMA 182 (304)
Q Consensus 178 ~~~~~ 182 (304)
+....
T Consensus 76 kkqrs 80 (584)
T KOG2193|consen 76 KKQRS 80 (584)
T ss_pred HHHHh
Confidence 76543
No 191
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.65 E-value=0.058 Score=41.48 Aligned_cols=73 Identities=7% Similarity=0.099 Sum_probs=54.0
Q ss_pred CCccCeEEEcCCCCC----CCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeec
Q psy16454 5 PEHLRKLFIGGLDYR----TSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVE 80 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~----~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~ 80 (304)
+.+..+|.|+=|..+ .+.+.|...++.||+|.+|.+.-. -.|.|.|.+..+|=+|+.+.+....+..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 345667777655554 344556677899999999987642 379999999999999999987776666666
Q ss_pred cccC
Q psy16454 81 PKRA 84 (304)
Q Consensus 81 ~~~~ 84 (304)
..|.
T Consensus 156 CsWq 159 (166)
T PF15023_consen 156 CSWQ 159 (166)
T ss_pred eecc
Confidence 5554
No 192
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=95.37 E-value=0.01 Score=46.99 Aligned_cols=118 Identities=14% Similarity=0.063 Sum_probs=81.7
Q ss_pred EEEcCC-C-CCCCHHHHHHHhhhC-CceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCCCc
Q psy16454 11 LFIGGL-D-YRTSSETLKSHFEAW-GDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAVPR 87 (304)
Q Consensus 11 v~V~nL-p-~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~~~ 87 (304)
..|+.+ . ...+-+.|.+.+.+. .....+.+..- ..++..++|.++++++++++..+..+.+..+.++...+.
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~ 92 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPD 92 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhccc
Confidence 344444 2 346677777776553 33333444332 125899999999999999999888888888888887765
Q ss_pred cccCCCCCCCCcceEEEcCCCCC-CCHHHHHHHHhcCCceeEEEEee
Q psy16454 88 TEINRPEAGATVKKLFVGSLRDD-ITEEDLKEYFGQFGEVTSVALVT 133 (304)
Q Consensus 88 ~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~F~~~G~v~~v~i~~ 133 (304)
............-=|.|.+||.. .+++.|+++.+.+|.+.+++...
T Consensus 93 ~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 93 FNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred ccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 54443333333344778899987 58888999999999998887654
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.35 E-value=0.019 Score=46.71 Aligned_cols=67 Identities=9% Similarity=0.022 Sum_probs=39.2
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhh-CCce---eEEEEEeCC-C-CCCcccEEEEEeCCHHHHHHHHHhC
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEA-WGDV---VDVVVMKDP-Q-TKKSRGFGFITYSSAHMVDDAQAAR 70 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~-~G~v---~~v~i~~~~-~-~~~~kG~aFV~f~~~e~a~~al~~~ 70 (304)
.+....+|.|++||+++|++++.+.+.. +... ..+.-.... . ....-..|||.|.+.+++...+...
T Consensus 3 ~~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~ 75 (176)
T PF03467_consen 3 KEKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRF 75 (176)
T ss_dssp ------EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHC
T ss_pred CcccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhc
Confidence 3456679999999999999999997776 5544 222211111 1 1122346999999999988888764
No 194
>KOG4285|consensus
Probab=95.33 E-value=0.13 Score=44.42 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=53.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCee-EEEeeccchH
Q psy16454 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKK-VDVKKALSKE 179 (304)
Q Consensus 101 ~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~-i~v~~~~~~~ 179 (304)
=|.|-++|.. .-..|..+|++||+|++.....+ --+-+|.|.+.-+|++||.++...|++.. |-|+.+..+.
T Consensus 199 WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 199 WVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred eEEEeccCcc-chhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCHH
Confidence 3555566543 34567889999999988765522 13899999999999999999999988876 4455555544
Q ss_pred HH
Q psy16454 180 EM 181 (304)
Q Consensus 180 ~~ 181 (304)
.+
T Consensus 272 vi 273 (350)
T KOG4285|consen 272 VI 273 (350)
T ss_pred Hh
Confidence 43
No 195
>KOG2416|consensus
Probab=94.94 E-value=0.033 Score=52.29 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=59.7
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHh-cCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcc---cCC
Q psy16454 93 PEAGATVKKLFVGSLRDDITEEDLKEYFG-QFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHL---VKG 167 (304)
Q Consensus 93 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~-~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~---~~g 167 (304)
+.....++.|+|.||-...|.-+|++++. .++.|++.+| | +-|-.|||.|.+.++|.+.+.+ ++.. -+.
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNP 511 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNP 511 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCC
Confidence 33456678999999999999999999998 4667777643 2 3445799999999999887755 4433 356
Q ss_pred eeEEEeeccchH
Q psy16454 168 KKVDVKKALSKE 179 (304)
Q Consensus 168 ~~i~v~~~~~~~ 179 (304)
+.|.+.+....+
T Consensus 512 K~L~adf~~~de 523 (718)
T KOG2416|consen 512 KHLIADFVRADE 523 (718)
T ss_pred ceeEeeecchhH
Confidence 677777765433
No 196
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.87 E-value=0.38 Score=35.82 Aligned_cols=66 Identities=8% Similarity=0.110 Sum_probs=48.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccC
Q psy16454 99 VKKLFVGSLRDDITEEDLKEYFGQFG-EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVK 166 (304)
Q Consensus 99 ~~~l~v~~l~~~~~~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~ 166 (304)
...+.+...|+.++.++|..+.+.+- .|..++|++|.. ..+=.+.|+|.+.++|++-.+. |+..++
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34556666677778888887777764 577888888754 2556799999999999988766 766543
No 197
>KOG1996|consensus
Probab=94.83 E-value=0.095 Score=45.12 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=45.1
Q ss_pred CHHHHHHHhhhCCceeEEEEEeCCCCCCc-ccEEEEEeCCHHHHHHHHHhC-CCCcCCeeec
Q psy16454 21 SSETLKSHFEAWGDVVDVVVMKDPQTKKS-RGFGFITYSSAHMVDDAQAAR-PHTIDSKVVE 80 (304)
Q Consensus 21 t~~~l~~~F~~~G~v~~v~i~~~~~~~~~-kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~ 80 (304)
-++++++.+++||.|..|.|...+..... .--.||+|+..++|.+|+-.+ ...|.++.+.
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 46788899999999999999887643321 124899999999999997764 5556666554
No 198
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.82 E-value=0.19 Score=38.73 Aligned_cols=74 Identities=22% Similarity=0.272 Sum_probs=53.3
Q ss_pred CCCCcceEEEcCCCCCCC-HHHHH---HHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeE
Q psy16454 95 AGATVKKLFVGSLRDDIT-EEDLK---EYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKV 170 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~-~~~l~---~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i 170 (304)
...+..+|.|.=|..++. .+||+ ..++.||+|.+|...-. -.|.|.|++..+|-+|+.+......+..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 345667888876665542 34444 45577999999987532 25999999999999999885556677777
Q ss_pred EEeec
Q psy16454 171 DVKKA 175 (304)
Q Consensus 171 ~v~~~ 175 (304)
...|.
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 77664
No 199
>KOG4285|consensus
Probab=94.58 E-value=0.13 Score=44.58 Aligned_cols=73 Identities=21% Similarity=0.208 Sum_probs=54.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeee-ccccCCC
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVV-EPKRAVP 86 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i-~~~~~~~ 86 (304)
...|-|=++|+... .-|..+|++||.|++.....+ -.+-+|.|.+..+|++||..+.+.|++..+ -|+....
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 45566767877654 468899999999977665532 249999999999999999999888876654 3455444
Q ss_pred c
Q psy16454 87 R 87 (304)
Q Consensus 87 ~ 87 (304)
+
T Consensus 270 k 270 (350)
T KOG4285|consen 270 K 270 (350)
T ss_pred H
Confidence 4
No 200
>KOG2068|consensus
Probab=94.56 E-value=0.013 Score=51.38 Aligned_cols=77 Identities=17% Similarity=0.392 Sum_probs=54.3
Q ss_pred ceEEEcCCCCCCCHHHH-H--HHHhcCCceeEEEEeeeCCCCC---ccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 100 KKLFVGSLRDDITEEDL-K--EYFGQFGEVTSVALVTEKETGK---KRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l-~--~~F~~~G~v~~v~i~~~~~~~~---~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
.-+||-.|+..+.++++ + +.|.+|+.|..|.+..+...-. ..--++|+|+..|+|..||.. +...++++.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45788888877655544 3 5788899999998887652111 112379999999999999977 777777777555
Q ss_pred eecc
Q psy16454 173 KKAL 176 (304)
Q Consensus 173 ~~~~ 176 (304)
.+..
T Consensus 158 ~~gt 161 (327)
T KOG2068|consen 158 SLGT 161 (327)
T ss_pred hhCC
Confidence 4443
No 201
>KOG2135|consensus
Probab=94.37 E-value=0.023 Score=51.95 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=57.8
Q ss_pred ceEEEcCCCCCC-CHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeeccc
Q psy16454 100 KKLFVGSLRDDI-TEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALS 177 (304)
Q Consensus 100 ~~l~v~~l~~~~-~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~~ 177 (304)
..|-+.-.|... +-++|..+|.+||.|..|.|-.... -|.|+|.+..+|-+|-......|+++.|+|.|..+
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEEecC
Confidence 345555555554 5689999999999999998765422 59999999999988888888999999999988765
No 202
>KOG2135|consensus
Probab=94.32 E-value=0.026 Score=51.59 Aligned_cols=76 Identities=13% Similarity=0.258 Sum_probs=59.8
Q ss_pred ccCeEEEcCCCCCC-CHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCC
Q psy16454 7 HLRKLFIGGLDYRT-SSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAV 85 (304)
Q Consensus 7 ~~~~v~V~nLp~~~-t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~ 85 (304)
+.+.|-+.-+|+.+ |.++|..+|.+||.|.+|.+-.... .|.|+|.+..+|-+|-......|+++.|++.|..
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEEec
Confidence 34455555566664 6788999999999999998765422 6999999999998888878889999999998876
Q ss_pred Ccc
Q psy16454 86 PRT 88 (304)
Q Consensus 86 ~~~ 88 (304)
+..
T Consensus 445 ps~ 447 (526)
T KOG2135|consen 445 PSP 447 (526)
T ss_pred CCc
Confidence 643
No 203
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.23 E-value=0.04 Score=44.78 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=45.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhc-CCce---eEEEEeeeC-C-CCCccceEEEEeCChhHHHHHHHh-CCcccCC---
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQ-FGEV---TSVALVTEK-E-TGKKRGFGFVEYNDYDPVDKACLK-GTHLVKG--- 167 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~-~G~v---~~v~i~~~~-~-~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g--- 167 (304)
...+|.|.+||+.+||+++.+.++. +... ..+.-.... . ....-.-|+|.|.+.+++..-+.. +++.|-+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3468999999999999999997776 4433 223211111 1 111234599999999998887766 6655422
Q ss_pred --eeEEEeeccc
Q psy16454 168 --KKVDVKKALS 177 (304)
Q Consensus 168 --~~i~v~~~~~ 177 (304)
....|++|.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 2455566544
No 204
>KOG2068|consensus
Probab=93.99 E-value=0.048 Score=47.90 Aligned_cols=111 Identities=15% Similarity=0.257 Sum_probs=68.1
Q ss_pred cCeEEEcCCCCCCCHHHHH---HHhhhCCceeEEEEEeCCC--CC-CcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeec
Q psy16454 8 LRKLFIGGLDYRTSSETLK---SHFEAWGDVVDVVVMKDPQ--TK-KSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVE 80 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~--~~-~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~ 80 (304)
.+.|||-.|+.++..+++. ++|.+||.|..|.+..++. .. -.-..++|+|...|+|..||..- ...++++.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3568888999886555554 6789999999998887652 11 12234899999999999998874 4445566655
Q ss_pred cccCCCccccCC--CCCCCCcceEEEcCCCC---CCCHHHHHH
Q psy16454 81 PKRAVPRTEINR--PEAGATVKKLFVGSLRD---DITEEDLKE 118 (304)
Q Consensus 81 ~~~~~~~~~~~~--~~~~~~~~~l~v~~l~~---~~~~~~l~~ 118 (304)
......+..... .........+|+..+.. .++.++++.
T Consensus 157 a~~gttkycs~~l~~~~c~~~~cmylhe~~~~~Ds~~k~e~~~ 199 (327)
T KOG2068|consen 157 ASLGTTKYCSFYLRNDICQNPDCMYLHEIGDQEDSFTKDEMKS 199 (327)
T ss_pred HhhCCCcchhHHhhhhcccCccccccccccccccccchHHHHH
Confidence 554444332211 11112223567665543 345555544
No 205
>KOG2416|consensus
Probab=93.98 E-value=0.029 Score=52.61 Aligned_cols=61 Identities=21% Similarity=0.236 Sum_probs=48.0
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhh-hCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFE-AWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR 70 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~ 70 (304)
..+.++.|||.||-.-.|.-+|++++. ..+.|++.+| |+. |-.|||.|.+.++|.+...++
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkI----KShCyV~yss~eEA~atr~Al 501 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKI----KSHCYVSYSSVEEAAATREAL 501 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHh----hcceeEecccHHHHHHHHHHH
Confidence 346788999999999999999999998 5555666632 322 347999999999998887774
No 206
>KOG0112|consensus
Probab=93.55 E-value=0.11 Score=51.38 Aligned_cols=59 Identities=19% Similarity=0.307 Sum_probs=51.5
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR 70 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~ 70 (304)
..++.|||+.|+.++....|...|..||+|..|.+-... -||+|.|++.+.+++|+..+
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~~ 511 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHDM 511 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHHH
Confidence 467889999999999999999999999999887765432 39999999999999998764
No 207
>KOG2318|consensus
Probab=93.34 E-value=0.5 Score=44.58 Aligned_cols=124 Identities=11% Similarity=0.206 Sum_probs=70.9
Q ss_pred CCccCeEEEcCCCCC-CCHHHHHHHhhhCC----ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeee
Q psy16454 5 PEHLRKLFIGGLDYR-TSSETLKSHFEAWG----DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVV 79 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~-~t~~~l~~~F~~~G----~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i 79 (304)
...+++|-|-||.|+ +..++|.-+|..|- .|.+|.|.+.. |-. .-|.. ..+.+.++
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe------------FGk-----eRM~e--EeV~GP~~ 231 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE------------FGK-----ERMKE--EEVHGPPK 231 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh------------hhH-----HHhhh--hcccCChh
Confidence 457889999999988 88999999998883 58888887752 111 11111 23344433
Q ss_pred ccccCCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHH
Q psy16454 80 EPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACL 159 (304)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~ 159 (304)
.+........... ..+..-++-.++.+.+| .+..+..+ ||.|+|.+.+.|.+.-+
T Consensus 232 el~~~~e~~~~s~--------------sD~ee~~~~~~~kLR~Y-q~~rLkYY----------yAVvecDsi~tA~~vYe 286 (650)
T KOG2318|consen 232 ELFKPVEEYKESE--------------SDDEEEEDVDREKLRQY-QLNRLKYY----------YAVVECDSIETAKAVYE 286 (650)
T ss_pred hhccccccCcccc--------------cchhhhhhHHHHHHHHH-HhhhheeE----------EEEEEecCchHHHHHHH
Confidence 3322221111100 11112222234444444 34444443 89999999999988776
Q ss_pred h-CCcccCCeeEEE
Q psy16454 160 K-GTHLVKGKKVDV 172 (304)
Q Consensus 160 ~-~~~~~~g~~i~v 172 (304)
. ++..+......+
T Consensus 287 ~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 287 ECDGIEFESSANKL 300 (650)
T ss_pred hcCcceecccccee
Confidence 6 666665544333
No 208
>KOG2253|consensus
Probab=92.68 E-value=0.095 Score=49.98 Aligned_cols=109 Identities=17% Similarity=0.108 Sum_probs=71.5
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~ 82 (304)
...+..+|||+||...+..+-++.++..+|.|.+++... |+|.+|..+..+..|+..+ ...+++..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 345678899999999999999999999999998887655 8999999999888887764 444555544443
Q ss_pred cCCCccc------------cCCCCCCCCcceEEEcCCCCCCCHHHHHHHHh
Q psy16454 83 RAVPRTE------------INRPEAGATVKKLFVGSLRDDITEEDLKEYFG 121 (304)
Q Consensus 83 ~~~~~~~------------~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~ 121 (304)
.....-. ...-.+....+.++|.++|....+......|.
T Consensus 107 ~d~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~ 157 (668)
T KOG2253|consen 107 VDEQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQ 157 (668)
T ss_pred chhhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHh
Confidence 3111000 00011111134466777776666655555554
No 209
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.62 E-value=1.2 Score=33.18 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=42.9
Q ss_pred CeEEE-cCCCCCCCHHHHHHHhhhCCc-eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q psy16454 9 RKLFI-GGLDYRTSSETLKSHFEAWGD-VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 9 ~~v~V-~nLp~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~ 69 (304)
.+|.| --.|.-++.++|..+.+.+-. |..++|+++.. .++-.+.++|.+.++|++..+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~ 73 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEE 73 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHH
Confidence 34444 445555666777777776655 77888888643 4667899999999999999876
No 210
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.58 E-value=2.6 Score=41.51 Aligned_cols=59 Identities=8% Similarity=0.124 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHhcCCc-----eeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeecc
Q psy16454 109 DDITEEDLKEYFGQFGE-----VTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKAL 176 (304)
Q Consensus 109 ~~~~~~~l~~~F~~~G~-----v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~ 176 (304)
..++.-+|-.++..-.. |-.|+|..+ |.||+... +.++..+.. ....+.+++|.|+.+.
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 45677777776655443 445666543 78999854 345555554 6778999999998874
No 211
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.08 E-value=0.49 Score=38.70 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=42.3
Q ss_pred CCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCC---CCcCCeeeccccCCC
Q psy16454 20 TSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARP---HTIDSKVVEPKRAVP 86 (304)
Q Consensus 20 ~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~---~~~~g~~i~~~~~~~ 86 (304)
...+.|+++|..+.++.++..++. -.-..|.|.+.++|++|...+. ..+.+..+.+.....
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hhHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 356899999999999888888764 2378999999999999998865 567788877766643
No 212
>KOG0804|consensus
Probab=91.14 E-value=0.9 Score=41.68 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=53.5
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCc-eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGD-VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~ 69 (304)
+..++.|+|--+|..+|-.||..|+..+-+ |.+|+|++|.. .++=.+.|+|.+.++|....+.
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~e 134 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEE 134 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHH
Confidence 344888999999999999999999987765 89999999654 3455799999999999999776
No 213
>KOG2253|consensus
Probab=90.48 E-value=0.32 Score=46.56 Aligned_cols=72 Identities=19% Similarity=0.149 Sum_probs=58.6
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
++..+..++||+|+...+.++-++.+...+|.|..+.... |+|.+|..+.....|+.. ....+++..+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 3345567999999999999999999999999887776543 899999999998888866 666677777666
Q ss_pred ee
Q psy16454 173 KK 174 (304)
Q Consensus 173 ~~ 174 (304)
..
T Consensus 106 ~~ 107 (668)
T KOG2253|consen 106 NV 107 (668)
T ss_pred cc
Confidence 44
No 214
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.05 E-value=1.4 Score=36.01 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=41.9
Q ss_pred CHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-C--CcccCCeeEEEeecc
Q psy16454 112 TEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-G--THLVKGKKVDVKKAL 176 (304)
Q Consensus 112 ~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~--~~~~~g~~i~v~~~~ 176 (304)
..+.|+++|..+..+....+++. -.-..|.|.+.++|.+|... + ...+.+..++|.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 56889999999998888776642 22589999999999999877 5 677999999997763
No 215
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.09 E-value=2.4 Score=28.91 Aligned_cols=65 Identities=17% Similarity=0.301 Sum_probs=36.2
Q ss_pred eEEEc-CCCCCCCHHHHHHHhhhCCc-----eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 10 KLFIG-GLDYRTSSETLKSHFEAWGD-----VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 10 ~v~V~-nLp~~~t~~~l~~~F~~~G~-----v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
++||. +--..++..+|..++..... |-+|.|..+ |+||+-... .|+++++. ....+.++.+.++
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 45552 22355899999999987753 567887764 899999875 45555555 5778888888776
Q ss_pred c
Q psy16454 83 R 83 (304)
Q Consensus 83 ~ 83 (304)
.
T Consensus 73 ~ 73 (74)
T PF03880_consen 73 R 73 (74)
T ss_dssp E
T ss_pred E
Confidence 4
No 216
>KOG0804|consensus
Probab=88.42 E-value=2.1 Score=39.34 Aligned_cols=67 Identities=13% Similarity=0.237 Sum_probs=54.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCC
Q psy16454 99 VKKLFVGSLRDDITEEDLKEYFGQFG-EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKG 167 (304)
Q Consensus 99 ~~~l~v~~l~~~~~~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g 167 (304)
.+.|+|-.+|..++-.||..+...+- .|.+++|++|... .+=.++|+|.+.++|..-.+. ++..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999998754 6889999997643 344789999999999998766 6666543
No 217
>KOG4574|consensus
Probab=87.38 E-value=0.44 Score=46.94 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=48.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR 70 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~ 70 (304)
.+.++.|.+-..+-..|-.+|.+||.|.+++.+++.+ .|.|+|.+.+.|..|+.++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl 354 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDAL 354 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhh
Confidence 3455667777788899999999999999999998865 7999999999999998885
No 218
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=86.53 E-value=4.1 Score=27.24 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 110 DITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 110 ~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
.++-++|+..+.+|. .. +|..|+ +| -||.|.+.++|+++... +...+....+.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~--~I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WD--RIRDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cc--eEEecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 568899999999984 23 344443 22 58999999999999977 666666555543
No 219
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=86.46 E-value=4.8 Score=27.46 Aligned_cols=58 Identities=26% Similarity=0.429 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHhcCC-----ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeec
Q psy16454 109 DDITEEDLKEYFGQFG-----EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 109 ~~~~~~~l~~~F~~~G-----~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
..++..+|..++.... .|-.|+|..+ |+||+-.. +.|+.++.. +...+.+++|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3567788888886653 4567777543 89999855 456677766 888999999999865
No 220
>KOG4574|consensus
Probab=85.67 E-value=0.52 Score=46.48 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=57.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCc--ccCCeeEEEeeccch
Q psy16454 102 LFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTH--LVKGKKVDVKKALSK 178 (304)
Q Consensus 102 l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~--~~~g~~i~v~~~~~~ 178 (304)
..+.|.+-.++-..|..+|++||.|.+++.+++-+ .|.|+|.+.+.|..|++. .++ .+.+-+.+|.+++.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 34445555667788999999999999999987754 799999999999999866 443 367788888888766
Q ss_pred HHH
Q psy16454 179 EEM 181 (304)
Q Consensus 179 ~~~ 181 (304)
+..
T Consensus 375 ~~~ 377 (1007)
T KOG4574|consen 375 PMY 377 (1007)
T ss_pred ccc
Confidence 543
No 221
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=85.55 E-value=0.66 Score=45.81 Aligned_cols=30 Identities=30% Similarity=0.351 Sum_probs=25.4
Q ss_pred CCccCeEEEcCCCCC-CCHHHHHHHhhhCCc
Q psy16454 5 PEHLRKLFIGGLDYR-TSSETLKSHFEAWGD 34 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~-~t~~~l~~~F~~~G~ 34 (304)
...++||+|..||.+ .++++|.++|.+...
T Consensus 205 ~~ssRTvlis~LP~~~~~~e~L~~~~~kl~~ 235 (827)
T COG5594 205 NLSSRTVLISGLPSELRSDEELKELFDKLKV 235 (827)
T ss_pred CCCCceEEeecCChhhcCchhHHHHHhhcCe
Confidence 457899999999988 578889999998854
No 222
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=85.55 E-value=2.2 Score=31.62 Aligned_cols=120 Identities=14% Similarity=0.186 Sum_probs=59.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-C--CCCcCCeeeccccCC
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-R--PHTIDSKVVEPKRAV 85 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~--~~~~~g~~i~~~~~~ 85 (304)
.+|.| ||+-++ .|.++|+.=|+|.+|..+..- .+. .|+-. + -..+++. +.+-...
T Consensus 6 QtVqV--lPPYTn--KLSDYfeSPGKI~svItvtqy-------------pdn----dal~~~~G~lE~vDg~-i~IGs~q 63 (145)
T TIGR02542 6 QTVQV--LPPYTN--KLSDYFESPGKIQSVITVTQY-------------PDN----DALLYVHGTLEQVDGN-IRIGSGQ 63 (145)
T ss_pred cceEe--cCCccc--hhhHHhcCCCceEEEEEEecc-------------CCc----hhhheeeeehhhccCc-EEEccCC
Confidence 34444 777665 488999999999998877642 221 12211 1 1123333 2222221
Q ss_pred CccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhc---CCceeEEEEeeeCCCCCccceEEEEeCChhH
Q psy16454 86 PRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQ---FGEVTSVALVTEKETGKKRGFGFVEYNDYDP 153 (304)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~---~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~ 153 (304)
......-.....-...+| -|+.+|-.+|+++|.+ |--|.+-.+.+|--..-+--.||.-|.....
T Consensus 64 ~~~sV~i~gTPsgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~~ 131 (145)
T TIGR02542 64 TPASVRIQGTPSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQF 131 (145)
T ss_pred CcccEEEecCCCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccchh
Confidence 111100001111112222 4788999999999976 4334433333332211222368888865533
No 223
>KOG4483|consensus
Probab=83.92 E-value=3.4 Score=37.47 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=46.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCce-eEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEV-TSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v-~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
..-...|-|.++|.....+||...|+.|..- -+|.++.|. .||-.|.+...|..||-.
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3455689999999999999999999998642 355666554 699999999999999876
No 224
>KOG4213|consensus
Probab=83.50 E-value=0.93 Score=36.35 Aligned_cols=63 Identities=10% Similarity=0.065 Sum_probs=41.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCC-CCCcccEEEEEeCCHHHHHHHHHhCCCCc
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQ-TKKSRGFGFITYSSAHMVDDAQAARPHTI 74 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~~~kG~aFV~f~~~e~a~~al~~~~~~~ 74 (304)
.++||.. |.+...++|.+|-+ +.+..|.+....+ ....+|..||+|.+.+.|.++++......
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~ 174 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKG 174 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhc
Confidence 3455655 33344444555544 6788887765432 23678999999999999999887654333
No 225
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=82.74 E-value=7 Score=35.60 Aligned_cols=41 Identities=17% Similarity=0.379 Sum_probs=32.0
Q ss_pred CCCCccCeEEEcCCCCC-CCHHHHHHHhhhC----CceeEEEEEeC
Q psy16454 3 KEPEHLRKLFIGGLDYR-TSSETLKSHFEAW----GDVVDVVVMKD 43 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~-~t~~~l~~~F~~~----G~v~~v~i~~~ 43 (304)
++-..+++|-|-||.|+ +...+|.-.|+.| |++..|.|.+.
T Consensus 141 e~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 141 EEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 34467888999999987 7888999888887 34777877764
No 226
>KOG4483|consensus
Probab=82.19 E-value=4 Score=37.02 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=49.9
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCce-eEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeee
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDV-VDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVV 79 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v-~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i 79 (304)
.+-.+.|-|-++|.....++|...|+.|..- -+|..+.+. .||..|++...|..||...+..+.-+.+
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lKiRpL 456 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLKIRPL 456 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEEeeeh
Confidence 3445678899999998888999999999752 334444432 6999999999999999875444444443
No 227
>KOG2891|consensus
Probab=81.57 E-value=4.3 Score=34.96 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=29.7
Q ss_pred CCcceEEEcCCCCC------------CCHHHHHHHHhcCCceeEEEEeee
Q psy16454 97 ATVKKLFVGSLRDD------------ITEEDLKEYFGQFGEVTSVALVTE 134 (304)
Q Consensus 97 ~~~~~l~v~~l~~~------------~~~~~l~~~F~~~G~v~~v~i~~~ 134 (304)
..+.+|++..||-. .+++.|+..|+.||.|..|.|+..
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipic 196 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPIC 196 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCccc
Confidence 44568888888732 367889999999999999888743
No 228
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=81.45 E-value=7.7 Score=25.93 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCC
Q psy16454 18 YRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARP 71 (304)
Q Consensus 18 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~ 71 (304)
..++-++|+..|.+|.- .+ |+.+ .| | -||.|.+.++|++|.....
T Consensus 10 ~~~~v~d~K~~Lr~y~~-~~--I~~d-~t----G-fYIvF~~~~Ea~rC~~~~~ 54 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW-DR--IRDD-RT----G-FYIVFNDSKEAERCFRAED 54 (66)
T ss_pred CCccHHHHHHHHhcCCc-ce--EEec-CC----E-EEEEECChHHHHHHHHhcC
Confidence 35788999999999953 23 3344 23 3 3999999999999998753
No 229
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=80.78 E-value=1.3 Score=40.06 Aligned_cols=63 Identities=14% Similarity=0.202 Sum_probs=52.1
Q ss_pred ccCeEEEcCCCCCCCHH--------HHHHHhhh--CCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q psy16454 7 HLRKLFIGGLDYRTSSE--------TLKSHFEA--WGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~--------~l~~~F~~--~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~ 69 (304)
..+.+|+..+..+.+.+ ++...|.. ..++..|.+.++.....+++..|++|...+.+++++..
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 44668888887765544 89999998 67888999988887788999999999999999998853
No 230
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=78.27 E-value=3.4 Score=27.71 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=44.0
Q ss_pred HHHHHHHhcCC-ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeeccch
Q psy16454 114 EDLKEYFGQFG-EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSK 178 (304)
Q Consensus 114 ~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~~~ 178 (304)
++|++.|+++| ++..|.-+..+.+..+--.-+|+.....+... ..+-..+.+++|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~--Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE--ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc--eEeehhhCCeeEEEecCccc
Confidence 46888888877 67788777777666666678888876544333 22445678889999876443
No 231
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=78.24 E-value=11 Score=26.04 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=37.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHH
Q psy16454 102 LFVGSLRDDITEEDLKEYFGQ-FG-EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC 158 (304)
Q Consensus 102 l~v~~l~~~~~~~~l~~~F~~-~G-~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~ 158 (304)
-|+-.++..++..+|++.+++ |+ .|..|..+.-+. +.. -|||++..-++|....
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~~K--KA~VtL~~g~~a~~va 71 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-GEK--KAYVKLAEEYAAEEIA 71 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-Cce--EEEEEECCCCcHHHHH
Confidence 344456788999999999988 44 566776655442 222 4999998877776654
No 232
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=77.88 E-value=11 Score=26.60 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=37.7
Q ss_pred EEcCCCCCCCHHHHHHHHhc-CC-ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHH
Q psy16454 103 FVGSLRDDITEEDLKEYFGQ-FG-EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACL 159 (304)
Q Consensus 103 ~v~~l~~~~~~~~l~~~F~~-~G-~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~ 159 (304)
|+--++..++..+|++.+++ |+ .|.+|..+.-+. +.. -|||++..-++|.....
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~K--KA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GEK--KAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CcE--EEEEEeCCCCcHHHHHH
Confidence 33345678899999999988 44 577777665542 222 49999988888777543
No 233
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=76.28 E-value=4.4 Score=27.27 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=43.7
Q ss_pred HHHHHHhhhCCc-eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCCC
Q psy16454 23 ETLKSHFEAWGD-VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAVP 86 (304)
Q Consensus 23 ~~l~~~F~~~G~-v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~~ 86 (304)
++|++.|...|- |.+|.-+..+.++.....-||+.+...+..+++.. ..+....+.+++...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~I--k~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYKI--KTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceeeh--HhhCCeEEEEecCCC
Confidence 578888888884 88888888887777778899998876554444332 345666676666543
No 234
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=74.72 E-value=6.3 Score=26.50 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=43.5
Q ss_pred HHHHHHHhcCC-ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeeccch
Q psy16454 114 EDLKEYFGQFG-EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSK 178 (304)
Q Consensus 114 ~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~~~ 178 (304)
++|++.|...| +|..|.-+..+.+.++--.-||+++...+..+++ +-..+.+..|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~--~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY--KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee--ehHhhCCeEEEEecCCCC
Confidence 56777787766 6777777766666667678899987766533322 445678888999876543
No 235
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=73.78 E-value=8.2 Score=29.01 Aligned_cols=56 Identities=21% Similarity=0.394 Sum_probs=30.4
Q ss_pred eEEEcCCCCCC---------CHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeC-ChhHHHHHHH
Q psy16454 101 KLFVGSLRDDI---------TEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYN-DYDPVDKACL 159 (304)
Q Consensus 101 ~l~v~~l~~~~---------~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~-~~~~a~~A~~ 159 (304)
.+.|.|++... +.+.|++.|+.|..++ ++.+.+.. -..++++|+|. +..-...|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 45666665433 4578999999997764 55555543 56789999996 4445555553
No 236
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=72.54 E-value=20 Score=24.75 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=40.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCC--ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH
Q psy16454 10 KLFIGGLDYRTSSETLKSHFEAWG--DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68 (304)
Q Consensus 10 ~v~V~nLp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~ 68 (304)
.-|+=.++.++|+.+|++.++++= .|.+|..+..+. ..--|||++..-+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHH
Confidence 345556889999999999998863 477777776543 22369999988777766544
No 237
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=72.26 E-value=19 Score=25.38 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=41.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhhC-C-ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q psy16454 11 LFIGGLDYRTSSETLKSHFEAW-G-DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 11 v~V~nLp~~~t~~~l~~~F~~~-G-~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~ 69 (304)
.|+=-++.++|+.+|++.++++ + .|.+|..+..+. ..--|||++...++|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 4444578899999999999986 3 477888776543 223699999988888776543
No 238
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=70.92 E-value=6.7 Score=35.02 Aligned_cols=56 Identities=13% Similarity=0.036 Sum_probs=33.9
Q ss_pred EEEEeCCHHHHHHHHHhCCCCcCCeeeccccCCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHh
Q psy16454 53 GFITYSSAHMVDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFG 121 (304)
Q Consensus 53 aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~ 121 (304)
|||+|++.++|+.|++....... ..+.++.+. +.+.|.-.||..+..+..++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-~~~~v~~AP------------eP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-NSWRVSPAP------------EPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-CCceEeeCC------------CcccccccccCCChHHHHHHHHHH
Confidence 79999999999999986422211 222332322 223466677766666666665544
No 239
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=70.00 E-value=6 Score=29.74 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=29.6
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCC-HHHHHHHHH
Q psy16454 10 KLFIGGLDYR---------TSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSS-AHMVDDAQA 68 (304)
Q Consensus 10 ~v~V~nLp~~---------~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~-~e~a~~al~ 68 (304)
++.|-|+|.+ ++.++|++.|+.|.++. ++.+.++. -..+++.|+|.. -.--..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 4667777543 46789999999998875 55555433 467899999975 333444443
No 240
>KOG3262|consensus
Probab=69.36 E-value=20 Score=29.08 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=9.1
Q ss_pred HHHHHHHHhcCCceeEEEE
Q psy16454 113 EEDLKEYFGQFGEVTSVAL 131 (304)
Q Consensus 113 ~~~l~~~F~~~G~v~~v~i 131 (304)
.++|-++=|-|++|.++.+
T Consensus 88 k~qIGKVDEIfG~i~d~~f 106 (215)
T KOG3262|consen 88 KEQIGKVDEIFGPINDVHF 106 (215)
T ss_pred hhhhcchhhhcccccccEE
Confidence 3444444444555555443
No 241
>KOG4410|consensus
Probab=68.65 E-value=16 Score=31.66 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=34.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCH
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSA 60 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~ 60 (304)
..-|+|.|||.++--.+|+..+.+.+-+. ..|.. .-..+-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~isw----kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISW----KGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEee----ecCCcceeEecCCc
Confidence 34599999999999999999999886542 22222 12346799999663
No 242
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=67.17 E-value=10 Score=33.14 Aligned_cols=80 Identities=11% Similarity=0.152 Sum_probs=58.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeC-------CCCCccceEEEEeCChhHHHHHH-------HhCC
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEK-------ETGKKRGFGFVEYNDYDPVDKAC-------LKGT 162 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~-------~~~~~~G~afV~f~~~~~a~~A~-------~~~~ 162 (304)
-.++.|.+.|+..+++-..+...|.+|++|+.|.++.+. +..+..-...+.|-+.+.|..-- .+-.
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999998765 12233457899999988776432 1233
Q ss_pred cccCCeeEEEeecc
Q psy16454 163 HLVKGKKVDVKKAL 176 (304)
Q Consensus 163 ~~~~g~~i~v~~~~ 176 (304)
..+....+.|.+..
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 44666666665543
No 243
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=66.72 E-value=7 Score=27.77 Aligned_cols=31 Identities=13% Similarity=0.137 Sum_probs=23.5
Q ss_pred EEEEeCChhHHHHHHHhC--CcccCCeeEEEee
Q psy16454 144 GFVEYNDYDPVDKACLKG--THLVKGKKVDVKK 174 (304)
Q Consensus 144 afV~f~~~~~a~~A~~~~--~~~~~g~~i~v~~ 174 (304)
|+|+|++++-|++.+++. ...++...+.|..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 689999999999998774 4446776666643
No 244
>KOG4008|consensus
Probab=66.61 E-value=11 Score=31.81 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=29.5
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEE
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVV 39 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~ 39 (304)
....++||+-|||..+|++.|.++.++++-+..+.
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 34678899999999999999999999998655443
No 245
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=65.76 E-value=7.4 Score=26.14 Aligned_cols=62 Identities=15% Similarity=0.127 Sum_probs=42.6
Q ss_pred HHHHHHhhhCC-ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCCC
Q psy16454 23 ETLKSHFEAWG-DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAVP 86 (304)
Q Consensus 23 ~~l~~~F~~~G-~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~~ 86 (304)
++|++.|...| +|..|..+..+.+......-||+.....+....++ -+.+.+..+.|++...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~Il~--ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEILN--IKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcceEe--ehhhCCeeEEEecCcc
Confidence 47888888888 48889988888877777788898876544333222 2345666666666543
No 246
>KOG4213|consensus
Probab=62.63 E-value=1.6 Score=35.02 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=39.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCC-CCccceEEEEeCChhHHHHHHHhCCcccCCeeE
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKET-GKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKV 170 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~-~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i 170 (304)
++++.. +.+...++|.++-+ +.+..|.+-...+. ...+|-.||+|.+.+.|.+.++..........+
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el 179 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETEL 179 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHH
Confidence 445554 33333344444444 57777766544322 246788999999999998877664444433333
No 247
>KOG4410|consensus
Probab=62.26 E-value=21 Score=31.09 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=34.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCCh
Q psy16454 99 VKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDY 151 (304)
Q Consensus 99 ~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~ 151 (304)
..-|+|.|||.++.-.||+..+.+.+.+ .+.|... -..+-||+.|-+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCc
Confidence 3469999999999999999999876533 2222221 2345799999654
No 248
>KOG2295|consensus
Probab=61.79 E-value=1.1 Score=42.29 Aligned_cols=62 Identities=8% Similarity=0.037 Sum_probs=47.5
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~ 68 (304)
..++|||.|++++++-++|..+++.+--+..+.+......+...-+.+|+|+---..+.|+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~ 291 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACW 291 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHH
Confidence 45789999999999999999999999777777776655555667788999975444444433
No 249
>PF14893 PNMA: PNMA
Probab=59.45 E-value=9.9 Score=34.18 Aligned_cols=52 Identities=10% Similarity=0.215 Sum_probs=32.7
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhh-CCceeEEEEEeC---CCCCCcccEEEEEeCC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEA-WGDVVDVVVMKD---PQTKKSRGFGFITYSS 59 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~-~G~v~~v~i~~~---~~~~~~kG~aFV~f~~ 59 (304)
+..+.|.|.+||.+|+++||++.+.. +-+.-..+++.. +.. ..--|+|+|..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~--~~~aalve~~e 71 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREE--NAKAALVEFAE 71 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhc--ccceeeeeccc
Confidence 45678999999999999999988764 223323333211 111 12367888864
No 250
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=57.37 E-value=26 Score=22.99 Aligned_cols=19 Identities=16% Similarity=0.475 Sum_probs=15.1
Q ss_pred HHHHHHHhhhCCceeEEEE
Q psy16454 22 SETLKSHFEAWGDVVDVVV 40 (304)
Q Consensus 22 ~~~l~~~F~~~G~v~~v~i 40 (304)
.++|+++|+++|+|.-+-+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 4689999999999865544
No 251
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=54.39 E-value=50 Score=28.65 Aligned_cols=34 Identities=26% Similarity=0.206 Sum_probs=26.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEe
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMK 42 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~ 42 (304)
....|.|||+++|..-|..+++..-.+..+.+|.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 4567899999999999999998776665555554
No 252
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=54.12 E-value=69 Score=21.99 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=41.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-------CCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCC
Q psy16454 102 LFVGSLRDDITEEDLKEYFGQ-------FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGT 162 (304)
Q Consensus 102 l~v~~l~~~~~~~~l~~~F~~-------~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~ 162 (304)
|-..+||..+|.++|.++..+ +..|..+....+... .+-||+.+=.|+|++.++.++.+
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~--~k~~Cly~Ap~~eaV~~~~~~aG 68 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDD--GKIFCLYEAPDEEAVREHARRAG 68 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCC--CeEEEEEECCCHHHHHHHHHHcC
Confidence 456678888999998776653 345666665555433 35688888889999888877653
No 253
>PRK11901 hypothetical protein; Reviewed
Probab=54.05 E-value=28 Score=30.99 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEE--EeCChhHHHHHHHhCCccc
Q psy16454 110 DITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFV--EYNDYDPVDKACLKGTHLV 165 (304)
Q Consensus 110 ~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV--~f~~~~~a~~A~~~~~~~~ 165 (304)
..+++.|+++..++. +..++|+....+++.. |..| .|.+.++|+.|+......+
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHHH
Confidence 456888888888774 5667777655555543 3333 6899999999998755543
No 254
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=53.86 E-value=10 Score=33.83 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=24.4
Q ss_pred EEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccchHH
Q psy16454 144 GFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALSKEE 180 (304)
Q Consensus 144 afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~~~ 180 (304)
|||+|++.++|..|++. ..+. .+.++++.|..+.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 79999999999999875 2222 24556666655544
No 255
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=51.36 E-value=62 Score=20.60 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=39.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCCh----hHHHHHHHh
Q psy16454 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDY----DPVDKACLK 160 (304)
Q Consensus 101 ~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~----~~a~~A~~~ 160 (304)
++.|.++.=.--...|++.+.+.-.|.++.+-... ..+-|+|... +++.++|++
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 46677777667788999999998889888875432 3688888744 556666655
No 256
>KOG3424|consensus
Probab=47.33 E-value=71 Score=23.96 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHhhhCCc-----eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHH
Q psy16454 18 YRTSSETLKSHFEAWGD-----VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA 66 (304)
Q Consensus 18 ~~~t~~~l~~~F~~~G~-----v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~a 66 (304)
.+++++||+|-+.+.=. |.-.-+...--.+++.+||.| |.+.|.|.+.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 45789999988866533 222222233346788889887 6666665543
No 257
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=47.27 E-value=1e+02 Score=23.72 Aligned_cols=116 Identities=17% Similarity=0.123 Sum_probs=47.0
Q ss_pred eEEEcCCC----CCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeec--ccc
Q psy16454 10 KLFIGGLD----YRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVE--PKR 83 (304)
Q Consensus 10 ~v~V~nLp----~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~--~~~ 83 (304)
.+++++|. ..+.-++|+++|+..| ..+|+... +++ ...|-.=.+.++.+..++..-....+..+. +..
T Consensus 5 iaLLRGINVGG~nki~MaeLr~~l~~~G-f~~V~Tyi--~SG---Nvvf~~~~~~~~l~~~ie~~l~~~fG~~v~v~vrs 78 (137)
T PF08002_consen 5 IALLRGINVGGKNKIKMAELREALEDLG-FTNVRTYI--QSG---NVVFESDRDPAELAAKIEKALEERFGFDVPVIVRS 78 (137)
T ss_dssp EEEESS-SBTTBS---HHHHHHHHHHCT--EEEEEET--TTT---EEEEEESS-HHHHHHHHHHHHHHH-TT---EEEEE
T ss_pred EEEEcceecCCCCcccHHHHHHHHHHcC-CCCceEEE--eeC---CEEEecCCChHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 46677764 3488999999999997 56666554 222 122222233334443343310001111111 111
Q ss_pred CCCcc--ccCCC---CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEE
Q psy16454 84 AVPRT--EINRP---EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVAL 131 (304)
Q Consensus 84 ~~~~~--~~~~~---~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i 131 (304)
...-. ....| ....+.++++|.=|....+.+.+.++-..-...+.+.+
T Consensus 79 ~~el~~i~~~nPf~~~~~~~~~~~~v~fl~~~~~~~~~~~l~~~~~~~E~~~~ 131 (137)
T PF08002_consen 79 AEELRAIIAANPFPWEAEADPKRLYVTFLSGPPDAEALEELAAYDTGPERFRV 131 (137)
T ss_dssp HHHHHHHHTT--GGGGS----SEEEEEEE-TT--HHHHHHHHTS---SEEEEE
T ss_pred HHHHHHHHHHCCCcccccCCcceEEEEEeCCCCCHHHHHHHhccCCCCcEEEE
Confidence 00000 00011 11234567777777788888877777665444455544
No 258
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=47.05 E-value=49 Score=24.21 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=28.7
Q ss_pred HHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q psy16454 23 ETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 23 ~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~ 69 (304)
.+|.+++++.| |.+-.|..+.. .+.-|+++++.|.++.-+++..
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~--~n~lFgy~E~~d~~a~m~~~a~ 70 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEE--ENLLFGYWEYEDFEADMAKMAE 70 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCC--cccEEEEEEEcChHHHHHHHhC
Confidence 46778888886 44444544432 2345999999977666666654
No 259
>PRK11901 hypothetical protein; Reviewed
Probab=46.76 E-value=65 Score=28.79 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=35.7
Q ss_pred CCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEE--EeCCHHHHHHHHHhCCCCcC
Q psy16454 20 TSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFI--TYSSAHMVDDAQAARPHTID 75 (304)
Q Consensus 20 ~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV--~f~~~e~a~~al~~~~~~~~ 75 (304)
.+++.|.+|..++. +..+++.+....++.- |..| .|.+.++|++|++.++..+.
T Consensus 254 s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~lq 309 (327)
T PRK11901 254 SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAEVQ 309 (327)
T ss_pred CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHHHH
Confidence 45788888888875 4556665543333321 2222 48999999999998876653
No 260
>PF14893 PNMA: PNMA
Probab=46.10 E-value=15 Score=33.02 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=23.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhc
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQ 122 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~ 122 (304)
......+.|.|.+||.++++++|++.+..
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHH
Confidence 33445678999999999999999887764
No 261
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=45.62 E-value=82 Score=20.39 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=31.9
Q ss_pred CHHHHHHHHhcCC-ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCc
Q psy16454 112 TEEDLKEYFGQFG-EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTH 163 (304)
Q Consensus 112 ~~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~ 163 (304)
.-.+|-++|.+.+ .|..+.+....+ +...-+.+++.+.|.++|+..+.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~----~~~~rl~~~~~~~~~~~L~~~G~ 62 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE----FGILRLIVSDPDKAKEALKEAGF 62 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEECCHHHHHHHHHHCCC
Confidence 4567788887765 677776644321 35666677888788888876543
No 262
>KOG1295|consensus
Probab=45.30 E-value=31 Score=31.32 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=44.5
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCc-eeEEEEEeCCCC--CCcccEEEEEeCCHHHHHHHHHh
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGD-VVDVVVMKDPQT--KKSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~--~~~kG~aFV~f~~~e~a~~al~~ 69 (304)
.....+.|.|..||+.+++++|.+.+..+-+ |....+.+.... ..-...|+|.|..++++.....-
T Consensus 3 ~~~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~ 71 (376)
T KOG1295|consen 3 KKEAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRR 71 (376)
T ss_pred ccccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhh
Confidence 4456678999999999999999998887644 322333221110 11256799999999886666544
No 263
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=45.20 E-value=9.1 Score=34.85 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=48.1
Q ss_pred ceEEEcCCCCCCCH--------HHHHHHHhc--CCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHH
Q psy16454 100 KKLFVGSLRDDITE--------EDLKEYFGQ--FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACL 159 (304)
Q Consensus 100 ~~l~v~~l~~~~~~--------~~l~~~F~~--~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~ 159 (304)
+.+|+.++....+. ++|...|.. +.++..+...++.....++|..|++|...+.+++++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45777777665544 489999998 6788888888877667788999999999999999883
No 264
>KOG4008|consensus
Probab=44.71 E-value=19 Score=30.44 Aligned_cols=33 Identities=30% Similarity=0.371 Sum_probs=27.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEE
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVA 130 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~ 130 (304)
...+||+-|+|..+|++.|.++.++++.+..+.
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 346899999999999999999999988655443
No 265
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=44.59 E-value=17 Score=21.02 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHhhhCC
Q psy16454 18 YRTSSETLKSHFEAWG 33 (304)
Q Consensus 18 ~~~t~~~l~~~F~~~G 33 (304)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4689999999998764
No 266
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=42.89 E-value=97 Score=24.25 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=36.3
Q ss_pred EEcCCCCCCCHHHHHHHhhhC-C-ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHH
Q psy16454 12 FIGGLDYRTSSETLKSHFEAW-G-DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQ 67 (304)
Q Consensus 12 ~V~nLp~~~t~~~l~~~F~~~-G-~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al 67 (304)
|+=-++..++..+|++.++++ + .|..|..+..+. + .--|||.+....+|....
T Consensus 85 yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g--~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 85 LVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-G--LKKAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-C--ceEEEEEECCCCcHHHHH
Confidence 333478899999999999885 3 367777766543 2 226999997766654443
No 267
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=41.60 E-value=68 Score=26.00 Aligned_cols=89 Identities=13% Similarity=0.099 Sum_probs=50.5
Q ss_pred HHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCCCccccCCCCCCCCcce
Q psy16454 22 SETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKK 101 (304)
Q Consensus 22 ~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 101 (304)
-++|.+.|.++-+|..|..+.+. .--.|-.+.|+..........+......+..+.+++.... -.
T Consensus 57 ieqL~kQL~KLidVl~V~~~~~~-~~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~~--------------~~ 121 (174)
T CHL00100 57 IEQLTKQLYKLVNILKVQDITNI-PCVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEES--------------LI 121 (174)
T ss_pred HHHHHHHHHHHhHhhEEEecCCc-cceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCCE--------------EE
Confidence 67888888888888888887663 3445668888886543222222222234556666554321 22
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCcee
Q psy16454 102 LFVGSLRDDITEEDLKEYFGQFGEVT 127 (304)
Q Consensus 102 l~v~~l~~~~~~~~l~~~F~~~G~v~ 127 (304)
|-+.+- .-.-+.+.+++++||.++
T Consensus 122 ie~tG~--~~ki~a~~~~l~~~gi~e 145 (174)
T CHL00100 122 LEVTGD--PGKIVAIEQLLEKFGIIE 145 (174)
T ss_pred EEEcCC--HHHHHHHHHHhhhcCCEE
Confidence 333322 223355666777887443
No 268
>PRK10905 cell division protein DamX; Validated
Probab=41.50 E-value=53 Score=29.26 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEE--EeCChhHHHHHHHhCCccc
Q psy16454 107 LRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFV--EYNDYDPVDKACLKGTHLV 165 (304)
Q Consensus 107 l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV--~f~~~~~a~~A~~~~~~~~ 165 (304)
|.-..+++.|+++..+++ +....++....+++.. |..+ .|.+.++|++|+......|
T Consensus 252 L~A~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLPa~v 310 (328)
T PRK10905 252 LSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLPADV 310 (328)
T ss_pred EEecCCHHHHHHHHHHcC-CCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCCHHH
Confidence 334457788998888874 4444455544444432 3222 6899999999998755544
No 269
>KOG4019|consensus
Probab=41.23 E-value=25 Score=28.46 Aligned_cols=70 Identities=13% Similarity=0.239 Sum_probs=42.4
Q ss_pred ceEEEcCCCCCCC-----HHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCe-eEEE
Q psy16454 100 KKLFVGSLRDDIT-----EEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGK-KVDV 172 (304)
Q Consensus 100 ~~l~v~~l~~~~~-----~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~-~i~v 172 (304)
.++.+.+|+..+- ......+|.+|-+.....++ ++..+.-|.|.+++.|..|..+ +...|.++ .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l------rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL------RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH------HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 3566666665432 22334555555444333333 2344677899999999999866 77778887 5555
Q ss_pred eec
Q psy16454 173 KKA 175 (304)
Q Consensus 173 ~~~ 175 (304)
-.+
T Consensus 85 yfa 87 (193)
T KOG4019|consen 85 YFA 87 (193)
T ss_pred EEc
Confidence 444
No 270
>KOG2318|consensus
Probab=41.05 E-value=41 Score=32.32 Aligned_cols=39 Identities=31% Similarity=0.474 Sum_probs=32.1
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHHHhcC----CceeEEEEeee
Q psy16454 96 GATVKKLFVGSLRDD-ITEEDLKEYFGQF----GEVTSVALVTE 134 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~-~~~~~l~~~F~~~----G~v~~v~i~~~ 134 (304)
...+++|-|-|+.|. +..++|.-+|..| |.|.+|.|+..
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS 214 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS 214 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh
Confidence 456789999999997 6788999999876 47889988754
No 271
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=40.10 E-value=46 Score=23.67 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=33.0
Q ss_pred EEcCCCCCCCHHHHHHHHhc-CC-ceeEEEEeeeCC----CCCc------cceEEEEeCChhHHH
Q psy16454 103 FVGSLRDDITEEDLKEYFGQ-FG-EVTSVALVTEKE----TGKK------RGFGFVEYNDYDPVD 155 (304)
Q Consensus 103 ~v~~l~~~~~~~~l~~~F~~-~G-~v~~v~i~~~~~----~~~~------~G~afV~f~~~~~a~ 155 (304)
++-.++.+++..+|++++++ |+ .|.+|..+.-.. .+.. .--|+|++...+...
T Consensus 23 ~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~i~ 87 (91)
T PF00276_consen 23 YTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDKIP 87 (91)
T ss_dssp EEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSCHH
T ss_pred EEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCccc
Confidence 44456788999999999987 54 466665544321 1110 125899988765443
No 272
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=38.33 E-value=1.4e+02 Score=28.21 Aligned_cols=59 Identities=8% Similarity=0.121 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCCC
Q psy16454 18 YRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAVP 86 (304)
Q Consensus 18 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~~ 86 (304)
...++++|..+|++-..-.+.+++... ....|+.+|.|... .+...+.+..+.++....
T Consensus 49 ~a~~~Kei~~~l~~~n~~~nlk~~~~~--td~~G~t~vr~~q~--------vnGvpv~g~~v~vh~dk~ 107 (507)
T COG3227 49 SAPNEKEILQFLENVNADNNLKAISTD--TDPNGFTHVRYQQV--------VNGVPVKGSEVIVHLDKN 107 (507)
T ss_pred ccCChHHHHHHHhcCChhhceeeEEee--ccCCCceEEEEEee--------ECCeeccCceEEEEECCC
Confidence 447889999999866555666666542 23468899998642 235556666666665543
No 273
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=37.93 E-value=55 Score=28.26 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.4
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhh
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFE 30 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~ 30 (304)
...++|+|||+.++.+-|..++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 46688999999999999999987
No 274
>KOG4019|consensus
Probab=36.26 E-value=22 Score=28.78 Aligned_cols=72 Identities=11% Similarity=0.112 Sum_probs=44.3
Q ss_pred cCeEEEcCCCCCC-----CHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCe-eec
Q psy16454 8 LRKLFIGGLDYRT-----SSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSK-VVE 80 (304)
Q Consensus 8 ~~~v~V~nLp~~~-----t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~-~i~ 80 (304)
.+++.+-+|+.++ .....+++|.+|.+.....+++ +.+..-|.|.+++.|+.|... ....+.++ .+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 3457777777653 2334456677666554444443 345778899999988888655 35566666 444
Q ss_pred cccCC
Q psy16454 81 PKRAV 85 (304)
Q Consensus 81 ~~~~~ 85 (304)
...+.
T Consensus 84 ~yfaQ 88 (193)
T KOG4019|consen 84 LYFAQ 88 (193)
T ss_pred EEEcc
Confidence 44443
No 275
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=35.57 E-value=1.2e+02 Score=19.24 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=39.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCH----HHHHHHHHh
Q psy16454 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSA----HMVDDAQAA 69 (304)
Q Consensus 10 ~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~----e~a~~al~~ 69 (304)
+|.|.+|.=.-....|++.+.+.-.|.++.+-... ..+-|+|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 56777887777788999999999889888875432 3678888644 555666654
No 276
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=35.45 E-value=61 Score=22.60 Aligned_cols=34 Identities=12% Similarity=0.264 Sum_probs=23.1
Q ss_pred ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCC
Q psy16454 34 DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPH 72 (304)
Q Consensus 34 ~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~ 72 (304)
.|.++....+ .+||-|||=.+++++.+|++-..+
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHhcccc
Confidence 3555554433 679999999999999999986543
No 277
>KOG2891|consensus
Probab=35.36 E-value=57 Score=28.33 Aligned_cols=39 Identities=23% Similarity=0.478 Sum_probs=30.3
Q ss_pred CCCccCeEEEcCCCCC------------CCHHHHHHHhhhCCceeEEEEEe
Q psy16454 4 EPEHLRKLFIGGLDYR------------TSSETLKSHFEAWGDVVDVVVMK 42 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~------------~t~~~l~~~F~~~G~v~~v~i~~ 42 (304)
+-+...|||+..||-. -+++.|+..|+.||.|..|.|..
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3355678999999842 36888999999999998887753
No 278
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.05 E-value=1.9e+02 Score=23.13 Aligned_cols=49 Identities=27% Similarity=0.251 Sum_probs=37.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh
Q psy16454 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 101 ~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
.+.| +|+..+.+|.|+++.+-+|-|.+. .+. .-.+-|-+.+..++||+.
T Consensus 114 ~iRv-~l~~~i~~erl~ei~E~~gvI~Ef---ee~-------~~V~I~Gdke~Ik~aLKe 162 (169)
T PF09869_consen 114 TIRV-KLKKPIQEERLQEISEWHGVIFEF---EED-------DKVVIEGDKERIKKALKE 162 (169)
T ss_pred eEEE-ecCccchHHHHHHHHHHhceeEEe---cCC-------cEEEEeccHHHHHHHHHH
Confidence 3444 588999999999999999877654 221 247788899999999865
No 279
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=34.64 E-value=74 Score=22.34 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=20.6
Q ss_pred ceeEEEEeeeCCCCCccceEEEEeCC
Q psy16454 125 EVTSVALVTEKETGKKRGFGFVEYND 150 (304)
Q Consensus 125 ~v~~v~i~~~~~~~~~~G~afV~f~~ 150 (304)
+|++|+|..-...++.+++|-|+|++
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 46778887766668899999999977
No 280
>KOG4365|consensus
Probab=34.37 E-value=10 Score=35.01 Aligned_cols=76 Identities=3% Similarity=-0.219 Sum_probs=49.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeecc
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKAL 176 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~ 176 (304)
.+.++..||..++++++.-+|+.|+.|..+..-+.-+.+..+-.+||+-.+.. +..+|.. .-..+.+..++|..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~~-~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKAN-GPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeeccC-cccccCHHHHhhhhhhhhhhhcCc
Confidence 35678889999999999999999999988876655444445556777765433 3344422 2233444555554443
No 281
>KOG3702|consensus
Probab=34.08 E-value=47 Score=32.46 Aligned_cols=73 Identities=10% Similarity=0.162 Sum_probs=54.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeecc
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEP 81 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~ 81 (304)
.+||+.+--...++.-+..+++...++...+++..........-++++|..+..++.|.......+..+.+.+
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKSLPNKKFASKCLKS 584 (681)
T ss_pred CceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhccccccccccceec
Confidence 3788888777778888888888888888888887766665556899999999999887665555454444443
No 282
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=33.86 E-value=2e+02 Score=21.91 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=41.5
Q ss_pred ccCeEEEcCCCCC---CCHHHHHHHhhhCCc-eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcC
Q psy16454 7 HLRKLFIGGLDYR---TSSETLKSHFEAWGD-VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTID 75 (304)
Q Consensus 7 ~~~~v~V~nLp~~---~t~~~l~~~F~~~G~-v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~ 75 (304)
+...|.|...... .+-..|++.+++-+- ++++..-.+ ..-|.|.+.++..+|.+.....+.
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~ 98 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLP 98 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcC
Confidence 3456777766433 567788888888875 445444332 578999999998888877655543
No 283
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=33.16 E-value=1.7e+02 Score=20.87 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=25.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCC--ceeEEEEEeC
Q psy16454 10 KLFIGGLDYRTSSETLKSHFEAWG--DVVDVVVMKD 43 (304)
Q Consensus 10 ~v~V~nLp~~~t~~~l~~~F~~~G--~v~~v~i~~~ 43 (304)
..|+=.++.++|..||++.|+.+= +|.+|..+.-
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~ 56 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNV 56 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEe
Confidence 344555888999999999999863 3667776654
No 284
>KOG4365|consensus
Probab=33.08 E-value=9.3 Score=35.21 Aligned_cols=51 Identities=6% Similarity=-0.227 Sum_probs=44.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCC
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSS 59 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~ 59 (304)
...|+..||-.++++++.-+|..|+.|..+.+.+..+.+..+=.+||.-.+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~ 54 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK 54 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec
Confidence 456788999999999999999999999999988887777777788888765
No 285
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=32.71 E-value=1.3e+02 Score=21.85 Aligned_cols=48 Identities=17% Similarity=0.316 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHhhh-CCceeEEEEEeCCC----CCCcccEEEEEeCCHHHHHHH
Q psy16454 18 YRTSSETLKSHFEA-WGDVVDVVVMKDPQ----TKKSRGFGFITYSSAHMVDDA 66 (304)
Q Consensus 18 ~~~t~~~l~~~F~~-~G~v~~v~i~~~~~----~~~~kG~aFV~f~~~e~a~~a 66 (304)
.+.+..+|++.+.+ |..-.+..++..-. .+++.|||.| |.+.+.|++.
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 35788888877654 44333444443322 2467777776 6666665554
No 286
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=32.50 E-value=86 Score=22.55 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=19.8
Q ss_pred ceeEEEEeeeCCCCCccceEEEEeCC
Q psy16454 125 EVTSVALVTEKETGKKRGFGFVEYND 150 (304)
Q Consensus 125 ~v~~v~i~~~~~~~~~~G~afV~f~~ 150 (304)
+|++|+|..-...++.+++|-|+|++
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 46777776655567889999999977
No 287
>KOG3262|consensus
Probab=32.49 E-value=2.8e+02 Score=22.69 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=6.3
Q ss_pred HHHHHHhcCCce
Q psy16454 115 DLKEYFGQFGEV 126 (304)
Q Consensus 115 ~l~~~F~~~G~v 126 (304)
.|.|+|-+..++
T Consensus 93 KVDEIfG~i~d~ 104 (215)
T KOG3262|consen 93 KVDEIFGPINDV 104 (215)
T ss_pred chhhhccccccc
Confidence 445556555544
No 288
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=32.28 E-value=1.4e+02 Score=29.62 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=35.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhC---CceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAW---GDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~ 69 (304)
.++|.|..||+.++.+.|.+.+.+. +.+. |.-++|..+ . .-.--|+++....++..+..
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~-~-~v~i~i~l~~~~~~~~~~~~ 281 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTA-E-NVEIEIKLPRGVYASEVIEA 281 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCC-C-cEEEEEEECCCCCHHHHHHH
Confidence 4689999999999999999876544 3443 444555322 2 12233445555455555443
No 289
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=31.39 E-value=84 Score=27.79 Aligned_cols=46 Identities=13% Similarity=0.034 Sum_probs=30.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCC
Q psy16454 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARP 71 (304)
Q Consensus 10 ~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~ 71 (304)
.+.|.|||+.++...|..+++..-.+..+.+|. ..|-|++.+....
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~----------------QkEvA~Rl~A~pg 148 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRCAVLMF----------------QKEFALRLLAQPG 148 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCceeeeee----------------hHHHHHHHhcCCC
Confidence 367899999999999999986533343333332 2567777765543
No 290
>PHA01632 hypothetical protein
Probab=31.10 E-value=53 Score=20.92 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=16.7
Q ss_pred EEcCCCCCCCHHHHHHHhhhC
Q psy16454 12 FIGGLDYRTSSETLKSHFEAW 32 (304)
Q Consensus 12 ~V~nLp~~~t~~~l~~~F~~~ 32 (304)
.|-.+|..-|+++|+..+.+.
T Consensus 20 lieqvp~kpteeelrkvlpki 40 (64)
T PHA01632 20 LIEQVPQKPTEEELRKVLPKI 40 (64)
T ss_pred ehhhcCCCCCHHHHHHHHHHH
Confidence 346889999999999877543
No 291
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=30.86 E-value=1.1e+02 Score=27.29 Aligned_cols=71 Identities=6% Similarity=0.027 Sum_probs=41.0
Q ss_pred ccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEE
Q psy16454 50 RGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSV 129 (304)
Q Consensus 50 kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v 129 (304)
+-|+..+|.+.++|.+..-.......-+...+-.+- ......+.+.|++|.++.+.+++.+ .+..+
T Consensus 34 ~~~~~~dypsle~av~~yl~~~~~~~~~~a~~AiAg----------Pv~gd~v~lTN~~W~~s~~~~r~~L----gl~~v 99 (320)
T COG0837 34 ETYACADYPSLEEAVQDYLSEHTAVAPRSACFAIAG----------PIDGDEVRLTNHDWVFSIARMRAEL----GLDHL 99 (320)
T ss_pred ceecccCcCCHHHHHHHHHHHhhccCccceEEEEec----------CccCCEEeeecCcccccHHHHHHhc----CCCcE
Confidence 457778888887765543222211111111111111 1122478999999999999998765 35566
Q ss_pred EEeee
Q psy16454 130 ALVTE 134 (304)
Q Consensus 130 ~i~~~ 134 (304)
.++.|
T Consensus 100 ~liND 104 (320)
T COG0837 100 SLIND 104 (320)
T ss_pred EEech
Confidence 66655
No 292
>KOG1175|consensus
Probab=30.85 E-value=66 Score=31.70 Aligned_cols=90 Identities=13% Similarity=0.178 Sum_probs=54.9
Q ss_pred CCCHHHHHHHhhhCCceeEEEEEeCCCC-CCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccCCCccccCCCCCC
Q psy16454 19 RTSSETLKSHFEAWGDVVDVVVMKDPQT-KKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRAVPRTEINRPEAG 96 (304)
Q Consensus 19 ~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~~~~~~~~~~~~~ 96 (304)
.+...||++.+..+-.|.++.++-.++. +--.-+|||.+++.+.....|.+. ...+... . ..-.
T Consensus 507 RigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~~VR~~-------i-------gp~a 572 (626)
T KOG1175|consen 507 RIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVKHVRSV-------I-------GPYA 572 (626)
T ss_pred eecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHHHHHhh-------c-------Cccc
Confidence 3678899999999999988888754332 223458999987654333333321 1111100 0 0011
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhc
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQ 122 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~ 122 (304)
.+...++|.+||++.+-..++.++.+
T Consensus 573 ~P~~I~~v~~LPkTrSGKimRr~lrk 598 (626)
T KOG1175|consen 573 VPRLIVFVPGLPKTRSGKIMRRALRK 598 (626)
T ss_pred ccceeEecCCCCccccchhHHHHHHH
Confidence 23457899999999887777766665
No 293
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=30.66 E-value=55 Score=28.40 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=26.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVT 133 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~ 133 (304)
....|+|||+++|-.-|..+++..-.+....++.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 4678999999999999999998765554555443
No 294
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=30.36 E-value=2e+02 Score=27.19 Aligned_cols=58 Identities=16% Similarity=0.315 Sum_probs=34.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhC---CceeEEEEEeCCCCCCcccEEEE-EeCCHHHHHHHHH
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAW---GDVVDVVVMKDPQTKKSRGFGFI-TYSSAHMVDDAQA 68 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~~~~kG~aFV-~f~~~e~a~~al~ 68 (304)
++|.|..||+.++.+++.+.+... +.+..|.-++|..+.. +.-|| ++.....++..++
T Consensus 226 ~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~~--~vrivI~lk~~~~~~~~~~ 287 (445)
T cd00187 226 NTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDRE--GIRFVIELKRGAMAEVVLN 287 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCCC--ceEEEEEECCCccHHHHHH
Confidence 689999999999999999876543 2233343444432221 45554 4554444444443
No 295
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=30.24 E-value=2.5e+02 Score=21.42 Aligned_cols=63 Identities=8% Similarity=0.030 Sum_probs=39.6
Q ss_pred CCHHHHHHHHhcCC-ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeecc-chHHH
Q psy16454 111 ITEEDLKEYFGQFG-EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKAL-SKEEM 181 (304)
Q Consensus 111 ~~~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~-~~~~~ 181 (304)
.+.+.|.+++++-+ .++++..-.+ ...|.|++.|+..+|.+. ....-++..|.+..+. ..+.+
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p~~tP~W 115 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDNSQAMQW 115 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCCCcchHH
Confidence 56678888888765 3444443222 489999999988877755 2333344566666665 34443
No 296
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=30.19 E-value=1.6e+02 Score=29.82 Aligned_cols=59 Identities=15% Similarity=0.252 Sum_probs=35.7
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhCCc---eeEEEEEeCCCCCCcccEEEE-EeCCHHHHHHHHH
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAWGD---VVDVVVMKDPQTKKSRGFGFI-TYSSAHMVDDAQA 68 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~G~---v~~v~i~~~~~~~~~kG~aFV-~f~~~e~a~~al~ 68 (304)
.++|.|..||+.++.++|.+.+...-. +..|.-++|..+. .+.-|| +++....++..+.
T Consensus 248 ~~~i~ItEiP~~~~~~~~~~~i~~l~~~~~~~~i~~~~Des~~--~~vrivi~lk~~~~~~~~~~ 310 (738)
T TIGR01061 248 LNQIVITEIPYETNKANIVKKIEEIIFDNKVAGIEEVRDESDR--NGIRIIIELKKDANAEKILN 310 (738)
T ss_pred CcEEEEEecCCccCHHHHHHHHHHHHhcCCccccceeeeccCC--CceEEEEEECCCCCHHHHHH
Confidence 357999999999999999987765432 3334444443322 245554 4554444555443
No 297
>KOG2854|consensus
Probab=29.94 E-value=1.7e+02 Score=26.30 Aligned_cols=141 Identities=14% Similarity=0.085 Sum_probs=68.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccCCC
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRAVP 86 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~~~ 86 (304)
..++|++-+-.|---+.|++..+.-|.-....+.++-.|+. ++.+...+....-+.|.+. ..+.+ .+.. ..
T Consensus 81 ~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TGt---Cavli~~~nRSL~anLgAAn~f~~d--hl~~--~~- 152 (343)
T KOG2854|consen 81 GATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTGT---CAVLITGDNRSLCANLGAANCFKVD--HLDK--EE- 152 (343)
T ss_pred CceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCCce---EEEEEeCCCcchhhccchhhccCHH--Hhcc--hh-
Confidence 38899999988888888888887777544444444444443 4444444443332222221 11111 1100 00
Q ss_pred ccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEE-----eee-----CCCCCccceEEEEeCChhHHHH
Q psy16454 87 RTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVAL-----VTE-----KETGKKRGFGFVEYNDYDPVDK 156 (304)
Q Consensus 87 ~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i-----~~~-----~~~~~~~G~afV~f~~~~~a~~ 156 (304)
....-+..+.+||..+-..+..+.|+.+-+..-+..++-+ +.- ..-.+.--|+.|.|.++++|++
T Consensus 153 -----~~~lveka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~a 227 (343)
T KOG2854|consen 153 -----NWALVEKAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAA 227 (343)
T ss_pred -----hhhhhhheeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHH
Confidence 0001122345677777666666665544432221111111 000 0001122378888888888876
Q ss_pred HHHhC
Q psy16454 157 ACLKG 161 (304)
Q Consensus 157 A~~~~ 161 (304)
-.+.+
T Consensus 228 f~~~~ 232 (343)
T KOG2854|consen 228 FARAH 232 (343)
T ss_pred HHHhh
Confidence 55443
No 298
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=29.80 E-value=16 Score=28.47 Aligned_cols=61 Identities=8% Similarity=0.098 Sum_probs=39.9
Q ss_pred CCHHHHHHHHhc-CCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeecc
Q psy16454 111 ITEEDLKEYFGQ-FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKAL 176 (304)
Q Consensus 111 ~~~~~l~~~F~~-~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~ 176 (304)
.+.+.|.+.+.+ +.....+.+..- ..++..+.|.+++++++++......+++..+.++.-.
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWS 90 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhc
Confidence 455666665554 222223333221 1248999999999999999888888888877775544
No 299
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=29.40 E-value=2e+02 Score=20.14 Aligned_cols=32 Identities=9% Similarity=0.164 Sum_probs=25.3
Q ss_pred EEEEeCChhHHHHHHHhCCcccCCeeEEEeec
Q psy16454 144 GFVEYNDYDPVDKACLKGTHLVKGKKVDVKKA 175 (304)
Q Consensus 144 afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~ 175 (304)
..|.|-+.++++..|+.+...+....|+....
T Consensus 43 ~~vvfGd~~~i~~~Le~~~~~I~~y~iE~drR 74 (83)
T PF08503_consen 43 FGVVFGDWDEIKPFLEANKDKIEDYRIENDRR 74 (83)
T ss_dssp EEEEEEEHHHHHHHHHHTTTTEEEEEEEE-GB
T ss_pred cEEEEecHHHHHHHHHhchhhCcEEEEEecCc
Confidence 34788899999999999888888888777543
No 300
>CHL00030 rpl23 ribosomal protein L23
Probab=28.93 E-value=2.1e+02 Score=20.52 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=25.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhC-C-ceeEEEEEeCC
Q psy16454 10 KLFIGGLDYRTSSETLKSHFEAW-G-DVVDVVVMKDP 44 (304)
Q Consensus 10 ~v~V~nLp~~~t~~~l~~~F~~~-G-~v~~v~i~~~~ 44 (304)
..|+=-++.++|+.+|++.++.+ + .|..|..+..+
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~ 56 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLP 56 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcC
Confidence 45555688999999999999885 3 36777766543
No 301
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=28.92 E-value=1.9e+02 Score=19.74 Aligned_cols=60 Identities=8% Similarity=-0.013 Sum_probs=39.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhhCC-------ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCC
Q psy16454 11 LFIGGLDYRTSSETLKSHFEAWG-------DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPH 72 (304)
Q Consensus 11 v~V~nLp~~~t~~~l~~~F~~~G-------~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~ 72 (304)
|-..+||..+|.++|.+.-.+.- .|.-++..-++. ..|-||+.+=.++|+++++.+....
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d--~~k~~Cly~Ap~~eaV~~~~~~aG~ 69 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSED--DGKIFCLYEAPDEEAVREHARRAGL 69 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecC--CCeEEEEEECCCHHHHHHHHHHcCC
Confidence 45678999899999887664442 333333333322 2356888888999988888776533
No 302
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=28.89 E-value=1.7e+02 Score=20.96 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=31.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-------C-CceeEEEEeeeC-----CCCCccc-eEEEEeCChhHHHHHHHh
Q psy16454 101 KLFVGSLRDDITEEDLKEYFGQ-------F-GEVTSVALVTEK-----ETGKKRG-FGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 101 ~l~v~~l~~~~~~~~l~~~F~~-------~-G~v~~v~i~~~~-----~~~~~~G-~afV~f~~~~~a~~A~~~ 160 (304)
.+|| |.++++++++.++.++ . |.|..+...-.+ -....+| |.++.|+...++-+.++.
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 4555 3456677766655443 3 356555422111 1233445 678889877776666654
No 303
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=28.71 E-value=1.1e+02 Score=26.16 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=20.0
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCc
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGD 34 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~ 34 (304)
+.++.|+ .|+..++++-|.-+.++++-
T Consensus 157 ~nr~aY~-~lS~Rad~~lLe~fc~~~gy 183 (318)
T COG4874 157 PNRTAYA-GLSQRADRELLEVFCEQIGY 183 (318)
T ss_pred cchhhhh-hhhcccCHHHHHHHHHHcCC
Confidence 4566666 48888888877777788774
No 304
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=28.22 E-value=76 Score=29.20 Aligned_cols=40 Identities=30% Similarity=0.512 Sum_probs=30.9
Q ss_pred CCCCCcceEEEcCCCCC-CCHHHHHHHHhcC----CceeEEEEee
Q psy16454 94 EAGATVKKLFVGSLRDD-ITEEDLKEYFGQF----GEVTSVALVT 133 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~-~~~~~l~~~F~~~----G~v~~v~i~~ 133 (304)
..-..+++|-|-||.|+ +...+|..+|+.| |.|..|.|+.
T Consensus 141 e~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 141 EEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred CCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 33556789999999996 6778999998875 5677777764
No 305
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=27.69 E-value=1.3e+02 Score=28.79 Aligned_cols=62 Identities=21% Similarity=0.378 Sum_probs=40.8
Q ss_pred CccCeEEEcCCCCC-CCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEE----EEeCCHHHHHHHHH
Q psy16454 6 EHLRKLFIGGLDYR-TSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGF----ITYSSAHMVDDAQA 68 (304)
Q Consensus 6 ~~~~~v~V~nLp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aF----V~f~~~e~a~~al~ 68 (304)
+....||.+-.|-+ .+-++|++.++++ .+.+..+...+.+....||+| +-.-..|..+.-|+
T Consensus 295 ~~~P~Vf~GlyPid~~dye~LrdAleKL-~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLe 361 (603)
T COG0481 295 EVKPMVFAGLYPVDSDDYEDLRDALEKL-QLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLE 361 (603)
T ss_pred cCCceEEEeecccChhHHHHHHHHHHhc-ccccceeeeccccchhccCceeehhhhHHHHHHHHHHHH
Confidence 34556999989976 4668899999988 566777777766666666655 33334444444443
No 306
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.65 E-value=1.8e+02 Score=22.76 Aligned_cols=45 Identities=27% Similarity=0.346 Sum_probs=35.3
Q ss_pred CCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh
Q psy16454 106 SLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 106 ~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
.|+..+.++.|+++.+-+|-|.+.. -.| -.+.|-+.+.+.+|++.
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke 162 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKE 162 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHH
Confidence 3678889999999999998877665 222 45678899999999865
No 307
>KOG1295|consensus
Probab=27.46 E-value=82 Score=28.71 Aligned_cols=67 Identities=21% Similarity=0.291 Sum_probs=42.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCc-eeEEEEeeeCCC--CCccceEEEEeCChhHHHHHHHh-CCcc
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGE-VTSVALVTEKET--GKKRGFGFVEYNDYDPVDKACLK-GTHL 164 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~-v~~v~i~~~~~~--~~~~G~afV~f~~~~~a~~A~~~-~~~~ 164 (304)
...+|.|..||...++++|.+...++-. |....+...... ...-..|+|.|..++++..-... +.+.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~i 76 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYI 76 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceE
Confidence 3457899999999999999988877532 222222211111 11245789999999986655444 4443
No 308
>PRK10905 cell division protein DamX; Validated
Probab=27.45 E-value=91 Score=27.83 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=35.0
Q ss_pred CCHHHHHHHhhhCCceeEEEEEeCCCCCCcc-cEEEEEeCCHHHHHHHHHhCCCCcC
Q psy16454 20 TSSETLKSHFEAWGDVVDVVVMKDPQTKKSR-GFGFITYSSAHMVDDAQAARPHTID 75 (304)
Q Consensus 20 ~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~k-G~aFV~f~~~e~a~~al~~~~~~~~ 75 (304)
.+++.|++|..+++ +....+......++.. -.-+=.|.+.++|++|++.++..+.
T Consensus 256 Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~vQ 311 (328)
T PRK10905 256 SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPADVQ 311 (328)
T ss_pred CCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHHHH
Confidence 46788888888884 4444444433333311 1122248999999999999876653
No 309
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=27.16 E-value=4e+02 Score=23.95 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=28.3
Q ss_pred eEEEcCCCCCCCHHHHH---HHHhcCCceeEEEEeeeCCCCCccceEEEEe
Q psy16454 101 KLFVGSLRDDITEEDLK---EYFGQFGEVTSVALVTEKETGKKRGFGFVEY 148 (304)
Q Consensus 101 ~l~v~~l~~~~~~~~l~---~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f 148 (304)
..++.+||.++.+.++. +++.+. .+.++.|..+...+.+.|++.+-+
T Consensus 188 ~~~~~~l~~~va~r~~~~a~~~L~~~-~~~dv~i~~~~~~~~s~G~~i~L~ 237 (326)
T cd00874 188 ISHAANLPPHVAERQAEAAAALLRKA-LGLQIEIEPEDQSALGPGSGIVLW 237 (326)
T ss_pred EEEEccCCHHHHHHHHHHHHHHHhhc-cCCCeEEEEEecCCCCCCEEEEEE
Confidence 45778899888776654 445552 223455555554566777766544
No 310
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.95 E-value=2.7e+02 Score=21.89 Aligned_cols=59 Identities=14% Similarity=0.262 Sum_probs=40.1
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCC---ceeEEEEEeCCCC---------CCccc-EEEEEeCCHHHH
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWG---DVVDVVVMKDPQT---------KKSRG-FGFITYSSAHMV 63 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G---~v~~v~i~~~~~~---------~~~kG-~aFV~f~~~e~a 63 (304)
|++..+|++.-++..+++++.++..++-. ++.+|++-+.+.+ ...+. |-+|.|++-+..
T Consensus 84 pkd~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~l 155 (161)
T COG5353 84 PKDDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKEL 155 (161)
T ss_pred cCCCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhh
Confidence 34458999999999999999998887653 4555655443322 12233 888999886543
No 311
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=26.80 E-value=2.2e+02 Score=20.93 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHH
Q psy16454 113 EEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACL 159 (304)
Q Consensus 113 ~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~ 159 (304)
+.+|.++++++| |..-.|..|..+.. =|+++++.|.++.-++|.
T Consensus 26 WPE~~a~lk~ag-i~nYSIfLde~~n~--lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 26 WPELLALLKEAG-IRNYSIFLDEEENL--LFGYWEYEDFEADMAKMA 69 (105)
T ss_pred cHHHHHHHHHcC-CceeEEEecCCccc--EEEEEEEcChHHHHHHHh
Confidence 456777888875 56666666654433 389999996665555553
No 312
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=26.56 E-value=1.7e+02 Score=27.79 Aligned_cols=59 Identities=20% Similarity=0.122 Sum_probs=37.1
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhC---CceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAW---GDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~ 69 (304)
.++|-|..||+.++.+.|.+.+.+. +.|. |.-++|..+ .. -.--|++.....++..+..
T Consensus 220 ~~~ivItEIPy~~~t~~lie~I~~l~~~gki~-I~~i~D~s~-~~-v~i~I~Lk~~~~~~~vl~~ 281 (479)
T PRK09630 220 DKTLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFST-DL-PHIEIKLPKGIYAKDLLRP 281 (479)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHhcCCCc-cceeeccCC-CC-ceEEEEECCCCCHHHHHHH
Confidence 4689999999999999999876544 3343 444555322 21 1234556665666666655
No 313
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=26.15 E-value=21 Score=23.91 Aligned_cols=37 Identities=8% Similarity=0.196 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh
Q psy16454 114 EDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 114 ~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
++|++.|+.+....++.-+ .+|..|++.++|..++..
T Consensus 27 ~~v~~~~~~~~~f~k~vkL----------~aF~pF~s~~~ALe~~~a 63 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL----------KAFSPFKSAEEALENANA 63 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh----------hhccCCCCHHHHHHHHHH
Confidence 6788777765443332211 389999999988777643
No 314
>KOG1177|consensus
Probab=26.04 E-value=6e+02 Score=24.52 Aligned_cols=85 Identities=9% Similarity=0.066 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHhhhCCceeEEEEEeCCCCCCc-ccEEEEEeCCHHH-------HHHHHHhCCCCcCCeeeccccCCCccc
Q psy16454 18 YRTSSETLKSHFEAWGDVVDVVVMKDPQTKKS-RGFGFITYSSAHM-------VDDAQAARPHTIDSKVVEPKRAVPRTE 89 (304)
Q Consensus 18 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~-kG~aFV~f~~~e~-------a~~al~~~~~~~~g~~i~~~~~~~~~~ 89 (304)
.++-..||+++|-+.-.|+++.++--+++..- -=+|+|.....++ .++.++.. +. +..
T Consensus 492 ENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t~E~lKa~Ck~k---la------HFK----- 557 (596)
T KOG1177|consen 492 ENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKTTAETLKAMCKGK---LA------HFK----- 557 (596)
T ss_pred cccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccccccccHHHHHHHHhcc---cc------ccc-----
Confidence 45788999999999988999988865443221 1256666543322 22222211 11 111
Q ss_pred cCCCCCCCCcceEEEcCCCCCCC----HHHHHHHHhcC
Q psy16454 90 INRPEAGATVKKLFVGSLRDDIT----EEDLKEYFGQF 123 (304)
Q Consensus 90 ~~~~~~~~~~~~l~v~~l~~~~~----~~~l~~~F~~~ 123 (304)
.+...|||.+.|..+| ..+|++.++..
T Consensus 558 -------iPky~vf~~~FPlT~tGKIqKFeir~~~k~~ 588 (596)
T KOG1177|consen 558 -------IPKYFVFVDEFPLTTTGKIQKFEIREMSKGH 588 (596)
T ss_pred -------CCcEEEEeccCcccccccchhHHHHHHHHhh
Confidence 1235678888887665 67888888743
No 315
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=25.77 E-value=3.1e+02 Score=23.31 Aligned_cols=60 Identities=22% Similarity=0.190 Sum_probs=41.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEE-EeCC---CCCCcccEEEEEeCCHHHHHHHHHh
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVV-MKDP---QTKKSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i-~~~~---~~~~~kG~aFV~f~~~e~a~~al~~ 69 (304)
-+|-|.-||-.-.++-++++|+..|--+.+.- ..|. ..+.|+ |..|+..-..-.+.|+..
T Consensus 119 L~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S~-y~~l~L~g~~rl~daL~H 182 (245)
T PF12623_consen 119 LEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDSR-YVDLTLTGTVRLADALNH 182 (245)
T ss_pred eEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCCc-ceEEEEeeeEEHHHHHhh
Confidence 35777888888899999999999996444433 2232 335555 778888776666777654
No 316
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=25.75 E-value=25 Score=22.56 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=19.2
Q ss_pred ccceEEEEeCC-hhHHHHHHHhCCcccCCeeEEEeecc
Q psy16454 140 KRGFGFVEYND-YDPVDKACLKGTHLVKGKKVDVKKAL 176 (304)
Q Consensus 140 ~~G~afV~f~~-~~~a~~A~~~~~~~~~g~~i~v~~~~ 176 (304)
++||+||..++ .++.--+-......+++-.|.|+...
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 56899999987 22211111223345677777776654
No 317
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=25.65 E-value=3.6e+02 Score=23.90 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=26.7
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEe
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMK 42 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~ 42 (304)
.++...+||+..=+.+...+.+++..+.+-.|++++++.
T Consensus 56 ~~~v~i~vyL~~~~~~~~~~~v~~~i~~~~gV~~v~~~s 94 (297)
T COG2177 56 ESQVEITVYLQIDADQDDAALVREKIEGIPGVKSVRFIS 94 (297)
T ss_pred hccceEEEEEecCCChHHHHHHHHHHhcCCCcceEEEeC
Confidence 345567788875555666677888888877777766654
No 318
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=25.57 E-value=1.1e+02 Score=26.56 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=18.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhh
Q psy16454 10 KLFIGGLDYRTSSETLKSHFEA 31 (304)
Q Consensus 10 ~v~V~nLp~~~t~~~l~~~F~~ 31 (304)
.+.|.|||+.++.+-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5779999999998888888764
No 319
>KOG0156|consensus
Probab=25.34 E-value=1.3e+02 Score=28.79 Aligned_cols=60 Identities=13% Similarity=0.214 Sum_probs=44.7
Q ss_pred EEEcCCCCCCC---HHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeE
Q psy16454 102 LFVGSLRDDIT---EEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKV 170 (304)
Q Consensus 102 l~v~~l~~~~~---~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i 170 (304)
=.|+||+.-.. ...+.++-++||+|-.+++-.. -.|.-.+.+.|++|+..+...+.+|+.
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 36777764333 3456666678999998887432 367778999999999999988888875
No 320
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=25.26 E-value=2.1e+02 Score=19.00 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=35.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCC
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSS 59 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~ 59 (304)
.+|.|.++.=.-....+++.++....|.++.+-... +.++|+|.+
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~------~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEK------GTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEccc------CeEEEEEcC
Confidence 467777777666778899999999888888886653 248999987
No 321
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=24.99 E-value=1.9e+02 Score=29.60 Aligned_cols=59 Identities=7% Similarity=0.206 Sum_probs=33.8
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhCCc---eeEEEEEeCCCCCCcccEEEEE-eCCHHHHHHHHH
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAWGD---VVDVVVMKDPQTKKSRGFGFIT-YSSAHMVDDAQA 68 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~G~---v~~v~i~~~~~~~~~kG~aFV~-f~~~e~a~~al~ 68 (304)
.++|.|..||+.+..+++.+.+.+.-. +..|.-++|..+. .++-||. .+....++..++
T Consensus 248 ~~~i~IteiP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~~--~~~~~~i~~k~~~~~~~~~~ 310 (800)
T TIGR01063 248 REAIIVTEIPYQVNKARLIEKIAELVREKKIEGISDIRDESDR--EGIRIVIELKRDAVAEVVLN 310 (800)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHhcCCCCccccceecCCC--CceEEEEEeCCCCCHHHHHH
Confidence 467999999999998888777654432 3333334443222 2455554 443334444443
No 322
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=24.74 E-value=1.6e+02 Score=22.63 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHhhhCCce--eEEEEEeCCC----CCCcccEEEEEeCCHHHHHH
Q psy16454 18 YRTSSETLKSHFEAWGDV--VDVVVMKDPQ----TKKSRGFGFITYSSAHMVDD 65 (304)
Q Consensus 18 ~~~t~~~l~~~F~~~G~v--~~v~i~~~~~----~~~~kG~aFV~f~~~e~a~~ 65 (304)
.+.+.+||++.+.+.=.| .++.++..-. .+.+.|||.| |.+.+.|.+
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 367889999887655442 3333333222 3567777777 566555444
No 323
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=24.42 E-value=2.4e+02 Score=19.35 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=40.0
Q ss_pred cCCCCCCCHHHHHHHH-hcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEE
Q psy16454 105 GSLRDDITEEDLKEYF-GQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDV 172 (304)
Q Consensus 105 ~~l~~~~~~~~l~~~F-~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 172 (304)
-.+|..+.-+||+.-. +.||...++....+. -.|-..+.+|.++|++.......-+.++|
T Consensus 14 i~f~RPvkf~dl~~kv~~afGq~mdl~ytn~e--------L~iPl~~Q~DLDkAie~ld~s~~~ksLRi 74 (79)
T cd06405 14 IQFPRPVKFKDLQQKVTTAFGQPMDLHYTNNE--------LLIPLKNQEDLDRAIELLDRSPHMKSLRI 74 (79)
T ss_pred EecCCCccHHHHHHHHHHHhCCeeeEEEeccc--------EEEeccCHHHHHHHHHHHccCccccceeE
Confidence 3456677777776654 458877666654332 67888999999999987444444455544
No 324
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=24.12 E-value=2.2e+02 Score=18.70 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=29.6
Q ss_pred HHHHHhhhCCceeEEEEEeCCCC-CCcccEEEEEeCCHHHHHHHHHh
Q psy16454 24 TLKSHFEAWGDVVDVVVMKDPQT-KKSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 24 ~l~~~F~~~G~v~~v~i~~~~~~-~~~kG~aFV~f~~~e~a~~al~~ 69 (304)
||++.+.++-.|.++.++..++. .-..-.|||.. +.++..+.++.
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-~~~~i~~~~~~ 46 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-DEEEIRDHLRD 46 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-HHHHHHHHHHH
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-eecccccchhh
Confidence 57888889988988887754322 12566899988 44444444443
No 325
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=24.02 E-value=1.7e+02 Score=22.91 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=22.8
Q ss_pred eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC
Q psy16454 35 VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR 70 (304)
Q Consensus 35 v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~ 70 (304)
|.+|.+... ..||.||+....+++..++...
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v 66 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGI 66 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcC
Confidence 555555443 6899999999888888888654
No 326
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=23.95 E-value=5.2e+02 Score=24.79 Aligned_cols=52 Identities=12% Similarity=0.217 Sum_probs=36.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhH
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDP 153 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~ 153 (304)
.+||--++|. ..-.|+++++..++-.+|.++.-++.++..|-++|-|+.++.
T Consensus 419 e~~~~~~fpe--rpgaL~~Fl~~l~~~~~It~f~Yr~~~~~~g~~l~gi~~~~~ 470 (499)
T TIGR01124 419 ERLYSFEFPE--RPGALLRFLNTLQGYWNISLFHYRNHGADYGRVLAGFQVPDH 470 (499)
T ss_pred ceEEEEeCCC--CccHHHHHHHhcCCCCceeeEEEecCCcccCCEEEEEecCch
Confidence 4666666665 345688888887776667666666677888888998876543
No 327
>KOG0862|consensus
Probab=23.87 E-value=62 Score=27.06 Aligned_cols=30 Identities=27% Similarity=0.648 Sum_probs=18.1
Q ss_pred HHHHHHHhc-CCceeEEEEeeeCCCCCccceEEEEeCCh
Q psy16454 114 EDLKEYFGQ-FGEVTSVALVTEKETGKKRGFGFVEYNDY 151 (304)
Q Consensus 114 ~~l~~~F~~-~G~v~~v~i~~~~~~~~~~G~afV~f~~~ 151 (304)
|+|.+.|.+ |+.- ..+..+|-|+||+|++-
T Consensus 89 edL~~EF~~~~~~~--------~~~~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKN--------IIQPASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHhcccc--------cCCccCCCeeEEehhHH
Confidence 567666654 4321 11335677999999653
No 328
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=23.53 E-value=6.7e+02 Score=24.17 Aligned_cols=113 Identities=15% Similarity=0.140 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHhhhCCceeEEEEEe--CCCCCCcccEEEEEeCC-----HHHHHHHHHhCCCCcCCeeeccccCCCcccc
Q psy16454 18 YRTSSETLKSHFEAWGDVVDVVVMK--DPQTKKSRGFGFITYSS-----AHMVDDAQAARPHTIDSKVVEPKRAVPRTEI 90 (304)
Q Consensus 18 ~~~t~~~l~~~F~~~G~v~~v~i~~--~~~~~~~kG~aFV~f~~-----~e~a~~al~~~~~~~~g~~i~~~~~~~~~~~ 90 (304)
..+..+||++.+.++-.|.++.++- ++........++|...+ .++..+.+... +
T Consensus 470 ~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~l~~~---L---------------- 530 (600)
T PRK08279 470 ENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDLAALAAHLYER---L---------------- 530 (600)
T ss_pred cccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCccCCHHHHHHHHHhh---C----------------
Confidence 4578899999999988888887742 32222233456665542 22222222210 1
Q ss_pred CCCCCCCCcceEEEcCCCCCC----CHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHH
Q psy16454 91 NRPEAGATVKKLFVGSLRDDI----TEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDK 156 (304)
Q Consensus 91 ~~~~~~~~~~~l~v~~l~~~~----~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~ 156 (304)
+....+...++|..||... +...|++.+...-.+..+-...|.. +. +++-..++-.|+.
T Consensus 531 --~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~ 593 (600)
T PRK08279 531 --PAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFDPSKVDDPLYVLDPG---SG--GYVPLTAELYAEI 593 (600)
T ss_pred --ccccCCeEEEeecCCCCCcchhhhHHHHhhcCCCccccCCeeEEEecC---CC--ceEecCHHHHHHH
Confidence 1111233456777787664 5666766554444455544445543 23 4455555555443
No 329
>COG4314 NosL Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]
Probab=22.78 E-value=1.1e+02 Score=24.17 Aligned_cols=16 Identities=13% Similarity=0.177 Sum_probs=12.8
Q ss_pred EeCCHHHHHHHHHhCC
Q psy16454 56 TYSSAHMVDDAQAARP 71 (304)
Q Consensus 56 ~f~~~e~a~~al~~~~ 71 (304)
-|.++++|++....+.
T Consensus 132 pF~~e~aA~~faa~~G 147 (176)
T COG4314 132 PFSDEEAAERFAADNG 147 (176)
T ss_pred cccCHHHHHHHHHhcC
Confidence 3899999999887653
No 330
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=22.74 E-value=2.8e+02 Score=26.16 Aligned_cols=59 Identities=12% Similarity=0.280 Sum_probs=34.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhC---CceeEEEEEeCCCCCCcccEEEE-EeCCHHHHHHHHH
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAW---GDVVDVVVMKDPQTKKSRGFGFI-TYSSAHMVDDAQA 68 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~~~~kG~aFV-~f~~~e~a~~al~ 68 (304)
++|.|..||+.++.+++++.+... ..|..+.-+.|..+.+ .+.-|| +++....++..++
T Consensus 233 ~~ivItElP~~~~~~~~~e~I~~lv~~~ki~~i~~~~des~~~-~~vrivI~lk~~~~~~~~~~ 295 (445)
T smart00434 233 NTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDESHDR-TGVRIVIELKRGAMAEVVLN 295 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHHHHhcCCCCcceehhhccCCC-CceEEEEEECCCcCHHHHHH
Confidence 689999999999999999876543 3344444444322112 234444 4554444444433
No 331
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=22.66 E-value=3.7e+02 Score=26.31 Aligned_cols=38 Identities=8% Similarity=0.266 Sum_probs=29.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVT 133 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~ 133 (304)
..+...||+.+|+.++.++.-.++....--++.+.|++
T Consensus 298 Gl~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~r 335 (621)
T COG0445 298 GLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILR 335 (621)
T ss_pred CCCCceEecCcccccCCHHHHHHHHHhCcccccceeec
Confidence 34567899999999999888778887776677777764
No 332
>KOG3432|consensus
Probab=22.51 E-value=76 Score=23.43 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHhhhCCceeEEEEE
Q psy16454 17 DYRTSSETLKSHFEAWGDVVDVVVM 41 (304)
Q Consensus 17 p~~~t~~~l~~~F~~~G~v~~v~i~ 41 (304)
..++|+++|++.|.+|-.-.+|.|+
T Consensus 42 ~~~Tt~~eiedaF~~f~~RdDIaIi 66 (121)
T KOG3432|consen 42 DSKTTVEEIEDAFKSFTARDDIAII 66 (121)
T ss_pred eccCCHHHHHHHHHhhccccCeEEE
Confidence 4589999999999999765554443
No 333
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=22.19 E-value=1.4e+02 Score=23.54 Aligned_cols=56 Identities=18% Similarity=0.225 Sum_probs=35.3
Q ss_pred EEEcCCC-CCCCHHHHHHHhhhCCc--eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC
Q psy16454 11 LFIGGLD-YRTSSETLKSHFEAWGD--VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR 70 (304)
Q Consensus 11 v~V~nLp-~~~t~~~l~~~F~~~G~--v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~ 70 (304)
+|+++|- +..+-++|++++..+-. +.+++....+. -..+.|+|..+-++...|..+
T Consensus 7 a~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~~~----~~sv~V~f~ipreaa~~Lr~L 65 (149)
T PF13820_consen 7 AYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKVEP----WNSVRVTFSIPREAATRLRQL 65 (149)
T ss_pred EEECChhhhHHHHHHHHHHHHHHHhcccccceeecccc----CceEEEEEechHHHHHHHHHH
Confidence 4567775 33566677777766543 23343333222 247999999998888877764
No 334
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=21.97 E-value=1.8e+02 Score=20.57 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=30.6
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEe
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITY 57 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f 57 (304)
|...-|||++++..+-|. |.+...++-+--++.++...++ ..||+|-++
T Consensus 23 Ei~~GVyVg~~s~rVRe~-lW~~v~~~~~~G~a~m~~~~~n--eqG~~~~t~ 71 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRER-LWERVTEWIGDGSAVMVWSDNN--EQGFDFRTL 71 (86)
T ss_pred ecCCCcEEcCCCHHHHHH-HHHHHHhhCCCccEEEEEccCC--CCCEEEEEe
Confidence 345569999998877654 5555555434444555543232 668998887
No 335
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=21.81 E-value=2.8e+02 Score=22.79 Aligned_cols=74 Identities=11% Similarity=0.226 Sum_probs=48.0
Q ss_pred ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCCCccccCCCCCCCCcceEEEcCCCC----
Q psy16454 34 DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRD---- 109 (304)
Q Consensus 34 ~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~---- 109 (304)
.+.-|.+++++ +.|.+.++|.+.++...+.+....|.+....+ ..++.+++|||--+.-
T Consensus 36 ~l~PVlF~rdK----------~I~qs~e~ai~~lE~e~KlWreteI~I~~g~p-------~VNE~TkkIYICPFTGKVF~ 98 (238)
T PF10915_consen 36 NLQPVLFVRDK----------IIFQSAEDAIRILEEEGKLWRETEIKIQSGKP-------SVNEQTKKIYICPFTGKVFG 98 (238)
T ss_pred CCCceeeecch----------hhccCHHHHHHHHHHhcchheeeeEEEecCCc-------ccccccceEEEcCCcCcccc
Confidence 45556666653 35889999999999887777666666554433 3334556777754421
Q ss_pred ----CCCHHHHHHHHhcCC
Q psy16454 110 ----DITEEDLKEYFGQFG 124 (304)
Q Consensus 110 ----~~~~~~l~~~F~~~G 124 (304)
.-.++.|.++.++|-
T Consensus 99 DNt~~nPQDAIYDWvSkCP 117 (238)
T PF10915_consen 99 DNTHPNPQDAIYDWVSKCP 117 (238)
T ss_pred CCCCCChHHHHHHHHhhCC
Confidence 124677899999885
No 336
>KOG2295|consensus
Probab=21.68 E-value=17 Score=34.56 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=40.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHH
Q psy16454 99 VKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKA 157 (304)
Q Consensus 99 ~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A 157 (304)
..+|+|.|++++++-++|..+++.+-.+..+.+.....-.+..-+..|+|+---....|
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a 289 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEA 289 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHH
Confidence 34689999999999999999999886665555443332233445678888644333333
No 337
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=21.34 E-value=2.5e+02 Score=18.47 Aligned_cols=49 Identities=10% Similarity=0.008 Sum_probs=30.1
Q ss_pred CHHHHHHHhhhCCc-eeEEEEEeCCCCCCcccEEEEEeCC---HHHHHHHHHhC
Q psy16454 21 SSETLKSHFEAWGD-VVDVVVMKDPQTKKSRGFGFITYSS---AHMVDDAQAAR 70 (304)
Q Consensus 21 t~~~l~~~F~~~G~-v~~v~i~~~~~~~~~kG~aFV~f~~---~e~a~~al~~~ 70 (304)
+-.++.+.|++++- +.+|.-.+.+. ....-.-||++.. ....+++++..
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~~~-~~~~~~f~id~~~~~~~~~~~~~l~~l 64 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPSRK-GLWEYEFFVDFEGHIDDPDVKEALEEL 64 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCC-CCceEEEEEEEECCCCCHHHHHHHHHH
Confidence 45778888988864 77775554432 2333467788874 45555666543
No 338
>KOG0156|consensus
Probab=21.34 E-value=2.1e+02 Score=27.37 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=48.0
Q ss_pred CccCeEEEcCCCCCC---CHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeee
Q psy16454 6 EHLRKLFIGGLDYRT---SSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVV 79 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~---t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i 79 (304)
-+..--+|+||+.=. ....|.++=++||+|-.+++=.. -.|..++.+.|++|+..+...+.+|+.
T Consensus 30 GP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 30 GPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 344555678886432 45667777789999987776432 367888999999999998888887775
No 339
>PRK05560 DNA gyrase subunit A; Validated
Probab=21.21 E-value=2.9e+02 Score=28.33 Aligned_cols=59 Identities=7% Similarity=0.200 Sum_probs=34.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhC---CceeEEEEEeCCCCCCcccEEEE-EeCCHHHHHHHHH
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAW---GDVVDVVVMKDPQTKKSRGFGFI-TYSSAHMVDDAQA 68 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~~~~kG~aFV-~f~~~e~a~~al~ 68 (304)
.++|.|..||+.++.+.+.+.+... ..+..+.-++|..+ ..++-|| +++...+++..++
T Consensus 251 ~~~i~iteiP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~--~~~~~~~i~~~~~~~~~~~~~ 313 (805)
T PRK05560 251 REAIIVTEIPYQVNKARLIEKIAELVKEKKIEGISDLRDESD--RDGMRIVIELKRDAVPEVVLN 313 (805)
T ss_pred CcEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccchhcCC--CCceEEEEEECCCCCHHHHHH
Confidence 4579999999999998888777543 23333433444322 2344454 4454444554444
No 340
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=20.98 E-value=38 Score=22.15 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=17.8
Q ss_pred CCCCCCCHHHHHHHhhhCCcee
Q psy16454 15 GLDYRTSSETLKSHFEAWGDVV 36 (304)
Q Consensus 15 nLp~~~t~~~l~~~F~~~G~v~ 36 (304)
.|..++|++||.+.+..+..+.
T Consensus 5 Dls~~lTeEEl~~~i~~L~~~~ 26 (61)
T TIGR01639 5 DLSKKLSKEELNELINSLDEIP 26 (61)
T ss_pred HHhHHccHHHHHHHHHhhcCCC
Confidence 4677889999999998887654
No 341
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=20.93 E-value=2.9e+02 Score=18.94 Aligned_cols=67 Identities=10% Similarity=0.029 Sum_probs=44.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCc-eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeee
Q psy16454 10 KLFIGGLDYRTSSETLKSHFEAWGD-VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVV 79 (304)
Q Consensus 10 ~v~V~nLp~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i 79 (304)
.|+|.|-|--+ +.+..+|+.-|- |.++.+-...+.+.++ +.++...+.+..++..++..+.++-..+
T Consensus 6 si~v~n~pGVL--~Ri~~lf~rRgfNI~Sl~vg~te~~~~sr-iti~~~~~~~~i~qi~kQL~KLidV~~V 73 (76)
T PRK06737 6 SLVIHNDPSVL--LRISGIFARRGYYISSLNLNERDTSGVSE-MKLTAVCTENEATLLVSQLKKLINVLQV 73 (76)
T ss_pred EEEEecCCCHH--HHHHHHHhccCcceEEEEecccCCCCeeE-EEEEEECCHHHHHHHHHHHhCCcCEEEE
Confidence 45566655433 457788887774 8877776554445555 6667678999999888887766655443
No 342
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=20.86 E-value=1.3e+02 Score=19.97 Aligned_cols=34 Identities=35% Similarity=0.572 Sum_probs=23.7
Q ss_pred CCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEE
Q psy16454 111 ITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFV 146 (304)
Q Consensus 111 ~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV 146 (304)
.-+.+|..+|-+--.|+++.|+..+.- .+|-+||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri--~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRI--RKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEee--eCCceeE
Confidence 346678888888888999998876543 3445555
No 343
>KOG1150|consensus
Probab=20.81 E-value=99 Score=25.63 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=21.0
Q ss_pred cCCCCCCCHHHHHHHhhhCCceeEEEEEeCCC
Q psy16454 14 GGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQ 45 (304)
Q Consensus 14 ~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~ 45 (304)
-.|.++++.++|+..|.+. +|.|.+|++
T Consensus 59 LqIdpev~~edikkryRkl----SilVHPDKN 86 (250)
T KOG1150|consen 59 LQIDPEVTDEDIKKRYRKL----SILVHPDKN 86 (250)
T ss_pred HhcCCCCCHHHHHHHHHhh----heeecCCCC
Confidence 3567789999999999876 466666654
No 344
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.75 E-value=4.5e+02 Score=21.11 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=43.9
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC
Q psy16454 2 TKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR 70 (304)
Q Consensus 2 ~~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~ 70 (304)
.+.|....++.| +|+..+.++-|.++-+-+|.|.+. .+. .-.+.|-+.+..++||+..
T Consensus 106 v~~p~~~~~iRv-~l~~~i~~erl~ei~E~~gvI~Ef---ee~-------~~V~I~Gdke~Ik~aLKe~ 163 (169)
T PF09869_consen 106 VKAPPGFETIRV-KLKKPIQEERLQEISEWHGVIFEF---EED-------DKVVIEGDKERIKKALKEF 163 (169)
T ss_pred cCCCCCceeEEE-ecCccchHHHHHHHHHHhceeEEe---cCC-------cEEEEeccHHHHHHHHHHH
Confidence 345556666777 599999999999999999887665 222 2367788999999998764
No 345
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=20.52 E-value=3.2e+02 Score=19.29 Aligned_cols=43 Identities=12% Similarity=0.069 Sum_probs=30.7
Q ss_pred HHHHHHHhhhCCc-eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH
Q psy16454 22 SETLKSHFEAWGD-VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68 (304)
Q Consensus 22 ~~~l~~~F~~~G~-v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~ 68 (304)
.+.++++++++|- ++++.+..-+. --...+++.|.+.|.++.-
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~y----D~v~i~eaPD~~~a~~~~l 65 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEY----DFVVIVEAPDDETAAAASL 65 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCC----CEEEEEEcCCHHHHHHHHH
Confidence 4557788888874 77777776443 3478889999888877653
No 346
>COG3797 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.43 E-value=1.5e+02 Score=23.98 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=31.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCC
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYND 150 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~ 150 (304)
...++.|.-+-..++-|++..+++++..-++|.+.-+. -+|.|.+
T Consensus 98 ~~~~~~v~f~~ep~dvd~v~~l~~~~~~~eev~~~g~~--------L~v~f~~ 142 (178)
T COG3797 98 EPARVCVRFYREPLDVDEVEALADKAGGDEEVLAVGDD--------LWVDFSD 142 (178)
T ss_pred CcceEEEEEEcCCCcHHHHHHHHHHhCCCceEEecCCe--------eEEEecC
Confidence 34566666666777888999999998877777665332 4666654
No 347
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=20.22 E-value=2.7e+02 Score=24.48 Aligned_cols=114 Identities=11% Similarity=0.111 Sum_probs=57.7
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhCCc-eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCCC
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAWGD-VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAVP 86 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~~ 86 (304)
.++|+..+..++.+.+.+++-+++++- -.++.++.-+... .+.+.+++-+||+.....=.-+.|=|..-..
T Consensus 74 ttKvw~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~--------~~~~~~etw~alE~l~~~G~ir~IGVSNF~~ 145 (280)
T COG0656 74 TTKVWPSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN--------KYVVIEETWKALEELVDEGLIRAIGVSNFGV 145 (280)
T ss_pred EeecCCccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc--------cCccHHHHHHHHHHHHhcCCccEEEeeCCCH
Confidence 355666777777788888888888876 5677777655321 2222566666766642222222222222111
Q ss_pred cc---ccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy16454 87 RT---EINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALV 132 (304)
Q Consensus 87 ~~---~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~ 132 (304)
.. ...........++|- ++......+|.+++++.+......-+
T Consensus 146 ~~L~~l~~~~~~~p~~NQIe---~hp~~~q~el~~~~~~~gI~v~AysP 191 (280)
T COG0656 146 EHLEELLSLAKVKPAVNQIE---YHPYLRQPELLPFCQRHGIAVEAYSP 191 (280)
T ss_pred HHHHHHHHhcCCCCceEEEE---eccCCCcHHHHHHHHHcCCEEEEECC
Confidence 10 000011111122232 23334555588888888766555443
No 348
>PF05336 DUF718: Domain of unknown function (DUF718); InterPro: IPR008000 Mutarotases are enzymes which interconvert the alpha and beta stereoisomers of monosaccharides, enhancing the rate of their metabolism. Proteins in this entry are homologues of the rhamnose mutarotase YiiL (P32156 from SWISSPROT) from Escherichia coli, and are often encoded in rhamnose utilisation operons. YiiL is an enzyme which interconverts the alpha and beta stereoisomers of the pyranose form of L-rhamnose []. It is not required for growth on rhamnose, but allows cells to utilise this carbon source more efficiently [].The structure of YiiL is distinct from other mutarotases, forming an asymmetric dimmer stabilised by an intermolecular beta-sheet, hydrophobic interactions and a salt bridge [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0019299 rhamnose metabolic process, 0005737 cytoplasm; PDB: 2QLX_A 2QLW_B 1X8D_B.
Probab=20.17 E-value=3.5e+02 Score=19.67 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHH
Q psy16454 113 EEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC 158 (304)
Q Consensus 113 ~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~ 158 (304)
+.+|.+.+... .|.+..|..+..++. =|++++..+.+.+.+++
T Consensus 25 WPEv~~~l~~~-Gi~~ysIf~~g~~~~--LF~~~E~~~~~~~~~~l 67 (106)
T PF05336_consen 25 WPEVLAALREA-GIRNYSIFRDGDTGR--LFMYMETDDFDADMAAL 67 (106)
T ss_dssp -HHHHHHHHHC-TEEEEEEEEETTTTE--EEEEEEECT-CHHHHHG
T ss_pred CHHHHHHHHHC-CCeEEEEEEeCCCCE--EEEEEEecChhhHHHHc
Confidence 45666667676 578888888765433 38888888844444444
No 349
>PF02676 TYW3: Methyltransferase TYW3; InterPro: IPR003827 The methyltransferase TYW3 (tRNA-yW- synthesising protein 3) has been identified in yeast to be involved in wybutosine (yW) biosynthesis []. yW is a complexly modified guanosine residue that contains a tricyclic base and is found at the 3'-position adjacent the anticodon of phenylalanine tRNA. TYW3 is an N-4 methylase that methylates yW-86 to yield yW-72 in an Ado-Met-dependent manner [].; PDB: 1TLJ_A 2DVK_A 2IT3_B 2IT2_A 2DRV_A 2QG3_B.
Probab=20.09 E-value=5.1e+02 Score=21.51 Aligned_cols=56 Identities=7% Similarity=-0.020 Sum_probs=36.1
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCcee---------EEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVV---------DVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~---------~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~ 69 (304)
...+.||+..-| ++.++|.+.+...-.-. .+.+...+. ...|.-.+.++|++.++.
T Consensus 65 ~~~~wl~~sH~~--~~~~ev~~~~~~~~~~~~~~~~~~~~~l~lkfep~------IlHV~c~~l~~A~~Ll~~ 129 (205)
T PF02676_consen 65 GGGKWLFVSHDP--VTVEEVLEALRKSDGDSASSQSSENRLLWLKFEPP------ILHVQCRDLESAQKLLKI 129 (205)
T ss_dssp CC-EEEEEESS-----HHHHHHHHTT-SSSE----------EEEEEE--------EEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEEECCC--CCHHHHHHHHccccccccccccchhheEEEEecCc------EEEEEeCCHHHHHHHHHH
Confidence 466779998866 78888998887653321 144544433 688899999999998875
No 350
>KOG3702|consensus
Probab=20.02 E-value=1e+02 Score=30.18 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=51.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCee
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKK 169 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~ 169 (304)
.+||+.+-....+..-+..+++.+..++...++..-...-...-++.+|..+.+++.|....+..+..+.
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s~p~k~fa~~~ 581 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKSLPNKKFASKC 581 (681)
T ss_pred CceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhccccccccccc
Confidence 3788888777778888888888888888877776655555555799999999998777555444444433
Done!