Query psy16454
Match_columns 304
No_of_seqs 354 out of 2670
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 21:44:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 2.4E-39 8.3E-44 268.3 21.2 183 2-184 7-189 (196)
2 4f02_A Polyadenylate-binding p 100.0 5.1E-36 1.7E-40 252.0 18.7 173 5-183 12-186 (213)
3 2cjk_A Nuclear polyadenylated 100.0 1.2E-36 4.2E-41 245.6 13.9 166 6-178 1-166 (167)
4 2qfj_A FBP-interacting repress 100.0 3E-35 1E-39 247.3 16.3 175 6-180 26-207 (216)
5 3md3_A Nuclear and cytoplasmic 100.0 2.1E-34 7E-39 232.0 19.9 163 9-176 1-165 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 2.6E-34 8.8E-39 232.1 19.9 163 7-175 2-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 8.9E-34 3E-38 228.5 21.3 163 7-175 1-167 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 5.9E-33 2E-37 225.5 19.3 163 7-175 2-174 (175)
9 2g4b_A Splicing factor U2AF 65 100.0 1.1E-32 3.7E-37 223.5 19.0 158 6-175 2-171 (172)
10 2yh0_A Splicing factor U2AF 65 100.0 1.4E-33 4.7E-38 234.0 12.7 168 6-179 2-195 (198)
11 1fje_B Nucleolin RBD12, protei 100.0 2.5E-33 8.6E-38 228.1 10.8 165 4-178 9-174 (175)
12 3smz_A Protein raver-1, ribonu 100.0 4.7E-31 1.6E-35 231.1 20.1 171 6-180 93-266 (284)
13 2ghp_A U4/U6 snRNA-associated 100.0 1.1E-31 3.7E-36 236.1 15.9 172 6-178 115-291 (292)
14 3tyt_A Heterogeneous nuclear r 100.0 4.2E-31 1.4E-35 220.3 17.0 162 7-175 3-204 (205)
15 2adc_A Polypyrimidine tract-bi 100.0 1.5E-30 5.2E-35 221.0 19.5 164 5-178 31-228 (229)
16 3pgw_A U1-A; protein-RNA compl 100.0 2E-30 6.7E-35 226.9 20.5 166 3-176 4-281 (282)
17 2ghp_A U4/U6 snRNA-associated 100.0 1.3E-30 4.4E-35 229.2 16.6 163 3-181 36-200 (292)
18 1qm9_A Polypyrimidine tract-bi 100.0 2.1E-30 7.1E-35 215.1 15.4 162 7-178 2-197 (198)
19 3sde_A Paraspeckle component 1 100.0 1E-29 3.5E-34 220.0 18.6 157 4-179 18-180 (261)
20 3smz_A Protein raver-1, ribonu 100.0 2.9E-29 1E-33 219.7 20.1 155 6-179 20-176 (284)
21 2kn4_A Immunoglobulin G-bindin 99.9 3.4E-25 1.2E-29 177.1 10.5 141 37-179 2-151 (158)
22 4f25_A Polyadenylate-binding p 99.9 1.9E-22 6.4E-27 152.5 9.2 109 5-115 2-113 (115)
23 2i2y_A Fusion protein consists 99.8 5.7E-21 1.9E-25 151.2 11.9 127 46-178 9-148 (150)
24 3pgw_S U1-70K; protein-RNA com 99.8 2.9E-21 9.8E-26 178.0 10.4 84 96-179 99-183 (437)
25 4fxv_A ELAV-like protein 1; RN 99.8 1.2E-20 4.1E-25 138.5 11.1 80 98-177 18-98 (99)
26 3s8s_A Histone-lysine N-methyl 99.8 4.1E-20 1.4E-24 138.2 11.8 86 97-182 4-90 (110)
27 3q2s_C Cleavage and polyadenyl 99.8 2.8E-20 9.5E-25 157.3 10.9 83 98-180 67-152 (229)
28 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.3E-20 1.1E-24 147.7 10.5 84 96-179 36-120 (156)
29 2dgs_A DAZ-associated protein 99.8 6.3E-20 2.2E-24 134.7 10.6 85 96-180 7-91 (99)
30 4fxv_A ELAV-like protein 1; RN 99.8 8.8E-20 3E-24 133.9 10.1 80 7-86 18-98 (99)
31 2lea_A Serine/arginine-rich sp 99.8 1.8E-20 6E-25 145.6 6.6 122 52-180 6-129 (135)
32 2lxi_A RNA-binding protein 10; 99.8 9.4E-21 3.2E-25 136.9 4.5 82 99-180 1-85 (91)
33 2lxi_A RNA-binding protein 10; 99.8 2.9E-20 9.8E-25 134.3 7.0 82 8-89 1-85 (91)
34 3s7r_A Heterogeneous nuclear r 99.8 1.9E-19 6.6E-24 128.8 11.2 81 95-175 7-87 (87)
35 2lkz_A RNA-binding protein 5; 99.8 4.2E-20 1.4E-24 134.2 7.6 82 96-177 6-94 (95)
36 2dgs_A DAZ-associated protein 99.8 3.3E-19 1.1E-23 130.8 11.8 89 3-91 5-93 (99)
37 1whw_A Hypothetical protein ri 99.8 1.7E-19 5.9E-24 132.3 10.3 85 97-181 6-91 (99)
38 2cqd_A RNA-binding region cont 99.8 3.4E-19 1.2E-23 134.7 12.2 87 93-179 11-97 (116)
39 2cqg_A TDP-43, TAR DNA-binding 99.8 2.7E-19 9.1E-24 132.3 11.1 86 95-181 11-96 (103)
40 2dh8_A DAZ-associated protein 99.8 1.1E-19 3.6E-24 135.0 8.9 86 95-180 12-97 (105)
41 3s7r_A Heterogeneous nuclear r 99.8 1.7E-19 5.7E-24 129.1 9.6 83 2-84 5-87 (87)
42 2cpz_A CUG triplet repeat RNA- 99.8 2.1E-19 7.3E-24 135.6 10.5 87 94-180 20-107 (115)
43 2dnm_A SRP46 splicing factor; 99.8 1.4E-19 4.9E-24 133.8 9.3 85 95-179 9-94 (103)
44 1x5u_A Splicing factor 3B subu 99.8 2.2E-19 7.7E-24 133.2 10.4 87 94-180 10-97 (105)
45 2hgn_A Heterogeneous nuclear r 99.8 1.2E-20 4.1E-25 146.6 3.5 123 51-179 2-124 (139)
46 2lkz_A RNA-binding protein 5; 99.8 4.7E-20 1.6E-24 134.0 6.3 84 3-86 4-94 (95)
47 2cq4_A RNA binding motif prote 99.8 2.6E-19 8.9E-24 134.9 10.5 86 97-182 23-108 (114)
48 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.3E-19 7.8E-24 144.2 10.8 88 94-181 67-155 (165)
49 1x4h_A RNA-binding protein 28; 99.8 2.4E-19 8E-24 134.4 10.1 87 94-180 10-103 (111)
50 2dng_A Eukaryotic translation 99.8 2.4E-19 8.3E-24 132.5 10.0 86 93-179 9-94 (103)
51 2dnz_A Probable RNA-binding pr 99.8 2.9E-19 1E-23 130.0 10.2 83 97-179 3-86 (95)
52 2dh8_A DAZ-associated protein 99.8 3.6E-19 1.2E-23 132.1 10.7 89 3-91 11-99 (105)
53 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.5E-19 1.5E-23 126.8 10.6 82 97-178 4-86 (87)
54 1u6f_A Tcubp1, RNA-binding pro 99.8 6.3E-19 2.2E-23 137.5 12.2 85 95-179 38-123 (139)
55 1x4b_A Heterogeneous nuclear r 99.8 1.3E-19 4.4E-24 137.0 7.7 85 96-180 24-108 (116)
56 3s8s_A Histone-lysine N-methyl 99.8 4.1E-19 1.4E-23 132.8 10.2 83 5-87 3-86 (110)
57 1wi8_A EIF-4B, eukaryotic tran 99.8 2.8E-19 9.7E-24 132.4 9.1 86 94-180 10-96 (104)
58 2cqd_A RNA-binding region cont 99.8 5.6E-19 1.9E-23 133.5 10.8 87 3-89 12-98 (116)
59 1x5s_A Cold-inducible RNA-bind 99.8 2.3E-19 8E-24 132.3 8.5 85 96-180 9-94 (102)
60 1s79_A Lupus LA protein; RRM, 99.8 4.8E-19 1.6E-23 130.8 10.0 83 97-180 9-91 (103)
61 2cqg_A TDP-43, TAR DNA-binding 99.8 9.7E-19 3.3E-23 129.3 11.6 89 3-92 10-98 (103)
62 3lqv_A PRE-mRNA branch site pr 99.8 2.5E-19 8.5E-24 135.2 8.6 106 3-125 3-109 (115)
63 2cqc_A Arginine/serine-rich sp 99.8 1.1E-18 3.9E-23 126.8 11.8 84 94-177 10-94 (95)
64 3ns6_A Eukaryotic translation 99.8 2.6E-19 8.9E-24 131.7 8.4 85 98-182 5-97 (100)
65 2rs2_A Musashi-1, RNA-binding 99.8 3.8E-19 1.3E-23 132.9 9.3 88 2-89 19-106 (109)
66 2cq0_A Eukaryotic translation 99.8 3.8E-19 1.3E-23 131.5 9.3 85 95-179 11-96 (103)
67 2hgl_A HNRPF protein, heteroge 99.8 3.7E-19 1.3E-23 137.8 9.5 85 96-181 41-128 (136)
68 2cpy_A RNA-binding protein 12; 99.8 4.8E-19 1.6E-23 133.5 9.9 87 96-183 12-99 (114)
69 3md1_A Nuclear and cytoplasmic 99.8 6.7E-19 2.3E-23 124.8 10.0 80 100-179 2-82 (83)
70 1x5t_A Splicing factor 3B subu 99.8 2.5E-19 8.6E-24 130.6 8.0 83 97-179 3-87 (96)
71 1x4h_A RNA-binding protein 28; 99.8 6.4E-19 2.2E-23 132.0 10.4 90 2-91 9-105 (111)
72 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.4E-19 8.3E-24 132.3 7.8 85 96-180 9-94 (102)
73 2do4_A Squamous cell carcinoma 99.8 1.1E-18 3.9E-23 128.2 11.4 85 94-179 12-97 (100)
74 1whw_A Hypothetical protein ri 99.8 8.7E-19 3E-23 128.5 10.7 89 3-91 3-92 (99)
75 2dgo_A Cytotoxic granule-assoc 99.8 1.8E-18 6.1E-23 130.4 12.7 88 94-181 10-98 (115)
76 2cph_A RNA binding motif prote 99.8 6.5E-19 2.2E-23 131.1 10.0 87 94-180 10-99 (107)
77 2dhg_A TRNA selenocysteine ass 99.8 5.5E-19 1.9E-23 130.8 9.6 84 96-180 6-92 (104)
78 3ex7_B RNA-binding protein 8A; 99.8 4E-19 1.4E-23 136.3 9.0 87 94-180 17-104 (126)
79 2d9p_A Polyadenylate-binding p 99.8 6.4E-19 2.2E-23 130.3 9.7 85 94-180 10-95 (103)
80 3p5t_L Cleavage and polyadenyl 99.8 1.9E-19 6.5E-24 129.8 6.7 82 100-181 2-86 (90)
81 2rs2_A Musashi-1, RNA-binding 99.8 4E-19 1.4E-23 132.8 8.6 86 95-180 21-106 (109)
82 1wez_A HnRNP H', FTP-3, hetero 99.8 2.1E-19 7.1E-24 132.6 6.9 81 96-178 12-92 (102)
83 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1E-18 3.5E-23 124.4 10.2 80 97-176 5-85 (85)
84 2cpf_A RNA binding motif prote 99.8 5E-19 1.7E-23 129.6 8.8 84 97-180 3-90 (98)
85 2dnz_A Probable RNA-binding pr 99.8 1.7E-18 5.7E-23 126.0 11.5 86 5-90 2-88 (95)
86 2jrs_A RNA-binding protein 39; 99.8 1.3E-18 4.3E-23 129.8 11.0 86 93-178 20-106 (108)
87 2dnm_A SRP46 splicing factor; 99.8 8.6E-19 3E-23 129.5 9.9 87 3-89 8-95 (103)
88 2cpz_A CUG triplet repeat RNA- 99.8 1.4E-18 4.7E-23 131.1 11.2 88 4-91 21-109 (115)
89 1p1t_A Cleavage stimulation fa 99.8 4.7E-19 1.6E-23 131.2 8.5 90 96-185 5-95 (104)
90 1p27_B RNA-binding protein 8A; 99.8 1.2E-18 4E-23 129.5 10.5 85 95-179 19-104 (106)
91 2dgp_A Bruno-like 4, RNA bindi 99.8 5.2E-19 1.8E-23 131.4 8.6 86 94-179 8-97 (106)
92 2dgo_A Cytotoxic granule-assoc 99.8 2E-18 6.8E-23 130.2 11.9 89 3-91 10-99 (115)
93 2cq0_A Eukaryotic translation 99.8 1E-18 3.5E-23 129.2 9.9 88 3-90 10-98 (103)
94 1s79_A Lupus LA protein; RRM, 99.8 6E-19 2E-23 130.2 8.5 82 4-86 7-88 (103)
95 2e5h_A Zinc finger CCHC-type a 99.8 1.5E-18 5E-23 126.0 10.4 81 96-176 13-94 (94)
96 2dnn_A RNA-binding protein 12; 99.8 1.1E-18 3.7E-23 130.0 9.8 82 97-180 14-95 (109)
97 2dhg_A TRNA selenocysteine ass 99.8 3.4E-18 1.2E-22 126.5 12.5 89 3-92 4-95 (104)
98 2cpe_A RNA-binding protein EWS 99.8 7.7E-19 2.6E-23 132.1 9.0 86 95-180 11-105 (113)
99 2fy1_A RNA-binding motif prote 99.8 1.4E-18 4.8E-23 131.2 10.4 83 96-179 4-87 (116)
100 2x1f_A MRNA 3'-END-processing 99.8 1.5E-18 5E-23 126.6 10.0 83 99-181 2-85 (96)
101 2mss_A Protein (musashi1); RNA 99.8 4.8E-19 1.6E-23 123.1 7.1 75 101-175 1-75 (75)
102 2la6_A RNA-binding protein FUS 99.8 2.8E-18 9.7E-23 125.8 11.6 84 93-176 7-99 (99)
103 1x5u_A Splicing factor 3B subu 99.8 1.5E-18 5.1E-23 128.7 10.2 88 3-90 10-98 (105)
104 2dnh_A Bruno-like 5, RNA bindi 99.8 2E-18 6.7E-23 128.0 10.8 83 97-180 13-99 (105)
105 1wg5_A Heterogeneous nuclear r 99.8 8.9E-19 3E-23 129.7 8.9 83 96-179 12-95 (104)
106 1sjq_A Polypyrimidine tract-bi 99.8 1.6E-18 5.4E-23 127.4 10.0 82 4-91 12-96 (105)
107 2dng_A Eukaryotic translation 99.8 1.9E-18 6.5E-23 127.7 10.5 87 3-90 10-96 (103)
108 1wez_A HnRNP H', FTP-3, hetero 99.8 6.3E-19 2.2E-23 130.0 7.7 84 3-88 10-93 (102)
109 2db1_A Heterogeneous nuclear r 99.8 2.6E-18 8.8E-23 130.2 11.1 84 96-180 14-100 (118)
110 3ucg_A Polyadenylate-binding p 99.8 1.9E-18 6.4E-23 124.1 9.9 81 98-178 5-85 (89)
111 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.6E-18 5.5E-23 123.9 9.4 82 6-87 4-86 (87)
112 4f25_A Polyadenylate-binding p 99.8 1.3E-18 4.6E-23 131.2 9.4 80 99-180 5-85 (115)
113 2ywk_A Putative RNA-binding pr 99.8 2.8E-18 9.6E-23 124.8 10.8 83 94-177 11-94 (95)
114 1x5s_A Cold-inducible RNA-bind 99.8 1.7E-18 5.9E-23 127.7 9.7 87 4-90 8-95 (102)
115 1oo0_B CG8781-PA, drosophila Y 99.8 1.4E-18 4.9E-23 129.9 9.4 86 94-179 21-107 (110)
116 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.7E-18 9.3E-23 126.8 10.8 85 94-180 10-95 (103)
117 2cq3_A RNA-binding protein 9; 99.8 2.9E-18 9.8E-23 126.7 10.8 85 94-180 10-95 (103)
118 2cqc_A Arginine/serine-rich sp 99.8 2.3E-18 7.8E-23 125.2 10.0 84 3-86 10-94 (95)
119 1x4b_A Heterogeneous nuclear r 99.8 7.2E-19 2.5E-23 132.9 7.6 86 6-91 25-110 (116)
120 2jrs_A RNA-binding protein 39; 99.8 2.4E-18 8.4E-23 128.2 10.4 87 2-88 20-107 (108)
121 1wi8_A EIF-4B, eukaryotic tran 99.8 1.6E-18 5.4E-23 128.4 9.2 86 4-90 11-97 (104)
122 1x5t_A Splicing factor 3B subu 99.8 1.7E-18 5.9E-23 126.2 9.2 86 5-90 2-89 (96)
123 3md1_A Nuclear and cytoplasmic 99.8 3E-18 1E-22 121.3 10.1 81 8-88 1-82 (83)
124 2kxn_B Transformer-2 protein h 99.8 1.7E-18 5.8E-23 133.2 9.4 85 95-179 42-127 (129)
125 2dgw_A Probable RNA-binding pr 99.8 2.7E-18 9.1E-23 123.9 10.0 82 96-179 7-88 (91)
126 2cph_A RNA binding motif prote 99.8 3.7E-18 1.3E-22 127.0 11.0 88 3-90 10-100 (107)
127 2cpf_A RNA binding motif prote 99.8 2.2E-18 7.7E-23 126.1 9.6 86 5-90 2-91 (98)
128 1wel_A RNA-binding protein 12; 99.8 1.1E-18 3.9E-23 133.4 8.3 85 96-180 22-106 (124)
129 2do4_A Squamous cell carcinoma 99.8 3.6E-18 1.2E-22 125.5 10.5 84 4-88 13-97 (100)
130 2div_A TRNA selenocysteine ass 99.8 2.8E-18 9.6E-23 125.8 9.8 83 96-178 6-94 (99)
131 2dgp_A Bruno-like 4, RNA bindi 99.8 2.7E-18 9.2E-23 127.5 9.8 87 3-89 8-98 (106)
132 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.9E-18 6.4E-23 127.5 8.8 88 4-91 8-96 (102)
133 2kxn_B Transformer-2 protein h 99.8 3.3E-18 1.1E-22 131.6 10.3 86 3-88 41-127 (129)
134 2hgm_A HNRPF protein, heteroge 99.8 1.6E-18 5.3E-23 132.2 8.4 81 97-179 40-122 (126)
135 2khc_A Testis-specific RNP-typ 99.8 3.2E-18 1.1E-22 129.6 10.0 83 94-176 35-118 (118)
136 2div_A TRNA selenocysteine ass 99.8 4E-18 1.4E-22 125.0 10.2 85 3-87 4-94 (99)
137 1iqt_A AUF1, heterogeneous nuc 99.8 6.8E-19 2.3E-23 122.2 5.7 75 101-175 1-75 (75)
138 2j76_E EIF-4B, EIF4B, eukaryot 99.8 6.1E-19 2.1E-23 129.7 5.7 85 93-178 13-98 (100)
139 1p27_B RNA-binding protein 8A; 99.8 3.4E-18 1.2E-22 126.9 9.9 84 5-88 20-104 (106)
140 3ucg_A Polyadenylate-binding p 99.8 2.5E-18 8.4E-23 123.5 8.8 82 6-87 4-85 (89)
141 2hvz_A Splicing factor, argini 99.8 1.6E-18 5.5E-23 127.6 8.0 96 9-109 1-101 (101)
142 3ulh_A THO complex subunit 4; 99.8 5.8E-18 2E-22 125.9 11.0 81 95-176 25-106 (107)
143 1wg5_A Heterogeneous nuclear r 99.8 3.4E-18 1.1E-22 126.6 9.6 84 4-88 11-95 (104)
144 2ywk_A Putative RNA-binding pr 99.8 4.7E-18 1.6E-22 123.6 10.2 82 3-85 11-93 (95)
145 2dha_A FLJ20171 protein; RRM d 99.8 1.8E-18 6.1E-23 131.5 8.2 82 98-180 22-107 (123)
146 2d9p_A Polyadenylate-binding p 99.8 5.9E-18 2E-22 125.0 10.8 86 3-90 10-96 (103)
147 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.7E-18 6E-23 120.8 7.5 76 100-175 1-76 (77)
148 3n9u_C Cleavage and polyadenyl 99.8 5.7E-18 2E-22 134.5 11.3 82 98-179 54-138 (156)
149 1x4a_A Splicing factor, argini 99.8 5.7E-18 2E-22 126.4 10.7 83 93-178 16-99 (109)
150 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.4E-18 1.2E-22 121.7 9.0 81 4-84 3-84 (85)
151 3p5t_L Cleavage and polyadenyl 99.8 1.4E-18 4.6E-23 125.2 6.9 81 9-89 2-85 (90)
152 2cqp_A RNA-binding protein 12; 99.8 2.4E-18 8.4E-23 125.9 8.3 83 96-178 12-95 (98)
153 2e5h_A Zinc finger CCHC-type a 99.8 3.8E-18 1.3E-22 123.8 9.3 81 4-84 12-93 (94)
154 1sjq_A Polypyrimidine tract-bi 99.7 2.2E-18 7.4E-23 126.7 7.8 78 97-180 14-94 (105)
155 2cpe_A RNA-binding protein EWS 99.7 5.1E-18 1.7E-22 127.5 10.1 88 3-90 10-106 (113)
156 2mss_A Protein (musashi1); RNA 99.7 1.9E-18 6.5E-23 120.0 7.1 75 10-84 1-75 (75)
157 2kt5_A RNA and export factor-b 99.7 1.5E-17 5E-22 127.2 12.7 85 95-180 31-116 (124)
158 2dnh_A Bruno-like 5, RNA bindi 99.7 8.8E-18 3E-22 124.5 11.2 85 5-90 12-100 (105)
159 2hgm_A HNRPF protein, heteroge 99.7 1.9E-18 6.4E-23 131.8 7.6 83 3-87 37-121 (126)
160 2cq3_A RNA-binding protein 9; 99.7 1.3E-17 4.6E-22 123.1 12.0 87 3-91 10-97 (103)
161 2ek1_A RNA-binding protein 12; 99.7 1.9E-18 6.6E-23 125.7 7.3 80 98-177 14-94 (95)
162 2cpy_A RNA-binding protein 12; 99.7 9.1E-19 3.1E-23 131.9 5.7 84 4-88 11-95 (114)
163 2fy1_A RNA-binding motif prote 99.7 1.1E-17 3.8E-22 126.3 11.7 85 4-89 3-88 (116)
164 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.8E-18 6.3E-23 120.7 6.9 76 9-84 1-76 (77)
165 2cqi_A Nucleolysin TIAR; RNA r 99.7 1E-17 3.4E-22 123.8 11.1 86 3-90 10-96 (103)
166 4a8x_A RNA-binding protein wit 99.7 4.4E-18 1.5E-22 121.9 8.8 81 98-178 3-85 (88)
167 2la6_A RNA-binding protein FUS 99.7 8.4E-18 2.9E-22 123.3 10.5 83 2-84 7-98 (99)
168 2dgv_A HnRNP M, heterogeneous 99.7 9.1E-18 3.1E-22 121.3 10.3 82 96-179 5-87 (92)
169 2do0_A HnRNP M, heterogeneous 99.7 1.5E-17 5.2E-22 125.1 12.0 82 96-178 12-94 (114)
170 2lmi_A GRSF-1, G-rich sequence 99.7 2.6E-18 9E-23 127.9 7.5 85 96-181 8-95 (107)
171 2cq4_A RNA binding motif prote 99.7 8.9E-19 3E-23 132.0 4.9 85 5-89 22-106 (114)
172 2x1f_A MRNA 3'-END-processing 99.7 8.2E-18 2.8E-22 122.6 9.9 84 7-90 1-85 (96)
173 2xs2_A Deleted in azoospermia- 99.7 3E-18 1E-22 126.4 7.5 84 96-181 6-89 (102)
174 1x4e_A RNA binding motif, sing 99.7 3.5E-18 1.2E-22 121.7 7.6 81 5-85 2-83 (85)
175 2dgw_A Probable RNA-binding pr 99.7 7.3E-18 2.5E-22 121.6 9.4 84 3-88 5-88 (91)
176 2jwn_A Embryonic polyadenylate 99.7 4E-18 1.4E-22 130.3 8.4 81 98-178 35-115 (124)
177 1iqt_A AUF1, heterogeneous nuc 99.7 1.9E-18 6.6E-23 120.0 6.0 75 10-84 1-75 (75)
178 2dgx_A KIAA0430 protein; RRM d 99.7 9E-18 3.1E-22 122.4 9.8 80 97-179 7-91 (96)
179 2do0_A HnRNP M, heterogeneous 99.7 1.9E-17 6.4E-22 124.6 11.8 84 3-87 10-94 (114)
180 1u6f_A Tcubp1, RNA-binding pro 99.7 7E-18 2.4E-22 131.6 9.7 88 3-90 37-125 (139)
181 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.5E-18 1.2E-22 125.6 7.5 84 4-88 15-99 (100)
182 2dgv_A HnRNP M, heterogeneous 99.7 2E-17 7E-22 119.4 11.4 85 3-89 3-88 (92)
183 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.1E-17 3.7E-22 133.1 10.9 84 5-88 36-120 (156)
184 1oo0_B CG8781-PA, drosophila Y 99.7 6.7E-18 2.3E-22 126.3 9.1 85 4-88 22-107 (110)
185 1x4e_A RNA binding motif, sing 99.7 1.8E-18 6E-23 123.2 5.6 80 97-176 3-83 (85)
186 2dnn_A RNA-binding protein 12; 99.7 2.8E-18 9.5E-23 127.8 6.6 80 6-87 14-93 (109)
187 2m2b_A RNA-binding protein 10; 99.7 2.4E-18 8.2E-23 132.9 6.4 86 93-179 17-109 (131)
188 1p1t_A Cleavage stimulation fa 99.7 3.2E-18 1.1E-22 126.6 6.8 88 2-89 2-90 (104)
189 3ns6_A Eukaryotic translation 99.7 1.5E-18 5.3E-23 127.5 5.0 84 5-88 3-94 (100)
190 2cpx_A Hypothetical protein FL 99.7 1.7E-18 5.9E-23 130.5 5.4 87 94-180 20-107 (115)
191 2cq1_A PTB-like protein L; RRM 99.7 1.3E-17 4.3E-22 122.4 9.8 80 95-180 11-93 (101)
192 2dis_A Unnamed protein product 99.7 1.1E-17 3.7E-22 124.9 9.6 84 98-181 7-95 (109)
193 2hgl_A HNRPF protein, heteroge 99.7 2.5E-18 8.6E-23 133.1 6.3 84 3-87 39-125 (136)
194 3ex7_B RNA-binding protein 8A; 99.7 8.8E-18 3E-22 128.7 9.2 86 4-89 18-104 (126)
195 2dis_A Unnamed protein product 99.7 1.2E-17 4.3E-22 124.5 9.8 86 5-90 5-95 (109)
196 1x4c_A Splicing factor, argini 99.7 1.4E-17 4.8E-22 124.1 9.9 77 96-179 12-94 (108)
197 3r27_A HnRNP L, heterogeneous 99.7 1.3E-17 4.3E-22 121.3 9.4 79 94-178 16-97 (100)
198 2db1_A Heterogeneous nuclear r 99.7 3E-18 1E-22 129.8 6.3 83 4-87 13-98 (118)
199 2xs2_A Deleted in azoospermia- 99.7 2.3E-18 8E-23 127.0 5.6 86 2-89 3-88 (102)
200 3ulh_A THO complex subunit 4; 99.7 1.5E-17 5.1E-22 123.7 9.9 81 4-85 25-106 (107)
201 2wbr_A GW182, gawky, LD47780P; 99.7 1.4E-17 4.8E-22 117.0 9.1 73 98-176 6-79 (89)
202 2dgu_A Heterogeneous nuclear r 99.7 1.9E-17 6.5E-22 122.3 10.3 77 96-180 8-85 (103)
203 2ad9_A Polypyrimidine tract-bi 99.7 1.2E-17 4.2E-22 125.6 9.4 79 96-180 28-109 (119)
204 1x4d_A Matrin 3; structural ge 99.7 7.6E-18 2.6E-22 123.6 8.0 79 97-181 13-95 (102)
205 2khc_A Testis-specific RNP-typ 99.7 9E-18 3.1E-22 127.2 8.7 81 4-84 36-117 (118)
206 2fc8_A NCL protein; structure 99.7 1.2E-17 4.2E-22 123.0 8.9 83 95-180 11-94 (102)
207 2cq1_A PTB-like protein L; RRM 99.7 2.6E-17 9.1E-22 120.7 10.5 82 4-91 11-95 (101)
208 2ad9_A Polypyrimidine tract-bi 99.7 1.4E-17 4.6E-22 125.4 9.1 82 4-91 27-111 (119)
209 1fj7_A Nucleolin RBD1, protein 99.7 1.3E-18 4.5E-23 128.1 3.5 83 96-179 14-96 (101)
210 2hgn_A Heterogeneous nuclear r 99.7 2.8E-18 9.7E-23 133.2 5.4 83 4-88 42-124 (139)
211 2dnq_A RNA-binding protein 4B; 99.7 2.2E-17 7.6E-22 118.8 9.7 77 96-180 5-82 (90)
212 2cpi_A CCR4-NOT transcription 99.7 8.3E-18 2.8E-22 126.0 7.7 83 97-179 13-102 (111)
213 2ek1_A RNA-binding protein 12; 99.7 5.7E-18 1.9E-22 123.1 6.6 81 5-85 12-93 (95)
214 1x5o_A RNA binding motif, sing 99.7 3.2E-17 1.1E-21 123.3 10.9 83 95-178 21-112 (114)
215 2err_A Ataxin-2-binding protei 99.7 1.5E-17 5.1E-22 124.1 9.0 85 92-178 22-107 (109)
216 1x4a_A Splicing factor, argini 99.7 3.8E-17 1.3E-21 121.9 11.2 83 4-89 18-101 (109)
217 2lmi_A GRSF-1, G-rich sequence 99.7 4.3E-18 1.5E-22 126.7 5.9 84 3-87 6-92 (107)
218 1wex_A Hypothetical protein (r 99.7 3.4E-17 1.2E-21 120.8 10.7 80 95-180 11-93 (104)
219 2dha_A FLJ20171 protein; RRM d 99.7 5E-18 1.7E-22 129.1 6.2 80 6-86 21-104 (123)
220 3n9u_C Cleavage and polyadenyl 99.7 1.6E-17 5.4E-22 131.9 9.2 81 7-87 54-137 (156)
221 1wex_A Hypothetical protein (r 99.7 5.3E-17 1.8E-21 119.8 11.4 81 4-90 11-94 (104)
222 2cqp_A RNA-binding protein 12; 99.7 8.1E-18 2.8E-22 123.1 7.0 83 5-87 12-95 (98)
223 4a8x_A RNA-binding protein wit 99.7 1.5E-17 5E-22 119.1 7.8 82 6-87 2-85 (88)
224 2jvr_A Nucleolar protein 3; RN 99.7 1.4E-17 4.9E-22 124.2 7.9 79 98-180 27-107 (111)
225 2fc9_A NCL protein; structure 99.7 1.8E-17 6.2E-22 121.9 8.4 81 95-179 11-92 (101)
226 2lea_A Serine/arginine-rich sp 99.7 1.1E-17 3.8E-22 129.7 7.5 87 3-89 42-129 (135)
227 2ki2_A SS-DNA binding protein 99.7 4.6E-18 1.6E-22 122.4 4.9 81 100-181 2-83 (90)
228 2dgx_A KIAA0430 protein; RRM d 99.7 3E-17 1E-21 119.6 9.2 83 4-89 5-92 (96)
229 3r27_A HnRNP L, heterogeneous 99.7 2.5E-17 8.5E-22 119.8 8.6 79 4-88 17-98 (100)
230 2m2b_A RNA-binding protein 10; 99.7 9.1E-18 3.1E-22 129.6 6.7 86 3-89 18-110 (131)
231 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4.6E-17 1.6E-21 126.9 10.8 82 94-175 58-140 (140)
232 1wel_A RNA-binding protein 12; 99.7 3.3E-18 1.1E-22 130.8 4.1 83 5-87 22-104 (124)
233 2jwn_A Embryonic polyadenylate 99.7 2.2E-17 7.7E-22 126.1 8.5 81 7-87 35-115 (124)
234 2a3j_A U1 small nuclear ribonu 99.7 4.4E-17 1.5E-21 124.6 9.9 84 96-182 26-114 (127)
235 2kt5_A RNA and export factor-b 99.7 5.1E-17 1.7E-21 124.1 10.2 85 4-89 31-116 (124)
236 2nlw_A Eukaryotic translation 99.7 2.8E-17 9.6E-22 121.8 8.3 82 96-179 12-101 (105)
237 2lcw_A RNA-binding protein FUS 99.5 8.3E-19 2.8E-23 132.5 0.0 85 96-180 4-97 (116)
238 2wbr_A GW182, gawky, LD47780P; 99.7 4E-17 1.4E-21 114.7 8.4 73 6-84 5-78 (89)
239 2dgt_A RNA-binding protein 30; 99.7 5.5E-17 1.9E-21 117.2 9.3 77 95-179 6-83 (92)
240 1fj7_A Nucleolin RBD1, protein 99.7 4.4E-18 1.5E-22 125.3 3.2 84 5-89 14-97 (101)
241 1why_A Hypothetical protein ri 99.7 6.5E-17 2.2E-21 118.0 9.5 76 97-178 15-93 (97)
242 1x4d_A Matrin 3; structural ge 99.7 2.3E-17 8E-22 121.0 6.9 81 4-90 11-95 (102)
243 1wf1_A RNA-binding protein RAL 99.7 5.7E-17 2E-21 121.2 9.2 76 96-179 24-101 (110)
244 2cpd_A Apobec-1 stimulating pr 99.7 9.6E-17 3.3E-21 117.6 10.2 78 94-179 10-90 (99)
245 1x4g_A Nucleolysin TIAR; struc 99.7 4.5E-17 1.5E-21 121.5 8.6 79 97-181 23-102 (109)
246 2err_A Ataxin-2-binding protei 99.7 5.1E-17 1.7E-21 121.3 8.7 83 3-87 24-107 (109)
247 2e5j_A Methenyltetrahydrofolat 99.7 6.8E-17 2.3E-21 117.9 9.1 79 96-179 16-95 (97)
248 1x5o_A RNA binding motif, sing 99.7 9.3E-17 3.2E-21 120.8 10.1 71 4-75 21-92 (114)
249 2dnq_A RNA-binding protein 4B; 99.7 1.8E-16 6.2E-21 114.0 11.2 80 3-90 3-83 (90)
250 1x4f_A Matrin 3; structural ge 99.7 4.5E-17 1.5E-21 121.2 8.1 79 96-180 22-104 (112)
251 2cpj_A Non-POU domain-containi 99.7 5.7E-17 2E-21 118.8 8.6 79 96-180 12-91 (99)
252 3d2w_A TAR DNA-binding protein 99.7 5.2E-17 1.8E-21 116.6 8.2 80 95-180 7-86 (89)
253 4f02_A Polyadenylate-binding p 99.7 1E-16 3.6E-21 134.0 11.3 86 96-181 12-98 (213)
254 1x4c_A Splicing factor, argini 99.7 1.2E-16 4.1E-21 119.0 10.4 80 4-90 11-96 (108)
255 1l3k_A Heterogeneous nuclear r 99.7 1.1E-16 3.6E-21 131.8 11.1 87 94-180 8-94 (196)
256 2e5g_A U6 snRNA-specific termi 99.7 2.5E-16 8.5E-21 114.2 11.7 81 4-89 4-84 (94)
257 2kn4_A Immunoglobulin G-bindin 99.7 7.6E-17 2.6E-21 128.4 9.7 85 5-89 67-152 (158)
258 2fc9_A NCL protein; structure 99.7 7.9E-17 2.7E-21 118.5 9.1 84 3-90 10-94 (101)
259 2fc8_A NCL protein; structure 99.7 1E-16 3.5E-21 118.1 9.5 85 3-90 10-95 (102)
260 2cpi_A CCR4-NOT transcription 99.7 5.1E-17 1.8E-21 121.6 7.8 84 5-88 12-102 (111)
261 3beg_B Splicing factor, argini 99.7 2.3E-17 7.9E-22 124.3 5.9 74 97-177 14-93 (115)
262 1x4f_A Matrin 3; structural ge 99.7 8.6E-17 2.9E-21 119.7 8.7 81 4-90 21-105 (112)
263 2ki2_A SS-DNA binding protein 99.7 1.8E-17 6.2E-22 119.2 4.9 80 9-89 2-82 (90)
264 3q2s_C Cleavage and polyadenyl 99.7 4.3E-17 1.5E-21 137.7 8.0 80 7-86 67-149 (229)
265 2ytc_A PRE-mRNA-splicing facto 99.7 2.2E-16 7.4E-21 112.2 10.5 77 94-176 7-85 (85)
266 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1E-16 3.5E-21 128.7 9.7 85 5-89 69-154 (165)
267 1why_A Hypothetical protein ri 99.7 1.5E-16 5.3E-21 116.0 9.7 79 4-88 13-94 (97)
268 2e5g_A U6 snRNA-specific termi 99.7 8.6E-17 2.9E-21 116.7 8.3 78 98-180 7-84 (94)
269 2krb_A Eukaryotic translation 99.7 4.5E-17 1.5E-21 114.8 6.5 71 100-172 2-80 (81)
270 2f3j_A RNA and export factor b 99.7 1.5E-16 5.2E-21 129.0 10.4 85 95-180 84-169 (177)
271 3lqv_A PRE-mRNA branch site pr 99.7 2.5E-16 8.5E-21 118.6 10.9 81 97-180 6-87 (115)
272 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1E-16 3.6E-21 124.9 9.1 81 4-84 59-140 (140)
273 2nlw_A Eukaryotic translation 99.7 9.2E-17 3.2E-21 119.0 8.3 83 4-88 11-101 (105)
274 2la4_A Nuclear and cytoplasmic 99.7 1.2E-16 4.1E-21 117.5 8.6 75 97-177 25-100 (101)
275 2hvz_A Splicing factor, argini 99.7 4.9E-17 1.7E-21 119.6 6.5 75 100-179 1-76 (101)
276 2jvo_A Nucleolar protein 3; nu 99.7 1.4E-16 4.7E-21 118.6 9.0 79 94-180 26-105 (108)
277 2dnp_A RNA-binding protein 14; 99.7 1.2E-16 4.1E-21 114.9 8.3 76 96-179 6-82 (90)
278 2cqh_A IGF-II mRNA-binding pro 99.7 5.3E-17 1.8E-21 117.5 6.4 76 97-179 6-84 (93)
279 1x4g_A Nucleolysin TIAR; struc 99.7 2.9E-16 9.8E-21 117.1 10.6 82 4-91 21-103 (109)
280 2kvi_A Nuclear polyadenylated 99.7 8.4E-17 2.9E-21 117.2 7.4 77 96-180 7-85 (96)
281 2ytc_A PRE-mRNA-splicing facto 99.7 2.9E-16 9.9E-21 111.6 9.7 76 3-84 7-84 (85)
282 2cpx_A Hypothetical protein FL 99.7 5E-17 1.7E-21 122.4 6.0 86 5-90 22-108 (115)
283 1sjr_A Polypyrimidine tract-bi 99.7 2.5E-16 8.7E-21 124.4 10.2 80 96-179 43-125 (164)
284 2la4_A Nuclear and cytoplasmic 99.7 3.3E-16 1.1E-20 115.1 10.2 77 4-86 23-100 (101)
285 3d2w_A TAR DNA-binding protein 99.7 6.9E-17 2.4E-21 115.9 6.4 80 3-88 6-85 (89)
286 2jvr_A Nucleolar protein 3; RN 99.7 8.2E-17 2.8E-21 120.1 6.8 81 3-87 23-105 (111)
287 2lcw_A RNA-binding protein FUS 99.5 4.6E-18 1.6E-22 128.4 0.0 88 3-90 2-98 (116)
288 2dnl_A Cytoplasmic polyadenyla 99.7 1.1E-16 3.8E-21 120.4 7.6 79 4-84 4-85 (114)
289 2dgu_A Heterogeneous nuclear r 99.7 3.1E-16 1.1E-20 115.7 9.8 80 4-91 7-87 (103)
290 2voo_A Lupus LA protein; RNA-b 99.7 2.7E-16 9.2E-21 129.3 10.5 80 98-178 108-187 (193)
291 1nu4_A U1A RNA binding domain; 99.7 9.1E-17 3.1E-21 117.2 6.8 83 96-181 5-92 (97)
292 2cpj_A Non-POU domain-containi 99.7 2.5E-16 8.6E-21 115.3 9.1 81 3-89 10-91 (99)
293 1fjc_A Nucleolin RBD2, protein 99.7 1.6E-16 5.4E-21 115.7 7.8 79 95-178 12-91 (96)
294 1wf0_A TDP-43, TAR DNA-binding 99.7 3.1E-17 1.1E-21 117.5 4.0 78 97-180 3-80 (88)
295 2xnq_A Nuclear polyadenylated 99.7 3.7E-16 1.3E-20 114.0 9.8 76 95-178 18-95 (97)
296 2krb_A Eukaryotic translation 99.7 1.5E-16 5E-21 112.2 7.3 72 8-81 1-80 (81)
297 2dnp_A RNA-binding protein 14; 99.7 3.7E-16 1.3E-20 112.3 9.6 79 3-89 4-83 (90)
298 2f3j_A RNA and export factor b 99.7 2.2E-16 7.6E-21 128.0 9.4 84 5-89 85-169 (177)
299 2j8a_A Histone-lysine N-methyl 99.7 2.8E-16 9.5E-21 117.8 8.7 78 100-177 3-95 (136)
300 2dgt_A RNA-binding protein 30; 99.7 5E-16 1.7E-20 112.1 9.7 80 3-90 5-85 (92)
301 1wf0_A TDP-43, TAR DNA-binding 99.7 1E-16 3.5E-21 114.8 5.9 80 5-90 2-81 (88)
302 2e5j_A Methenyltetrahydrofolat 99.6 4.5E-16 1.5E-20 113.5 9.0 80 4-88 15-95 (97)
303 2a3j_A U1 small nuclear ribonu 99.6 5.1E-16 1.7E-20 118.7 9.4 82 5-89 26-112 (127)
304 1x5p_A Negative elongation fac 99.6 9.3E-16 3.2E-20 111.8 10.4 77 96-180 12-89 (97)
305 2cpd_A Apobec-1 stimulating pr 99.6 1.2E-15 4.2E-20 111.6 10.8 78 4-89 11-91 (99)
306 2jvo_A Nucleolar protein 3; nu 99.6 7.6E-16 2.6E-20 114.6 9.6 78 3-88 26-104 (108)
307 1whx_A Hypothetical protein ri 99.6 4.2E-16 1.4E-20 116.6 8.2 75 98-178 9-84 (111)
308 2cqh_A IGF-II mRNA-binding pro 99.6 4E-16 1.4E-20 112.8 7.7 81 3-90 3-86 (93)
309 1wg1_A KIAA1579 protein, homol 99.6 4.2E-16 1.4E-20 111.6 7.7 74 98-178 4-78 (88)
310 1fxl_A Paraneoplastic encephal 99.6 1.1E-15 3.8E-20 122.1 10.9 82 99-180 2-84 (167)
311 2dnl_A Cytoplasmic polyadenyla 99.6 3.9E-16 1.3E-20 117.4 7.6 78 97-176 6-86 (114)
312 1wf1_A RNA-binding protein RAL 99.6 1E-15 3.5E-20 114.3 9.8 75 6-88 25-101 (110)
313 2e44_A Insulin-like growth fac 99.6 6.8E-16 2.3E-20 112.3 8.4 78 97-178 13-92 (96)
314 2cjk_A Nuclear polyadenylated 99.6 7.9E-16 2.7E-20 123.2 9.2 83 98-181 2-84 (167)
315 1fjc_A Nucleolin RBD2, protein 99.6 2.7E-16 9.4E-21 114.4 5.7 80 4-88 12-92 (96)
316 1b7f_A Protein (SXL-lethal pro 99.6 1.1E-15 3.7E-20 122.5 9.7 82 98-179 2-84 (168)
317 2cq2_A Hypothetical protein LO 99.6 3.5E-16 1.2E-20 116.5 6.2 78 96-179 22-107 (114)
318 2xnq_A Nuclear polyadenylated 99.6 1.7E-15 5.9E-20 110.4 9.8 76 4-87 18-95 (97)
319 2e5i_A Heterogeneous nuclear r 99.6 3.7E-15 1.3E-19 113.0 11.8 78 96-179 22-103 (124)
320 2hzc_A Splicing factor U2AF 65 99.6 1.1E-15 3.7E-20 109.0 8.2 72 97-174 4-86 (87)
321 3zzy_A Polypyrimidine tract-bi 99.6 2.2E-15 7.6E-20 114.7 10.3 78 97-179 26-107 (130)
322 1nu4_A U1A RNA binding domain; 99.6 4E-16 1.4E-20 113.7 6.0 83 3-88 3-90 (97)
323 2kvi_A Nuclear polyadenylated 99.6 8.1E-16 2.8E-20 112.0 7.5 78 4-89 6-85 (96)
324 2hzc_A Splicing factor U2AF 65 99.6 1.3E-15 4.3E-20 108.7 7.9 73 5-83 3-86 (87)
325 2i2y_A Fusion protein consists 99.6 1.4E-15 4.7E-20 120.1 8.8 79 4-87 69-148 (150)
326 3egn_A RNA-binding protein 40; 99.6 2.6E-16 8.8E-21 123.3 4.5 84 96-179 42-131 (143)
327 1whx_A Hypothetical protein ri 99.6 1.1E-15 3.7E-20 114.4 7.6 76 5-86 7-83 (111)
328 1wg1_A KIAA1579 protein, homol 99.6 1.5E-15 5.2E-20 108.7 8.1 76 6-88 3-79 (88)
329 2e44_A Insulin-like growth fac 99.6 1.3E-15 4.5E-20 110.7 7.9 79 6-88 13-93 (96)
330 3beg_B Splicing factor, argini 99.6 8.6E-16 3E-20 115.7 7.0 68 6-80 14-82 (115)
331 3pgw_S U1-70K; protein-RNA com 99.6 1.9E-15 6.4E-20 139.2 10.0 84 6-89 100-184 (437)
332 2voo_A Lupus LA protein; RNA-b 99.6 2.2E-15 7.4E-20 123.9 9.2 80 7-87 108-187 (193)
333 1x5p_A Negative elongation fac 99.6 7.2E-15 2.5E-19 107.1 10.9 80 3-90 10-90 (97)
334 3md3_A Nuclear and cytoplasmic 99.6 4.4E-15 1.5E-19 118.5 10.6 82 4-85 83-165 (166)
335 2qfj_A FBP-interacting repress 99.6 5E-15 1.7E-19 123.5 11.2 85 6-90 123-208 (216)
336 2cq2_A Hypothetical protein LO 99.6 2.3E-15 7.9E-20 112.1 8.0 77 3-85 20-104 (114)
337 1sjr_A Polypyrimidine tract-bi 99.6 8.3E-15 2.8E-19 115.8 11.0 81 4-88 42-125 (164)
338 2pe8_A Splicing factor 45; RRM 99.6 9.8E-15 3.3E-19 107.8 10.3 82 97-178 6-94 (105)
339 2j8a_A Histone-lysine N-methyl 99.6 2.7E-15 9.2E-20 112.4 7.1 77 9-85 3-94 (136)
340 2diu_A KIAA0430 protein; struc 99.6 6E-15 2E-19 104.6 8.5 75 99-183 8-89 (96)
341 3egn_A RNA-binding protein 40; 99.6 5.6E-16 1.9E-20 121.3 3.5 82 5-89 42-132 (143)
342 2bz2_A Negative elongation fac 99.6 4.1E-15 1.4E-19 112.9 8.2 77 96-180 36-113 (121)
343 2yh0_A Splicing factor U2AF 65 99.6 7.9E-15 2.7E-19 120.7 10.3 83 6-88 112-195 (198)
344 2g4b_A Splicing factor U2AF 65 99.6 7.8E-15 2.7E-19 118.0 9.9 80 5-84 91-171 (172)
345 3u1l_A PRE-mRNA-splicing facto 99.6 1.1E-14 3.9E-19 122.5 10.7 108 66-181 103-232 (240)
346 3nmr_A Cugbp ELAV-like family 99.6 1.7E-14 5.8E-19 116.1 10.7 81 98-178 2-88 (175)
347 3tyt_A Heterogeneous nuclear r 99.5 1.8E-14 6.1E-19 119.6 9.5 76 98-178 3-80 (205)
348 3zzy_A Polypyrimidine tract-bi 99.5 3.2E-14 1.1E-18 108.3 9.5 80 4-88 24-107 (130)
349 2bz2_A Negative elongation fac 99.5 2.5E-14 8.6E-19 108.5 8.8 78 4-89 35-113 (121)
350 2diu_A KIAA0430 protein; struc 99.5 5.4E-14 1.9E-18 99.7 9.3 76 7-92 7-89 (96)
351 2e5i_A Heterogeneous nuclear r 99.5 5.1E-14 1.7E-18 106.7 9.9 76 7-88 24-103 (124)
352 2pe8_A Splicing factor 45; RRM 99.5 6.3E-14 2.1E-18 103.4 9.3 82 5-86 5-93 (105)
353 3pgw_A U1-A; protein-RNA compl 99.5 7.9E-14 2.7E-18 121.3 10.7 81 96-179 6-91 (282)
354 2dit_A HIV TAT specific factor 99.5 7.2E-14 2.5E-18 104.5 8.6 82 95-180 11-104 (112)
355 2adc_A Polypyrimidine tract-bi 99.5 6.8E-14 2.3E-18 118.1 8.6 78 96-178 31-110 (229)
356 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.6E-13 8.9E-18 98.9 10.2 65 109-179 27-91 (100)
357 3v4m_A Splicing factor U2AF 65 99.5 1.4E-13 4.8E-18 101.6 8.6 83 97-179 3-98 (105)
358 1fje_B Nucleolin RBD12, protei 99.5 9.7E-14 3.3E-18 111.9 8.4 78 5-87 96-174 (175)
359 3u1l_A PRE-mRNA-splicing facto 99.5 7.2E-14 2.5E-18 117.6 7.2 78 5-88 131-230 (240)
360 2dit_A HIV TAT specific factor 99.4 6.3E-13 2.2E-17 99.3 10.6 84 3-90 10-105 (112)
361 3ue2_A Poly(U)-binding-splicin 99.4 5.1E-13 1.8E-17 100.5 9.2 80 98-177 19-108 (118)
362 1qm9_A Polypyrimidine tract-bi 99.4 1.7E-13 5.8E-18 112.8 7.1 76 99-179 3-80 (198)
363 1jmt_A Splicing factor U2AF 35 99.4 8.2E-14 2.8E-18 102.7 3.8 71 104-175 20-103 (104)
364 3sde_A Paraspeckle component 1 99.4 7.3E-13 2.5E-17 114.0 10.1 77 95-177 18-95 (261)
365 2d9o_A DNAJ (HSP40) homolog, s 99.4 3.4E-12 1.2E-16 93.0 11.7 77 6-88 8-91 (100)
366 3tht_A Alkylated DNA repair pr 99.4 1.6E-12 5.4E-17 115.2 9.4 112 3-123 13-132 (345)
367 3v4m_A Splicing factor U2AF 65 99.3 2.8E-12 9.5E-17 94.6 6.6 81 6-86 3-96 (105)
368 3tht_A Alkylated DNA repair pr 99.3 8.9E-12 3E-16 110.4 9.1 74 96-175 15-96 (345)
369 3ue2_A Poly(U)-binding-splicin 99.3 5.6E-12 1.9E-16 94.8 6.3 80 6-85 18-107 (118)
370 3s6e_A RNA-binding protein 39; 99.3 2.3E-11 7.7E-16 90.8 9.1 79 97-179 5-94 (114)
371 1jmt_A Splicing factor U2AF 35 99.3 2.6E-12 9.1E-17 94.5 3.7 71 13-84 20-103 (104)
372 1owx_A Lupus LA protein, SS-B, 99.2 1.4E-10 4.8E-15 86.7 9.4 78 97-180 16-98 (121)
373 1owx_A Lupus LA protein, SS-B, 99.1 4.3E-10 1.5E-14 84.1 7.6 70 6-81 16-90 (121)
374 3s6e_A RNA-binding protein 39; 99.0 4.7E-10 1.6E-14 83.6 7.3 78 4-85 3-91 (114)
375 2dnr_A Synaptojanin-1; RRM dom 99.0 7.1E-10 2.4E-14 77.8 7.3 70 100-177 8-85 (91)
376 1ufw_A Synaptojanin 2; RNP dom 98.8 3.1E-09 1.1E-13 74.9 4.9 69 100-176 16-93 (95)
377 3dxb_A Thioredoxin N-terminall 98.8 3E-08 1E-12 82.9 11.4 67 111-177 141-212 (222)
378 2dnr_A Synaptojanin-1; RRM dom 98.8 7.7E-09 2.6E-13 72.6 6.4 72 7-86 6-85 (91)
379 2dhx_A Poly (ADP-ribose) polym 98.7 8.8E-08 3E-12 68.3 9.1 89 6-112 6-99 (104)
380 1ufw_A Synaptojanin 2; RNP dom 98.7 1.9E-08 6.6E-13 70.9 5.0 73 6-86 13-94 (95)
381 3dxb_A Thioredoxin N-terminall 98.5 3.3E-07 1.1E-11 76.5 8.3 79 7-85 123-211 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.4 1.1E-06 3.6E-11 63.3 8.6 73 98-176 20-98 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.3 3.9E-06 1.3E-10 59.8 8.8 73 98-178 7-84 (104)
384 2l9w_A U4/U6 snRNA-associated- 98.3 4E-06 1.4E-10 60.3 8.1 71 5-81 18-94 (117)
385 1wey_A Calcipressin 1; structu 97.7 0.00016 5.3E-09 51.8 7.4 76 7-88 4-85 (104)
386 1wwh_A Nucleoporin 35, nucleop 97.7 0.00032 1.1E-08 51.6 9.1 78 97-181 22-100 (119)
387 1whv_A Poly(A)-specific ribonu 97.6 0.00026 8.8E-09 49.9 7.4 57 5-70 13-69 (100)
388 1wwh_A Nucleoporin 35, nucleop 97.6 0.00021 7.1E-09 52.6 7.1 75 4-85 20-95 (119)
389 1whv_A Poly(A)-specific ribonu 97.4 0.00036 1.2E-08 49.1 6.3 52 100-160 17-68 (100)
390 1uw4_A UPF3X; nonsense mediate 97.4 0.00079 2.7E-08 47.3 7.9 61 9-69 2-64 (91)
391 3ctr_A Poly(A)-specific ribonu 97.2 0.00046 1.6E-08 48.7 5.2 51 101-160 8-58 (101)
392 1wey_A Calcipressin 1; structu 97.2 0.0015 5.3E-08 46.6 7.7 74 98-177 4-83 (104)
393 1uw4_A UPF3X; nonsense mediate 97.2 0.0018 6.1E-08 45.5 7.8 66 100-165 2-70 (91)
394 3ctr_A Poly(A)-specific ribonu 97.2 0.00064 2.2E-08 48.0 5.3 52 9-69 7-58 (101)
395 3pq1_A Poly(A) RNA polymerase; 97.1 0.00031 1E-08 64.3 4.2 59 6-70 51-109 (464)
396 3pq1_A Poly(A) RNA polymerase; 96.6 0.0011 3.9E-08 60.6 3.3 56 99-160 53-108 (464)
397 2l08_A Regulator of nonsense t 96.5 0.0032 1.1E-07 44.5 4.3 64 6-69 7-72 (97)
398 2l08_A Regulator of nonsense t 96.1 0.004 1.4E-07 43.9 3.1 68 98-165 8-78 (97)
399 3p3d_A Nucleoporin 53; structu 96.0 0.0098 3.3E-07 44.3 5.0 77 100-177 8-98 (132)
400 3p3d_A Nucleoporin 53; structu 96.0 0.004 1.4E-07 46.4 2.9 78 7-85 6-97 (132)
401 3d45_A Poly(A)-specific ribonu 92.0 0.43 1.5E-05 44.3 7.9 56 6-70 438-493 (507)
402 3d45_A Poly(A)-specific ribonu 89.9 0.79 2.7E-05 42.5 7.6 53 99-160 440-492 (507)
403 4eyt_A Telomerase associated p 83.4 5.6 0.00019 27.1 6.9 57 6-70 10-66 (129)
404 2h4m_C Hnrpa1 protein, fragmen 68.7 4.8 0.00017 24.2 3.0 8 280-287 18-25 (49)
405 4eyt_A Telomerase associated p 63.1 33 0.0011 23.3 8.3 73 100-180 13-93 (129)
406 3j21_T 50S ribosomal protein L 59.0 34 0.0012 23.1 6.3 50 106-158 29-80 (86)
407 3lpe_A Putative transcription 56.9 43 0.0015 22.8 8.2 31 35-70 40-70 (92)
408 2g0c_A ATP-dependent RNA helic 53.6 42 0.0014 21.6 6.6 67 10-84 2-74 (76)
409 4e8u_A Putative uncharacterize 51.3 65 0.0022 24.9 7.4 55 101-158 14-80 (172)
410 3fry_A Probable copper-exporti 47.1 37 0.0013 21.3 4.9 56 100-162 7-62 (73)
411 3j21_T 50S ribosomal protein L 46.7 54 0.0018 22.2 5.6 55 11-68 25-81 (86)
412 2lfv_A Protein DAMX; cell divi 52.2 4.2 0.00014 29.0 0.0 54 110-165 33-88 (106)
413 2g0c_A ATP-dependent RNA helic 45.7 58 0.002 20.9 6.8 58 110-176 12-75 (76)
414 4e8u_A Putative uncharacterize 44.4 43 0.0015 25.9 5.4 56 10-68 14-81 (172)
415 3fut_A Dimethyladenosine trans 42.9 26 0.0009 29.2 4.5 33 9-42 111-143 (271)
416 2i9x_A Putative septation prot 41.2 36 0.0012 23.1 4.1 26 125-150 5-30 (87)
417 3uzu_A Ribosomal RNA small sub 41.0 15 0.00052 30.9 2.7 34 9-42 115-148 (279)
418 1i4w_A Mitochondrial replicati 39.8 24 0.0008 30.9 3.8 23 9-31 143-165 (353)
419 2inr_A DNA topoisomerase 4 sub 38.3 52 0.0018 30.3 5.9 61 8-69 275-338 (514)
420 2cu1_A Mitogen-activated prote 38.0 26 0.00089 24.4 2.9 61 104-172 21-82 (103)
421 2ia9_A Putative septation prot 35.3 49 0.0017 23.1 4.1 26 125-150 5-30 (100)
422 2i9z_A Putative septation prot 33.6 54 0.0019 23.1 4.1 26 125-150 5-30 (105)
423 3u5e_X 60S ribosomal protein L 33.0 88 0.003 23.3 5.4 52 102-156 81-134 (142)
424 1fme_A FSD-EY peptide; beta-BE 32.0 28 0.00095 17.3 1.7 13 20-32 13-25 (28)
425 4a17_R RPL23A, 60S ribosomal p 31.9 95 0.0033 23.4 5.4 52 102-156 89-142 (150)
426 2gu3_A YPMB protein; APC1927, 31.7 51 0.0018 24.3 4.0 47 13-59 68-127 (136)
427 3h7h_B Transcription elongatio 31.6 81 0.0028 22.1 4.9 34 35-73 41-74 (106)
428 2npt_B Mitogen-activated prote 31.5 1.2E+02 0.004 20.9 5.3 49 104-160 33-82 (100)
429 1vd2_A Protein kinase C, IOTA 31.1 1.1E+02 0.0038 20.7 5.3 54 11-69 17-73 (89)
430 1vq8_S 50S ribosomal protein L 31.1 83 0.0028 21.2 4.6 54 11-67 24-79 (85)
431 2qyc_A Ferredoxin-like protein 29.7 1.3E+02 0.0046 20.4 6.4 54 102-156 8-71 (103)
432 2jrh_A Mitogen-activated prote 28.9 1.2E+02 0.0039 20.6 4.8 59 106-172 19-78 (94)
433 2c60_A Human mitogen-activated 28.9 97 0.0033 21.6 4.6 49 104-160 44-93 (111)
434 3fut_A Dimethyladenosine trans 28.5 39 0.0013 28.2 3.2 34 100-134 111-144 (271)
435 3bb5_A Stress responsive alpha 27.9 1.6E+02 0.0056 20.9 7.1 59 100-158 22-91 (121)
436 2exu_A Transcription initiatio 27.8 97 0.0033 24.6 5.2 27 49-75 148-174 (200)
437 3ilw_A DNA gyrase subunit A; D 27.4 73 0.0025 28.9 4.9 62 7-68 235-299 (470)
438 2kjw_A TS9, 30S ribosomal prot 26.9 64 0.0022 22.3 3.5 58 52-123 7-68 (96)
439 2xzm_P RPS24E; ribosome, trans 26.7 45 0.0015 25.1 2.8 48 18-66 31-83 (149)
440 3zzp_A TS9, ribosomal protein 26.3 43 0.0015 22.1 2.4 59 52-124 7-69 (77)
441 1ywx_A 30S ribosomal protein S 26.0 1.7E+02 0.0058 20.4 5.8 48 18-66 28-80 (102)
442 3tqs_A Ribosomal RNA small sub 25.9 37 0.0013 28.0 2.6 34 101-134 98-131 (255)
443 2v94_A RPS24, 30S ribosomal pr 25.9 1.7E+02 0.0057 20.6 5.6 48 18-66 37-89 (107)
444 1qyr_A KSGA, high level kasuga 25.8 49 0.0017 27.2 3.3 34 9-42 91-124 (252)
445 1xn9_A 30S ribosomal protein S 25.5 1.7E+02 0.0059 20.3 6.0 50 17-67 27-81 (101)
446 2yko_A LINE-1 ORF1P; RNA-bindi 24.8 1.9E+02 0.0066 23.4 6.5 85 99-184 52-158 (233)
447 3dxs_X Copper-transporting ATP 24.8 1.2E+02 0.0043 18.5 6.4 56 100-161 4-63 (74)
448 1tr0_A Stable protein 1; plant 24.8 1.7E+02 0.0059 20.0 6.0 58 100-157 10-80 (108)
449 3uzu_A Ribosomal RNA small sub 24.5 22 0.00076 29.9 0.9 35 100-134 115-149 (279)
450 1ip9_A BEM1 protein; ubiquitin 24.2 1.1E+02 0.0037 20.6 4.1 56 11-71 23-78 (85)
451 4a4j_A Pacszia, cation-transpo 23.9 1.2E+02 0.0042 18.1 4.7 56 9-70 4-62 (69)
452 3swz_A Steroid 17-alpha-hydrox 23.4 68 0.0023 28.6 4.1 62 8-78 14-79 (494)
453 1kvi_A Copper-transporting ATP 23.2 1.4E+02 0.0047 18.3 7.4 63 2-70 3-69 (79)
454 3ftd_A Dimethyladenosine trans 23.1 48 0.0016 27.1 2.8 34 9-42 96-129 (249)
455 3tqs_A Ribosomal RNA small sub 22.9 28 0.00095 28.8 1.2 33 10-42 98-130 (255)
456 2i9x_A Putative septation prot 21.8 1.1E+02 0.0039 20.6 3.9 26 34-59 5-30 (87)
457 2xcs_B DNA gyrase subunit B, D 21.8 1.1E+02 0.0039 29.1 5.2 62 8-69 457-521 (692)
458 1ik9_C DNA ligase IV; DNA END 21.6 61 0.0021 18.0 2.1 15 18-32 20-34 (37)
459 3lpx_A GYRA, DNA gyrase, A sub 21.5 1.5E+02 0.005 27.1 5.6 62 7-69 225-289 (500)
460 2hiy_A Hypothetical protein; C 21.2 2.9E+02 0.0098 21.3 9.2 122 10-149 8-144 (183)
461 4a17_R RPL23A, 60S ribosomal p 21.2 1.5E+02 0.0051 22.3 4.8 51 13-66 91-143 (150)
462 3u5e_X 60S ribosomal protein L 20.7 1.4E+02 0.0048 22.2 4.5 51 13-66 83-135 (142)
463 1qyr_A KSGA, high level kasuga 20.4 55 0.0019 26.9 2.6 33 100-132 91-123 (252)
464 3mfb_A Uncharacterized protein 20.4 1.7E+02 0.0057 22.2 5.0 37 111-147 3-42 (157)
465 3d53_A Inorganic pyrophosphata 20.3 1.2E+02 0.004 23.5 4.2 38 112-160 131-168 (173)
466 2rf4_B DNA-directed RNA polyme 20.1 81 0.0028 21.2 2.8 27 7-33 18-44 (87)
467 1i4w_A Mitochondrial replicati 20.1 85 0.0029 27.3 3.8 23 100-122 143-165 (353)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2.4e-39 Score=268.31 Aligned_cols=183 Identities=54% Similarity=0.969 Sum_probs=157.3
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeecc
Q psy16454 2 TKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEP 81 (304)
Q Consensus 2 ~~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~ 81 (304)
+.++++.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.++++|++|++.+.+.+.++.+.+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v 86 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP 86 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeee
Confidence 35677899999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred ccCCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhC
Q psy16454 82 KRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKG 161 (304)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~ 161 (304)
.++.+......+......++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|++||+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~ 166 (196)
T 1l3k_A 87 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK 166 (196)
T ss_dssp EECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCS
T ss_pred ecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhC
Confidence 99887766666666667789999999999999999999999999999999999989999999999999999999999988
Q ss_pred CcccCCeeEEEeeccchHHHhhh
Q psy16454 162 THLVKGKKVDVKKALSKEEMAKL 184 (304)
Q Consensus 162 ~~~~~g~~i~v~~~~~~~~~~~~ 184 (304)
...|+++.|.|.++.++++....
T Consensus 167 ~~~~~G~~i~v~~a~~k~~~~~~ 189 (196)
T 1l3k_A 167 YHTVNGHNCEVRKALSKQEMASA 189 (196)
T ss_dssp CCEETTEECEEEECC--------
T ss_pred CcEECCEEEEEEecCChhHhccc
Confidence 89999999999999998876443
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=5.1e-36 Score=252.01 Aligned_cols=173 Identities=21% Similarity=0.401 Sum_probs=151.4
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
..+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++. +...+.++.+.+.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 35678999999999999999999999999999999999999999999999999999999999976 46778888888877
Q ss_pred CCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CC
Q psy16454 84 AVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GT 162 (304)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~ 162 (304)
+....... .....+|||.|||+++|+++|+++|++||.|+.|.|+.+. ..+++||||+|.+.++|++||+. ++
T Consensus 92 ~~~~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 92 SQRDPSLR----KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp CCCCTHHH----HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cccccccc----ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 66443221 1234689999999999999999999999999999999885 35799999999999999999976 99
Q ss_pred cccCCeeEEEeeccchHHHhh
Q psy16454 163 HLVKGKKVDVKKALSKEEMAK 183 (304)
Q Consensus 163 ~~~~g~~i~v~~~~~~~~~~~ 183 (304)
..|++++|+|+++.++.+...
T Consensus 166 ~~~~g~~i~V~~a~~~~~~~~ 186 (213)
T 4f02_A 166 MLLNDRKVFVGRFKSRKEREA 186 (213)
T ss_dssp CEETTEECEEEECCCHHHHHH
T ss_pred CEECCEEEEEEEcCCCcccch
Confidence 999999999999998776443
No 3
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.2e-36 Score=245.62 Aligned_cols=166 Identities=39% Similarity=0.791 Sum_probs=153.6
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAV 85 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~ 85 (304)
+++++|||+|||+++|+++|+++|++||+|.+|.++.++.++++++||||+|.++++|++|++. .+.++++.+.+.++.
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAI 79 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEccccccc
Confidence 4679999999999999999999999999999999999999999999999999999999999996 578899999988877
Q ss_pred CccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCccc
Q psy16454 86 PRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLV 165 (304)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~ 165 (304)
++... .+..+|||.|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++++...+
T Consensus 80 ~~~~~------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~ 153 (167)
T 2cjk_A 80 PRDEQ------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDF 153 (167)
T ss_dssp CHHHH------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECS
T ss_pred chhhc------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEe
Confidence 65432 245689999999999999999999999999999999998899999999999999999999999888999
Q ss_pred CCeeEEEeeccch
Q psy16454 166 KGKKVDVKKALSK 178 (304)
Q Consensus 166 ~g~~i~v~~~~~~ 178 (304)
++++|+|+++.++
T Consensus 154 ~g~~i~V~~a~pk 166 (167)
T 2cjk_A 154 KDRKIEIKRAEPR 166 (167)
T ss_dssp SSSCEEEEECCCC
T ss_pred CCeEEEEeecCCC
Confidence 9999999999765
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=3e-35 Score=247.34 Aligned_cols=175 Identities=22% Similarity=0.469 Sum_probs=153.8
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeeccccC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVEPKRA 84 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~~~~~ 84 (304)
+++++|||+|||+++|+++|+++|++||+|.+|+|+.++.++++++||||+|.++++|++|++ ++...+.++.|.+.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 457899999999999999999999999999999999998899999999999999999999999 5688899999999877
Q ss_pred CCccccCC-----CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHH
Q psy16454 85 VPRTEINR-----PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACL 159 (304)
Q Consensus 85 ~~~~~~~~-----~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~ 159 (304)
........ .......++|||.|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|++|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 65542211 1122455799999999999999999999999999999999999999999999999999999999998
Q ss_pred h-CCcccCCeeEEEeeccchHH
Q psy16454 160 K-GTHLVKGKKVDVKKALSKEE 180 (304)
Q Consensus 160 ~-~~~~~~g~~i~v~~~~~~~~ 180 (304)
. +...|++++|+|.++.++..
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCSS
T ss_pred HccCCEeCCcEEEEEEecCCCC
Confidence 5 99999999999999987744
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-34 Score=231.99 Aligned_cols=163 Identities=25% Similarity=0.450 Sum_probs=148.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHH-HhCCCCcCCeeeccccCCCc
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQ-AARPHTIDSKVVEPKRAVPR 87 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al-~~~~~~~~g~~i~~~~~~~~ 87 (304)
++|||+|||+++|+++|+++|++||+|.+|.++.++. +++++||||+|.++++|++|+ ..+...+.++.+.+.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999999864 679999999999999999999 55688899999999888655
Q ss_pred cccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccC
Q psy16454 88 TEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVK 166 (304)
Q Consensus 88 ~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~ 166 (304)
.. ....+..+|||.|||+++++++|+++|++||.|..+.++.++.++++++||||+|.+.++|++|++. ++..++
T Consensus 80 ~~----~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 155 (166)
T 3md3_A 80 QQ----SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN 155 (166)
T ss_dssp CC----CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CC----CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 43 2334567999999999999999999999999999999999999999999999999999999999985 999999
Q ss_pred CeeEEEeecc
Q psy16454 167 GKKVDVKKAL 176 (304)
Q Consensus 167 g~~i~v~~~~ 176 (304)
+++|.|+++.
T Consensus 156 g~~i~v~~a~ 165 (166)
T 3md3_A 156 GRPLRINWAA 165 (166)
T ss_dssp TEECEEEESC
T ss_pred CcEEEEEecC
Confidence 9999999985
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.6e-34 Score=232.09 Aligned_cols=163 Identities=25% Similarity=0.410 Sum_probs=150.2
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeeccccCC
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVEPKRAV 85 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~~~~~~ 85 (304)
+.++|||+|||+++|+++|+++|++||+|.+|.++.++.++++++||||+|.++++|++|++ .+...+.++.+.+.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999999998899999999999999999999997 56888999999998887
Q ss_pred CccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcc
Q psy16454 86 PRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHL 164 (304)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~ 164 (304)
+... ..+.++|||.|||+++++++|+++|++||.|..+.++.++.++++++||||+|.+.++|++|++. ++..
T Consensus 82 ~~~~------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 155 (168)
T 1b7f_A 82 PGGE------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI 155 (168)
T ss_dssp CCSS------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCcc------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCE
Confidence 5442 23457999999999999999999999999999999999998999999999999999999999985 8899
Q ss_pred cCC--eeEEEeec
Q psy16454 165 VKG--KKVDVKKA 175 (304)
Q Consensus 165 ~~g--~~i~v~~~ 175 (304)
+.+ ++|+|++|
T Consensus 156 ~~g~~~~l~V~~A 168 (168)
T 1b7f_A 156 PEGGSQPLSVRLA 168 (168)
T ss_dssp CTTCSSCCEEEEC
T ss_pred ecCCCeEEEEEeC
Confidence 977 99999875
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=8.9e-34 Score=228.47 Aligned_cols=163 Identities=22% Similarity=0.421 Sum_probs=148.7
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeeccccCC
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVEPKRAV 85 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~~~~~~ 85 (304)
.+++|||+|||+++|+++|+++|++||+|.+|.++.++.++++++||||+|.++++|++|++ .+...+.++.+.+.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999998899999999999999999999998 46888999999998887
Q ss_pred CccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcc
Q psy16454 86 PRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHL 164 (304)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~ 164 (304)
+... .....+|||.|||+++++++|+++|++||.|..+.++.++.++++++||||+|.+.++|++|++. ++..
T Consensus 81 ~~~~------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 154 (167)
T 1fxl_A 81 PSSA------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 154 (167)
T ss_dssp CCCG------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCcc------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc
Confidence 5443 23457899999999999999999999999999999999988999999999999999999999985 8999
Q ss_pred cCCee--EEEeec
Q psy16454 165 VKGKK--VDVKKA 175 (304)
Q Consensus 165 ~~g~~--i~v~~~ 175 (304)
+.++. |.|++|
T Consensus 155 ~~g~~~~i~v~~A 167 (167)
T 1fxl_A 155 PSGATEPITVKFA 167 (167)
T ss_dssp CTTCSSCCEEEEC
T ss_pred cCCCccceEEEeC
Confidence 99975 777764
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=5.9e-33 Score=225.46 Aligned_cols=163 Identities=24% Similarity=0.390 Sum_probs=138.4
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCC--CcccEEEEEeCCHHHHHHHHHhC-CCCcC---Ceeec
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTK--KSRGFGFITYSSAHMVDDAQAAR-PHTID---SKVVE 80 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--~~kG~aFV~f~~~e~a~~al~~~-~~~~~---g~~i~ 80 (304)
++++|||+|||+++|+++|+++|++||+|.+|+++.++.++ ++++||||+|.++++|++|++.+ ...+. .+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998876 89999999999999999999864 33443 34444
Q ss_pred cccCCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh
Q psy16454 81 PKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
+.++.+.. ......++|||.|||+++|+++|+++|++||.|..|.++.+. ++++++||||+|.+.++|++|++.
T Consensus 82 ~~~~~~~~-----~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 82 MKPADSEK-----NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEECGGGC-----CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred Eccccccc-----cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHH
Confidence 44433222 223456799999999999999999999999999999999886 588999999999999999999966
Q ss_pred -CCcccC---CeeEEEeec
Q psy16454 161 -GTHLVK---GKKVDVKKA 175 (304)
Q Consensus 161 -~~~~~~---g~~i~v~~~ 175 (304)
++..+. +++|.|+++
T Consensus 156 l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HTTSCCCTTCSSCCEEEEC
T ss_pred hcCCcccCCCCCCeEEEec
Confidence 766655 499999986
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=1.1e-32 Score=223.50 Aligned_cols=158 Identities=25% Similarity=0.460 Sum_probs=142.2
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhC----C-------ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCc
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAW----G-------DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTI 74 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~----G-------~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~ 74 (304)
+++++|||+|||+++|+++|+++|++| + +|.++.+.. +++||||+|.++++|++|++.+.+.+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 467999999999999999999999999 6 677776654 47899999999999999997778999
Q ss_pred CCeeeccccCCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHH
Q psy16454 75 DSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPV 154 (304)
Q Consensus 75 ~g~~i~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a 154 (304)
.++.+.+.++..... ....++|||.|||+++++++|+++|++||.|..|.++.++.++++++||||+|.++++|
T Consensus 76 ~g~~i~v~~~~~~~~------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A 149 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 149 (172)
T ss_dssp TTEECEEECCSSCCC------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHH
T ss_pred cCceeeecCCcccCC------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 999999988654432 23467999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHh-CCcccCCeeEEEeec
Q psy16454 155 DKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 155 ~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
++|++. ++..+++++|.|++|
T Consensus 150 ~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 150 DQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHcCCCEECCeEEEEEeC
Confidence 999986 999999999999987
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.4e-33 Score=234.00 Aligned_cols=168 Identities=23% Similarity=0.431 Sum_probs=144.6
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhC----C-------ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCc
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAW----G-------DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTI 74 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~----G-------~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~ 74 (304)
..+++|||+|||+++|+++|+++|++| + .|.++.+. ++++||||+|.++++|++|++++...+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al~l~g~~~ 75 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIF 75 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHGGGTTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHHHhcCCEE
Confidence 467999999999999999999999999 4 55555553 457999999999999999997778889
Q ss_pred CCeeeccccCCCccccCC--------------CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCc
Q psy16454 75 DSKVVEPKRAVPRTEINR--------------PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKK 140 (304)
Q Consensus 75 ~g~~i~~~~~~~~~~~~~--------------~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~ 140 (304)
.++.+.+.++.+...... .......++|||.|||+++++++|+++|++||.|..|.++.++.++++
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 999999988765432111 112246689999999999999999999999999999999999889999
Q ss_pred cceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccchH
Q psy16454 141 RGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALSKE 179 (304)
Q Consensus 141 ~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~~ 179 (304)
++||||+|.++++|++|++. ++..+++++|.|+++.++.
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999986 9999999999999997653
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=2.5e-33 Score=228.07 Aligned_cols=165 Identities=23% Similarity=0.333 Sum_probs=145.1
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeecccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKR 83 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~ 83 (304)
++.+.++|||+|||+++|+++|+++|++|+.|.. .++.+..++++++||||+|.++++|++|++++...+.++.+.+.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 5678999999999999999999999999998766 334445678899999999999999999998788899999999999
Q ss_pred CCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CC
Q psy16454 84 AVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GT 162 (304)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~ 162 (304)
+.++.. ......++|||.|||+++++++|+++|++|+.|..+ ..++++++||||+|.+.++|++|++. ++
T Consensus 88 ~~~~~~----~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 1fje_B 88 PKGRDS----KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQG 158 (175)
T ss_dssp CCCSSC----STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTE
T ss_pred CCCccc----cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 876543 233466899999999999999999999999987665 45788999999999999999999986 99
Q ss_pred cccCCeeEEEeeccch
Q psy16454 163 HLVKGKKVDVKKALSK 178 (304)
Q Consensus 163 ~~~~g~~i~v~~~~~~ 178 (304)
..+++++|.|+++.++
T Consensus 159 ~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 159 AEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EEETTEEEEEEECSSC
T ss_pred CEECCeEEEEEecCCC
Confidence 9999999999999764
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=4.7e-31 Score=231.10 Aligned_cols=171 Identities=15% Similarity=0.194 Sum_probs=154.9
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHH-HhCCCCcCCeeeccccC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQ-AARPHTIDSKVVEPKRA 84 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al-~~~~~~~~g~~i~~~~~ 84 (304)
...++|||+|||+++|+++|+++|++||+|.+|.++.++.++++++||||+|.+.++|++|+ ..+...+.++.+.+.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999 45688899999999998
Q ss_pred CCccccCCCCCCCCcceEEEcCCCCCC-CHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CC
Q psy16454 85 VPRTEINRPEAGATVKKLFVGSLRDDI-TEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GT 162 (304)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~v~~l~~~~-~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~ 162 (304)
.+.... ......++|||.|||+++ |+++|+++|++||.|..|.|+.+. +++++++|||+|.++++|++|++. ++
T Consensus 173 ~~~~~~---~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 173 DAGQLT---PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CGGGCC---TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCC---cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 765433 233466899999999995 999999999999999999999886 789999999999999999999986 99
Q ss_pred cccCCeeEEEeeccchHH
Q psy16454 163 HLVKGKKVDVKKALSKEE 180 (304)
Q Consensus 163 ~~~~g~~i~v~~~~~~~~ 180 (304)
..+.+++|.|.++.++..
T Consensus 249 ~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 249 LSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp CEETTEECEEEECCSSSC
T ss_pred CccCCeEEEEEEecCCCc
Confidence 999999999999987654
No 13
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.1e-31 Score=236.09 Aligned_cols=172 Identities=15% Similarity=0.227 Sum_probs=145.1
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCC-ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeecccc
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWG-DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVEPKR 83 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~~~~ 83 (304)
...++|||+|||+++|+++|+++|++|| +|.+|.++.++. +.+++||||+|.+.++|++|++ ++...+.++.|.+.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4578999999999999999999999999 999999998865 7789999999999999999999 678899999999999
Q ss_pred CCCccccCCC-CCCCCcceEEEcCCCCC-CCHHHHHHHHhcCCceeEEEEeeeCC-CCCccceEEEEeCChhHHHHHHHh
Q psy16454 84 AVPRTEINRP-EAGATVKKLFVGSLRDD-ITEEDLKEYFGQFGEVTSVALVTEKE-TGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~~l~v~~l~~~-~~~~~l~~~F~~~G~v~~v~i~~~~~-~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
+.+....... ......++|||.|||++ +++++|+++|++||.|..|.|+.+.. |+++++||||+|.+.++|++|+.+
T Consensus 194 a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l 273 (292)
T 2ghp_A 194 SNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQM 273 (292)
T ss_dssp CCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGG
T ss_pred CCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHh
Confidence 8876654444 45566789999999999 99999999999999999999998876 589999999999999999999944
Q ss_pred CCcccCCeeEEEeeccch
Q psy16454 161 GTHLVKGKKVDVKKALSK 178 (304)
Q Consensus 161 ~~~~~~g~~i~v~~~~~~ 178 (304)
++..|.+++|.|.++.++
T Consensus 274 ~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 274 NRSLLGNREISVSLADKK 291 (292)
T ss_dssp TTEEETTEEEEEEECCCC
T ss_pred cCCEECCcEEEEEEecCC
Confidence 999999999999999875
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=4.2e-31 Score=220.34 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=135.6
Q ss_pred ccCeEEEcCCC-CCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccccC
Q psy16454 7 HLRKLFIGGLD-YRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKRA 84 (304)
Q Consensus 7 ~~~~v~V~nLp-~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~~ 84 (304)
+.++|||+||| +++|+++|+++|++||.|.+|+|+.+ +++||||+|.++++|++|++. +...+.++.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999875 379999999999999999984 688899999999876
Q ss_pred CCccccCC-------------------------------CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCce--eEEEE
Q psy16454 85 VPRTEINR-------------------------------PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEV--TSVAL 131 (304)
Q Consensus 85 ~~~~~~~~-------------------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v--~~v~i 131 (304)
........ .....+.++|||.|||+++|+++|+++|++||.| +.|++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 53221000 0011345689999999999999999999999999 89999
Q ss_pred eeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCe----eEEEeec
Q psy16454 132 VTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGK----KVDVKKA 175 (304)
Q Consensus 132 ~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~----~i~v~~~ 175 (304)
+.++ ++.++||||+|++.++|.+||+. ++..|.++ ++.|+++
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8775 45679999999999999999976 88888777 5777665
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=1.5e-30 Score=220.99 Aligned_cols=164 Identities=16% Similarity=0.227 Sum_probs=140.9
Q ss_pred CCccCeEEEcCCCC-CCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeeccc
Q psy16454 5 PEHLRKLFIGGLDY-RTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVEPK 82 (304)
Q Consensus 5 ~~~~~~v~V~nLp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~~~ 82 (304)
..++++|||+|||+ ++|+++|+++|++||+|.+|+|+.++ ++||||+|.++++|++|++ ++...+.++.|.+.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45789999999999 99999999999999999999999875 6899999999999999997 56888999999998
Q ss_pred cCCCccccCCC-----------------------------CCCCCcceEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEEe
Q psy16454 83 RAVPRTEINRP-----------------------------EAGATVKKLFVGSLRDDITEEDLKEYFGQFG-EVTSVALV 132 (304)
Q Consensus 83 ~~~~~~~~~~~-----------------------------~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G-~v~~v~i~ 132 (304)
++......... ....+.++|||.|||+++++++|+++|++|| .|..|.|+
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE
Confidence 77644211000 1123468899999999999999999999999 99999996
Q ss_pred eeCCCCCccceEEEEeCChhHHHHHHHh-CCcccC-CeeEEEeeccch
Q psy16454 133 TEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVK-GKKVDVKKALSK 178 (304)
Q Consensus 133 ~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~-g~~i~v~~~~~~ 178 (304)
.+ .++||||+|++.++|++|++. ++..+. +++|.|+++.++
T Consensus 186 ~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 186 QK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp SS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 53 368999999999999999985 889999 999999998753
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=2e-30 Score=226.92 Aligned_cols=166 Identities=20% Similarity=0.316 Sum_probs=141.6
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHH----HHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCe
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLK----SHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSK 77 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~----~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~ 77 (304)
.+..++++|||+|||+++|+++|+ ++|++||.|.+|++++ ++++++||||+|.+.++|++|++. +...+.++
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 356789999999999999999976 8999999999999886 677999999999999999999955 57788999
Q ss_pred eeccccCCCccccC------------------------------------------------------------------
Q psy16454 78 VVEPKRAVPRTEIN------------------------------------------------------------------ 91 (304)
Q Consensus 78 ~i~~~~~~~~~~~~------------------------------------------------------------------ 91 (304)
.|.|.++.......
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 99988765433200
Q ss_pred ---------------------------------------CCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy16454 92 ---------------------------------------RPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALV 132 (304)
Q Consensus 92 ---------------------------------------~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~ 132 (304)
......+.++|||.|||+++++++|+++|++||.|++|+|+
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 00112245789999999999999999999999999999998
Q ss_pred eeCCCCCccceEEEEeCChhHHHHHHHh-CCcccC-CeeEEEeecc
Q psy16454 133 TEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVK-GKKVDVKKAL 176 (304)
Q Consensus 133 ~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~-g~~i~v~~~~ 176 (304)
.++ ++||||+|.+.++|++||+. ++..|. ++.|+|++++
T Consensus 241 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 653 57999999999999999986 888898 9999999975
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.3e-30 Score=229.21 Aligned_cols=163 Identities=12% Similarity=0.166 Sum_probs=137.7
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPK 82 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~ 82 (304)
+.+...++|||+|||+++|+++|+++|++||+|.+|.|+.++.. +++||||+|.++++|++|++++...+.++.+.+.
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVS 113 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEE
Confidence 34567899999999999999999999999999999999998654 5799999999999999999877889999999887
Q ss_pred cCCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHH-h
Q psy16454 83 RAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFG-EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACL-K 160 (304)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~-~ 160 (304)
++ ..++|||.|||+++++++|+++|++|| .|..|.|+.++. +++++||||+|.+.++|++|++ .
T Consensus 114 ~~-------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l 179 (292)
T 2ghp_A 114 HL-------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKL 179 (292)
T ss_dssp EC-------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHH
T ss_pred EC-------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHh
Confidence 75 357999999999999999999999999 999999998875 7789999999999999999998 5
Q ss_pred CCcccCCeeEEEeeccchHHH
Q psy16454 161 GTHLVKGKKVDVKKALSKEEM 181 (304)
Q Consensus 161 ~~~~~~g~~i~v~~~~~~~~~ 181 (304)
+...+.+++|.|.++.+....
T Consensus 180 ~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 180 NGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp TTCEETTEECEEEECCCC---
T ss_pred CCCEeCCcEEEEEECCCCccc
Confidence 999999999999998766543
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=2.1e-30 Score=215.07 Aligned_cols=162 Identities=16% Similarity=0.235 Sum_probs=138.9
Q ss_pred ccCeEEEcCCCC-CCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeeccccC
Q psy16454 7 HLRKLFIGGLDY-RTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVEPKRA 84 (304)
Q Consensus 7 ~~~~v~V~nLp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~~~~~ 84 (304)
.+++|||+|||+ ++|+++|+++|++||+|.+|+++.++ ++||||+|.++++|++|++ ++...+.++.+.+.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998864 6899999999999999998 5688899999999877
Q ss_pred CCccccCC-----------------------------CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEEeee
Q psy16454 85 VPRTEINR-----------------------------PEAGATVKKLFVGSLRDDITEEDLKEYFGQFG-EVTSVALVTE 134 (304)
Q Consensus 85 ~~~~~~~~-----------------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G-~v~~v~i~~~ 134 (304)
........ .....+.++|||.|||+++++++|+++|++|| .|..|.|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 64321100 01123468899999999999999999999999 9999999753
Q ss_pred CCCCCccceEEEEeCChhHHHHHHHh-CCcccC-CeeEEEeeccch
Q psy16454 135 KETGKKRGFGFVEYNDYDPVDKACLK-GTHLVK-GKKVDVKKALSK 178 (304)
Q Consensus 135 ~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~-g~~i~v~~~~~~ 178 (304)
.+++|||+|.+.++|++|++. ++..+. +++|.|.++.++
T Consensus 157 -----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 -----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp -----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred -----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 268999999999999999985 889999 999999998653
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1e-29 Score=220.03 Aligned_cols=157 Identities=27% Similarity=0.424 Sum_probs=139.7
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~~~ 82 (304)
.....++|||+|||+++|+++|+++|++||+|.+|.+.+ +++||||+|.++++|++|++ .+...+.++.+.+.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 345678999999999999999999999999999999965 36899999999999999998 56888999999998
Q ss_pred cCCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh--
Q psy16454 83 RAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-- 160 (304)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-- 160 (304)
++.+ ..+|||.|||+.+|+++|+++|++||.|..|.|+.+ .++++++||||+|.+.++|.+||..
T Consensus 92 ~a~~------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~ 158 (261)
T 3sde_A 92 FATH------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCG 158 (261)
T ss_dssp ECCC------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHH
T ss_pred eccc------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhc
Confidence 8753 468999999999999999999999999999999999 5899999999999999999999977
Q ss_pred CCcccC---CeeEEEeeccchH
Q psy16454 161 GTHLVK---GKKVDVKKALSKE 179 (304)
Q Consensus 161 ~~~~~~---g~~i~v~~~~~~~ 179 (304)
+...+. +++|.|+++.+..
T Consensus 159 ~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 159 DGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HSCEESSSSCCBCEEEECCCEE
T ss_pred CCeEEecCCCceEEEeeccccC
Confidence 444444 9999999887653
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2.9e-29 Score=219.70 Aligned_cols=155 Identities=21% Similarity=0.317 Sum_probs=141.3
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccccC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKRA 84 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~~ 84 (304)
.++++|||+|||+++|+++|+++|++|| |.+|.+ .++++||||+|.++++|++|++. +...+.++.+.+.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 4678999999999999999999999999 999888 34678999999999999999975 678899999998774
Q ss_pred CCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCc
Q psy16454 85 VPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTH 163 (304)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~ 163 (304)
. ...+|||.|||+++|+++|+++|++||.|..|.++.++.++++++||||+|.+.++|++|++. +..
T Consensus 93 ~------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~ 160 (284)
T 3smz_A 93 P------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK 160 (284)
T ss_dssp C------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred C------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 3 236899999999999999999999999999999999999999999999999999999999955 999
Q ss_pred ccCCeeEEEeeccchH
Q psy16454 164 LVKGKKVDVKKALSKE 179 (304)
Q Consensus 164 ~~~g~~i~v~~~~~~~ 179 (304)
.+.+++|.|.++.++.
T Consensus 161 ~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 161 PLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp EETTEECEEEECCGGG
T ss_pred EeCCcEEEEEECCCCC
Confidence 9999999999997764
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=3.4e-25 Score=177.14 Aligned_cols=141 Identities=16% Similarity=0.214 Sum_probs=111.0
Q ss_pred EEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCC--CCcCCeeeccc------cCCCccccCCCCCCCCcceEEEcCCC
Q psy16454 37 DVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARP--HTIDSKVVEPK------RAVPRTEINRPEAGATVKKLFVGSLR 108 (304)
Q Consensus 37 ~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~--~~~~g~~i~~~------~~~~~~~~~~~~~~~~~~~l~v~~l~ 108 (304)
+++|+.+.. +++||+||+|.++++|++|++... ..+++...... ..................+|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 466777644 689999999999999999997642 22222222111 11111122223334567899999999
Q ss_pred CCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccchH
Q psy16454 109 DDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALSKE 179 (304)
Q Consensus 109 ~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~~ 179 (304)
+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+. ++..+.+++|+|+++.++.
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999976 8999999999999997754
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=1.9e-22 Score=152.47 Aligned_cols=109 Identities=19% Similarity=0.354 Sum_probs=72.9
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
|..+++|||+|||+++|+++|+++|++||+|.+|+|+.++. .+|+||||+|+++++|++|++. +.+.+.++.|.|.+
T Consensus 2 P~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~ 79 (115)
T 4f25_A 2 PLGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 79 (115)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999853 4899999999999999999975 68899999999998
Q ss_pred CCCccccCC--CCCCCCcceEEEcCCCCCCCHHH
Q psy16454 84 AVPRTEINR--PEAGATVKKLFVGSLRDDITEED 115 (304)
Q Consensus 84 ~~~~~~~~~--~~~~~~~~~l~v~~l~~~~~~~~ 115 (304)
+.++..... .......++|||.|||+++|++.
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC----------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 876554322 22334456899999999999874
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=5.7e-21 Score=151.22 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=107.0
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHhC--CCCcCCeeeccccCCCccc----------cCCCCCCCCcceEEEcCCCCCCCH
Q psy16454 46 TKKSRGFGFITYSSAHMVDDAQAAR--PHTIDSKVVEPKRAVPRTE----------INRPEAGATVKKLFVGSLRDDITE 113 (304)
Q Consensus 46 ~~~~kG~aFV~f~~~e~a~~al~~~--~~~~~g~~i~~~~~~~~~~----------~~~~~~~~~~~~l~v~~l~~~~~~ 113 (304)
..+.+|+++|+|.++++|++|++.. ...+++ .+.+.++..+.. ..........++|||+|||+++|+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3467899999999999999998654 567788 888777665321 122334556789999999999999
Q ss_pred HHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccch
Q psy16454 114 EDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALSK 178 (304)
Q Consensus 114 ~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~ 178 (304)
++|+++|++||.|.+|.|+.+ +++||||+|.+.++|++||+. ++..+.+++|+|+++.++
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999999875 578999999999999999985 999999999999998765
No 24
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.84 E-value=2.9e-21 Score=177.98 Aligned_cols=84 Identities=29% Similarity=0.531 Sum_probs=78.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
..+.++|||.|||++||+++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|++||+. ++..|.+++|.|++
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999966 99999999999999
Q ss_pred ccchH
Q psy16454 175 ALSKE 179 (304)
Q Consensus 175 ~~~~~ 179 (304)
+.++.
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 97653
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=138.48 Aligned_cols=80 Identities=28% Similarity=0.479 Sum_probs=76.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeecc
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKAL 176 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~ 176 (304)
+.++|||+|||+++|+++|+++|++||+|++|.|++|+.+++++|||||+|.++++|++||+. ++..+.+++|+|++++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 457899999999999999999999999999999999999999999999999999999999976 9999999999999986
Q ss_pred c
Q psy16454 177 S 177 (304)
Q Consensus 177 ~ 177 (304)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 26
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=4.1e-20 Score=138.23 Aligned_cols=86 Identities=19% Similarity=0.290 Sum_probs=79.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeec
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
.+.++|||+|||+++++++|+++|++||.|++|.|+.|+.|++++|||||+|++.++|++||+. +...+.++.|.|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3557999999999999999999999999999999999999999999999999999999999976 999999999999999
Q ss_pred cchHHHh
Q psy16454 176 LSKEEMA 182 (304)
Q Consensus 176 ~~~~~~~ 182 (304)
....+..
T Consensus 84 ~~~~~~~ 90 (110)
T 3s8s_A 84 IKGQQRM 90 (110)
T ss_dssp STTHHHH
T ss_pred CCCcHHH
Confidence 7765543
No 27
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.82 E-value=2.8e-20 Score=157.25 Aligned_cols=83 Identities=19% Similarity=0.272 Sum_probs=77.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCC--ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFG--EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G--~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
..++|||.|||+++|+++|+++|++|| .|++|+|+.|+.++++||||||+|++.++|++||+. +...|++++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 999999999999999999999999999999999985 88999999999999
Q ss_pred ccchHH
Q psy16454 175 ALSKEE 180 (304)
Q Consensus 175 ~~~~~~ 180 (304)
+.+...
T Consensus 147 a~~~~~ 152 (229)
T 3q2s_C 147 VNKQFL 152 (229)
T ss_dssp CCHHHH
T ss_pred CCCCcc
Confidence 987654
No 28
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=3.3e-20 Score=147.75 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=78.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
..+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+. +...|++++|+|++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999986 99999999999999
Q ss_pred ccchH
Q psy16454 175 ALSKE 179 (304)
Q Consensus 175 ~~~~~ 179 (304)
+.+..
T Consensus 116 a~~~~ 120 (156)
T 1h2v_Z 116 DAGFK 120 (156)
T ss_dssp ESCCC
T ss_pred CCCCC
Confidence 97643
No 29
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.3e-20 Score=134.69 Aligned_cols=85 Identities=39% Similarity=0.719 Sum_probs=79.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeec
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKA 175 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~ 175 (304)
..+.++|||.|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+++.+.|++++|+|+++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHH
Q psy16454 176 LSKEE 180 (304)
Q Consensus 176 ~~~~~ 180 (304)
.++..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 87654
No 30
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=8.8e-20 Score=133.86 Aligned_cols=80 Identities=24% Similarity=0.399 Sum_probs=75.1
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccccCC
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKRAV 85 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~~~ 85 (304)
+.++|||+|||+++|+++|+++|++||+|.+|+|++++.++++++||||+|.++++|++|++. +...+.++.|.|.++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 457899999999999999999999999999999999999999999999999999999999975 6889999999999886
Q ss_pred C
Q psy16454 86 P 86 (304)
Q Consensus 86 ~ 86 (304)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 31
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=1.8e-20 Score=145.57 Aligned_cols=122 Identities=18% Similarity=0.207 Sum_probs=81.0
Q ss_pred EEEEEeCCHHHHHHHHHhCCCC-cCCeeeccccCCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEE
Q psy16454 52 FGFITYSSAHMVDDAQAARPHT-IDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVA 130 (304)
Q Consensus 52 ~aFV~f~~~e~a~~al~~~~~~-~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~ 130 (304)
++|++|++...+..|++..... ..++. .... ...+....+.++|||.|||+++|+++|+++|++||.|+.|.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~ 78 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSY------GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVY 78 (135)
T ss_dssp ------------------------------CCS------CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCc------CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE
Confidence 6788888888888888765221 11111 1111 12233445668999999999999999999999999999999
Q ss_pred EeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccchHH
Q psy16454 131 LVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALSKEE 180 (304)
Q Consensus 131 i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~~~ 180 (304)
|+.++.++++++||||+|.+.++|++||+. +...|.+++|+|+++.+...
T Consensus 79 i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 79 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp CCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999998999999999999999999999975 88999999999999976543
No 32
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=9.4e-21 Score=136.90 Aligned_cols=82 Identities=23% Similarity=0.404 Sum_probs=75.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh--CCcccCCeeEEEeec
Q psy16454 99 VKKLFVGSLRDDITEEDLKEYFGQFG-EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK--GTHLVKGKKVDVKKA 175 (304)
Q Consensus 99 ~~~l~v~~l~~~~~~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~--~~~~~~g~~i~v~~~ 175 (304)
+++|||+|||+++|+++|+++|++|| +|++|+|++|+.+++++|||||+|.++++|++||+. +...+++++|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 899999999999999999999999999999999976 345799999999999
Q ss_pred cchHH
Q psy16454 176 LSKEE 180 (304)
Q Consensus 176 ~~~~~ 180 (304)
.++++
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87643
No 33
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=2.9e-20 Score=134.34 Aligned_cols=82 Identities=17% Similarity=0.323 Sum_probs=75.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhCC-ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC--CCCcCCeeeccccC
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAWG-DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR--PHTIDSKVVEPKRA 84 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~--~~~~~g~~i~~~~~ 84 (304)
+++|||+|||+++|+++|+++|++|| +|.+|+|++++.++++++||||+|+++++|++|++.+ ...+.++.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 7999999999999999999999999999999999875 34689999999998
Q ss_pred CCccc
Q psy16454 85 VPRTE 89 (304)
Q Consensus 85 ~~~~~ 89 (304)
.+++.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 34
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.81 E-value=1.9e-19 Score=128.82 Aligned_cols=81 Identities=38% Similarity=0.692 Sum_probs=76.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEee
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKK 174 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 174 (304)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++.++++++||||+|.++++|++|++.+...+++++|+|++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34566899999999999999999999999999999999999999999999999999999999998888899999999987
Q ss_pred c
Q psy16454 175 A 175 (304)
Q Consensus 175 ~ 175 (304)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 35
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=4.2e-20 Score=134.23 Aligned_cols=82 Identities=17% Similarity=0.323 Sum_probs=74.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCc--eeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCc----ccCCe
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGE--VTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTH----LVKGK 168 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~--v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~----~~~g~ 168 (304)
.....+|||+|||+++|+++|+++|++||. |.+|+|++|+.++++||||||+|.++++|++||+. +.. .++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 456689999999999999999999999995 67999999999999999999999999999999976 443 58999
Q ss_pred eEEEeeccc
Q psy16454 169 KVDVKKALS 177 (304)
Q Consensus 169 ~i~v~~~~~ 177 (304)
+|.|++|++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 36
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=130.83 Aligned_cols=89 Identities=35% Similarity=0.587 Sum_probs=82.3
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPK 82 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~ 82 (304)
.++.+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|+++++|++|++++.+.+.++.|.|.
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 84 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEE
Confidence 35578899999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred cCCCccccC
Q psy16454 83 RAVPRTEIN 91 (304)
Q Consensus 83 ~~~~~~~~~ 91 (304)
++.++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 988765543
No 37
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=132.30 Aligned_cols=85 Identities=26% Similarity=0.411 Sum_probs=79.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeec
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
.+.++|||.|||+++++++|+++|++||.|..|.|+.++.++++++||||+|.+.++|++||+. +...+.+++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4568999999999999999999999999999999999998999999999999999999999955 899999999999999
Q ss_pred cchHHH
Q psy16454 176 LSKEEM 181 (304)
Q Consensus 176 ~~~~~~ 181 (304)
.++.+.
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 887653
No 38
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=134.68 Aligned_cols=87 Identities=32% Similarity=0.673 Sum_probs=78.9
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEE
Q psy16454 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDV 172 (304)
Q Consensus 93 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 172 (304)
+....+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+..+..|++++|+|
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V 90 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 90 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999988445899999999
Q ss_pred eeccchH
Q psy16454 173 KKALSKE 179 (304)
Q Consensus 173 ~~~~~~~ 179 (304)
+++.+..
T Consensus 91 ~~a~~~~ 97 (116)
T 2cqd_A 91 NLAYLGA 97 (116)
T ss_dssp EESTTTC
T ss_pred EEcccCC
Confidence 9997653
No 39
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-19 Score=132.31 Aligned_cols=86 Identities=37% Similarity=0.584 Sum_probs=79.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEee
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKK 174 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 174 (304)
...+.++|||.|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+. .+.|++++|.|++
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEe
Confidence 345567999999999999999999999999999999999999999999999999999999999984 7789999999999
Q ss_pred ccchHHH
Q psy16454 175 ALSKEEM 181 (304)
Q Consensus 175 ~~~~~~~ 181 (304)
+.++++.
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9887653
No 40
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=134.98 Aligned_cols=86 Identities=34% Similarity=0.624 Sum_probs=80.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEee
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKK 174 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 174 (304)
...+.++|||.|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+.+...|++++|+|++
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 34566899999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred ccchHH
Q psy16454 175 ALSKEE 180 (304)
Q Consensus 175 ~~~~~~ 180 (304)
+.++.+
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 987654
No 41
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=1.7e-19 Score=129.14 Aligned_cols=83 Identities=41% Similarity=0.784 Sum_probs=76.6
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeecc
Q psy16454 2 TKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEP 81 (304)
Q Consensus 2 ~~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~ 81 (304)
++++.+.++|||+|||+++|+++|+++|++||+|.+|.++.++.++++++||||+|.++++|++|++.+.+.++++.|.+
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP 84 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEE
Confidence 35667899999999999999999999999999999999999999999999999999999999999999888899999988
Q ss_pred ccC
Q psy16454 82 KRA 84 (304)
Q Consensus 82 ~~~ 84 (304)
+++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 754
No 42
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=2.1e-19 Score=135.57 Aligned_cols=87 Identities=26% Similarity=0.432 Sum_probs=79.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
....+.++|||.|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|++||+. +...|++++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3344568999999999999999999999999999999999999999999999999999999999966 999999999999
Q ss_pred eeccchHH
Q psy16454 173 KKALSKEE 180 (304)
Q Consensus 173 ~~~~~~~~ 180 (304)
+++.++..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99987654
No 43
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=133.77 Aligned_cols=85 Identities=24% Similarity=0.339 Sum_probs=79.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
...+.++|||.|||+++++++|+++|++||.|..|.|+.++.++++++||||+|.++++|++||+. +...|++++|.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345668999999999999999999999999999999999999999999999999999999999985 9999999999999
Q ss_pred eccchH
Q psy16454 174 KALSKE 179 (304)
Q Consensus 174 ~~~~~~ 179 (304)
++.+..
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 997654
No 44
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=133.17 Aligned_cols=87 Identities=28% Similarity=0.423 Sum_probs=80.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
....+.++|||.|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|++||+. +...|++++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445668999999999999999999999999999999999998999999999999999999999986 889999999999
Q ss_pred eeccchHH
Q psy16454 173 KKALSKEE 180 (304)
Q Consensus 173 ~~~~~~~~ 180 (304)
+++.++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99977643
No 45
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.80 E-value=1.2e-20 Score=146.61 Aligned_cols=123 Identities=11% Similarity=0.090 Sum_probs=73.7
Q ss_pred cEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEE
Q psy16454 51 GFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVA 130 (304)
Q Consensus 51 G~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~ 130 (304)
++||.+|..++.+-.++........+...-... .....+......++|||.|||+++|+++|+++|++|+ |++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~----g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~ 76 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGS----GDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVH 76 (139)
T ss_dssp -----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEE
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCC----CCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE
Confidence 567778877776666555433222222211110 0111223344567999999999999999999999999 77999
Q ss_pred EeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeeccchH
Q psy16454 131 LVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKE 179 (304)
Q Consensus 131 i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~~~~ 179 (304)
|+.++. ++++|||||+|+++++|++||+++...|+++.|+|..+.+++
T Consensus 77 i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 77 IEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSC
T ss_pred EEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCC
Confidence 999976 899999999999999999999778999999999998886653
No 46
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=4.7e-20 Score=133.97 Aligned_cols=84 Identities=21% Similarity=0.361 Sum_probs=75.7
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCc--eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCC-----CCcC
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGD--VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARP-----HTID 75 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~--v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~-----~~~~ 75 (304)
...+..++|||+|||+++|+++|+++|++||. |.+|++++|+.++++||||||+|.++++|++|++.++ ..++
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 45678899999999999999999999999995 6799999999999999999999999999999998753 2489
Q ss_pred CeeeccccCCC
Q psy16454 76 SKVVEPKRAVP 86 (304)
Q Consensus 76 g~~i~~~~~~~ 86 (304)
++.|.|.++++
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999988764
No 47
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=134.90 Aligned_cols=86 Identities=19% Similarity=0.393 Sum_probs=80.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeecc
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKAL 176 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~ 176 (304)
...++|||.|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|++||.++...|+++.|.|+++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 45679999999999999999999999999999999999999999999999999999999999669999999999999998
Q ss_pred chHHHh
Q psy16454 177 SKEEMA 182 (304)
Q Consensus 177 ~~~~~~ 182 (304)
++....
T Consensus 103 ~~~~~~ 108 (114)
T 2cq4_A 103 AEKNRL 108 (114)
T ss_dssp HHHHHH
T ss_pred CCccCC
Confidence 876543
No 48
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=2.3e-19 Score=144.23 Aligned_cols=88 Identities=23% Similarity=0.401 Sum_probs=79.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
....+.++|||.|||+++++++|+++|++||.|..|.|+.++.++++++||||+|.+.++|++||+. +...|.+++|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3345567899999999999999999999999999999999999999999999999999999999975 999999999999
Q ss_pred eeccchHHH
Q psy16454 173 KKALSKEEM 181 (304)
Q Consensus 173 ~~~~~~~~~ 181 (304)
.++.++...
T Consensus 147 ~~a~~~~~~ 155 (165)
T 1rk8_A 147 DWCFVKGPK 155 (165)
T ss_dssp EESEECC--
T ss_pred EEecCCCCC
Confidence 999877654
No 49
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-19 Score=134.41 Aligned_cols=87 Identities=24% Similarity=0.406 Sum_probs=80.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-C------CcccC
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-G------THLVK 166 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~------~~~~~ 166 (304)
....+.++|||.|||+++++++|+++|++||.|..|.|+.++.++++++||||+|.+.++|++||+. + ...|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 3445678999999999999999999999999999999999999999999999999999999999976 7 88999
Q ss_pred CeeEEEeeccchHH
Q psy16454 167 GKKVDVKKALSKEE 180 (304)
Q Consensus 167 g~~i~v~~~~~~~~ 180 (304)
+++|.|+++.++.+
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999987754
No 50
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=2.4e-19 Score=132.53 Aligned_cols=86 Identities=24% Similarity=0.409 Sum_probs=78.6
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEE
Q psy16454 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDV 172 (304)
Q Consensus 93 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 172 (304)
+....+.++|||.|||+++++++|+++|++|+ |+.|.|+.++.++++++||||+|+++++|++||+++...|.+++|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 87 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRV 87 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEE
Confidence 33445678999999999999999999999996 99999999999999999999999999999999966999999999999
Q ss_pred eeccchH
Q psy16454 173 KKALSKE 179 (304)
Q Consensus 173 ~~~~~~~ 179 (304)
+++.++.
T Consensus 88 ~~a~~~~ 94 (103)
T 2dng_A 88 DIAEGRK 94 (103)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9997654
No 51
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=130.04 Aligned_cols=83 Identities=27% Similarity=0.558 Sum_probs=77.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeec
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
.+.++|||.|||+++++++|+++|++||.|..|.|+.++.++++++||||+|++.++|++||+. +...+++++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3568999999999999999999999999999999999999999999999999999999999985 999999999999999
Q ss_pred cchH
Q psy16454 176 LSKE 179 (304)
Q Consensus 176 ~~~~ 179 (304)
.++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7653
No 52
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=132.10 Aligned_cols=89 Identities=44% Similarity=0.825 Sum_probs=82.4
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPK 82 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~ 82 (304)
.++.+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|+++++|++||+.+.+.+.++.|.|.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPK 90 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 35678899999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred cCCCccccC
Q psy16454 83 RAVPRTEIN 91 (304)
Q Consensus 83 ~~~~~~~~~ 91 (304)
++.++....
T Consensus 91 ~a~~~~~~~ 99 (105)
T 2dh8_A 91 PCTPRGMQP 99 (105)
T ss_dssp CSCCSSCCT
T ss_pred EccCCCCCC
Confidence 998766543
No 53
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=4.5e-19 Score=126.82 Aligned_cols=82 Identities=27% Similarity=0.521 Sum_probs=75.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeec
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
.+.++|||.|||+++++++|+++|++||.|.+|.|+.++.++++++||||+|.+.++|++|++. +...+++++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 3557999999999999999999999999999999999988999999999999999999999986 899999999999999
Q ss_pred cch
Q psy16454 176 LSK 178 (304)
Q Consensus 176 ~~~ 178 (304)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 765
No 54
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=6.3e-19 Score=137.53 Aligned_cols=85 Identities=25% Similarity=0.474 Sum_probs=79.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
.....++|||+|||+++++++|+++|++||.|++|.|+.++.++++++||||+|++.++|++||+. +...|.++.|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345668999999999999999999999999999999999999999999999999999999999985 8999999999999
Q ss_pred eccchH
Q psy16454 174 KALSKE 179 (304)
Q Consensus 174 ~~~~~~ 179 (304)
++.++.
T Consensus 118 ~a~~~~ 123 (139)
T 1u6f_A 118 LAASGH 123 (139)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 997663
No 55
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-19 Score=137.02 Aligned_cols=85 Identities=34% Similarity=0.677 Sum_probs=79.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeec
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKA 175 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~ 175 (304)
..+.++|||.|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|++||+.+...|+++.|+|+++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 34568999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred cchHH
Q psy16454 176 LSKEE 180 (304)
Q Consensus 176 ~~~~~ 180 (304)
.++.+
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87654
No 56
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=4.1e-19 Score=132.77 Aligned_cols=83 Identities=14% Similarity=0.297 Sum_probs=77.1
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
+.+.++|||+|||+++|+++|+++|++||+|.+|+|+.++.|++++|||||+|++.++|++|++. +...++++.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45779999999999999999999999999999999999999999999999999999999999985 67889999999988
Q ss_pred CCCc
Q psy16454 84 AVPR 87 (304)
Q Consensus 84 ~~~~ 87 (304)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 7654
No 57
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.8e-19 Score=132.42 Aligned_cols=86 Identities=27% Similarity=0.461 Sum_probs=78.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCC-CCccceEEEEeCChhHHHHHHHhCCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKET-GKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~-~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 172 (304)
.+..+.++|||.|||+++++++|+++|++|| |+.|.|+.++.+ +++++||||+|+++++|++||.++...|.+++|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRV 88 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEE
Confidence 3445668999999999999999999999999 999999999887 89999999999999999999965999999999999
Q ss_pred eeccchHH
Q psy16454 173 KKALSKEE 180 (304)
Q Consensus 173 ~~~~~~~~ 180 (304)
+++.++.+
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987643
No 58
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.6e-19 Score=133.49 Aligned_cols=87 Identities=32% Similarity=0.570 Sum_probs=80.7
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPK 82 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~ 82 (304)
..+.+.++|||+|||+++|+++|+++|++||+|++|+|+.++.++++++||||+|.++++|++|++.++..+.++.|.|.
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~ 91 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVN 91 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999998779999999999
Q ss_pred cCCCccc
Q psy16454 83 RAVPRTE 89 (304)
Q Consensus 83 ~~~~~~~ 89 (304)
++.+...
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9876543
No 59
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-19 Score=132.35 Aligned_cols=85 Identities=32% Similarity=0.633 Sum_probs=78.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
..+.++|||.|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+. +...|++++|+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999965 99999999999999
Q ss_pred ccchHH
Q psy16454 175 ALSKEE 180 (304)
Q Consensus 175 ~~~~~~ 180 (304)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 977643
No 60
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.8e-19 Score=130.78 Aligned_cols=83 Identities=14% Similarity=0.188 Sum_probs=76.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeecc
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKAL 176 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~ 176 (304)
...++|||+|||+++|+++|+++|++||+|.+|.|+.++. ++++|||||+|+++++|++||+++.+.+++++|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 4557999999999999999999999999999999999987 899999999999999999999988899999999999887
Q ss_pred chHH
Q psy16454 177 SKEE 180 (304)
Q Consensus 177 ~~~~ 180 (304)
...+
T Consensus 88 ~~~~ 91 (103)
T 1s79_A 88 DYFA 91 (103)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6443
No 61
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.7e-19 Score=129.27 Aligned_cols=89 Identities=26% Similarity=0.454 Sum_probs=81.2
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPK 82 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~ 82 (304)
...++.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.+.++|++|++. .+.++++.|.|.
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~ 88 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEE
Confidence 4557789999999999999999999999999999999999999999999999999999999999995 678999999999
Q ss_pred cCCCccccCC
Q psy16454 83 RAVPRTEINR 92 (304)
Q Consensus 83 ~~~~~~~~~~ 92 (304)
++.++.....
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2cqg_A 89 LPNSKQSQDS 98 (103)
T ss_dssp CCCTTCCCCC
T ss_pred ecCCCCcCCC
Confidence 9988765443
No 62
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=2.5e-19 Score=135.19 Aligned_cols=106 Identities=19% Similarity=0.310 Sum_probs=93.1
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~~ 81 (304)
-+++..++|||+|||+++|+++|+++|++||+|.+|.++.+ +.+++||||+|.+.++|++|++ ++...+.++.|.+
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 79 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVV 79 (115)
T ss_dssp CCTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 35678899999999999999999999999999999999975 3458999999999999999999 5688999999999
Q ss_pred ccCCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCc
Q psy16454 82 KRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGE 125 (304)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~ 125 (304)
.++.+.... .+++...++++|+++|++||.
T Consensus 80 ~~a~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 80 LYYNANRAF--------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp EECCHHHHT--------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EEecCChhh--------------hhhhHhHhHHHHHHHHHHhCC
Confidence 998765543 466778899999999999974
No 63
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=126.84 Aligned_cols=84 Identities=26% Similarity=0.400 Sum_probs=77.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
....+.++|||.|||+++++++|+++|++||.|..|.|+.++.++++++||||+|+++++|++|++. +...+++++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3445678999999999999999999999999999999999999999999999999999999999986 999999999999
Q ss_pred eeccc
Q psy16454 173 KKALS 177 (304)
Q Consensus 173 ~~~~~ 177 (304)
+++.+
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 98854
No 64
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=2.6e-19 Score=131.66 Aligned_cols=85 Identities=18% Similarity=0.257 Sum_probs=79.5
Q ss_pred CcceEEEcCCCC------CCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCC-ee
Q psy16454 98 TVKKLFVGSLRD------DITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKG-KK 169 (304)
Q Consensus 98 ~~~~l~v~~l~~------~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g-~~ 169 (304)
..++|||.|||+ ++++++|+++|++||.|.+|.|+.++.|++++|||||+|.++++|++||+. +...+.+ ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 457999999999 999999999999999999999999999999999999999999999999975 9999999 99
Q ss_pred EEEeeccchHHHh
Q psy16454 170 VDVKKALSKEEMA 182 (304)
Q Consensus 170 i~v~~~~~~~~~~ 182 (304)
|.|.++.+++...
T Consensus 85 l~V~~a~~~~~~~ 97 (100)
T 3ns6_A 85 LFLYTMKDVERYN 97 (100)
T ss_dssp CEEEESHHHHHHH
T ss_pred EEEEECchhhhhh
Confidence 9999998877653
No 65
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=3.8e-19 Score=132.90 Aligned_cols=88 Identities=42% Similarity=0.734 Sum_probs=77.2
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeecc
Q psy16454 2 TKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEP 81 (304)
Q Consensus 2 ~~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~ 81 (304)
.+++++.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.+.++|++|++.+++.+.++.|.+
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V 98 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 98 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEE
Confidence 35667889999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred ccCCCccc
Q psy16454 82 KRAVPRTE 89 (304)
Q Consensus 82 ~~~~~~~~ 89 (304)
.++.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99886653
No 66
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.8e-19 Score=131.47 Aligned_cols=85 Identities=24% Similarity=0.403 Sum_probs=79.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
...+.++|||.|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|++||+. +...|++++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 345668999999999999999999999999999999999999999999999999999999999985 8899999999999
Q ss_pred eccchH
Q psy16454 174 KALSKE 179 (304)
Q Consensus 174 ~~~~~~ 179 (304)
++.++.
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 997764
No 67
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=3.7e-19 Score=137.76 Aligned_cols=85 Identities=21% Similarity=0.252 Sum_probs=78.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCc---eeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEE
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGE---VTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDV 172 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~---v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 172 (304)
.....+|||+|||+++|+++|+++|++||. |+.|.|+.++. ++++|||||+|+++++|++||+++...|+++.|+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 345679999999999999999999999999 89999999987 99999999999999999999999889999999999
Q ss_pred eeccchHHH
Q psy16454 173 KKALSKEEM 181 (304)
Q Consensus 173 ~~~~~~~~~ 181 (304)
.++.+++..
T Consensus 120 ~~a~~~e~~ 128 (136)
T 2hgl_A 120 FKSHRTEMD 128 (136)
T ss_dssp EECCHHHHH
T ss_pred EECChHHHH
Confidence 999776543
No 68
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.8e-19 Score=133.45 Aligned_cols=87 Identities=13% Similarity=0.171 Sum_probs=79.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCce-eEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEV-TSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v-~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 174 (304)
..+.++|||.|||+++|+++|+++|++|+.| ..|.|+.++ +++++|||||+|+++++|++||+++...|.++.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 4456899999999999999999999999999 889999998 89999999999999999999998888999999999999
Q ss_pred ccchHHHhh
Q psy16454 175 ALSKEEMAK 183 (304)
Q Consensus 175 ~~~~~~~~~ 183 (304)
+.+++....
T Consensus 91 a~~~~~~~~ 99 (114)
T 2cpy_A 91 VTLEDMREI 99 (114)
T ss_dssp ECHHHHHHH
T ss_pred CCHHHHHHH
Confidence 988775443
No 69
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=6.7e-19 Score=124.77 Aligned_cols=80 Identities=28% Similarity=0.460 Sum_probs=75.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccch
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALSK 178 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~ 178 (304)
.+|||+|||+++++++|+++|++||.|.+|.++.++.++++++||||+|.++++|++|++. ++..+++++|+|+++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 5899999999999999999999999999999999999999999999999999999999985 999999999999999765
Q ss_pred H
Q psy16454 179 E 179 (304)
Q Consensus 179 ~ 179 (304)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 70
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.5e-19 Score=130.65 Aligned_cols=83 Identities=23% Similarity=0.526 Sum_probs=77.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEE-EEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSV-ALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v-~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
.+.++|||.|||+++++++|+++|++||.|..| .|+.++.++++++||||+|+++++|++||+. +...+.+++|.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356899999999999999999999999999999 9999988999999999999999999999985 88999999999999
Q ss_pred ccchH
Q psy16454 175 ALSKE 179 (304)
Q Consensus 175 ~~~~~ 179 (304)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 97764
No 71
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.4e-19 Score=132.02 Aligned_cols=90 Identities=23% Similarity=0.396 Sum_probs=81.9
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-------CCCc
Q psy16454 2 TKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-------PHTI 74 (304)
Q Consensus 2 ~~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-------~~~~ 74 (304)
+.++.+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.+.++|++|++.+ ...+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 456678899999999999999999999999999999999999999999999999999999999999864 6789
Q ss_pred CCeeeccccCCCccccC
Q psy16454 75 DSKVVEPKRAVPRTEIN 91 (304)
Q Consensus 75 ~g~~i~~~~~~~~~~~~ 91 (304)
.++.|.|.++.++....
T Consensus 89 ~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SSCEEEEECCCCCCCCC
T ss_pred cCEEEEEEECCCCccCC
Confidence 99999999998765543
No 72
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-19 Score=132.26 Aligned_cols=85 Identities=27% Similarity=0.448 Sum_probs=78.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
..+.++|||.|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+. +...|++++|+|++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34668999999999999999999999999999999999999999999999999999999999975 99999999999999
Q ss_pred ccchHH
Q psy16454 175 ALSKEE 180 (304)
Q Consensus 175 ~~~~~~ 180 (304)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987643
No 73
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=128.17 Aligned_cols=85 Identities=28% Similarity=0.442 Sum_probs=77.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
....+.++|||.|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.++++|++||+. +...+++++|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 334566899999999999999999999999999999999988 899999999999999999999966 999999999999
Q ss_pred eeccchH
Q psy16454 173 KKALSKE 179 (304)
Q Consensus 173 ~~~~~~~ 179 (304)
+++.++.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9997654
No 74
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.7e-19 Score=128.54 Aligned_cols=89 Identities=24% Similarity=0.389 Sum_probs=80.8
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
....+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.++++|++|++. +.+.+.++.|.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (99)
T 1whw_A 3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 82 (99)
T ss_dssp CCCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3467889999999999999999999999999999999999988999999999999999999999955 578899999999
Q ss_pred ccCCCccccC
Q psy16454 82 KRAVPRTEIN 91 (304)
Q Consensus 82 ~~~~~~~~~~ 91 (304)
.++.++....
T Consensus 83 ~~a~~~~~~~ 92 (99)
T 1whw_A 83 LPSTIKKEAS 92 (99)
T ss_dssp EECCCCSTTC
T ss_pred EEcCCCcccc
Confidence 9988776543
No 75
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=1.8e-18 Score=130.45 Aligned_cols=88 Identities=28% Similarity=0.523 Sum_probs=80.6
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
....+.++|||.|||+++++++|+++|++||.|..|.|+.++.++++++||||+|.++++|++||+. +...|.++.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3445678999999999999999999999999999999999988999999999999999999999975 889999999999
Q ss_pred eeccchHHH
Q psy16454 173 KKALSKEEM 181 (304)
Q Consensus 173 ~~~~~~~~~ 181 (304)
+++.++...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999877543
No 76
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.5e-19 Score=131.09 Aligned_cols=87 Identities=26% Similarity=0.441 Sum_probs=79.6
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeee-CCCCCccceEEEEeCChhHHHHHHHh--CCcccCCeeE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTE-KETGKKRGFGFVEYNDYDPVDKACLK--GTHLVKGKKV 170 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~-~~~~~~~G~afV~f~~~~~a~~A~~~--~~~~~~g~~i 170 (304)
....+.++|||.|||+++++++|+++|++||.|+.|.|+.+ +.++++++||||+|.+.++|++||+. +...|.+++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34456689999999999999999999999999999999998 78899999999999999999999975 7899999999
Q ss_pred EEeeccchHH
Q psy16454 171 DVKKALSKEE 180 (304)
Q Consensus 171 ~v~~~~~~~~ 180 (304)
.|+++.++..
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987654
No 77
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=5.5e-19 Score=130.81 Aligned_cols=84 Identities=26% Similarity=0.450 Sum_probs=77.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhc-CCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcc-cCCeeEEE
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQ-FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHL-VKGKKVDV 172 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~-~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~-~~g~~i~v 172 (304)
..+..+|||.|||+++|+++|+++|++ ||.|..|.|+.++ ++++++||||+|.+.++|++||+. +... +++++|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 345689999999999999999999999 9999999999998 899999999999999999999985 8888 99999999
Q ss_pred eeccchHH
Q psy16454 173 KKALSKEE 180 (304)
Q Consensus 173 ~~~~~~~~ 180 (304)
+++.++..
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99977654
No 78
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=4e-19 Score=136.29 Aligned_cols=87 Identities=24% Similarity=0.469 Sum_probs=79.8
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
....+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|.++++|++||+. +...|+++.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3445568999999999999999999999999999999999998999999999999999999999975 999999999999
Q ss_pred eeccchHH
Q psy16454 173 KKALSKEE 180 (304)
Q Consensus 173 ~~~~~~~~ 180 (304)
+++.++..
T Consensus 97 ~~a~~~~~ 104 (126)
T 3ex7_B 97 DWCFVRGP 104 (126)
T ss_dssp EESEESSS
T ss_pred EEecCCCC
Confidence 99977643
No 79
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.4e-19 Score=130.26 Aligned_cols=85 Identities=34% Similarity=0.535 Sum_probs=77.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
....+.++|||.|||+++|+++|+++|++||.|..|.|+.+ ++++++||||+|.+.++|++||+. +...+.+++|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34456789999999999999999999999999999999987 789999999999999999999985 999999999999
Q ss_pred eeccchHH
Q psy16454 173 KKALSKEE 180 (304)
Q Consensus 173 ~~~~~~~~ 180 (304)
+++.++.+
T Consensus 88 ~~a~~~~~ 95 (103)
T 2d9p_A 88 ALAQRKEE 95 (103)
T ss_dssp EECSSCCC
T ss_pred EEeccccc
Confidence 99987654
No 80
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=1.9e-19 Score=129.78 Aligned_cols=82 Identities=21% Similarity=0.310 Sum_probs=70.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCC--ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeecc
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFG--EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKAL 176 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G--~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~ 176 (304)
.+|||+|||+++|+++|+++|++|| .|.+|.|+.++.+++++|||||+|.+.++|++||+. +...+++++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999999999999999999999999999999965 8899999999999998
Q ss_pred chHHH
Q psy16454 177 SKEEM 181 (304)
Q Consensus 177 ~~~~~ 181 (304)
++...
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 77653
No 81
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.78 E-value=4e-19 Score=132.76 Aligned_cols=86 Identities=38% Similarity=0.649 Sum_probs=76.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEee
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKK 174 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 174 (304)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+..+..++++.|.|++
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999977999999999999
Q ss_pred ccchHH
Q psy16454 175 ALSKEE 180 (304)
Q Consensus 175 ~~~~~~ 180 (304)
+.++..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987643
No 82
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-19 Score=132.60 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=73.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeec
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKA 175 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~ 175 (304)
....++|||.|||+++|+++|+++|++|+. ++|.|+.++ +++++|||||+|+++++|++||+++...|+++.|+|..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 345679999999999999999999999995 599999997 899999999999999999999988999999999999887
Q ss_pred cch
Q psy16454 176 LSK 178 (304)
Q Consensus 176 ~~~ 178 (304)
.+.
T Consensus 90 ~~~ 92 (102)
T 1wez_A 90 STA 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 83
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=1e-18 Score=124.41 Aligned_cols=80 Identities=29% Similarity=0.487 Sum_probs=75.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeec
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
.+.++|||.|||+++++++|+++|++||.|..|.|+.++.++++++||||+|+++++|++|++. +...+++++|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4568999999999999999999999999999999999989999999999999999999999965 999999999999987
Q ss_pred c
Q psy16454 176 L 176 (304)
Q Consensus 176 ~ 176 (304)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 84
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5e-19 Score=129.59 Aligned_cols=84 Identities=31% Similarity=0.472 Sum_probs=77.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCC---CCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKE---TGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~---~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
.+.++|||.|||+++++++|+++|++||.|..|.|+.++. ++++++||||+|.+.++|++||+. +...|++++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3557999999999999999999999999999999999887 668999999999999999999986 999999999999
Q ss_pred eeccchHH
Q psy16454 173 KKALSKEE 180 (304)
Q Consensus 173 ~~~~~~~~ 180 (304)
+++.++..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99977643
No 85
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=126.01 Aligned_cols=86 Identities=24% Similarity=0.505 Sum_probs=79.7
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~~~~ 83 (304)
+.+.++|||+|||+++|+++|+++|++||+|.+|.++.++.++++++||||+|+++++|++|++ ++...+.++.|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4678999999999999999999999999999999999999999999999999999999999999 568899999999999
Q ss_pred CCCcccc
Q psy16454 84 AVPRTEI 90 (304)
Q Consensus 84 ~~~~~~~ 90 (304)
+.++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 8876543
No 86
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=129.78 Aligned_cols=86 Identities=30% Similarity=0.577 Sum_probs=79.5
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEE
Q psy16454 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVD 171 (304)
Q Consensus 93 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~ 171 (304)
+......++|||+|||+++++++|+++|++||.|..|.|+.++.++++++||||+|.+.++|++|++. ++..+.+++|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44455678999999999999999999999999999999999999999999999999999999999975 99999999999
Q ss_pred Eeeccch
Q psy16454 172 VKKALSK 178 (304)
Q Consensus 172 v~~~~~~ 178 (304)
|+++.++
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9998765
No 87
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=8.6e-19 Score=129.54 Aligned_cols=87 Identities=29% Similarity=0.499 Sum_probs=80.1
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~~ 81 (304)
.+.++.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.++++|++|++ ++.+.+.++.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 455678999999999999999999999999999999999999999999999999999999999999 4688899999999
Q ss_pred ccCCCccc
Q psy16454 82 KRAVPRTE 89 (304)
Q Consensus 82 ~~~~~~~~ 89 (304)
.++.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99886543
No 88
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=1.4e-18 Score=131.11 Aligned_cols=88 Identities=25% Similarity=0.331 Sum_probs=80.0
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
++.+.++|||+|||+++|+++|+++|++||+|.+|+|+.++.++++++||||+|.++++|++|++. +...+.++.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999965 6888999999999
Q ss_pred cCCCccccC
Q psy16454 83 RAVPRTEIN 91 (304)
Q Consensus 83 ~~~~~~~~~ 91 (304)
++.++....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpz_A 101 LKRSKNDSK 109 (115)
T ss_dssp CCCCSCCCC
T ss_pred EcCCCCcCC
Confidence 988765543
No 89
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.7e-19 Score=131.18 Aligned_cols=90 Identities=34% Similarity=0.597 Sum_probs=82.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
..+.++|||.|||+++++++|+++|++||.|..|.|+.++.++++++||||+|.+.++|++|++. +...+.++.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999975 89999999999999
Q ss_pred ccchHHHhhhc
Q psy16454 175 ALSKEEMAKLK 185 (304)
Q Consensus 175 ~~~~~~~~~~~ 185 (304)
+.++......+
T Consensus 85 a~~~~~~~~~~ 95 (104)
T 1p1t_A 85 AASEKNKEELK 95 (104)
T ss_dssp TTCTTHHHHHH
T ss_pred CCCccchhhhc
Confidence 99887655443
No 90
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=129.52 Aligned_cols=85 Identities=25% Similarity=0.475 Sum_probs=78.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
...+.++|||.|||+++++++|+++|++||.|..|.|+.++.++++++||||+|.+.++|++||+. +...+.+++|.|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 345568999999999999999999999999999999999999999999999999999999999985 9999999999999
Q ss_pred eccchH
Q psy16454 174 KALSKE 179 (304)
Q Consensus 174 ~~~~~~ 179 (304)
++.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997753
No 91
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=5.2e-19 Score=131.42 Aligned_cols=86 Identities=26% Similarity=0.454 Sum_probs=78.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCccc---CCee
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLV---KGKK 169 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~---~g~~ 169 (304)
....+.++|||.|||+++++++|+++|++||.|..|.|+.++.++++++||||+|.+.++|++||+. +...+ .+++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3445668999999999999999999999999999999999999999999999999999999999975 77776 8899
Q ss_pred EEEeeccchH
Q psy16454 170 VDVKKALSKE 179 (304)
Q Consensus 170 i~v~~~~~~~ 179 (304)
|.|+++.++.
T Consensus 88 l~v~~a~~~~ 97 (106)
T 2dgp_A 88 IQVKPADSES 97 (106)
T ss_dssp CEEEECCCCS
T ss_pred EEEEECCccc
Confidence 9999997764
No 92
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=2e-18 Score=130.19 Aligned_cols=89 Identities=22% Similarity=0.436 Sum_probs=81.3
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
.++.+.++|||+|||+++|+++|+++|++||.|.+|.|+.++.++++++||||+|.++++|++|++. +...+.++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4567889999999999999999999999999999999999988999999999999999999999985 578899999999
Q ss_pred ccCCCccccC
Q psy16454 82 KRAVPRTEIN 91 (304)
Q Consensus 82 ~~~~~~~~~~ 91 (304)
.++.++....
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9988765543
No 93
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=129.16 Aligned_cols=88 Identities=22% Similarity=0.358 Sum_probs=80.5
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
.++.+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.++++|++|++. +...+.++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3567889999999999999999999999999999999999999999999999999999999999995 578899999999
Q ss_pred ccCCCcccc
Q psy16454 82 KRAVPRTEI 90 (304)
Q Consensus 82 ~~~~~~~~~ 90 (304)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 998876543
No 94
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6e-19 Score=130.24 Aligned_cols=82 Identities=13% Similarity=0.178 Sum_probs=75.8
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeecccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKR 83 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~ 83 (304)
.+.+.++|||+|||+++|+++|+++|++||+|.+|.|+.++. ++++|||||+|+++++|++|++.+.+.+.++.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456789999999999999999999999999999999999977 9999999999999999999999778899999999887
Q ss_pred CCC
Q psy16454 84 AVP 86 (304)
Q Consensus 84 ~~~ 86 (304)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 654
No 95
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=126.03 Aligned_cols=81 Identities=22% Similarity=0.459 Sum_probs=75.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
..+.++|||.|||+++++++|+++|++||.|..|.|+.++.++++++||||+|+++++|++|++. +...+.+++|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999965 89999999999998
Q ss_pred cc
Q psy16454 175 AL 176 (304)
Q Consensus 175 ~~ 176 (304)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 96
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=129.98 Aligned_cols=82 Identities=20% Similarity=0.292 Sum_probs=75.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeecc
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKAL 176 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~ 176 (304)
....+|||.|||+++|+++|+++|++| .|++|.|+.++. ++++|||||+|+++++|++||+++.+.|+++.|+|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 345799999999999999999999999 999999999875 899999999999999999999889999999999999887
Q ss_pred chHH
Q psy16454 177 SKEE 180 (304)
Q Consensus 177 ~~~~ 180 (304)
.++-
T Consensus 92 ~~~~ 95 (109)
T 2dnn_A 92 ERQW 95 (109)
T ss_dssp HHHH
T ss_pred ccch
Confidence 6643
No 97
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.4e-18 Score=126.49 Aligned_cols=89 Identities=21% Similarity=0.290 Sum_probs=79.9
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhh-CCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCC-cCCeee
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEA-WGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHT-IDSKVV 79 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~-~~g~~i 79 (304)
.++.+.++|||+|||+++|+++|+++|++ ||+|.+|.|+.++ ++++++||||+|.+.++|++|++.+ ... +.++.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 35678899999999999999999999999 9999999999998 8999999999999999999999964 667 899999
Q ss_pred ccccCCCccccCC
Q psy16454 80 EPKRAVPRTEINR 92 (304)
Q Consensus 80 ~~~~~~~~~~~~~ 92 (304)
.+.++.++.....
T Consensus 83 ~v~~a~~~~~~~~ 95 (104)
T 2dhg_A 83 RLSVAIPKASRVK 95 (104)
T ss_dssp CCCBCCCCCSCCC
T ss_pred EEEEccCCCcCCC
Confidence 9999887665443
No 98
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.7e-19 Score=132.06 Aligned_cols=86 Identities=29% Similarity=0.408 Sum_probs=79.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCcee--------EEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCccc
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVT--------SVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLV 165 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~--------~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~ 165 (304)
...+.++|||.|||+++++++|+++|++||.|. .|.|+.++.++++++||||+|.+.++|++||+. +...|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 445678999999999999999999999999999 699999989999999999999999999999985 99999
Q ss_pred CCeeEEEeeccchHH
Q psy16454 166 KGKKVDVKKALSKEE 180 (304)
Q Consensus 166 ~g~~i~v~~~~~~~~ 180 (304)
.+++|+|+++.++..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987654
No 99
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=131.24 Aligned_cols=83 Identities=29% Similarity=0.553 Sum_probs=76.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
..+.++|||+|||+++++++|+++|++||.|+.|.|+.++ ++++++||||+|++.++|++||+. ++..+++++|.|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999988 899999999999999999999976 89999999999999
Q ss_pred ccchH
Q psy16454 175 ALSKE 179 (304)
Q Consensus 175 ~~~~~ 179 (304)
+.++.
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 97654
No 100
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=1.5e-18 Score=126.63 Aligned_cols=83 Identities=18% Similarity=0.396 Sum_probs=78.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccc
Q psy16454 99 VKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALS 177 (304)
Q Consensus 99 ~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~ 177 (304)
.++|||+|||+++++++|+++|++||.|.+|.|+.++.++++++||||+|.+.++|++|++. ++..++++.|.|+++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999998999999999999999999999965 99999999999999987
Q ss_pred hHHH
Q psy16454 178 KEEM 181 (304)
Q Consensus 178 ~~~~ 181 (304)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7654
No 101
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=4.8e-19 Score=123.06 Aligned_cols=75 Identities=45% Similarity=0.747 Sum_probs=72.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeec
Q psy16454 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKA 175 (304)
Q Consensus 101 ~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~ 175 (304)
+|||+|||+++++++|+++|++||.|.+|.++.++.++++++||||+|.++++|++|++++...+++++|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999999998999999999999999999999998999999999999875
No 102
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=125.81 Aligned_cols=84 Identities=26% Similarity=0.408 Sum_probs=77.3
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeE--------EEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCc
Q psy16454 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTS--------VALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTH 163 (304)
Q Consensus 93 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~--------v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~ 163 (304)
+....+..+|||+|||+++++++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|++|++. ++.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344456789999999999999999999999999999 99999999999999999999999999999975 999
Q ss_pred ccCCeeEEEeecc
Q psy16454 164 LVKGKKVDVKKAL 176 (304)
Q Consensus 164 ~~~g~~i~v~~~~ 176 (304)
.+.+++|+|+++.
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999873
No 103
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=128.71 Aligned_cols=88 Identities=25% Similarity=0.340 Sum_probs=80.6
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
.++...++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.++++|++|++. +...+.++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4567889999999999999999999999999999999999998999999999999999999999996 578899999999
Q ss_pred ccCCCcccc
Q psy16454 82 KRAVPRTEI 90 (304)
Q Consensus 82 ~~~~~~~~~ 90 (304)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 998876543
No 104
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=2e-18 Score=128.03 Aligned_cols=83 Identities=25% Similarity=0.382 Sum_probs=76.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCC---eeEEE
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKG---KKVDV 172 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g---~~i~v 172 (304)
.+.++|||.|||+++++++|+++|++||.|+.|.|+.++ ++++++||||+|.+.++|++||+. +...+.+ ++|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 456899999999999999999999999999999999987 789999999999999999999975 8888888 99999
Q ss_pred eeccchHH
Q psy16454 173 KKALSKEE 180 (304)
Q Consensus 173 ~~~~~~~~ 180 (304)
+++.++.+
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99987654
No 105
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.9e-19 Score=129.74 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=75.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeE-EEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTS-VALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~-v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 174 (304)
.....+|||.|||+++|+++|+++|++||.|.. |.|+.+ .+++++|||||+|+++++|++||+++...|.++.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 345679999999999999999999999999987 888887 789999999999999999999999888999999999988
Q ss_pred ccchH
Q psy16454 175 ALSKE 179 (304)
Q Consensus 175 ~~~~~ 179 (304)
+..++
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 86543
No 106
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=127.37 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=73.0
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC---CCCcCCeeec
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR---PHTIDSKVVE 80 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~---~~~~~g~~i~ 80 (304)
.+.+.++|||+|||+++|+++|+++|++||+|++|+|+++ |+||||+|+++++|++|++.+ ...+.++.|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4678899999999999999999999999999999999875 689999999999999999853 3679999999
Q ss_pred cccCCCccccC
Q psy16454 81 PKRAVPRTEIN 91 (304)
Q Consensus 81 ~~~~~~~~~~~ 91 (304)
|.++.++....
T Consensus 86 V~~A~~~~~~~ 96 (105)
T 1sjq_A 86 IQFSNHKELKT 96 (105)
T ss_dssp BCCCSSSSCCC
T ss_pred EEEcCCCCCCc
Confidence 99988765443
No 107
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=1.9e-18 Score=127.71 Aligned_cols=87 Identities=16% Similarity=0.307 Sum_probs=79.5
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPK 82 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~ 82 (304)
..+.+.++|||+|||+++|+++|+++|++|+ |.+|.|+.++.++++++||||+|+++++|++|++++...+.++.|.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVD 88 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEE
Confidence 3456789999999999999999999999996 999999999999999999999999999999999777899999999999
Q ss_pred cCCCcccc
Q psy16454 83 RAVPRTEI 90 (304)
Q Consensus 83 ~~~~~~~~ 90 (304)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 98876543
No 108
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.3e-19 Score=129.98 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=75.7
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPK 82 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~ 82 (304)
..+...++|||+|||+++|+++|+++|++|+.| +|+|+.++ ++++++||||+|+++++|++||+++.+.|.++.|.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 87 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence 356778999999999999999999999999955 99999997 8999999999999999999999888889999999988
Q ss_pred cCCCcc
Q psy16454 83 RAVPRT 88 (304)
Q Consensus 83 ~~~~~~ 88 (304)
++.+..
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 766544
No 109
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=2.6e-18 Score=130.20 Aligned_cols=84 Identities=23% Similarity=0.281 Sum_probs=77.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCc---eeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEE
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGE---VTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDV 172 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~---v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 172 (304)
....++|||+|||+++|+++|+++|++|+. |..|.|+.++. ++++|||||+|+++++|++||+++.+.|+++.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 345679999999999999999999999998 89999999886 89999999999999999999999999999999999
Q ss_pred eeccchHH
Q psy16454 173 KKALSKEE 180 (304)
Q Consensus 173 ~~~~~~~~ 180 (304)
.++..++.
T Consensus 93 ~~a~~~~~ 100 (118)
T 2db1_A 93 FKSHRTEM 100 (118)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99976653
No 110
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=1.9e-18 Score=124.14 Aligned_cols=81 Identities=23% Similarity=0.516 Sum_probs=76.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeeccc
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALS 177 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~~ 177 (304)
..++|||.|||+++++++|+++|++||.|..|.++.++.++++++||||+|.++++|++|+..+...+.+++|+|+++.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 35799999999999999999999999999999999998899999999999999999999996699999999999999865
Q ss_pred h
Q psy16454 178 K 178 (304)
Q Consensus 178 ~ 178 (304)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 111
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=123.93 Aligned_cols=82 Identities=21% Similarity=0.420 Sum_probs=74.4
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccccC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKRA 84 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~~ 84 (304)
.+.++|||+|||.++|+++|+++|++||+|.+|.++.++.++++++||||+|.+.++|++|++. +...+.++.|.+.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4678999999999999999999999999999999999988999999999999999999999995 678899999999888
Q ss_pred CCc
Q psy16454 85 VPR 87 (304)
Q Consensus 85 ~~~ 87 (304)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 112
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=1.3e-18 Score=131.18 Aligned_cols=80 Identities=26% Similarity=0.517 Sum_probs=73.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccc
Q psy16454 99 VKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALS 177 (304)
Q Consensus 99 ~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~ 177 (304)
..+|||+|||+++|+++|+++|++||.|++|+|+.++ ..++|||||+|+++++|++||+. +...|++++|.|+++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999985 35899999999999999999976 99999999999999876
Q ss_pred hHH
Q psy16454 178 KEE 180 (304)
Q Consensus 178 ~~~ 180 (304)
+.+
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 113
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=124.79 Aligned_cols=83 Identities=30% Similarity=0.463 Sum_probs=75.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
....+.++|||.|||+++++++|+++|++||.|+.|.|+.++. +++++||||+|+++++|++||+. +...+++++|+|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 3345668999999999999999999999999999999999875 88999999999999999999985 999999999999
Q ss_pred eeccc
Q psy16454 173 KKALS 177 (304)
Q Consensus 173 ~~~~~ 177 (304)
+++.+
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 98753
No 114
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=127.66 Aligned_cols=87 Identities=32% Similarity=0.614 Sum_probs=79.3
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
.+.+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.++++|++|++. +...+.++.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 456889999999999999999999999999999999999998999999999999999999999955 6788999999999
Q ss_pred cCCCcccc
Q psy16454 83 RAVPRTEI 90 (304)
Q Consensus 83 ~~~~~~~~ 90 (304)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 88765543
No 115
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=1.4e-18 Score=129.91 Aligned_cols=86 Identities=23% Similarity=0.417 Sum_probs=79.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
....+.++|||.|||+++++++|+++|++||.|..|.|+.++.++++++||||+|.+.++|++||+. ++..+++++|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3345668999999999999999999999999999999999999999999999999999999999985 999999999999
Q ss_pred eeccchH
Q psy16454 173 KKALSKE 179 (304)
Q Consensus 173 ~~~~~~~ 179 (304)
+++.++.
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9997754
No 116
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=126.83 Aligned_cols=85 Identities=27% Similarity=0.415 Sum_probs=76.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHH-hCCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACL-KGTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 172 (304)
....+.++|||.|||+++++++|+++|++||.|+.|.|+.++.+ +++||||+|.++++|++||+ ++...|.+++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34456789999999999999999999999999999999988644 68999999999999999998 4999999999999
Q ss_pred eeccchHH
Q psy16454 173 KKALSKEE 180 (304)
Q Consensus 173 ~~~~~~~~ 180 (304)
+++.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqi_A 88 NWATTPSS 95 (103)
T ss_dssp EECCCTTC
T ss_pred EECCCCcc
Confidence 99987643
No 117
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.9e-18 Score=126.71 Aligned_cols=85 Identities=31% Similarity=0.586 Sum_probs=76.7
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
....+.++|||.|||+++++++|+++|++||.|..|.|+.++. .+++||||+|.+.++|++||+. +...|++++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4445678999999999999999999999999999999998864 3899999999999999999985 999999999999
Q ss_pred eeccchHH
Q psy16454 173 KKALSKEE 180 (304)
Q Consensus 173 ~~~~~~~~ 180 (304)
+++.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99987654
No 118
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=125.24 Aligned_cols=84 Identities=23% Similarity=0.425 Sum_probs=77.7
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
.++.+.++|||+|||+++|+++|+++|++||+|.+|.++.++.++++++||||+|+++++|++|++. +...+.++.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4567889999999999999999999999999999999999999999999999999999999999995 678899999999
Q ss_pred ccCCC
Q psy16454 82 KRAVP 86 (304)
Q Consensus 82 ~~~~~ 86 (304)
.++.+
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 88753
No 119
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.2e-19 Score=132.87 Aligned_cols=86 Identities=59% Similarity=1.035 Sum_probs=80.1
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAV 85 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~ 85 (304)
.+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.++++|++||+.+.+.|.++.|.|.++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 45689999999999999999999999999999999999999999999999999999999999998888999999999998
Q ss_pred CccccC
Q psy16454 86 PRTEIN 91 (304)
Q Consensus 86 ~~~~~~ 91 (304)
++....
T Consensus 105 ~~~~~~ 110 (116)
T 1x4b_A 105 AREESG 110 (116)
T ss_dssp SCCCCC
T ss_pred CCccCC
Confidence 776543
No 120
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=128.21 Aligned_cols=87 Identities=24% Similarity=0.508 Sum_probs=80.2
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeec
Q psy16454 2 TKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVE 80 (304)
Q Consensus 2 ~~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~ 80 (304)
++.+...++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.+.++|++|++ .+...+.++.|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4566788999999999999999999999999999999999999999999999999999999999997 468889999999
Q ss_pred cccCCCcc
Q psy16454 81 PKRAVPRT 88 (304)
Q Consensus 81 ~~~~~~~~ 88 (304)
|.++.++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99987654
No 121
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=128.38 Aligned_cols=86 Identities=17% Similarity=0.369 Sum_probs=78.7
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCC-CCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQT-KKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~ 82 (304)
.+.+.++|||+|||+++|+++|+++|++|| |.+|.|+.++.+ +++++||||+|+++++|++||.++...+.++.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVD 89 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEE
Confidence 446779999999999999999999999999 999999999887 899999999999999999999667889999999999
Q ss_pred cCCCcccc
Q psy16454 83 RAVPRTEI 90 (304)
Q Consensus 83 ~~~~~~~~ 90 (304)
++.++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 98876554
No 122
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=126.16 Aligned_cols=86 Identities=26% Similarity=0.441 Sum_probs=79.0
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEE-EEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDV-VVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v-~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
+.+.++|||+|||+++|+++|+++|++||+|.+| .|+.++.++++++||||+|+++++|++|++. +...+.++.|.|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4578999999999999999999999999999999 9999988999999999999999999999995 5788999999999
Q ss_pred cCCCcccc
Q psy16454 83 RAVPRTEI 90 (304)
Q Consensus 83 ~~~~~~~~ 90 (304)
++.++...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 98876543
No 123
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=3e-18 Score=121.33 Aligned_cols=81 Identities=26% Similarity=0.443 Sum_probs=75.7
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccccCCC
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKRAVP 86 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~~~~ 86 (304)
+.+|||+|||+++|+++|+++|++||+|.+|.++.++.++++++||||+|.++++|++|++. +...+.++.|.+.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999999999999999999999999999995 68889999999999876
Q ss_pred cc
Q psy16454 87 RT 88 (304)
Q Consensus 87 ~~ 88 (304)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 124
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=1.7e-18 Score=133.23 Aligned_cols=85 Identities=26% Similarity=0.422 Sum_probs=78.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
...+.++|||.|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+. +...|++++|.|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345668999999999999999999999999999999999999999999999999999999999985 9999999999999
Q ss_pred eccchH
Q psy16454 174 KALSKE 179 (304)
Q Consensus 174 ~~~~~~ 179 (304)
++.++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 997653
No 125
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=123.92 Aligned_cols=82 Identities=20% Similarity=0.393 Sum_probs=76.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeec
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKA 175 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~ 175 (304)
.....+|||.|||+++++++|+++|++| .|..|.|+.+ .+++++|||||+|+++++|++||+++...|.++.|+|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEEC
Confidence 3456799999999999999999999999 9999999998 7899999999999999999999999889999999999998
Q ss_pred cchH
Q psy16454 176 LSKE 179 (304)
Q Consensus 176 ~~~~ 179 (304)
.+++
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7663
No 126
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.7e-18 Score=126.97 Aligned_cols=88 Identities=16% Similarity=0.352 Sum_probs=80.4
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeC-CCCCCcccEEEEEeCCHHHHHHHHHh--CCCCcCCeee
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKD-PQTKKSRGFGFITYSSAHMVDDAQAA--RPHTIDSKVV 79 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~~~~kG~aFV~f~~~e~a~~al~~--~~~~~~g~~i 79 (304)
..+...++|||+|||+++|+++|+++|++||+|.+|.|+.+ +.++++++||||+|.++++|++|++. +...+.++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 35568899999999999999999999999999999999998 78999999999999999999999987 5889999999
Q ss_pred ccccCCCcccc
Q psy16454 80 EPKRAVPRTEI 90 (304)
Q Consensus 80 ~~~~~~~~~~~ 90 (304)
.|.++.++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99998876543
No 127
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=126.07 Aligned_cols=86 Identities=28% Similarity=0.424 Sum_probs=78.0
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCC---CCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeec
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQ---TKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVE 80 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~ 80 (304)
+.+.++|||+|||+++|+++|+++|++||+|.+|.|+.++. ++++++||||+|.++++|++|++. +.+.+.++.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 35789999999999999999999999999999999999876 668999999999999999999996 57889999999
Q ss_pred cccCCCcccc
Q psy16454 81 PKRAVPRTEI 90 (304)
Q Consensus 81 ~~~~~~~~~~ 90 (304)
|.++.++...
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9998876543
No 128
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=133.38 Aligned_cols=85 Identities=15% Similarity=0.239 Sum_probs=78.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeec
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKA 175 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~ 175 (304)
.....+|||.|||+++|+++|+++|++||.|..+.++.+..+++++|||||+|++.++|++||+++...|+++.|+|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 44568999999999999999999999999999877777778999999999999999999999999999999999999999
Q ss_pred cchHH
Q psy16454 176 LSKEE 180 (304)
Q Consensus 176 ~~~~~ 180 (304)
..++.
T Consensus 102 ~~~~~ 106 (124)
T 1wel_A 102 TKKGM 106 (124)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 87764
No 129
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=125.47 Aligned_cols=84 Identities=21% Similarity=0.379 Sum_probs=77.2
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
.+.+.++|||+|||+++|+++|+++|++||+|.+|.|+.++ ++++++||||+|.++++|++|++. +...+.++.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999999999999999999999999999999999997 899999999999999999999965 6788999999999
Q ss_pred cCCCcc
Q psy16454 83 RAVPRT 88 (304)
Q Consensus 83 ~~~~~~ 88 (304)
++.++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 987654
No 130
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=125.78 Aligned_cols=83 Identities=24% Similarity=0.413 Sum_probs=77.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCcee-EEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCee----
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVT-SVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKK---- 169 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~-~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~---- 169 (304)
..+.++|||.|||+++++++|+++|++||.|. .|.|+.++.++++++||||+|.++++|++|++. +...+.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34668999999999999999999999999999 999999999999999999999999999999985 889999999
Q ss_pred EEEeeccch
Q psy16454 170 VDVKKALSK 178 (304)
Q Consensus 170 i~v~~~~~~ 178 (304)
|+|+++.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999888654
No 131
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=2.7e-18 Score=127.52 Aligned_cols=87 Identities=26% Similarity=0.405 Sum_probs=78.5
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCc---CCee
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTI---DSKV 78 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~---~g~~ 78 (304)
..+.+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.++++|++|++. +...+ .++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 4567889999999999999999999999999999999999999999999999999999999999985 45566 7899
Q ss_pred eccccCCCccc
Q psy16454 79 VEPKRAVPRTE 89 (304)
Q Consensus 79 i~~~~~~~~~~ 89 (304)
|.|.++.++..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99998876654
No 132
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=127.46 Aligned_cols=88 Identities=24% Similarity=0.399 Sum_probs=80.4
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
.+.+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.++++|++|++. +...+.++.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999975 6888999999999
Q ss_pred cCCCccccC
Q psy16454 83 RAVPRTEIN 91 (304)
Q Consensus 83 ~~~~~~~~~ 91 (304)
++.++....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2cqb_A 88 LAKPMRIKE 96 (102)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 988765443
No 133
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=3.3e-18 Score=131.58 Aligned_cols=86 Identities=22% Similarity=0.436 Sum_probs=79.6
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
.++++.++|||+|||+++|+++|+++|++||+|.+|+|+.++.++++++||||+|.+.++|++|++. +...|.++.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4567889999999999999999999999999999999999999999999999999999999999995 678899999999
Q ss_pred ccCCCcc
Q psy16454 82 KRAVPRT 88 (304)
Q Consensus 82 ~~~~~~~ 88 (304)
.++.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9987654
No 134
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.76 E-value=1.6e-18 Score=132.20 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=74.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCcee--EEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEee
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVT--SVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKK 174 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~--~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 174 (304)
....+|||+|||+++|+++|+++|++| .|+ .|.|+.|+. ++++|||||+|+++++|++||++++..|+++.|+|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 456789999999999999999999999 677 899999887 9999999999999999999999888999999999998
Q ss_pred ccchH
Q psy16454 175 ALSKE 179 (304)
Q Consensus 175 ~~~~~ 179 (304)
+..++
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 86554
No 135
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=3.2e-18 Score=129.64 Aligned_cols=83 Identities=28% Similarity=0.408 Sum_probs=76.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
....+.++|||.|||+++++++|+++|++||.|++|.|+.++.++++++||||+|.+.++|++||+. +...+++++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3345668999999999999999999999999999999999998999999999999999999999986 899999999999
Q ss_pred eecc
Q psy16454 173 KKAL 176 (304)
Q Consensus 173 ~~~~ 176 (304)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9873
No 136
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=124.97 Aligned_cols=85 Identities=13% Similarity=0.264 Sum_probs=76.7
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCcee-EEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCee--
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVV-DVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKV-- 78 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~-- 78 (304)
..+..+++|||+|||+++|+++|+++|++||+|. +|+|+.++.++++++||||+|.++++|++|++. +...+.++.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 4567889999999999999999999999999999 999999999999999999999999999999995 567788888
Q ss_pred --eccccCCCc
Q psy16454 79 --VEPKRAVPR 87 (304)
Q Consensus 79 --i~~~~~~~~ 87 (304)
|.+.++.+.
T Consensus 84 ~~l~v~~a~~~ 94 (99)
T 2div_A 84 KRFKLNYATYS 94 (99)
T ss_dssp EECCEEETTCC
T ss_pred eeEEEeecCCC
Confidence 777776644
No 137
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=6.8e-19 Score=122.25 Aligned_cols=75 Identities=44% Similarity=0.747 Sum_probs=71.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeec
Q psy16454 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKA 175 (304)
Q Consensus 101 ~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~ 175 (304)
+|||+|||+++++++|+++|++||+|.+|.++.++.++++++||||+|+++++|++|++.+.+.+++++|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999999889999999999875
No 138
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=6.1e-19 Score=129.69 Aligned_cols=85 Identities=26% Similarity=0.445 Sum_probs=74.0
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeC-CCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEE
Q psy16454 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEK-ETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVD 171 (304)
Q Consensus 93 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~ 171 (304)
+......++|||+|||+++++++|+++|++|| |.+|.|+.++ .+++++|||||+|.+.++|++||+++...|+++.|+
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~ 91 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIR 91 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEE
Confidence 34455678999999999999999999999999 9999999998 689999999999999999999996699999999999
Q ss_pred Eeeccch
Q psy16454 172 VKKALSK 178 (304)
Q Consensus 172 v~~~~~~ 178 (304)
|+++.++
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9998765
No 139
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=126.95 Aligned_cols=84 Identities=14% Similarity=0.300 Sum_probs=77.2
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
..+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.+.++|++|++. +.+.+.++.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45678899999999999999999999999999999999999999999999999999999999985 68889999999988
Q ss_pred CCCcc
Q psy16454 84 AVPRT 88 (304)
Q Consensus 84 ~~~~~ 88 (304)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 76543
No 140
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=2.5e-18 Score=123.50 Aligned_cols=82 Identities=22% Similarity=0.457 Sum_probs=76.5
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAV 85 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~ 85 (304)
.+.++|||+|||+++|+++|+++|++||+|.+|.++.++.++++++||||+|.++++|++|+.++...+.++.|.+.++.
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETT
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEcc
Confidence 35789999999999999999999999999999999999989999999999999999999999777899999999998886
Q ss_pred Cc
Q psy16454 86 PR 87 (304)
Q Consensus 86 ~~ 87 (304)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 141
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=127.62 Aligned_cols=96 Identities=21% Similarity=0.381 Sum_probs=81.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccccCCCc
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKRAVPR 87 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~~~~~ 87 (304)
++|||+|||+++|+++|+++|++||+|.+|.++.+ +++||||+|+++++|++|++. +...+.++.|.|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999986 789999999999999999995 577899999999998876
Q ss_pred cccCC----CCCCCCcceEEEcCCCC
Q psy16454 88 TEINR----PEAGATVKKLFVGSLRD 109 (304)
Q Consensus 88 ~~~~~----~~~~~~~~~l~v~~l~~ 109 (304)
..... +.......+|||++|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCCC
Confidence 54322 12223367899999963
No 142
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=5.8e-18 Score=125.93 Aligned_cols=81 Identities=21% Similarity=0.354 Sum_probs=75.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
...+.++|||.|||+++++++|+++|++||.|+.|.|+.++ ++++++||||+|.+.++|++||+. +...+.+++|+|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999986 9999999999999
Q ss_pred ecc
Q psy16454 174 KAL 176 (304)
Q Consensus 174 ~~~ 176 (304)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 143
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=126.61 Aligned_cols=84 Identities=17% Similarity=0.252 Sum_probs=75.9
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeE-EEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVD-VVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~-v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~ 82 (304)
++...++|||+|||+++|+++|+++|++||.|.+ |.|+.+ .+++++|||||+|+++++|++||+.+.+.+.++.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEE
Confidence 3467899999999999999999999999999987 888887 78999999999999999999999998889999999988
Q ss_pred cCCCcc
Q psy16454 83 RAVPRT 88 (304)
Q Consensus 83 ~~~~~~ 88 (304)
++.+++
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 776543
No 144
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=4.7e-18 Score=123.60 Aligned_cols=82 Identities=24% Similarity=0.378 Sum_probs=75.2
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~~ 81 (304)
..+++.++|||+|||+++|+++|+++|++||+|.+|.|+.++. +++++||||+|.++++|++|++ ++.+.+.++.|.|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 4567889999999999999999999999999999999999975 8899999999999999999999 4688899999999
Q ss_pred ccCC
Q psy16454 82 KRAV 85 (304)
Q Consensus 82 ~~~~ 85 (304)
.++.
T Consensus 90 ~~a~ 93 (95)
T 2ywk_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 8875
No 145
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=131.54 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=74.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCce----eEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEe
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEV----TSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVK 173 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v----~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 173 (304)
...+|||.|||+++|+++|+++|++|+.| ..|.|+.+ .+++++|||||+|+++++|++||+++.+.|.++.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45799999999999999999999999875 68999988 48999999999999999999999998899999999999
Q ss_pred eccchHH
Q psy16454 174 KALSKEE 180 (304)
Q Consensus 174 ~~~~~~~ 180 (304)
.+..++.
T Consensus 101 ~a~~~e~ 107 (123)
T 2dha_A 101 RSTAAEV 107 (123)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 8876653
No 146
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.9e-18 Score=125.00 Aligned_cols=86 Identities=23% Similarity=0.386 Sum_probs=78.4
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
.++.+.++|||+|||+++|+++|+++|++||+|.+|.|+.+ ++++++||||+|.+.++|++|++. +...+.++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34568899999999999999999999999999999999997 789999999999999999999985 688899999999
Q ss_pred ccCCCcccc
Q psy16454 82 KRAVPRTEI 90 (304)
Q Consensus 82 ~~~~~~~~~ 90 (304)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2d9p_A 88 ALAQRKEER 96 (103)
T ss_dssp EECSSCCCC
T ss_pred EEecccccC
Confidence 998876544
No 147
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=120.78 Aligned_cols=76 Identities=42% Similarity=0.687 Sum_probs=72.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeec
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKA 175 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~ 175 (304)
++|||+|||+++++++|+++|++||+|..|.++.++.++++++||||+|.++++|++|++..+..+++++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 3799999999999999999999999999999999998999999999999999999999998559999999999987
No 148
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=5.7e-18 Score=134.49 Aligned_cols=82 Identities=22% Similarity=0.360 Sum_probs=76.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCC--ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFG--EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G--~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
..++|||+|||+++|+++|+++|++|| .|.+|.|+.|+.+++++|||||+|.+.++|++||+. +...|+++.|.|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999988 89999999999999
Q ss_pred ccchH
Q psy16454 175 ALSKE 179 (304)
Q Consensus 175 ~~~~~ 179 (304)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 97654
No 149
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.7e-18 Score=126.42 Aligned_cols=83 Identities=24% Similarity=0.400 Sum_probs=73.7
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEE
Q psy16454 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVD 171 (304)
Q Consensus 93 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~ 171 (304)
+....+.++|||.|||+++|+++|+++|++||.|+.|.|..+ .++++||||+|++.++|++||+. +...|++++|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344456689999999999999999999999999999999654 45889999999999999999955 99999999999
Q ss_pred Eeeccch
Q psy16454 172 VKKALSK 178 (304)
Q Consensus 172 v~~~~~~ 178 (304)
|+++.++
T Consensus 93 V~~a~~~ 99 (109)
T 1x4a_A 93 VEFPRSG 99 (109)
T ss_dssp EECCCCC
T ss_pred EEEcccC
Confidence 9998765
No 150
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=3.4e-18 Score=121.68 Aligned_cols=81 Identities=25% Similarity=0.433 Sum_probs=75.0
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
.+.+.++|||+|||+++|+++|+++|++||+|.+|.++.++.++++++||||+|+++++|++|++. +...+.++.|.+.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 356789999999999999999999999999999999999988999999999999999999999954 7888999999887
Q ss_pred cC
Q psy16454 83 RA 84 (304)
Q Consensus 83 ~~ 84 (304)
++
T Consensus 83 ~a 84 (85)
T 3mdf_A 83 LA 84 (85)
T ss_dssp EC
T ss_pred Ec
Confidence 75
No 151
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.75 E-value=1.4e-18 Score=125.25 Aligned_cols=81 Identities=16% Similarity=0.298 Sum_probs=69.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCC--ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccccCC
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWG--DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKRAV 85 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~~~ 85 (304)
.+|||+|||+++|+++|+++|++|| .|.+|+++.++.+++++|||||+|.+.++|++|++. +...+.++.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999999999999999999999999999999965 5789999999999988
Q ss_pred Cccc
Q psy16454 86 PRTE 89 (304)
Q Consensus 86 ~~~~ 89 (304)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7654
No 152
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.4e-18 Score=125.87 Aligned_cols=83 Identities=12% Similarity=0.216 Sum_probs=76.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
....++|||.|||+++++++|+++|++||.|..+.++.++.++++++||||+|.++++|++||+. +...|.+++|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34557999999999999999999999999999998999989999999999999999999999965 88999999999999
Q ss_pred ccch
Q psy16454 175 ALSK 178 (304)
Q Consensus 175 ~~~~ 178 (304)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8654
No 153
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=123.81 Aligned_cols=81 Identities=23% Similarity=0.440 Sum_probs=74.9
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
.+.+.++|||+|||+++|+++|+++|++||+|.+|.++.++.++++++||||+|+++++|++|++. +...+.++.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999975 5778899999887
Q ss_pred cC
Q psy16454 83 RA 84 (304)
Q Consensus 83 ~~ 84 (304)
++
T Consensus 92 ~a 93 (94)
T 2e5h_A 92 IA 93 (94)
T ss_dssp EC
T ss_pred ec
Confidence 75
No 154
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.2e-18 Score=126.67 Aligned_cols=78 Identities=19% Similarity=0.297 Sum_probs=69.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-C--CcccCCeeEEEe
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-G--THLVKGKKVDVK 173 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~--~~~~~g~~i~v~ 173 (304)
.+.++|||+|||+++|+++|+++|++||.|++|.|+++ |+||||+|++.++|++||+. + ...|.+++|.|+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45679999999999999999999999999999999864 68999999999999999984 3 478999999999
Q ss_pred eccchHH
Q psy16454 174 KALSKEE 180 (304)
Q Consensus 174 ~~~~~~~ 180 (304)
++.+++.
T Consensus 88 ~A~~~~~ 94 (105)
T 1sjq_A 88 FSNHKEL 94 (105)
T ss_dssp CCSSSSC
T ss_pred EcCCCCC
Confidence 9977643
No 155
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.1e-18 Score=127.53 Aligned_cols=88 Identities=16% Similarity=0.244 Sum_probs=80.3
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCcee--------EEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCC
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVV--------DVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHT 73 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~--------~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~ 73 (304)
.++.+.++|||+|||+++|+++|+++|++||.|. .|+|+.++.++++++||||+|.++++|++|++. +.+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3556889999999999999999999999999998 699999989999999999999999999999985 6888
Q ss_pred cCCeeeccccCCCcccc
Q psy16454 74 IDSKVVEPKRAVPRTEI 90 (304)
Q Consensus 74 ~~g~~i~~~~~~~~~~~ 90 (304)
+.++.|.|.++.++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999998876543
No 156
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.9e-18 Score=120.01 Aligned_cols=75 Identities=41% Similarity=0.716 Sum_probs=70.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccC
Q psy16454 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRA 84 (304)
Q Consensus 10 ~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~ 84 (304)
+|||+|||+++|+++|+++|++||+|.+|.++.++.++++++||||+|.++++|++|++++.+.+.++.+.++++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999988999999999999999999999998889999999888764
No 157
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=1.5e-17 Score=127.17 Aligned_cols=85 Identities=22% Similarity=0.357 Sum_probs=78.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
.....++|||.|||+++++++|+++|++||.|+.|.|+.++ ++++++||||+|.+.++|++|++. +...+++++|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44566899999999999999999999999999999999998 899999999999999999999985 9999999999999
Q ss_pred eccchHH
Q psy16454 174 KALSKEE 180 (304)
Q Consensus 174 ~~~~~~~ 180 (304)
++.+...
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9977543
No 158
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=8.8e-18 Score=124.49 Aligned_cols=85 Identities=26% Similarity=0.346 Sum_probs=76.3
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCC---eeec
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDS---KVVE 80 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g---~~i~ 80 (304)
+...++|||+|||+++|+++|+++|++||+|.+|.|+.++ ++++++||||+|.+.++|++|++. +...+.+ +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4568999999999999999999999999999999999997 789999999999999999999985 5677777 8999
Q ss_pred cccCCCcccc
Q psy16454 81 PKRAVPRTEI 90 (304)
Q Consensus 81 ~~~~~~~~~~ 90 (304)
|.++.++...
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9988876543
No 159
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=1.9e-18 Score=131.77 Aligned_cols=83 Identities=17% Similarity=0.348 Sum_probs=74.9
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCcee--EEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeec
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVV--DVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVE 80 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~--~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~ 80 (304)
.++...++|||+|||+++|+++|+++|++| .|+ +|+|+.++. ++++|||||+|+++++|++||+.+...|.++.|.
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEE
Confidence 345678899999999999999999999999 677 899999877 9999999999999999999999988999999999
Q ss_pred cccCCCc
Q psy16454 81 PKRAVPR 87 (304)
Q Consensus 81 ~~~~~~~ 87 (304)
|.++.++
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 8877544
No 160
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=123.09 Aligned_cols=87 Identities=22% Similarity=0.494 Sum_probs=77.7
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
..+.+.++|||+|||+++|+++|+++|++||+|.+|.|+.++. .+++||||+|.+.++|++|++. +.+.+.++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4567889999999999999999999999999999999998864 3899999999999999999985 678899999999
Q ss_pred ccCCCccccC
Q psy16454 82 KRAVPRTEIN 91 (304)
Q Consensus 82 ~~~~~~~~~~ 91 (304)
.++.++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cq3_A 88 NNATARVMTN 97 (103)
T ss_dssp EECCSSCCCC
T ss_pred EEcccCCCCC
Confidence 9988765443
No 161
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=1.9e-18 Score=125.66 Aligned_cols=80 Identities=14% Similarity=0.250 Sum_probs=74.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeecc
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKAL 176 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~ 176 (304)
..++|||.|||+++++++|+++|++||.|..+.++.++.++++++||||+|.++++|++||+. +...|.+++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 457999999999999999999999999999999999999999999999999999999999985 9999999999999875
Q ss_pred c
Q psy16454 177 S 177 (304)
Q Consensus 177 ~ 177 (304)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 162
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.1e-19 Score=131.92 Aligned_cols=84 Identities=7% Similarity=0.054 Sum_probs=77.9
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCce-eEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDV-VDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v-~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~ 82 (304)
.+.+.++|||+|||+++|+++|+++|++|+.| .+|+|+.++ ++++++||||+|+++++|++||+.+.+.|.++.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 46678999999999999999999999999999 899999998 8999999999999999999999998889999999998
Q ss_pred cCCCcc
Q psy16454 83 RAVPRT 88 (304)
Q Consensus 83 ~~~~~~ 88 (304)
++.++.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 887654
No 163
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=126.28 Aligned_cols=85 Identities=34% Similarity=0.570 Sum_probs=78.2
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
++++.++|||+|||+++|+++|+++|++||+|++|.|+.++ ++++++||||+|++.++|++|++. +...+.++.|.|.
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 56788999999999999999999999999999999999997 899999999999999999999986 5788999999999
Q ss_pred cCCCccc
Q psy16454 83 RAVPRTE 89 (304)
Q Consensus 83 ~~~~~~~ 89 (304)
++.++..
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 8876554
No 164
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.8e-18 Score=120.66 Aligned_cols=76 Identities=46% Similarity=0.822 Sum_probs=72.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccC
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRA 84 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~ 84 (304)
++|||+|||+++|+++|+++|++||+|.+|.++.++.++++++||||+|.++++|++|++.+++.+.++.+.++++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5899999999999999999999999999999999998999999999999999999999999888899999988765
No 165
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=123.77 Aligned_cols=86 Identities=15% Similarity=0.232 Sum_probs=76.8
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~~ 81 (304)
.++...++|||+|||+++|+++|+++|++||+|.+|.|+.++.+ +++||||+|.++++|++|++ ++...+.++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 45678899999999999999999999999999999999998554 68999999999999999998 5678899999999
Q ss_pred ccCCCcccc
Q psy16454 82 KRAVPRTEI 90 (304)
Q Consensus 82 ~~~~~~~~~ 90 (304)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 998875543
No 166
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=4.4e-18 Score=121.88 Aligned_cols=81 Identities=20% Similarity=0.494 Sum_probs=75.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCC-ccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeec
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGK-KRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~-~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
..++|||.|||+++++++|+++|++||.|..|.|+.+..++. +++||||+|.+.++|++|++. ++..++++.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457999999999999999999999999999999999987666 899999999999999999985 999999999999998
Q ss_pred cch
Q psy16454 176 LSK 178 (304)
Q Consensus 176 ~~~ 178 (304)
.++
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 664
No 167
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=8.4e-18 Score=123.26 Aligned_cols=83 Identities=14% Similarity=0.217 Sum_probs=76.3
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeE--------EEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCC
Q psy16454 2 TKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVD--------VVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPH 72 (304)
Q Consensus 2 ~~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~ 72 (304)
+..+...++|||+|||+++|+++|+++|++||.|.+ |+++.++.++++++||||+|.+.++|++|++. +..
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345678899999999999999999999999999999 99999999999999999999999999999974 688
Q ss_pred CcCCeeeccccC
Q psy16454 73 TIDSKVVEPKRA 84 (304)
Q Consensus 73 ~~~g~~i~~~~~ 84 (304)
.+.++.|.|.++
T Consensus 87 ~~~g~~l~V~~A 98 (99)
T 2la6_A 87 EFSGNPIKVSFA 98 (99)
T ss_dssp BSSSSBCEEEEC
T ss_pred EeCCcEEEEEec
Confidence 899999888765
No 168
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=9.1e-18 Score=121.29 Aligned_cols=82 Identities=26% Similarity=0.443 Sum_probs=75.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
..+.++|||.|||+++++++|+++|++||.|..|.|+.+ ++++++||||+|.+.++|++|++. +...+++++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346689999999999999999999999999999999874 778999999999999999999986 99999999999999
Q ss_pred ccchH
Q psy16454 175 ALSKE 179 (304)
Q Consensus 175 ~~~~~ 179 (304)
+.+..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 97654
No 169
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=125.08 Aligned_cols=82 Identities=26% Similarity=0.342 Sum_probs=75.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
..+.++|||.|||+++++++|+++|++||.|++|.|+.++ ++++++||||+|++.++|++||+. +...|+++.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456899999999999999999999999999999999987 589999999999999999999985 99999999999999
Q ss_pred ccch
Q psy16454 175 ALSK 178 (304)
Q Consensus 175 ~~~~ 178 (304)
+...
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8654
No 170
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-18 Score=127.86 Aligned_cols=85 Identities=20% Similarity=0.226 Sum_probs=78.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCc---eeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEE
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGE---VTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDV 172 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~---v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 172 (304)
.....+|||+|||+++|+++|+++|++||. |..|.|+.++. ++++|||||+|.+.++|++||+++...|.++.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 345679999999999999999999999988 89999999987 89999999999999999999999889999999999
Q ss_pred eeccchHHH
Q psy16454 173 KKALSKEEM 181 (304)
Q Consensus 173 ~~~~~~~~~ 181 (304)
.++.+++..
T Consensus 87 ~~a~~~~~~ 95 (107)
T 2lmi_A 87 YEINNEDVD 95 (107)
T ss_dssp EECCHHHHH
T ss_pred EECCHHHHH
Confidence 999876643
No 171
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.9e-19 Score=131.95 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=77.9
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccC
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRA 84 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~ 84 (304)
+...++|||+|||+++|+++|+++|++||.|.+|.|+.++.++++++||||+|.+.++|++|+.++.+.|.++.|.|.++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 34568999999999999999999999999999999999999999999999999999999999977889999999999887
Q ss_pred CCccc
Q psy16454 85 VPRTE 89 (304)
Q Consensus 85 ~~~~~ 89 (304)
.++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 65543
No 172
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=8.2e-18 Score=122.60 Aligned_cols=84 Identities=20% Similarity=0.358 Sum_probs=77.4
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccccCC
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKRAV 85 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~~~ 85 (304)
++++|||+|||.++|+++|+++|++||+|.+|.++.++.++++++||||+|.+.++|++|++. +...+.++.|.+.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 468999999999999999999999999999999999998999999999999999999999965 6788999999999988
Q ss_pred Ccccc
Q psy16454 86 PRTEI 90 (304)
Q Consensus 86 ~~~~~ 90 (304)
++...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 76543
No 173
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=3e-18 Score=126.37 Aligned_cols=84 Identities=26% Similarity=0.570 Sum_probs=77.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeec
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKA 175 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~ 175 (304)
....++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|++.++|++|++ +...++++.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 3456899999999999999999999999999999999998 89999999999999999999999 888999999999999
Q ss_pred cchHHH
Q psy16454 176 LSKEEM 181 (304)
Q Consensus 176 ~~~~~~ 181 (304)
.++...
T Consensus 84 ~~~~~~ 89 (102)
T 2xs2_A 84 IRKQNL 89 (102)
T ss_dssp EECC--
T ss_pred CcCcch
Confidence 877654
No 174
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.5e-18 Score=121.67 Aligned_cols=81 Identities=21% Similarity=0.429 Sum_probs=73.6
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
+.+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.++++|++|++. +...+.++.+.+.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 46789999999999999999999999999999999999999999999999999999999999985 46778888887766
Q ss_pred CC
Q psy16454 84 AV 85 (304)
Q Consensus 84 ~~ 85 (304)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 175
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.3e-18 Score=121.61 Aligned_cols=84 Identities=11% Similarity=0.245 Sum_probs=77.1
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPK 82 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~ 82 (304)
..+...++|||+|||+++|+++|+++|++| .|.+|.|+.+ .++++++||||+|.++++|++|++++...+.++.|.|.
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEE
Confidence 345678999999999999999999999999 9999999999 78999999999999999999999977888999999999
Q ss_pred cCCCcc
Q psy16454 83 RAVPRT 88 (304)
Q Consensus 83 ~~~~~~ 88 (304)
++.++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 887653
No 176
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=4e-18 Score=130.31 Aligned_cols=81 Identities=20% Similarity=0.507 Sum_probs=76.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeeccc
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALS 177 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~~ 177 (304)
+.++|||.|||+++|+++|+++|++||.|.+|.|+.++.++++++||||+|.+.++|++||+++...|+++.|.|+++.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 45799999999999999999999999999999999999999999999999999999999996699999999999999875
Q ss_pred h
Q psy16454 178 K 178 (304)
Q Consensus 178 ~ 178 (304)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 177
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=1.9e-18 Score=119.95 Aligned_cols=75 Identities=32% Similarity=0.528 Sum_probs=70.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccC
Q psy16454 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRA 84 (304)
Q Consensus 10 ~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~ 84 (304)
+|||+|||+++|+++|+++|++||+|.+|.++.++.++++++||||+|+++++|++|++.+.+.+.++.+.++++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999999999999999999999999999999888999999887653
No 178
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9e-18 Score=122.41 Aligned_cols=80 Identities=19% Similarity=0.205 Sum_probs=73.4
Q ss_pred CCcceEEEcCCCCCCCHHHHH----HHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEE
Q psy16454 97 ATVKKLFVGSLRDDITEEDLK----EYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVD 171 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~----~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~ 171 (304)
...++|||+|||+++++++|+ ++|++||.|++|.|+.++.+ ++||||+|+++++|++||+. +...+++++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 455799999999999999999 99999999999999988766 78999999999999999985 99999999999
Q ss_pred EeeccchH
Q psy16454 172 VKKALSKE 179 (304)
Q Consensus 172 v~~~~~~~ 179 (304)
|+++.++.
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997653
No 179
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=124.60 Aligned_cols=84 Identities=23% Similarity=0.301 Sum_probs=76.3
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
......++|||+|||+++|+++|+++|++||+|++|.|+.++ ++++++||||+|++.++|++|++. +.+.+.++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 345678999999999999999999999999999999999987 589999999999999999999994 688899999999
Q ss_pred ccCCCc
Q psy16454 82 KRAVPR 87 (304)
Q Consensus 82 ~~~~~~ 87 (304)
.++...
T Consensus 89 ~~a~~~ 94 (114)
T 2do0_A 89 KMDERA 94 (114)
T ss_dssp EECSCC
T ss_pred EEcccC
Confidence 887644
No 180
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=7e-18 Score=131.57 Aligned_cols=88 Identities=26% Similarity=0.437 Sum_probs=80.2
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
.++...++|||+|||+++|+++|+++|++||+|++|+|+.++.++++++||||+|.+.++|++|++. +...+.++.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3556789999999999999999999999999999999999999999999999999999999999996 577899999999
Q ss_pred ccCCCcccc
Q psy16454 82 KRAVPRTEI 90 (304)
Q Consensus 82 ~~~~~~~~~ 90 (304)
.++.++...
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 998876543
No 181
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=3.5e-18 Score=125.61 Aligned_cols=84 Identities=17% Similarity=0.374 Sum_probs=74.1
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCC-CCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDP-QTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~ 82 (304)
.+...++|||+|||+++|+++|+++|++|| |.+|.|+.++ .++++++||||+|.+.++|++|++++...+.++.|.|.
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 456789999999999999999999999999 9999999998 68999999999999999999999777899999999999
Q ss_pred cCCCcc
Q psy16454 83 RAVPRT 88 (304)
Q Consensus 83 ~~~~~~ 88 (304)
++.++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 887653
No 182
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=2e-17 Score=119.44 Aligned_cols=85 Identities=15% Similarity=0.299 Sum_probs=76.6
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
....+.++|||+|||+++|+++|+++|++||+|.+|.|+.+ ++++++||||+|.+.++|++|++. +...+.++.|.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34578899999999999999999999999999999999984 788999999999999999999985 678899999999
Q ss_pred ccCCCccc
Q psy16454 82 KRAVPRTE 89 (304)
Q Consensus 82 ~~~~~~~~ 89 (304)
.++.+...
T Consensus 81 ~~a~~~~~ 88 (92)
T 2dgv_A 81 RIDRNASG 88 (92)
T ss_dssp EECSCCSS
T ss_pred EEcCCCCC
Confidence 98876543
No 183
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.74 E-value=1.1e-17 Score=133.14 Aligned_cols=84 Identities=20% Similarity=0.366 Sum_probs=78.0
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
.++.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|+++++|++||+. +.+.|.++.|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999996 57889999999999
Q ss_pred CCCcc
Q psy16454 84 AVPRT 88 (304)
Q Consensus 84 ~~~~~ 88 (304)
+.+..
T Consensus 116 a~~~~ 120 (156)
T 1h2v_Z 116 DAGFK 120 (156)
T ss_dssp ESCCC
T ss_pred CCCCC
Confidence 87643
No 184
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=6.7e-18 Score=126.27 Aligned_cols=85 Identities=13% Similarity=0.271 Sum_probs=77.8
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~~~ 82 (304)
...+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.+.++|++|++ ++...+.++.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999998 46888999999999
Q ss_pred cCCCcc
Q psy16454 83 RAVPRT 88 (304)
Q Consensus 83 ~~~~~~ 88 (304)
++.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 887544
No 185
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-18 Score=123.20 Aligned_cols=80 Identities=21% Similarity=0.400 Sum_probs=74.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeec
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
.+.++|||.|||+++++++|+++|++||.|..|.|+.++.++++++||||+|+++++|++|++. ++..+.++.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4567999999999999999999999999999999999999999999999999999999999985 888899999888765
Q ss_pred c
Q psy16454 176 L 176 (304)
Q Consensus 176 ~ 176 (304)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 186
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.8e-18 Score=127.78 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=73.0
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAV 85 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~ 85 (304)
.+.++|||+|||+++|+++|+++|++| .|.+|+|+.++. ++++|||||+|+++++|++||+++.+.|.++.|.|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 345789999999999999999999999 999999999875 899999999999999999999888889999999987776
Q ss_pred Cc
Q psy16454 86 PR 87 (304)
Q Consensus 86 ~~ 87 (304)
++
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 44
No 187
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-18 Score=132.85 Aligned_cols=86 Identities=17% Similarity=0.337 Sum_probs=77.9
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeE--EEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCc----cc
Q psy16454 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTS--VALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTH----LV 165 (304)
Q Consensus 93 ~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~--v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~----~~ 165 (304)
+......++|||+|||+++|+++|+++|++||.|.. |+|+.|+.+++++|||||+|++. +|++||+. +.. .+
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 344566789999999999999999999999999976 99999999999999999999999 99999976 887 99
Q ss_pred CCeeEEEeeccchH
Q psy16454 166 KGKKVDVKKALSKE 179 (304)
Q Consensus 166 ~g~~i~v~~~~~~~ 179 (304)
++++|.|+++.++.
T Consensus 96 ~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 96 DGKTINVEFAKGSK 109 (131)
T ss_dssp GGCCCCCEECCCSC
T ss_pred CCEEEEEEECCCCC
Confidence 99999999997653
No 188
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.2e-18 Score=126.63 Aligned_cols=88 Identities=24% Similarity=0.440 Sum_probs=79.5
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeec
Q psy16454 2 TKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVE 80 (304)
Q Consensus 2 ~~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~ 80 (304)
+..++..++|||+|||+++|+++|+++|++||+|.+|.++.++.++++++||||+|.+.++|++|++. +...+.++.|.
T Consensus 2 p~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp CCSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34456789999999999999999999999999999999999988999999999999999999999975 57889999999
Q ss_pred cccCCCccc
Q psy16454 81 PKRAVPRTE 89 (304)
Q Consensus 81 ~~~~~~~~~ 89 (304)
+.++.++..
T Consensus 82 v~~a~~~~~ 90 (104)
T 1p1t_A 82 VDNAASEKN 90 (104)
T ss_dssp EEETTCTTH
T ss_pred EEeCCCccc
Confidence 998876543
No 189
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=1.5e-18 Score=127.48 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=76.9
Q ss_pred CCccCeEEEcCCCC------CCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCC-
Q psy16454 5 PEHLRKLFIGGLDY------RTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDS- 76 (304)
Q Consensus 5 ~~~~~~v~V~nLp~------~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g- 76 (304)
+...++|||+|||+ ++++++|+++|++||+|.+|+|+.++.|++++|||||+|.++++|++|++. +...+.+
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 45678999999999 999999999999999999999999999999999999999999999999974 6888998
Q ss_pred eeeccccCCCcc
Q psy16454 77 KVVEPKRAVPRT 88 (304)
Q Consensus 77 ~~i~~~~~~~~~ 88 (304)
+.|.|.++.++.
T Consensus 83 r~l~V~~a~~~~ 94 (100)
T 3ns6_A 83 HRLFLYTMKDVE 94 (100)
T ss_dssp CBCEEEESHHHH
T ss_pred eEEEEEECchhh
Confidence 999998887654
No 190
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-18 Score=130.51 Aligned_cols=87 Identities=23% Similarity=0.325 Sum_probs=73.7
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
....+.++|||.|||+++|+++|+++|++||.|..|.+..+..++++++||||+|.+.++|++||+. +...+.+++|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3345668999999999999999999999999985443333333788999999999999999999976 899999999999
Q ss_pred eeccchHH
Q psy16454 173 KKALSKEE 180 (304)
Q Consensus 173 ~~~~~~~~ 180 (304)
+++.++..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpx_A 100 EFGKNKKQ 107 (115)
T ss_dssp EECCCCSC
T ss_pred EEccCCCC
Confidence 99987654
No 191
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=122.44 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=70.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh---CCcccCCeeEE
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK---GTHLVKGKKVD 171 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~---~~~~~~g~~i~ 171 (304)
...+.++|||+|||+++++++|+++|++||.|++|.|+++ |+||||+|++.++|++|++. +...+.+++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3446689999999999999999999999999999998754 68999999999999999974 56789999999
Q ss_pred EeeccchHH
Q psy16454 172 VKKALSKEE 180 (304)
Q Consensus 172 v~~~~~~~~ 180 (304)
|.++.++..
T Consensus 85 V~~a~~~~~ 93 (101)
T 2cq1_A 85 IQYSNHKEL 93 (101)
T ss_dssp EEECSCSSC
T ss_pred EEEcCcccC
Confidence 999986643
No 192
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=124.90 Aligned_cols=84 Identities=25% Similarity=0.336 Sum_probs=76.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCc-eeEEEEe-eeCCCCCccceEEEEeCChhHHHHHHHh-C--CcccCCeeEEE
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGE-VTSVALV-TEKETGKKRGFGFVEYNDYDPVDKACLK-G--THLVKGKKVDV 172 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~-v~~v~i~-~~~~~~~~~G~afV~f~~~~~a~~A~~~-~--~~~~~g~~i~v 172 (304)
+.++|||+|||+++++++|+++|++||. |..|.|+ .++.++++++||||+|.++++|++|++. + ...+++++|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4579999999999999999999999998 9999998 7888889999999999999999999986 4 48899999999
Q ss_pred eeccchHHH
Q psy16454 173 KKALSKEEM 181 (304)
Q Consensus 173 ~~~~~~~~~ 181 (304)
+++.++.+.
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999877653
No 193
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=2.5e-18 Score=133.07 Aligned_cols=84 Identities=14% Similarity=0.144 Sum_probs=76.0
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCc---eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeee
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGD---VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVV 79 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~---v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i 79 (304)
.++.+.++|||+|||+++|+++|+++|++||. |.+|+|+.++. ++++|||||+|+++++|++||+++.+.+.++.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEE
Confidence 34567899999999999999999999999999 89999999977 999999999999999999999977888999999
Q ss_pred ccccCCCc
Q psy16454 80 EPKRAVPR 87 (304)
Q Consensus 80 ~~~~~~~~ 87 (304)
.|.++.++
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 88876543
No 194
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=8.8e-18 Score=128.74 Aligned_cols=86 Identities=14% Similarity=0.286 Sum_probs=78.4
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~~~ 82 (304)
...+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.++++|++|++ ++...|.++.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999997 47889999999999
Q ss_pred cCCCccc
Q psy16454 83 RAVPRTE 89 (304)
Q Consensus 83 ~~~~~~~ 89 (304)
++.++..
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 8875543
No 195
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=124.54 Aligned_cols=86 Identities=23% Similarity=0.368 Sum_probs=78.0
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCc-eeEEEEE-eCCCCCCcccEEEEEeCCHHHHHHHHHhC---CCCcCCeee
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGD-VVDVVVM-KDPQTKKSRGFGFITYSSAHMVDDAQAAR---PHTIDSKVV 79 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~-v~~v~i~-~~~~~~~~kG~aFV~f~~~e~a~~al~~~---~~~~~g~~i 79 (304)
+.+.++|||+|||+++|+++|+++|++||+ |.+|.++ .++.++++++||||+|.++++|++|++.+ ...+.++.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 456789999999999999999999999998 9999998 78888899999999999999999999975 378999999
Q ss_pred ccccCCCcccc
Q psy16454 80 EPKRAVPRTEI 90 (304)
Q Consensus 80 ~~~~~~~~~~~ 90 (304)
.|.++.++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99998876553
No 196
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=124.11 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=70.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCC-----ee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKG-----KK 169 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g-----~~ 169 (304)
.....+|||.|||+++++++|+++|++||.|+.|.|+.+ +||||+|++.++|++||+. +...|.+ ++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345689999999999999999999999999999999875 7999999999999999985 8888999 99
Q ss_pred EEEeeccchH
Q psy16454 170 VDVKKALSKE 179 (304)
Q Consensus 170 i~v~~~~~~~ 179 (304)
|+|+++.++.
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999998753
No 197
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=121.34 Aligned_cols=79 Identities=22% Similarity=0.286 Sum_probs=68.8
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CC--cccCCeeE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GT--HLVKGKKV 170 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~--~~~~g~~i 170 (304)
....++++|||+|||+++|+++|+++|++||.|++|.+++ .|+||||+|++.++|++|++. +. ..+.+++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 3445678999999999999999999999999999999974 468999999999999999976 33 35899999
Q ss_pred EEeeccch
Q psy16454 171 DVKKALSK 178 (304)
Q Consensus 171 ~v~~~~~~ 178 (304)
.|+++.++
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99999765
No 198
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=3e-18 Score=129.82 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=75.9
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCc---eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeec
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGD---VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVE 80 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~---v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~ 80 (304)
++.+.++|||+|||+++|+++|+++|++|+. |.+|+|+.++. ++++|||||+|+++++|++||+++.+.|.++.|.
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~ 91 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIE 91 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEE
Confidence 4567889999999999999999999999999 89999999976 9999999999999999999999888899999999
Q ss_pred cccCCCc
Q psy16454 81 PKRAVPR 87 (304)
Q Consensus 81 ~~~~~~~ 87 (304)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 8876543
No 199
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=2.3e-18 Score=126.97 Aligned_cols=86 Identities=22% Similarity=0.446 Sum_probs=78.3
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeecc
Q psy16454 2 TKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEP 81 (304)
Q Consensus 2 ~~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~ 81 (304)
+..+...++|||+|||+++|+++|+++|++||.|.+|.|+.++ ++++++||||+|++.++|++|++ +.+.++++.+.+
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v 80 (102)
T 2xs2_A 3 PEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKL 80 (102)
T ss_dssp CCCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEE
Confidence 4566788999999999999999999999999999999999998 89999999999999999999999 888899999998
Q ss_pred ccCCCccc
Q psy16454 82 KRAVPRTE 89 (304)
Q Consensus 82 ~~~~~~~~ 89 (304)
.++.++..
T Consensus 81 ~~a~~~~~ 88 (102)
T 2xs2_A 81 GPAIRKQN 88 (102)
T ss_dssp EEEEECC-
T ss_pred EECCcCcc
Confidence 88775543
No 200
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.73 E-value=1.5e-17 Score=123.70 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=74.9
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
..++.++|||+|||+++|+++|+++|++||+|.+|.|+.++ ++++++||||+|.++++|++|++. +...+.++.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 45678999999999999999999999999999999999998 899999999999999999999995 7888999999887
Q ss_pred cCC
Q psy16454 83 RAV 85 (304)
Q Consensus 83 ~~~ 85 (304)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
No 201
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.4e-17 Score=116.99 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=68.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeecc
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKAL 176 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~ 176 (304)
.+..|+|+||++.+||++|+++|.+||+|+++.+.. +||||||+|.++++|++|++. |+..+.+++|+|+.|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356899999999999999999999999999999864 689999999999999999977 9999999999999994
No 202
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.73 E-value=1.9e-17 Score=122.27 Aligned_cols=77 Identities=29% Similarity=0.488 Sum_probs=70.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
..+.++|||.|||+++|+++|+++|++||.|+.|.|+ ++||||+|+++++|++||+. +...|++++|.|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456899999999999999999999999999999986 34999999999999999985 99999999999999
Q ss_pred ccchHH
Q psy16454 175 ALSKEE 180 (304)
Q Consensus 175 ~~~~~~ 180 (304)
+.++..
T Consensus 80 a~~~~~ 85 (103)
T 2dgu_A 80 AKPPDQ 85 (103)
T ss_dssp CCCCCC
T ss_pred cCCCcc
Confidence 987654
No 203
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=125.65 Aligned_cols=79 Identities=20% Similarity=0.321 Sum_probs=70.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-C--CcccCCeeEEE
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-G--THLVKGKKVDV 172 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~--~~~~~g~~i~v 172 (304)
..+.++|||+|||+++|+++|+++|++||.|++|.|+.+ |+||||+|++.++|++|++. + ...|.+++|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345689999999999999999999999999999999864 68999999999999999975 3 46899999999
Q ss_pred eeccchHH
Q psy16454 173 KKALSKEE 180 (304)
Q Consensus 173 ~~~~~~~~ 180 (304)
+++.+++.
T Consensus 102 ~~a~~k~~ 109 (119)
T 2ad9_A 102 QFSNHKEL 109 (119)
T ss_dssp EECSSSSC
T ss_pred EEccCCCC
Confidence 99977654
No 204
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=7.6e-18 Score=123.59 Aligned_cols=79 Identities=16% Similarity=0.202 Sum_probs=69.7
Q ss_pred CCcceEEEcCCCC-CCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-C--CcccCCeeEEE
Q psy16454 97 ATVKKLFVGSLRD-DITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-G--THLVKGKKVDV 172 (304)
Q Consensus 97 ~~~~~l~v~~l~~-~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~--~~~~~g~~i~v 172 (304)
.+.++|||+|||+ ++|+++|+++|++||.|++|.|+++ ++||||+|+++++|++||+. + ...|.+++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3568999999999 9999999999999999999999864 37999999999999999975 3 45699999999
Q ss_pred eeccchHHH
Q psy16454 173 KKALSKEEM 181 (304)
Q Consensus 173 ~~~~~~~~~ 181 (304)
.++....+.
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x4d_A 87 HLSQKYKRI 95 (102)
T ss_dssp EEECCCTTS
T ss_pred EECCCCCCC
Confidence 999876543
No 205
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=9e-18 Score=127.16 Aligned_cols=81 Identities=26% Similarity=0.349 Sum_probs=74.8
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
++.+.++|||+|||+++|+++|+++|++||+|.+|+|+.++.++++++||||+|.+.++|++|++. +...+.++.|.|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 456779999999999999999999999999999999999988999999999999999999999986 5788999999887
Q ss_pred cC
Q psy16454 83 RA 84 (304)
Q Consensus 83 ~~ 84 (304)
++
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 65
No 206
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=123.04 Aligned_cols=83 Identities=37% Similarity=0.539 Sum_probs=74.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
...+.++|||.|||+++++++|+++|++| ..|.++.++.++++++||||+|+++++|++||+. +...|.++.|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34566899999999999999999999977 4778888888999999999999999999999985 9999999999999
Q ss_pred eccchHH
Q psy16454 174 KALSKEE 180 (304)
Q Consensus 174 ~~~~~~~ 180 (304)
++.++.+
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9977643
No 207
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=120.73 Aligned_cols=82 Identities=10% Similarity=0.107 Sum_probs=72.2
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh---CCCCcCCeeec
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA---RPHTIDSKVVE 80 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~---~~~~~~g~~i~ 80 (304)
...++++|||+|||+++|+++|+++|++||.|.+|.|+++ |+||||+|++.++|++|++. ....+.++.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3467899999999999999999999999999999998864 68999999999999999985 35679999999
Q ss_pred cccCCCccccC
Q psy16454 81 PKRAVPRTEIN 91 (304)
Q Consensus 81 ~~~~~~~~~~~ 91 (304)
|.++.++....
T Consensus 85 V~~a~~~~~~~ 95 (101)
T 2cq1_A 85 IQYSNHKELKT 95 (101)
T ss_dssp EEECSCSSCCC
T ss_pred EEEcCcccCcC
Confidence 99988765443
No 208
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=125.44 Aligned_cols=82 Identities=11% Similarity=0.113 Sum_probs=72.8
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC---CCCcCCeeec
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR---PHTIDSKVVE 80 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~---~~~~~g~~i~ 80 (304)
..+++++|||+|||+++|+++|+++|++||.|++|+|+++ |+||||+|++.++|++|++.+ ...+.++.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4567899999999999999999999999999999999875 689999999999999999864 4679999999
Q ss_pred cccCCCccccC
Q psy16454 81 PKRAVPRTEIN 91 (304)
Q Consensus 81 ~~~~~~~~~~~ 91 (304)
|.++.++....
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99988766543
No 209
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-18 Score=128.06 Aligned_cols=83 Identities=23% Similarity=0.388 Sum_probs=75.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeec
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKA 175 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~ 175 (304)
..+.++|||+|||+++|+++|+++|++||.|.. .++.+..++++++||||+|++.++|++||+++...+.+++|.|+++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 345689999999999999999999999999888 6677777889999999999999999999998889999999999999
Q ss_pred cchH
Q psy16454 176 LSKE 179 (304)
Q Consensus 176 ~~~~ 179 (304)
.++.
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7653
No 210
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.72 E-value=2.8e-18 Score=133.20 Aligned_cols=83 Identities=12% Similarity=0.191 Sum_probs=73.3
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeecccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKR 83 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~ 83 (304)
.+...++|||+|||+++|+++|+++|++|+ |++|+|+.++. ++++|||||+|+++++|++||+++.+.|.++.|.|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEE
Confidence 456778999999999999999999999999 67999999976 9999999999999999999997778899999999887
Q ss_pred CCCcc
Q psy16454 84 AVPRT 88 (304)
Q Consensus 84 ~~~~~ 88 (304)
+.+..
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 76544
No 211
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=118.80 Aligned_cols=77 Identities=25% Similarity=0.536 Sum_probs=70.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
..+.++|||.|||+++++++|+++|++||.|+.|.|+ ++||||+|+++++|++|++. +...+++++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3466899999999999999999999999999999987 57999999999999999965 88999999999999
Q ss_pred ccchHH
Q psy16454 175 ALSKEE 180 (304)
Q Consensus 175 ~~~~~~ 180 (304)
+.++..
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 977643
No 212
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=8.3e-18 Score=125.98 Aligned_cols=83 Identities=19% Similarity=0.353 Sum_probs=75.5
Q ss_pred CCcceEEEcCCCCCCCHHHHH---HHHhcCCceeEEEEeeeCCCC---CccceEEEEeCChhHHHHHHHh-CCcccCCee
Q psy16454 97 ATVKKLFVGSLRDDITEEDLK---EYFGQFGEVTSVALVTEKETG---KKRGFGFVEYNDYDPVDKACLK-GTHLVKGKK 169 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~---~~F~~~G~v~~v~i~~~~~~~---~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~ 169 (304)
.+.++|||.|||+++++++|+ ++|++||+|.+|.|+.++.++ +++|||||+|+++++|++||+. +...|++++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 345799999999999999999 999999999999999887654 5669999999999999999986 999999999
Q ss_pred EEEeeccchH
Q psy16454 170 VDVKKALSKE 179 (304)
Q Consensus 170 i~v~~~~~~~ 179 (304)
|+|+++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998774
No 213
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=5.7e-18 Score=123.14 Aligned_cols=81 Identities=12% Similarity=0.161 Sum_probs=73.3
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
+...++|||+|||+++|+++|+++|++||+|.++.++.++.++++++||||+|.++++|++|++. +.+.+.++.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999999999999989999999999999999999999985 78889999999887
Q ss_pred CC
Q psy16454 84 AV 85 (304)
Q Consensus 84 ~~ 85 (304)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 214
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.2e-17 Score=123.34 Aligned_cols=83 Identities=17% Similarity=0.349 Sum_probs=74.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCccc--------
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLV-------- 165 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~-------- 165 (304)
...+.++|||.|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+. +...+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34456899999999999999999999999999999999998 899999999999999999999985 88877
Q ss_pred CCeeEEEeeccch
Q psy16454 166 KGKKVDVKKALSK 178 (304)
Q Consensus 166 ~g~~i~v~~~~~~ 178 (304)
.+++|.|+++.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 6788999988643
No 215
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=124.15 Aligned_cols=85 Identities=29% Similarity=0.588 Sum_probs=76.1
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeE
Q psy16454 92 RPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKV 170 (304)
Q Consensus 92 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i 170 (304)
........++|||+|||+++++++|+++|++||.|+.|.|+.++. ++++||||+|++.++|++|++. ++..+++++|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 344455678999999999999999999999999999999998853 5899999999999999999985 9999999999
Q ss_pred EEeeccch
Q psy16454 171 DVKKALSK 178 (304)
Q Consensus 171 ~v~~~~~~ 178 (304)
.|+++.++
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99998764
No 216
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.8e-17 Score=121.91 Aligned_cols=83 Identities=12% Similarity=0.239 Sum_probs=73.6
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
++.+.++|||+|||+++|+++|+++|++||+|++|.|+.+ ..+++||||+|+++++|++|++. +...+.++.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4567899999999999999999999999999999999654 45899999999999999999954 6788999999999
Q ss_pred cCCCccc
Q psy16454 83 RAVPRTE 89 (304)
Q Consensus 83 ~~~~~~~ 89 (304)
++.++..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9887554
No 217
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=4.3e-18 Score=126.71 Aligned_cols=84 Identities=17% Similarity=0.163 Sum_probs=76.7
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCc---eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeee
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGD---VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVV 79 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~---v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i 79 (304)
.++...++|||+|||+++|+++|+++|++||. |.+|+|+.++. ++++|||||+|.+.++|++||+++.+.+.++.|
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 84 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEE
Confidence 45678899999999999999999999999998 89999999977 999999999999999999999987888999999
Q ss_pred ccccCCCc
Q psy16454 80 EPKRAVPR 87 (304)
Q Consensus 80 ~~~~~~~~ 87 (304)
.|.++.++
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 98887654
No 218
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-17 Score=120.84 Aligned_cols=80 Identities=19% Similarity=0.261 Sum_probs=70.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh---CCcccCCeeEE
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK---GTHLVKGKKVD 171 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~---~~~~~~g~~i~ 171 (304)
...+.++|||.|||+++++++|+++|++||.|++|.|+++ |+||||+|++.++|++|++. +...+.+++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3446689999999999999999999999999999998753 68999999999999999974 44569999999
Q ss_pred EeeccchHH
Q psy16454 172 VKKALSKEE 180 (304)
Q Consensus 172 v~~~~~~~~ 180 (304)
|+++..+..
T Consensus 85 V~~a~~~~~ 93 (104)
T 1wex_A 85 FNYSTSKRI 93 (104)
T ss_dssp EEECSSSSC
T ss_pred EEEccCccc
Confidence 999976543
No 219
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5e-18 Score=129.07 Aligned_cols=80 Identities=13% Similarity=0.264 Sum_probs=72.3
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCce----eEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeecc
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDV----VDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEP 81 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v----~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~ 81 (304)
.+.++|||+|||+++|+++|+++|++|++| .+|+|+.+ .+++++|||||+|+++++|++||+.+.+.+.++.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 567899999999999999999999999975 68999998 5899999999999999999999998888899998888
Q ss_pred ccCCC
Q psy16454 82 KRAVP 86 (304)
Q Consensus 82 ~~~~~ 86 (304)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 76653
No 220
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=131.94 Aligned_cols=81 Identities=16% Similarity=0.333 Sum_probs=75.0
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCC--ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWG--DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
..++|||+|||+++|+++|+++|++|| .|.+|+|+.++.+++++|||||+|.+.++|++||+. +...|.++.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999998 57889999999998
Q ss_pred CCCc
Q psy16454 84 AVPR 87 (304)
Q Consensus 84 ~~~~ 87 (304)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8754
No 221
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.3e-17 Score=119.83 Aligned_cols=81 Identities=11% Similarity=0.136 Sum_probs=71.0
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC---CCCcCCeeec
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR---PHTIDSKVVE 80 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~---~~~~~g~~i~ 80 (304)
...++++|||+|||+++|+++|+++|++||.|.+|.|+++ |+||||+|+++++|++|++.+ ...+.++.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3457899999999999999999999999999999998863 689999999999999999853 4568999999
Q ss_pred cccCCCcccc
Q psy16454 81 PKRAVPRTEI 90 (304)
Q Consensus 81 ~~~~~~~~~~ 90 (304)
+.++..+...
T Consensus 85 V~~a~~~~~~ 94 (104)
T 1wex_A 85 FNYSTSKRIT 94 (104)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCcccc
Confidence 9998876543
No 222
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=8.1e-18 Score=123.07 Aligned_cols=83 Identities=12% Similarity=0.125 Sum_probs=75.5
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~ 83 (304)
+...++|||+|||+++|+++|+++|++||+|.++.++.++.++++++||||+|.++++|++|++.+ ...+.++.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 456789999999999999999999999999999999998899999999999999999999999765 6889999999988
Q ss_pred CCCc
Q psy16454 84 AVPR 87 (304)
Q Consensus 84 ~~~~ 87 (304)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 7643
No 223
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=119.11 Aligned_cols=82 Identities=13% Similarity=0.305 Sum_probs=74.6
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCC-cccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKK-SRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~-~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
...++|||+|||+++|+++|+++|++||+|.+|.++.++.+.. +++||||+|.++++|++|++. +...+.++.|.+.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999999877665 899999999999999999995 78899999999988
Q ss_pred CCCc
Q psy16454 84 AVPR 87 (304)
Q Consensus 84 ~~~~ 87 (304)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 7654
No 224
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=1.4e-17 Score=124.19 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=69.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeec
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFG-EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
...+|||+|||+++++++|+++|++|| .|..+.|+.+ +++|||||+|++.++|++||+. ++..|++++|+|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 347999999999999999999999999 8999988643 4789999999999999999975 999999999999999
Q ss_pred cchHH
Q psy16454 176 LSKEE 180 (304)
Q Consensus 176 ~~~~~ 180 (304)
..++.
T Consensus 103 ~~~p~ 107 (111)
T 2jvr_A 103 DNPPP 107 (111)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 76643
No 225
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=121.93 Aligned_cols=81 Identities=20% Similarity=0.392 Sum_probs=71.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
...+.++|||.|||+++++++|+++|++|+.| .|+.+ .++++++||||+|+++++|++||+. +...|.+++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34567899999999999999999999999977 55555 6788999999999999999999985 8899999999999
Q ss_pred eccchH
Q psy16454 174 KALSKE 179 (304)
Q Consensus 174 ~~~~~~ 179 (304)
++.++.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 997763
No 226
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.71 E-value=1.1e-17 Score=129.68 Aligned_cols=87 Identities=32% Similarity=0.488 Sum_probs=79.4
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
.++.+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.+.++|++|++. +...+.++.|.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4556788999999999999999999999999999999999988999999999999999999999986 578899999999
Q ss_pred ccCCCccc
Q psy16454 82 KRAVPRTE 89 (304)
Q Consensus 82 ~~~~~~~~ 89 (304)
.++.+...
T Consensus 122 ~~a~~~~~ 129 (135)
T 2lea_A 122 QMARYGRP 129 (135)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99876543
No 227
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=4.6e-18 Score=122.37 Aligned_cols=81 Identities=37% Similarity=0.620 Sum_probs=72.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccch
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALSK 178 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~ 178 (304)
++|||+|||+++++++|+++|++||.|.+|.|+.++.++++++||||+|.+.+ |++|++. ++..+++++|.|+++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 9999987 889999999999999876
Q ss_pred HHH
Q psy16454 179 EEM 181 (304)
Q Consensus 179 ~~~ 181 (304)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 228
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3e-17 Score=119.62 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=74.3
Q ss_pred CCCccCeEEEcCCCCCCCHHHHH----HHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCee
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLK----SHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKV 78 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~----~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~ 78 (304)
...+.++|||+|||+++|+++|+ ++|++||+|.+|+|+.++.+ ++||||+|+++++|++|++. +...+.++.
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34567899999999999999999 99999999999999998766 78999999999999999994 678899999
Q ss_pred eccccCCCccc
Q psy16454 79 VEPKRAVPRTE 89 (304)
Q Consensus 79 i~~~~~~~~~~ 89 (304)
|.|.++.+...
T Consensus 82 l~V~~a~~~~~ 92 (96)
T 2dgx_A 82 ILVSLATGASG 92 (96)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEEcCCCCC
Confidence 99999876543
No 229
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=119.79 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=69.4
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC---CCCcCCeeec
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR---PHTIDSKVVE 80 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~---~~~~~g~~i~ 80 (304)
...++++|||+|||+++|+++|+++|++||.|.+|++++ +|++|||+|++.++|++|++.+ ...+.++.|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 346789999999999999999999999999999999985 4689999999999999999874 2347899999
Q ss_pred cccCCCcc
Q psy16454 81 PKRAVPRT 88 (304)
Q Consensus 81 ~~~~~~~~ 88 (304)
|.++.+++
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99887654
No 230
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=9.1e-18 Score=129.60 Aligned_cols=86 Identities=21% Similarity=0.297 Sum_probs=76.7
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeE--EEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CC----CcC
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVD--VVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PH----TID 75 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~--v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~----~~~ 75 (304)
......++|||+|||+++|+++|+++|++||.|.. |+|+.++.++++||||||+|++. +|++|++.+ .. .++
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34567889999999999999999999999999976 99999999999999999999999 999998775 55 899
Q ss_pred CeeeccccCCCccc
Q psy16454 76 SKVVEPKRAVPRTE 89 (304)
Q Consensus 76 g~~i~~~~~~~~~~ 89 (304)
++.|.|.++.++..
T Consensus 97 gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 97 GKTINVEFAKGSKR 110 (131)
T ss_dssp GCCCCCEECCCSCC
T ss_pred CEEEEEEECCCCCC
Confidence 99999998876543
No 231
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=126.93 Aligned_cols=82 Identities=28% Similarity=0.487 Sum_probs=75.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
....+.++|||.|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+. +...|.+++|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3445678999999999999999999999999999999999999999999999999999999999975 889999999999
Q ss_pred eec
Q psy16454 173 KKA 175 (304)
Q Consensus 173 ~~~ 175 (304)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 232
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-18 Score=130.77 Aligned_cols=83 Identities=13% Similarity=0.244 Sum_probs=75.0
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccC
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRA 84 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~ 84 (304)
+...++|||+|||+++|+++|+++|++||.|.++.++.+..++++++||||+|+++++|++||+++.+.|.++.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 45678999999999999999999999999999877777778999999999999999999999997788999999998877
Q ss_pred CCc
Q psy16454 85 VPR 87 (304)
Q Consensus 85 ~~~ 87 (304)
.++
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
No 233
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=2.2e-17 Score=126.10 Aligned_cols=81 Identities=19% Similarity=0.477 Sum_probs=75.9
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCCC
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAVP 86 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~~ 86 (304)
+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.+.++|++|++++.+.+.++.|.|.++.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 46899999999999999999999999999999999998899999999999999999999997678899999999998775
Q ss_pred c
Q psy16454 87 R 87 (304)
Q Consensus 87 ~ 87 (304)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 234
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=4.4e-17 Score=124.61 Aligned_cols=84 Identities=6% Similarity=0.187 Sum_probs=73.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeE
Q psy16454 96 GATVKKLFVGSLRDDITEEDLK----EYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKV 170 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~----~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i 170 (304)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|++||+. ++..|.+++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456799999999999999876 6999999999988753 568899999999999999999976 9999999999
Q ss_pred EEeeccchHHHh
Q psy16454 171 DVKKALSKEEMA 182 (304)
Q Consensus 171 ~v~~~~~~~~~~ 182 (304)
.|+++.++....
T Consensus 103 ~V~~a~~~~~~~ 114 (127)
T 2a3j_A 103 VITFSETPQSQV 114 (127)
T ss_dssp EEEECCCCCHHH
T ss_pred EEEEccCcchhc
Confidence 999998776543
No 235
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=5.1e-17 Score=124.14 Aligned_cols=85 Identities=16% Similarity=0.247 Sum_probs=77.5
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~~~ 82 (304)
.++..++|||+|||+++|+++|+++|++||+|.+|.|+.++ ++++++||||+|.+.++|++|++ .+...+.++.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34677899999999999999999999999999999999998 89999999999999999999999 56788999999999
Q ss_pred cCCCccc
Q psy16454 83 RAVPRTE 89 (304)
Q Consensus 83 ~~~~~~~ 89 (304)
++.+...
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 8876544
No 236
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=2.8e-17 Score=121.83 Aligned_cols=82 Identities=17% Similarity=0.234 Sum_probs=73.6
Q ss_pred CCCcceEEEcCCCCCC------CHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCe
Q psy16454 96 GATVKKLFVGSLRDDI------TEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGK 168 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~------~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~ 168 (304)
....++|||+|||+.+ ++++|+++|++||.|..|.|+ +.+++++|||||+|.++++|++||+. ++..+.++
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3446799999999999 789999999999999999988 46789999999999999999999986 99999998
Q ss_pred -eEEEeeccchH
Q psy16454 169 -KVDVKKALSKE 179 (304)
Q Consensus 169 -~i~v~~~~~~~ 179 (304)
+|.|+++...+
T Consensus 90 ~~l~V~~a~~~~ 101 (105)
T 2nlw_A 90 HTFRVNLFTDFD 101 (105)
T ss_dssp CEEEEECSCCCC
T ss_pred ceEEEEEcchHh
Confidence 99999986543
No 237
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=8.3e-19 Score=132.53 Aligned_cols=85 Identities=26% Similarity=0.429 Sum_probs=78.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeE--------EEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccC
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTS--------VALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVK 166 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~--------v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~ 166 (304)
..+.++|||+|||+++++++|+++|++||.|.. |.|+.++.++++++||||+|.+.++|++||+. +...+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345679999999999999999999999999998 89999988999999999999999999999985 889999
Q ss_pred CeeEEEeeccchHH
Q psy16454 167 GKKVDVKKALSKEE 180 (304)
Q Consensus 167 g~~i~v~~~~~~~~ 180 (304)
+++|.|+++.++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987754
No 238
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=4e-17 Score=114.68 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=65.5
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeeccccC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVEPKRA 84 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~~~~~ 84 (304)
-.+..|||+||++++||++|+++|.+||+|.+++++. +||||||+|.++++|++|++.+ ...+.++.|.++.+
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3578899999999999999999999999999999965 6899999999999999999885 67788888887665
No 239
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.5e-17 Score=117.23 Aligned_cols=77 Identities=23% Similarity=0.424 Sum_probs=69.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
...+.++|||.|||+++++++|+++|++||.|..|.|++ +||||+|+++++|++|++. +...+.+++|+|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345668999999999999999999999999999999974 3999999999999999975 9999999999999
Q ss_pred eccchH
Q psy16454 174 KALSKE 179 (304)
Q Consensus 174 ~~~~~~ 179 (304)
++.++.
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 997664
No 240
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=4.4e-18 Score=125.26 Aligned_cols=84 Identities=21% Similarity=0.280 Sum_probs=75.4
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccC
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRA 84 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~ 84 (304)
+...++|||+|||+++|+++|+++|++||+|.. .++.++.++++++||||+|++.++|++|++++...+.++.|.|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 446889999999999999999999999999888 6666767889999999999999999999997788999999999998
Q ss_pred CCccc
Q psy16454 85 VPRTE 89 (304)
Q Consensus 85 ~~~~~ 89 (304)
.++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76543
No 241
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6.5e-17 Score=118.03 Aligned_cols=76 Identities=24% Similarity=0.475 Sum_probs=69.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccC--CeeEEEe
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVK--GKKVDVK 173 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~--g~~i~v~ 173 (304)
.+.++|||.|||+++++++|+++|++||.|++|.+..+ ++||||+|++.++|++|++. +...+. +++|.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45579999999999999999999999999999998753 67999999999999999985 889999 9999999
Q ss_pred eccch
Q psy16454 174 KALSK 178 (304)
Q Consensus 174 ~~~~~ 178 (304)
++.++
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99765
No 242
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-17 Score=121.00 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=70.8
Q ss_pred CCCccCeEEEcCCCC-CCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC---CCCcCCeee
Q psy16454 4 EPEHLRKLFIGGLDY-RTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR---PHTIDSKVV 79 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~---~~~~~g~~i 79 (304)
..+++++|||+|||+ ++|+++|+++|++||.|.+|.|+++ ++||||+|+++++|++|++.+ ...+.++.|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 346789999999999 9999999999999999999999875 479999999999999999864 356899999
Q ss_pred ccccCCCcccc
Q psy16454 80 EPKRAVPRTEI 90 (304)
Q Consensus 80 ~~~~~~~~~~~ 90 (304)
.|.++......
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 1x4d_A 85 RVHLSQKYKRI 95 (102)
T ss_dssp EEEEECCCTTS
T ss_pred EEEECCCCCCC
Confidence 99998865443
No 243
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.70 E-value=5.7e-17 Score=121.17 Aligned_cols=76 Identities=21% Similarity=0.533 Sum_probs=68.7
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 96 GATVKKLFVGSLRDD-ITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~-~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
....++|||.|||++ +++++|+++|++||.|+.|.| +++||||+|++.++|++||+. +...+++++|+|+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344579999999999 999999999999999999998 468999999999999999965 9999999999999
Q ss_pred eccchH
Q psy16454 174 KALSKE 179 (304)
Q Consensus 174 ~~~~~~ 179 (304)
++.++.
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997543
No 244
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.6e-17 Score=117.56 Aligned_cols=78 Identities=23% Similarity=0.405 Sum_probs=69.7
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcC--CceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQF--GEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKV 170 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~--G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i 170 (304)
....+.++|||.|||+++++++|+++|++| +.|..|.+. ++||||+|.+.++|++||+. +...|.+++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567899999999999999999999999 899998874 46999999999999999984 9999999999
Q ss_pred EEeeccchH
Q psy16454 171 DVKKALSKE 179 (304)
Q Consensus 171 ~v~~~~~~~ 179 (304)
.|+++.++.
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpd_A 82 EVTLAKPVD 90 (99)
T ss_dssp EEECCCCCC
T ss_pred EEEECCCCC
Confidence 999997654
No 245
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.5e-17 Score=121.53 Aligned_cols=79 Identities=16% Similarity=0.438 Sum_probs=71.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeec
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
...++|||.|||+++++++|+++|++||.|..|.|+.+ ++||||+|++.++|++||+. +...|.+++|+|+++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45679999999999999999999999999999999865 68999999999999999965 999999999999999
Q ss_pred cchHHH
Q psy16454 176 LSKEEM 181 (304)
Q Consensus 176 ~~~~~~ 181 (304)
.++...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 877543
No 246
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.1e-17 Score=121.27 Aligned_cols=83 Identities=22% Similarity=0.521 Sum_probs=75.0
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
..+...++|||+|||.++|+++|+++|++||+|.+|.++.++. .+++||||+|.+.++|++|++. +...+.++.|.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4556789999999999999999999999999999999998753 4899999999999999999995 688899999999
Q ss_pred ccCCCc
Q psy16454 82 KRAVPR 87 (304)
Q Consensus 82 ~~~~~~ 87 (304)
.++.++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 988764
No 247
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=6.8e-17 Score=117.92 Aligned_cols=79 Identities=22% Similarity=0.287 Sum_probs=70.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
....++|||.|||+++++++|+++|++||.|. +.++.+ ++++||||+|.+.++|++||+. +...+++++|.|++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44567999999999999999999999999997 666654 5789999999999999999966 99999999999999
Q ss_pred ccchH
Q psy16454 175 ALSKE 179 (304)
Q Consensus 175 ~~~~~ 179 (304)
+.++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97653
No 248
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.3e-17 Score=120.78 Aligned_cols=71 Identities=20% Similarity=0.418 Sum_probs=64.7
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcC
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTID 75 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~ 75 (304)
.+.+.++|||+|||+++|+++|+++|++||+|.+|.|+.++ ++++++||||+|.+.++|++|++. +...+.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 92 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIK 92 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 44678999999999999999999999999999999999998 899999999999999999999985 455664
No 249
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-16 Score=113.99 Aligned_cols=80 Identities=19% Similarity=0.424 Sum_probs=71.8
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
..+.+.++|||+|||+++|+++|+++|++||+|.+|.++ ++||||+|.++++|++|++. +...+.++.|.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 74 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 74 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEE
Confidence 356788999999999999999999999999999999998 47999999999999999965 577899999999
Q ss_pred ccCCCcccc
Q psy16454 82 KRAVPRTEI 90 (304)
Q Consensus 82 ~~~~~~~~~ 90 (304)
.++.++...
T Consensus 75 ~~a~~~~~~ 83 (90)
T 2dnq_A 75 EASKNKSKA 83 (90)
T ss_dssp ECSSCCCCC
T ss_pred EECCCCCCC
Confidence 998876543
No 250
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.5e-17 Score=121.23 Aligned_cols=79 Identities=10% Similarity=0.183 Sum_probs=69.6
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh---CCcccCCeeEE
Q psy16454 96 GATVKKLFVGSLRDD-ITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK---GTHLVKGKKVD 171 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~-~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~---~~~~~~g~~i~ 171 (304)
..+.++|||+|||++ +++++|+++|++||.|++|.|++ +|+||||+|++.++|++||+. +...|.+++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345689999999998 99999999999999999999973 478999999999999999974 45679999999
Q ss_pred EeeccchHH
Q psy16454 172 VKKALSKEE 180 (304)
Q Consensus 172 v~~~~~~~~ 180 (304)
|.++..+..
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999976543
No 251
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.7e-17 Score=118.77 Aligned_cols=79 Identities=28% Similarity=0.526 Sum_probs=71.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
..+.++|||.|||+++++++|+++|++||.|..|.|+++ ++||||+|++.++|++|++. +...+.+++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 446689999999999999999999999999999999743 68999999999999999966 99999999999999
Q ss_pred ccchHH
Q psy16454 175 ALSKEE 180 (304)
Q Consensus 175 ~~~~~~ 180 (304)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 977543
No 252
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=5.2e-17 Score=116.57 Aligned_cols=80 Identities=30% Similarity=0.496 Sum_probs=63.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEee
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKK 174 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 174 (304)
...+..+|||+|||+++|+++|+++|++||.|++|.|+.+ +||||||+|+++++|+++ ......+.+++|.|++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~-~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSL-CGEDLIIKGISVHISN 80 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHH-TTCEEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHH-cCCCcccCCEEEEEEE
Confidence 3456689999999999999999999999999999999864 789999999999999853 2334557899999999
Q ss_pred ccchHH
Q psy16454 175 ALSKEE 180 (304)
Q Consensus 175 ~~~~~~ 180 (304)
+.++.+
T Consensus 81 a~~k~~ 86 (89)
T 3d2w_A 81 AEPKHN 86 (89)
T ss_dssp CC----
T ss_pred cCCCCc
Confidence 987654
No 253
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=1e-16 Score=134.00 Aligned_cols=86 Identities=23% Similarity=0.402 Sum_probs=77.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
..+.++|||+|||+++||++|+++|++||+|++|+|++|+.++++++||||+|.++++|++||+. +...+.++.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34567999999999999999999999999999999999999999999999999999999999976 88899999999998
Q ss_pred ccchHHH
Q psy16454 175 ALSKEEM 181 (304)
Q Consensus 175 ~~~~~~~ 181 (304)
+......
T Consensus 92 ~~~~~~~ 98 (213)
T 4f02_A 92 SQRDPSL 98 (213)
T ss_dssp CCCCTHH
T ss_pred ccccccc
Confidence 8765443
No 254
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=119.01 Aligned_cols=80 Identities=23% Similarity=0.275 Sum_probs=70.9
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCC-----e
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDS-----K 77 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g-----~ 77 (304)
.+...++|||+|||+++|+++|+++|++||+|++|.|+.+ +||||+|+++++|++||+.+ .+.+.+ +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3467899999999999999999999999999999999886 79999999999999999964 667777 9
Q ss_pred eeccccCCCcccc
Q psy16454 78 VVEPKRAVPRTEI 90 (304)
Q Consensus 78 ~i~~~~~~~~~~~ 90 (304)
.|.|.++.++...
T Consensus 84 ~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 84 YIRVKVDGPRSPS 96 (108)
T ss_dssp EEEEEESSCCSCC
T ss_pred EEEEEeCCCCCCC
Confidence 9999998876543
No 255
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=1.1e-16 Score=131.75 Aligned_cols=87 Identities=36% Similarity=0.643 Sum_probs=79.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEe
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVK 173 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 173 (304)
....+.++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.++++|++||+.+...+.++.|.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPK 87 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeee
Confidence 34456789999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred eccchHH
Q psy16454 174 KALSKEE 180 (304)
Q Consensus 174 ~~~~~~~ 180 (304)
++.+...
T Consensus 88 ~~~~~~~ 94 (196)
T 1l3k_A 88 RAVSRED 94 (196)
T ss_dssp ECCC---
T ss_pred cccCccc
Confidence 9877654
No 256
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.5e-16 Score=114.22 Aligned_cols=81 Identities=17% Similarity=0.300 Sum_probs=71.1
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeecccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKR 83 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~ 83 (304)
.....++|||+|||+++|+++|+++|++||+|.+| +.++.+++ ||||+|.++++|++|++++.+.+.++.|.|.+
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRP 78 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBC
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEE
Confidence 45678899999999999999999999999999987 55555554 99999999999999999778899999999998
Q ss_pred CCCccc
Q psy16454 84 AVPRTE 89 (304)
Q Consensus 84 ~~~~~~ 89 (304)
+.++..
T Consensus 79 a~~~~~ 84 (94)
T 2e5g_A 79 REQKEF 84 (94)
T ss_dssp SCCSCC
T ss_pred CCcCCC
Confidence 876544
No 257
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.69 E-value=7.6e-17 Score=128.43 Aligned_cols=85 Identities=33% Similarity=0.491 Sum_probs=78.1
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
....++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.+.++|++|++. +.+.+.++.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35578999999999999999999999999999999999998999999999999999999999986 57889999999999
Q ss_pred CCCccc
Q psy16454 84 AVPRTE 89 (304)
Q Consensus 84 ~~~~~~ 89 (304)
+.+...
T Consensus 147 a~~~~~ 152 (158)
T 2kn4_A 147 ARYGRP 152 (158)
T ss_dssp ECCSSC
T ss_pred CCCCCC
Confidence 886543
No 258
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.9e-17 Score=118.46 Aligned_cols=84 Identities=24% Similarity=0.370 Sum_probs=73.0
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
..+.+.++|||+|||+++|+++|+++|++|++| +++.+ .++++++||||+|.++++|++|++. +...+.++.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 345678999999999999999999999999977 55555 6788999999999999999999995 577899999999
Q ss_pred ccCCCcccc
Q psy16454 82 KRAVPRTEI 90 (304)
Q Consensus 82 ~~~~~~~~~ 90 (304)
.++.++...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2fc9_A 86 ELQGPRGSP 94 (101)
T ss_dssp EECSSCCCC
T ss_pred EEcCCCCCC
Confidence 998876543
No 259
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=118.07 Aligned_cols=85 Identities=32% Similarity=0.483 Sum_probs=75.9
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
..+.+.++|||+|||+++|+++|+++|+.| .+|.++.++.++++++||||+|+++++|++|++. +.+.|.++.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345688999999999999999999999977 4788888888999999999999999999999984 788999999999
Q ss_pred ccCCCcccc
Q psy16454 82 KRAVPRTEI 90 (304)
Q Consensus 82 ~~~~~~~~~ 90 (304)
.++.++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2fc8_A 87 DWAKPKGEG 95 (102)
T ss_dssp EECCCCCSS
T ss_pred EEecCCCCC
Confidence 999876543
No 260
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.1e-17 Score=121.65 Aligned_cols=84 Identities=14% Similarity=0.234 Sum_probs=75.9
Q ss_pred CCccCeEEEcCCCCCCCHHHHH---HHhhhCCceeEEEEEeCCCCC---CcccEEEEEeCCHHHHHHHHHh-CCCCcCCe
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLK---SHFEAWGDVVDVVVMKDPQTK---KSRGFGFITYSSAHMVDDAQAA-RPHTIDSK 77 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~~~---~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~ 77 (304)
....++|||+|||+++|+++|+ ++|++||+|.+|.|+.++.++ ++++||||+|+++++|++|++. +.+.++++
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3567899999999999999999 999999999999999887643 5669999999999999999997 68889999
Q ss_pred eeccccCCCcc
Q psy16454 78 VVEPKRAVPRT 88 (304)
Q Consensus 78 ~i~~~~~~~~~ 88 (304)
.|.|.++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999988765
No 261
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.69 E-value=2.3e-17 Score=124.33 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=63.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCee-----E
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKK-----V 170 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~-----i 170 (304)
....+|||.|||+++++++|+++|++||+|+.|.|+.+ +||||+|+++++|++||+. +...|++++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 34579999999999999999999999999999999765 7999999999999999985 999999998 6
Q ss_pred EEeeccc
Q psy16454 171 DVKKALS 177 (304)
Q Consensus 171 ~v~~~~~ 177 (304)
+|+.+.+
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 6655544
No 262
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=8.6e-17 Score=119.72 Aligned_cols=81 Identities=12% Similarity=0.155 Sum_probs=70.9
Q ss_pred CCCccCeEEEcCCCCC-CCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC---CCCcCCeee
Q psy16454 4 EPEHLRKLFIGGLDYR-TSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR---PHTIDSKVV 79 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~---~~~~~g~~i 79 (304)
...++++|||+|||++ +|+++|+++|++||+|.+|.|++ +|+||||+|++.++|++|++.+ ...+.++.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 4567899999999998 99999999999999999999974 4789999999999999999863 467899999
Q ss_pred ccccCCCcccc
Q psy16454 80 EPKRAVPRTEI 90 (304)
Q Consensus 80 ~~~~~~~~~~~ 90 (304)
.|.++..+...
T Consensus 95 ~V~~a~~~~~~ 105 (112)
T 1x4f_A 95 KVDLSEKYKKL 105 (112)
T ss_dssp EEEEECSCSSS
T ss_pred EEEECcccccc
Confidence 99998765543
No 263
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.68 E-value=1.8e-17 Score=119.25 Aligned_cols=80 Identities=30% Similarity=0.584 Sum_probs=71.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccccCCCc
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKRAVPR 87 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~~~~~ 87 (304)
++|||+|||.++|+++|+++|++||+|.+|.++.++.++++++||||+|.+.+ |++|++. +...+.++.|.+.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 9999986 477899999999998765
Q ss_pred cc
Q psy16454 88 TE 89 (304)
Q Consensus 88 ~~ 89 (304)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 264
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=4.3e-17 Score=137.66 Aligned_cols=80 Identities=16% Similarity=0.299 Sum_probs=73.1
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCC--ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWG--DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
..++|||+|||+++|+++|+++|++|| .|++|+|+.++.++++|+||||+|++.++|++||+. +.+.|.++.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999996 46889999998887
Q ss_pred CCC
Q psy16454 84 AVP 86 (304)
Q Consensus 84 ~~~ 86 (304)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 754
No 265
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=112.23 Aligned_cols=77 Identities=31% Similarity=0.583 Sum_probs=69.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh--CCcccCCeeEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK--GTHLVKGKKVD 171 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~--~~~~~~g~~i~ 171 (304)
....+.++|||.|||+++++++|+++|++||.|..|.++. +++||||+|++.++|++|++. +...+++++|+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 3345668999999999999999999999999999999986 368999999999999999984 78899999999
Q ss_pred Eeecc
Q psy16454 172 VKKAL 176 (304)
Q Consensus 172 v~~~~ 176 (304)
|++++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99874
No 266
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=1e-16 Score=128.68 Aligned_cols=85 Identities=14% Similarity=0.282 Sum_probs=76.6
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
..+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.+.++|++||+. +...|.++.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999985 67889999999998
Q ss_pred CCCccc
Q psy16454 84 AVPRTE 89 (304)
Q Consensus 84 ~~~~~~ 89 (304)
+.++..
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 876543
No 267
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=116.01 Aligned_cols=79 Identities=23% Similarity=0.389 Sum_probs=70.6
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcC--Ceeec
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTID--SKVVE 80 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~--g~~i~ 80 (304)
.+.++++|||+|||+++|+++|+++|++||+|++|.++++ ++||||+|+++++|++|++. +...+. ++.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 4567799999999999999999999999999999998764 67999999999999999985 678888 89999
Q ss_pred cccCCCcc
Q psy16454 81 PKRAVPRT 88 (304)
Q Consensus 81 ~~~~~~~~ 88 (304)
|.++.++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99887654
No 268
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=8.6e-17 Score=116.69 Aligned_cols=78 Identities=29% Similarity=0.506 Sum_probs=69.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeeccc
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALS 177 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~~ 177 (304)
..++|||+|||+++++++|+++|++||.|.+| +.++.+++ ||||+|.++++|++||+++...|+++.|.|+++.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 45799999999999999999999999999987 55555555 99999999999999999889999999999998865
Q ss_pred hHH
Q psy16454 178 KEE 180 (304)
Q Consensus 178 ~~~ 180 (304)
+..
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 269
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=4.5e-17 Score=114.79 Aligned_cols=71 Identities=20% Similarity=0.307 Sum_probs=65.4
Q ss_pred ceEEEcCCCCCC------CHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCe-eEE
Q psy16454 100 KKLFVGSLRDDI------TEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGK-KVD 171 (304)
Q Consensus 100 ~~l~v~~l~~~~------~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~-~i~ 171 (304)
++|||+|||+.+ ++++|+++|++||.|.+|.|+ +.+++++|||||+|.++++|++|++. ++..++++ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999999999987 45789999999999999999999986 88999999 887
Q ss_pred E
Q psy16454 172 V 172 (304)
Q Consensus 172 v 172 (304)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 270
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=1.5e-16 Score=128.96 Aligned_cols=85 Identities=22% Similarity=0.357 Sum_probs=78.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
...+.++|||.|||+++++++|+++|++||.|+.|.|+.++ ++++++||||+|++.++|++||+. +...|++++|.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999988 899999999999999999999985 8899999999999
Q ss_pred eccchHH
Q psy16454 174 KALSKEE 180 (304)
Q Consensus 174 ~~~~~~~ 180 (304)
++.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9977654
No 271
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=2.5e-16 Score=118.60 Aligned_cols=81 Identities=20% Similarity=0.324 Sum_probs=73.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeec
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
.+.++|||.|||+++++++|+++|++||.|..|.|+.+. .+++||||+|.+.++|++|++. ++..++++.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 355799999999999999999999999999999998754 4589999999999999999985 999999999999999
Q ss_pred cchHH
Q psy16454 176 LSKEE 180 (304)
Q Consensus 176 ~~~~~ 180 (304)
.++..
T Consensus 83 ~~~~~ 87 (115)
T 3lqv_A 83 NANRA 87 (115)
T ss_dssp CHHHH
T ss_pred cCChh
Confidence 87554
No 272
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=124.89 Aligned_cols=81 Identities=25% Similarity=0.442 Sum_probs=73.5
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
.+.+.++|||+|||+++|+++|+++|++||+|.+|+|+.++.++++++||||+|+++++|++|++. +...+.++.|.|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 346789999999999999999999999999999999999999999999999999999999999975 4677889988887
Q ss_pred cC
Q psy16454 83 RA 84 (304)
Q Consensus 83 ~~ 84 (304)
++
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 63
No 273
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=9.2e-17 Score=119.01 Aligned_cols=83 Identities=12% Similarity=0.170 Sum_probs=73.1
Q ss_pred CCCccCeEEEcCCCCCC------CHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCC
Q psy16454 4 EPEHLRKLFIGGLDYRT------SSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDS 76 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~------t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g 76 (304)
+....++|||+|||+++ |+++|+++|++||+|.+|.|+ +.++++++||||+|.++++|++|++. +...+.+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 33457899999999999 789999999999999999988 46789999999999999999999996 5788899
Q ss_pred e-eeccccCCCcc
Q psy16454 77 K-VVEPKRAVPRT 88 (304)
Q Consensus 77 ~-~i~~~~~~~~~ 88 (304)
+ .|.|.++....
T Consensus 89 ~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 89 QHTFRVNLFTDFD 101 (105)
T ss_dssp TCEEEEECSCCCC
T ss_pred CceEEEEEcchHh
Confidence 8 99998887544
No 274
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.2e-16 Score=117.47 Aligned_cols=75 Identities=17% Similarity=0.340 Sum_probs=68.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeec
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
...++|||+|||+++++++|+++|++||.|.+|.|. ++++||||+|.+.++|++|++. +...+++++|+|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 345799999999999999999999999999999997 4578999999999999999976 999999999999998
Q ss_pred cc
Q psy16454 176 LS 177 (304)
Q Consensus 176 ~~ 177 (304)
.+
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 275
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=4.9e-17 Score=119.59 Aligned_cols=75 Identities=24% Similarity=0.451 Sum_probs=69.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccch
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALSK 178 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~~ 178 (304)
++|||+|||+++|+++|+++|++||.|+.|.|+.+ +++||||+|++.++|++|++. +...+++++|.|+++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 678999999999999999985 888999999999999876
Q ss_pred H
Q psy16454 179 E 179 (304)
Q Consensus 179 ~ 179 (304)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 276
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1.4e-16 Score=118.64 Aligned_cols=79 Identities=27% Similarity=0.475 Sum_probs=70.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 94 ~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
......++|||+|||+++++++|+++|++||.|+.|.|+ ++||||+|.+.++|++|++. ++..+++++|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 334566899999999999999999999999999999987 68999999999999999976 999999999999
Q ss_pred eeccchHH
Q psy16454 173 KKALSKEE 180 (304)
Q Consensus 173 ~~~~~~~~ 180 (304)
+++.++..
T Consensus 98 ~~a~~~~~ 105 (108)
T 2jvo_A 98 VYSKLPAK 105 (108)
T ss_dssp ESCSCCC-
T ss_pred EEecCCCC
Confidence 99977643
No 277
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=114.94 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=69.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
..+.++|||.|||+++|+++|+++|++||.|..|.|++ +||||+|.+.++|++||+. +...+++++|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999974 3999999999999999985 99999999999999
Q ss_pred ccchH
Q psy16454 175 ALSKE 179 (304)
Q Consensus 175 ~~~~~ 179 (304)
+.++.
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97663
No 278
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.3e-17 Score=117.53 Aligned_cols=76 Identities=29% Similarity=0.515 Sum_probs=66.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCc-eeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CC-cccCCeeEEEe
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGE-VTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GT-HLVKGKKVDVK 173 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~-v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~-~~~~g~~i~v~ 173 (304)
.+.++|||.|||+++|+++|+++|++||. |..+.+. +++||||+|++.++|++||+. +. ..+++++|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45679999999999999999999999999 6655552 468999999999999999975 88 89999999999
Q ss_pred eccchH
Q psy16454 174 KALSKE 179 (304)
Q Consensus 174 ~~~~~~ 179 (304)
++.++.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997653
No 279
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.9e-16 Score=117.13 Aligned_cols=82 Identities=16% Similarity=0.417 Sum_probs=73.5
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
.+...++|||+|||.++|+++|+++|++||+|.+|.|+.+ ++||||+|.+.++|++|++. +...+.++.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4567889999999999999999999999999999999875 68999999999999999965 6888999999999
Q ss_pred cCCCccccC
Q psy16454 83 RAVPRTEIN 91 (304)
Q Consensus 83 ~~~~~~~~~ 91 (304)
++.++....
T Consensus 95 ~a~~~~~~~ 103 (109)
T 1x4g_A 95 WGKESPDMT 103 (109)
T ss_dssp CCCCCCSSC
T ss_pred ecCCCCCCC
Confidence 988766543
No 280
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=8.4e-17 Score=117.21 Aligned_cols=77 Identities=23% Similarity=0.461 Sum_probs=68.8
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 96 GATVKKLFVGSLRD-DITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 96 ~~~~~~l~v~~l~~-~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
..+.++|||+|||+ ++++++|+++|++||.|..|.|. ++||||+|.+.++|++|++. +...+.+++|.|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34568999999999 99999999999999999999984 68999999999999999986 9999999999999
Q ss_pred eccchHH
Q psy16454 174 KALSKEE 180 (304)
Q Consensus 174 ~~~~~~~ 180 (304)
++.++..
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9976543
No 281
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.9e-16 Score=111.58 Aligned_cols=76 Identities=18% Similarity=0.444 Sum_probs=68.5
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh--CCCCcCCeeec
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA--RPHTIDSKVVE 80 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~--~~~~~~g~~i~ 80 (304)
.++...++|||+|||+++|+++|+++|++||+|.+|.+++ +++||||+|.+.++|++|++. +...+.++.|.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 4556789999999999999999999999999999999987 368999999999999999995 56788999998
Q ss_pred cccC
Q psy16454 81 PKRA 84 (304)
Q Consensus 81 ~~~~ 84 (304)
+.++
T Consensus 81 v~~a 84 (85)
T 2ytc_A 81 VKWG 84 (85)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8775
No 282
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5e-17 Score=122.42 Aligned_cols=86 Identities=17% Similarity=0.189 Sum_probs=72.5
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
+.+.++|||+|||+++|+++|+++|++||.|.+|.+..+..++++++||||+|.+.++|++|++. +...+.++.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999985443333333788999999999999999999986 57889999999999
Q ss_pred CCCcccc
Q psy16454 84 AVPRTEI 90 (304)
Q Consensus 84 ~~~~~~~ 90 (304)
+.++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 8876543
No 283
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.67 E-value=2.5e-16 Score=124.45 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=70.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCC--eeEEE
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKG--KKVDV 172 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g--~~i~v 172 (304)
.....+|||.||++.+|+++|+++|++||.|++|.|+.+ ++++||||+|++.++|++|++. ++..|.+ ++|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 345578999999999999999999999999999998753 2578999999999999999986 8899965 99999
Q ss_pred eeccchH
Q psy16454 173 KKALSKE 179 (304)
Q Consensus 173 ~~~~~~~ 179 (304)
++++++.
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9998764
No 284
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.3e-16 Score=115.13 Aligned_cols=77 Identities=16% Similarity=0.289 Sum_probs=69.7
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
.+...++|||+|||.++|+++|+++|++||.|.+|+++ ++++||||+|.+.++|++|++. +...+.++.|.|.
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45567899999999999999999999999999999998 3578999999999999999975 6888999999999
Q ss_pred cCCC
Q psy16454 83 RAVP 86 (304)
Q Consensus 83 ~~~~ 86 (304)
++.+
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 8875
No 285
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.67 E-value=6.9e-17 Score=115.94 Aligned_cols=80 Identities=26% Similarity=0.439 Sum_probs=63.1
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPK 82 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~ 82 (304)
..+.+.++|||+|||+++|+++|+++|++||+|.+|.|+.+ +||||||+|+++++|+++.. ....+.++.+.+.
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHIS 79 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEE
Confidence 34568899999999999999999999999999999999874 78999999999999985432 2444668899988
Q ss_pred cCCCcc
Q psy16454 83 RAVPRT 88 (304)
Q Consensus 83 ~~~~~~ 88 (304)
++.++.
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 887654
No 286
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=8.2e-17 Score=120.07 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=70.0
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCC-ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeec
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWG-DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVE 80 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~ 80 (304)
+.+...++|||+|||+++|+++|+++|++|| +|..|.|+.+ .+++||||+|++.++|++|++. +...+.++.|.
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4567788999999999999999999999999 8999988643 4789999999999999999975 57889999999
Q ss_pred cccCCCc
Q psy16454 81 PKRAVPR 87 (304)
Q Consensus 81 ~~~~~~~ 87 (304)
|.++...
T Consensus 99 V~~a~~~ 105 (111)
T 2jvr_A 99 VERDDNP 105 (111)
T ss_dssp EEESCC-
T ss_pred EEECCCC
Confidence 9887654
No 287
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=4.6e-18 Score=128.42 Aligned_cols=88 Identities=15% Similarity=0.250 Sum_probs=80.2
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeE--------EEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCC
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVD--------VVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHT 73 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~ 73 (304)
++..+.++|||+|||+++|+++|+++|++||+|.+ |.|+.++.++++++||||+|.+.++|++|++. +...
T Consensus 2 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 2 QDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 45678899999999999999999999999999998 89999988999999999999999999999995 5788
Q ss_pred cCCeeeccccCCCcccc
Q psy16454 74 IDSKVVEPKRAVPRTEI 90 (304)
Q Consensus 74 ~~g~~i~~~~~~~~~~~ 90 (304)
+.++.|.|.++.++...
T Consensus 82 ~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 82 FSGNPIKVSFATRRADF 98 (116)
Confidence 99999999998876544
No 288
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=120.40 Aligned_cols=79 Identities=20% Similarity=0.337 Sum_probs=69.1
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCC---CCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeec
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQT---KKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVE 80 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~---~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~ 80 (304)
.....++|||+|||+++|+++|+++|++||+|. +.++.++.+ +++++||||+|+++++|++|++.+ +.++++.+.
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~ 81 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYL 81 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEE
Confidence 456789999999999999999999999999999 888887776 699999999999999999999987 347787776
Q ss_pred cccC
Q psy16454 81 PKRA 84 (304)
Q Consensus 81 ~~~~ 84 (304)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6543
No 289
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=3.1e-16 Score=115.72 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=71.1
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
...+.++|||+|||+++|+++|+++|++||+|.+|.+++ +||||+|.++++|++|++. +.+.+.++.|.|.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 446779999999999999999999999999999999873 4999999999999999995 6788999999999
Q ss_pred cCCCccccC
Q psy16454 83 RAVPRTEIN 91 (304)
Q Consensus 83 ~~~~~~~~~ 91 (304)
++.++....
T Consensus 79 ~a~~~~~~~ 87 (103)
T 2dgu_A 79 FAKPPDQKR 87 (103)
T ss_dssp ECCCCCCCC
T ss_pred EcCCCcccc
Confidence 988765443
No 290
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=2.7e-16 Score=129.31 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=73.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeeccc
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALS 177 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~~ 177 (304)
..++|||.|||+++|+++|+++|++||.|..|.|+++. +++++|||||+|+++++|++||+..+..++|++|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 45799999999999999999999999999999999876 58899999999999999999998877799999999998754
Q ss_pred h
Q psy16454 178 K 178 (304)
Q Consensus 178 ~ 178 (304)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 291
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=9.1e-17 Score=117.18 Aligned_cols=83 Identities=18% Similarity=0.381 Sum_probs=73.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeE
Q psy16454 96 GATVKKLFVGSLRDDITEEDLK----EYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKV 170 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~----~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i 170 (304)
..+.++|||.|||+++++++|+ ++|++||.|..|.++. ++++++||||+|.+.++|++|++. ++..+.+++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3456899999999999999999 9999999999999874 457889999999999999999976 9999999999
Q ss_pred EEeeccchHHH
Q psy16454 171 DVKKALSKEEM 181 (304)
Q Consensus 171 ~v~~~~~~~~~ 181 (304)
.|+++.++.+.
T Consensus 82 ~v~~a~~~~~~ 92 (97)
T 1nu4_A 82 RIQYAKTDSDI 92 (97)
T ss_dssp EEEECSSCCTH
T ss_pred EEEEccCCCcc
Confidence 99999876543
No 292
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.5e-16 Score=115.33 Aligned_cols=81 Identities=25% Similarity=0.447 Sum_probs=71.8
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
+...+.++|||+|||+++|+++|+++|++||+|.+|.++++ ++||||+|.+.++|++|++. +...+.++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 34567789999999999999999999999999999999854 68999999999999999965 678899999999
Q ss_pred ccCCCccc
Q psy16454 82 KRAVPRTE 89 (304)
Q Consensus 82 ~~~~~~~~ 89 (304)
.++.++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpj_A 84 RFACHSAS 91 (99)
T ss_dssp EESSCCSC
T ss_pred EEcCCCCC
Confidence 99876543
No 293
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=115.67 Aligned_cols=79 Identities=24% Similarity=0.373 Sum_probs=70.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
...+.++|||+|||+++++++|+++|++|+.|..+ ..++++++||||+|.+.++|++|++. +...+.+++|.|+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34466899999999999999999999999887666 34678999999999999999999985 8899999999999
Q ss_pred eccch
Q psy16454 174 KALSK 178 (304)
Q Consensus 174 ~~~~~ 178 (304)
++.++
T Consensus 87 ~a~~~ 91 (96)
T 1fjc_A 87 YTGEK 91 (96)
T ss_dssp ECSSS
T ss_pred EcCCC
Confidence 98765
No 294
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.1e-17 Score=117.50 Aligned_cols=78 Identities=31% Similarity=0.580 Sum_probs=67.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeecc
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKAL 176 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~ 176 (304)
.+.++|||+|||+++++++|+++|++||.|.+|.|+.+ +++||||+|+++++|++|+.. ...+.+++|+|+++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 34589999999999999999999999999999999764 689999999999999875443 566799999999987
Q ss_pred chHH
Q psy16454 177 SKEE 180 (304)
Q Consensus 177 ~~~~ 180 (304)
++..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 295
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.66 E-value=3.7e-16 Score=114.00 Aligned_cols=76 Identities=24% Similarity=0.490 Sum_probs=68.4
Q ss_pred CCCCcceEEEcCCCC-CCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEE
Q psy16454 95 AGATVKKLFVGSLRD-DITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDV 172 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~-~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 172 (304)
...+.++|||+|||+ ++++++|+++|++||.|..|.|. ++||||+|.+.++|++|++. ++..+.+++|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344668999999998 99999999999999999999983 68999999999999999985 889999999999
Q ss_pred eeccch
Q psy16454 173 KKALSK 178 (304)
Q Consensus 173 ~~~~~~ 178 (304)
+++.++
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998654
No 296
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=112.15 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=64.0
Q ss_pred cCeEEEcCCCCCC------CHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCe-ee
Q psy16454 8 LRKLFIGGLDYRT------SSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSK-VV 79 (304)
Q Consensus 8 ~~~v~V~nLp~~~------t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~-~i 79 (304)
+++|||+|||+++ |+++|+++|++||+|.+|.|+ +.++++++||||+|.++++|++|++. +...+.++ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 789999999999999999987 46789999999999999999999996 46777877 66
Q ss_pred cc
Q psy16454 80 EP 81 (304)
Q Consensus 80 ~~ 81 (304)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 54
No 297
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=112.34 Aligned_cols=79 Identities=22% Similarity=0.366 Sum_probs=71.4
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
..+.+.++|||+|||+++|+++|+++|++||+|.+|.++++ ||||+|.++++|++|++. +...+.++.|.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 45678899999999999999999999999999999999843 999999999999999985 688899999999
Q ss_pred ccCCCccc
Q psy16454 82 KRAVPRTE 89 (304)
Q Consensus 82 ~~~~~~~~ 89 (304)
.++.+...
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99887643
No 298
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=2.2e-16 Score=127.98 Aligned_cols=84 Identities=17% Similarity=0.261 Sum_probs=76.4
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
+...++|||+|||+++|+++|+++|++||+|++|.|+.++ ++++++||||+|++.++|++|++. +...+.++.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999997 899999999999999999999995 57889999999998
Q ss_pred CCCccc
Q psy16454 84 AVPRTE 89 (304)
Q Consensus 84 ~~~~~~ 89 (304)
+.....
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 876543
No 299
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.8e-16 Score=117.78 Aligned_cols=78 Identities=15% Similarity=0.268 Sum_probs=69.8
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCC----hhH----HHHHHH--h-CCcc
Q psy16454 100 KKLFVGSL----RDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYND----YDP----VDKACL--K-GTHL 164 (304)
Q Consensus 100 ~~l~v~~l----~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~----~~~----a~~A~~--~-~~~~ 164 (304)
++|||.|| |+.+++++|+++|++||+|.+|.++.|++|++++|||||+|.+ +++ |.+|++ . +...
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 778877 4 8899
Q ss_pred cCCeeEEEeeccc
Q psy16454 165 VKGKKVDVKKALS 177 (304)
Q Consensus 165 ~~g~~i~v~~~~~ 177 (304)
|++++|+|.....
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999987754
No 300
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5e-16 Score=112.12 Aligned_cols=80 Identities=19% Similarity=0.363 Sum_probs=71.7
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
..+...++|||+|||+++|+++|+++|++||+|.+|.++++ ||||+|+++++|++|++. +.+.+.++.|.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 45678899999999999999999999999999999999843 999999999999999975 678899999999
Q ss_pred ccCCCcccc
Q psy16454 82 KRAVPRTEI 90 (304)
Q Consensus 82 ~~~~~~~~~ 90 (304)
.++.++...
T Consensus 77 ~~a~~~~~~ 85 (92)
T 2dgt_A 77 QLSTSRLRT 85 (92)
T ss_dssp EESSCCCSC
T ss_pred EEccCCCCC
Confidence 999876543
No 301
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1e-16 Score=114.77 Aligned_cols=80 Identities=23% Similarity=0.408 Sum_probs=68.6
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccC
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRA 84 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~ 84 (304)
...+++|||+|||+++|+++|+++|++||+|.+|.|+.+ +++||||+|+++++|++|+.. ...+.++.|.+.++
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNA 75 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEec
Confidence 356799999999999999999999999999999999864 789999999999999876543 45568899999888
Q ss_pred CCcccc
Q psy16454 85 VPRTEI 90 (304)
Q Consensus 85 ~~~~~~ 90 (304)
.++...
T Consensus 76 ~~~~~~ 81 (88)
T 1wf0_A 76 EPKHNS 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 302
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.5e-16 Score=113.55 Aligned_cols=80 Identities=14% Similarity=0.223 Sum_probs=69.9
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
.++..++|||+|||+++|+++|+++|++||+|. +.++.+ ++++||||+|.+.++|++|++. +...+.++.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345689999999999999999999999999997 666653 5789999999999999999966 6888999999999
Q ss_pred cCCCcc
Q psy16454 83 RAVPRT 88 (304)
Q Consensus 83 ~~~~~~ 88 (304)
++.++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 887653
No 303
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=5.1e-16 Score=118.67 Aligned_cols=82 Identities=15% Similarity=0.223 Sum_probs=71.6
Q ss_pred CCccCeEEEcCCCCCCCHHHHH----HHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeee
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLK----SHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVV 79 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~----~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i 79 (304)
..+.++|||+|||+++++++|+ ++|++||+|.+|.+.. +++++|||||+|.+.++|++|++. +...+.++.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4567899999999999999876 6999999999988754 567899999999999999999976 4788999999
Q ss_pred ccccCCCccc
Q psy16454 80 EPKRAVPRTE 89 (304)
Q Consensus 80 ~~~~~~~~~~ 89 (304)
.|.++.++..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999886554
No 304
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9.3e-16 Score=111.84 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=68.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
..+.++|||.|| ++|+++|+++|++||.|..|.|. ++++||||+|++.++|++||+. +...+.+++|.|++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345679999996 89999999999999999999984 4678999999999999999966 88999999999999
Q ss_pred ccchHH
Q psy16454 175 ALSKEE 180 (304)
Q Consensus 175 ~~~~~~ 180 (304)
+.++..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 977643
No 305
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=111.62 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=69.4
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhC--CceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeec
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAW--GDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVE 80 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~ 80 (304)
...+.++|||+|||+++|+++|+++|++| +.|.+|.++ ++||||+|.+.++|++|++ ++...+.++.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34577899999999999999999999999 889988865 4699999999999999999 568889999999
Q ss_pred cccCCCccc
Q psy16454 81 PKRAVPRTE 89 (304)
Q Consensus 81 ~~~~~~~~~ 89 (304)
|.++.++..
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999887654
No 306
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.64 E-value=7.6e-16 Score=114.59 Aligned_cols=78 Identities=15% Similarity=0.300 Sum_probs=70.0
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
..+...++|||+|||+++|+++|+++|++||+|.+|.++ ++||||+|.+.++|++|++. +...+.++.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999999999999999998 68999999999999999985 688899999999
Q ss_pred ccCCCcc
Q psy16454 82 KRAVPRT 88 (304)
Q Consensus 82 ~~~~~~~ 88 (304)
.++.+..
T Consensus 98 ~~a~~~~ 104 (108)
T 2jvo_A 98 VYSKLPA 104 (108)
T ss_dssp ESCSCCC
T ss_pred EEecCCC
Confidence 9987654
No 307
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.2e-16 Score=116.61 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=68.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeecc
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKAL 176 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~ 176 (304)
..++|||.|||+++++++|+++|++||.|..|.|+. +++||||+|.+.++|++||+. +...+.+++|.|+++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 357999999999999999999999999999998863 568999999999999999975 9999999999999986
Q ss_pred ch
Q psy16454 177 SK 178 (304)
Q Consensus 177 ~~ 178 (304)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 308
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4e-16 Score=112.84 Aligned_cols=81 Identities=19% Similarity=0.340 Sum_probs=69.8
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCc-eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CC-CCcCCeee
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGD-VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RP-HTIDSKVV 79 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~-~~~~g~~i 79 (304)
..+...++|||+|||+++|+++|+++|++||+ |..+.++ +++||||+|.++++|++|++. +. ..+.++.|
T Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 75 (93)
T 2cqh_A 3 SGSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIM 75 (93)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEE
Confidence 35678899999999999999999999999999 6666553 468999999999999999985 45 78999999
Q ss_pred ccccCCCcccc
Q psy16454 80 EPKRAVPRTEI 90 (304)
Q Consensus 80 ~~~~~~~~~~~ 90 (304)
.|.++.++...
T Consensus 76 ~v~~a~~~~~~ 86 (93)
T 2cqh_A 76 EVDYSVSKKLR 86 (93)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCcccc
Confidence 99998876543
No 309
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.64 E-value=4.2e-16 Score=111.57 Aligned_cols=74 Identities=12% Similarity=0.202 Sum_probs=67.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeecc
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKAL 176 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~ 176 (304)
..++|||+|||+++++++|+++|++| .|.+|.|. ++++||||+|.++++|++|++. +...+.+++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999884 6789999999999999999985 9999999999999985
Q ss_pred ch
Q psy16454 177 SK 178 (304)
Q Consensus 177 ~~ 178 (304)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 310
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.64 E-value=1.1e-15 Score=122.14 Aligned_cols=82 Identities=32% Similarity=0.513 Sum_probs=76.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccc
Q psy16454 99 VKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALS 177 (304)
Q Consensus 99 ~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~ 177 (304)
.++|||.|||+++++++|+++|++||.|.+|.++.++.++++++||||+|.++++|++|++. +...+.+++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 47899999999999999999999999999999999998999999999999999999999975 99999999999999876
Q ss_pred hHH
Q psy16454 178 KEE 180 (304)
Q Consensus 178 ~~~ 180 (304)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 311
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.9e-16 Score=117.40 Aligned_cols=78 Identities=23% Similarity=0.360 Sum_probs=67.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCC---CCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEe
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKET---GKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVK 173 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~---~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 173 (304)
...++|||+|||+++++++|+++|++||.|. +.++.++.+ ++++|||||+|+++++|++||+.. +.++++.|.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 3567999999999999999999999999999 888888777 699999999999999999999864 34777777765
Q ss_pred ecc
Q psy16454 174 KAL 176 (304)
Q Consensus 174 ~~~ 176 (304)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
No 312
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=1e-15 Score=114.28 Aligned_cols=75 Identities=19% Similarity=0.375 Sum_probs=67.4
Q ss_pred CccCeEEEcCCCCC-CCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 6 EHLRKLFIGGLDYR-TSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 6 ~~~~~v~V~nLp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
...++|||+|||++ +|+++|+++|++||+|.+|.| +++||||+|+++++|++|++. +...+.++.|.|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 35589999999999 999999999999999999998 468999999999999999955 68889999999999
Q ss_pred CCCcc
Q psy16454 84 AVPRT 88 (304)
Q Consensus 84 ~~~~~ 88 (304)
+.+..
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87543
No 313
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=6.8e-16 Score=112.28 Aligned_cols=78 Identities=22% Similarity=0.242 Sum_probs=69.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEE-EEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSV-ALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v-~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
...++|||+|||+++++++|+++|++||.|..| .|+.++.++ .|||+|.+.++|++||+. +...+.+++|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345799999999999999999999999999999 488776553 399999999999999975 99999999999999
Q ss_pred ccch
Q psy16454 175 ALSK 178 (304)
Q Consensus 175 ~~~~ 178 (304)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9876
No 314
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=7.9e-16 Score=123.23 Aligned_cols=83 Identities=37% Similarity=0.782 Sum_probs=76.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeeccc
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALS 177 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~~ 177 (304)
+.++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.++++|++|++. .+.++++.|.|.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 457999999999999999999999999999999999999999999999999999999999985 5789999999999887
Q ss_pred hHHH
Q psy16454 178 KEEM 181 (304)
Q Consensus 178 ~~~~ 181 (304)
+.+.
T Consensus 81 ~~~~ 84 (167)
T 2cjk_A 81 RDEQ 84 (167)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 6654
No 315
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=2.7e-16 Score=114.40 Aligned_cols=80 Identities=21% Similarity=0.291 Sum_probs=70.1
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
..++.++|||+|||+++|+++|+++|++|+.|..+ ..++++++||||+|.++++|++|++. +...+.++.|.+.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44578999999999999999999999999988666 35678999999999999999999995 5678999999999
Q ss_pred cCCCcc
Q psy16454 83 RAVPRT 88 (304)
Q Consensus 83 ~~~~~~ 88 (304)
++.++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 887654
No 316
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.63 E-value=1.1e-15 Score=122.46 Aligned_cols=82 Identities=22% Similarity=0.379 Sum_probs=76.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeecc
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKAL 176 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~ 176 (304)
+.++|||+|||+++++++|+++|++||.|.+|.++.++.++++++||||+|.++++|++|++. +...+.+++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 457999999999999999999999999999999999998999999999999999999999974 9999999999999987
Q ss_pred chH
Q psy16454 177 SKE 179 (304)
Q Consensus 177 ~~~ 179 (304)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 553
No 317
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.5e-16 Score=116.53 Aligned_cols=78 Identities=14% Similarity=0.271 Sum_probs=67.6
Q ss_pred CCCcceEEE--cCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCccc-----CC
Q psy16454 96 GATVKKLFV--GSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLV-----KG 167 (304)
Q Consensus 96 ~~~~~~l~v--~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~-----~g 167 (304)
..++++||| +||++++++++|+++|++||.|++|.|+. .|+||||+|+++++|++|++. ++..+ .+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345678999 77999999999999999999999998863 368999999999999999976 88777 68
Q ss_pred eeEEEeeccchH
Q psy16454 168 KKVDVKKALSKE 179 (304)
Q Consensus 168 ~~i~v~~~~~~~ 179 (304)
++|.|.++...+
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 899999887554
No 318
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=1.7e-15 Score=110.44 Aligned_cols=76 Identities=24% Similarity=0.379 Sum_probs=67.7
Q ss_pred CCCccCeEEEcCCCC-CCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 4 EPEHLRKLFIGGLDY-RTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
.+.++++|||+|||+ ++|+++|+++|++||.|.+|.+. ++||||+|.+.++|++|++. +...+.++.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 456789999999998 99999999999999999999983 68999999999999999995 577889999999
Q ss_pred ccCCCc
Q psy16454 82 KRAVPR 87 (304)
Q Consensus 82 ~~~~~~ 87 (304)
.++.++
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 887654
No 319
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=3.7e-15 Score=112.99 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=67.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccce-EEEEeCChhHHHHHHHh-CCcccCC--eeEE
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGF-GFVEYNDYDPVDKACLK-GTHLVKG--KKVD 171 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~-afV~f~~~~~a~~A~~~-~~~~~~g--~~i~ 171 (304)
......|||.||++.+++++|+++|++||.|++|.|+. + .|| |||+|++.++|++|++. ++..|.+ ++|+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 34455688999999999999999999999999999965 2 276 99999999999999976 9999987 6899
Q ss_pred EeeccchH
Q psy16454 172 VKKALSKE 179 (304)
Q Consensus 172 v~~~~~~~ 179 (304)
|++++++.
T Consensus 96 V~~Ak~~~ 103 (124)
T 2e5i_A 96 IEYARPTR 103 (124)
T ss_dssp EECCSCSC
T ss_pred EEEecCCc
Confidence 99997664
No 320
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=1.1e-15 Score=109.04 Aligned_cols=72 Identities=24% Similarity=0.550 Sum_probs=65.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcC----C-------ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCccc
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQF----G-------EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLV 165 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~----G-------~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~ 165 (304)
.+.++|||+|||+++++++|+++|++| | .|.++.+..+ ++||||+|.++++|++|+..+...+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 456899999999999999999999999 8 8999998754 6899999999999999995599999
Q ss_pred CCeeEEEee
Q psy16454 166 KGKKVDVKK 174 (304)
Q Consensus 166 ~g~~i~v~~ 174 (304)
++++|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999975
No 321
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=2.2e-15 Score=114.72 Aligned_cols=78 Identities=19% Similarity=0.289 Sum_probs=69.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccce-EEEEeCChhHHHHHHHh-CCcccCC--eeEEE
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGF-GFVEYNDYDPVDKACLK-GTHLVKG--KKVDV 172 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~-afV~f~~~~~a~~A~~~-~~~~~~g--~~i~v 172 (304)
.....|||.||++.+|+++|+++|++||.|.+|.|+.+ .++| |||+|++.++|++|++. ++..|.+ ++|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 45568899999999999999999999999999998764 3577 99999999999999977 9999988 89999
Q ss_pred eeccchH
Q psy16454 173 KKALSKE 179 (304)
Q Consensus 173 ~~~~~~~ 179 (304)
++++++.
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9997653
No 322
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=4e-16 Score=113.72 Aligned_cols=83 Identities=19% Similarity=0.374 Sum_probs=72.4
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHH----HHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCe
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLK----SHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSK 77 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~----~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~ 77 (304)
.+..++++|||+|||+++|+++|+ ++|++||+|.+|.++. ++.+++||||+|.+.++|++|++. +...+.++
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 355788999999999999999999 9999999999999874 466889999999999999999985 67889999
Q ss_pred eeccccCCCcc
Q psy16454 78 VVEPKRAVPRT 88 (304)
Q Consensus 78 ~i~~~~~~~~~ 88 (304)
.|.+.++.+..
T Consensus 80 ~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 PMRIQYAKTDS 90 (97)
T ss_dssp ECEEEECSSCC
T ss_pred EEEEEEccCCC
Confidence 99999887654
No 323
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=8.1e-16 Score=111.96 Aligned_cols=78 Identities=23% Similarity=0.370 Sum_probs=67.8
Q ss_pred CCCccCeEEEcCCCC-CCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 4 EPEHLRKLFIGGLDY-RTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
+..+.++|||+|||+ ++|+++|+++|++||+|.+|.+. ++||||+|.+.++|++|++. +...+.++.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 456889999999998 99999999999999999999984 58999999999999999995 678888999999
Q ss_pred ccCCCccc
Q psy16454 82 KRAVPRTE 89 (304)
Q Consensus 82 ~~~~~~~~ 89 (304)
.++.++..
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 88865543
No 324
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=1.3e-15 Score=108.68 Aligned_cols=73 Identities=22% Similarity=0.444 Sum_probs=65.9
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhC----C-------ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCC
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAW----G-------DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHT 73 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~----G-------~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~ 73 (304)
..+.++|||+|||+++|+++|+++|++| | +|.+|.++.+ ++||||+|.++++|++|+.++...
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCE
Confidence 4678999999999999999999999999 8 8999998754 689999999999999999667888
Q ss_pred cCCeeecccc
Q psy16454 74 IDSKVVEPKR 83 (304)
Q Consensus 74 ~~g~~i~~~~ 83 (304)
+.++.+.+++
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999988764
No 325
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.61 E-value=1.4e-15 Score=120.06 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=71.6
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~~~ 82 (304)
.....++|||+|||+++|+++|+++|++||+|.+|+|+.+ +++||||+|.+.++|++|++ ++...+.++.|.|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3457799999999999999999999999999999999876 67999999999999999998 46888999999999
Q ss_pred cCCCc
Q psy16454 83 RAVPR 87 (304)
Q Consensus 83 ~~~~~ 87 (304)
++.++
T Consensus 144 ~a~~~ 148 (150)
T 2i2y_A 144 LSNGE 148 (150)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 88764
No 326
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=2.6e-16 Score=123.26 Aligned_cols=84 Identities=24% Similarity=0.386 Sum_probs=71.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEE--E---eeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVA--L---VTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKK 169 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~--i---~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~ 169 (304)
..+.++|||+|||+++|+++|+++|++||.|..+. + +....++++++||||+|.+.++|++||+. +...|.+++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34568999999999999999999999999987641 0 11123678999999999999999999985 999999999
Q ss_pred EEEeeccchH
Q psy16454 170 VDVKKALSKE 179 (304)
Q Consensus 170 i~v~~~~~~~ 179 (304)
|.|.++.+..
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997654
No 327
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=114.39 Aligned_cols=76 Identities=9% Similarity=0.041 Sum_probs=67.8
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
....++|||+|||+++|+++|+++|++||+|.+|.|+. +++||||+|.++++|++|++. +...+.++.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999998874 568999999999999999985 57889999999988
Q ss_pred CCC
Q psy16454 84 AVP 86 (304)
Q Consensus 84 ~~~ 86 (304)
+..
T Consensus 81 a~~ 83 (111)
T 1whx_A 81 API 83 (111)
T ss_dssp EET
T ss_pred CCC
Confidence 764
No 328
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.61 E-value=1.5e-15 Score=108.65 Aligned_cols=76 Identities=9% Similarity=0.138 Sum_probs=68.2
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccccC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKRA 84 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~~ 84 (304)
...++|||+|||+++|+++|+++|++| +|.+|++. ++++||||+|.++++|++|++. +...+.++.+.+.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 467899999999999999999999999 99999884 5789999999999999999994 578899999999887
Q ss_pred CCcc
Q psy16454 85 VPRT 88 (304)
Q Consensus 85 ~~~~ 88 (304)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6544
No 329
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=110.73 Aligned_cols=79 Identities=22% Similarity=0.202 Sum_probs=69.8
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEE-EEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeecccc
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDV-VVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVEPKR 83 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v-~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~~~~ 83 (304)
...++|||+|||+++|+++|+++|++||+|.+| .|+.++.++ .|||+|.+.++|++|++ ++...+.++.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457899999999999999999999999999999 477776543 39999999999999998 568889999999999
Q ss_pred CCCcc
Q psy16454 84 AVPRT 88 (304)
Q Consensus 84 ~~~~~ 88 (304)
+.++.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 88763
No 330
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=8.6e-16 Score=115.65 Aligned_cols=68 Identities=24% Similarity=0.285 Sum_probs=59.6
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeec
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVE 80 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~ 80 (304)
...++|||+|||+++|+++|+++|++||+|++|.|+.+ +||||+|+++++|++||+. +...|+++.+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 46789999999999999999999999999999999875 7999999999999999995 67788888743
No 331
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=1.9e-15 Score=139.20 Aligned_cols=84 Identities=24% Similarity=0.459 Sum_probs=77.2
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccccC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKRA 84 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~~ 84 (304)
...++|||+|||++||+++|+++|++||+|+.|.|+.++.++++++||||+|.++++|++||++ +.+.|.++.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4568999999999999999999999999999999999999999999999999999999999976 578899999999998
Q ss_pred CCccc
Q psy16454 85 VPRTE 89 (304)
Q Consensus 85 ~~~~~ 89 (304)
.++..
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 76543
No 332
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=2.2e-15 Score=123.89 Aligned_cols=80 Identities=14% Similarity=0.175 Sum_probs=73.7
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeeccccCCC
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKRAVP 86 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~~~~ 86 (304)
..++|||+|||+++|+++|+++|++||+|.+|+|+.+. +++++|||||+|+++++|++|++..++.+.++.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 35899999999999999999999999999999999985 58899999999999999999999888899999999987764
Q ss_pred c
Q psy16454 87 R 87 (304)
Q Consensus 87 ~ 87 (304)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 333
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.2e-15 Score=107.06 Aligned_cols=80 Identities=20% Similarity=0.389 Sum_probs=69.8
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecc
Q psy16454 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEP 81 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~ 81 (304)
+.+.+.++|||+|| ++|+++|+++|++||+|.+|.|. ++++||||+|.+.++|++|++. +...+.++.|.|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567899999996 99999999999999999999984 4678999999999999999976 577899999999
Q ss_pred ccCCCcccc
Q psy16454 82 KRAVPRTEI 90 (304)
Q Consensus 82 ~~~~~~~~~ 90 (304)
.++.++...
T Consensus 82 ~~a~~~~~~ 90 (97)
T 1x5p_A 82 NIARKQPML 90 (97)
T ss_dssp ECCSSCCCC
T ss_pred EECCCCCCC
Confidence 998876543
No 334
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=4.4e-15 Score=118.52 Aligned_cols=82 Identities=26% Similarity=0.457 Sum_probs=76.0
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH-hCCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA-ARPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~-~~~~~~~g~~i~~~ 82 (304)
.+.+.++|||+|||+++|+++|+++|++||.|.++.++.++.++.++++|||+|.++++|++|++ ++...+.++.|.+.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999998 46888999999998
Q ss_pred cCC
Q psy16454 83 RAV 85 (304)
Q Consensus 83 ~~~ 85 (304)
++.
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 875
No 335
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.60 E-value=5e-15 Score=123.54 Aligned_cols=85 Identities=25% Similarity=0.500 Sum_probs=78.2
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccccC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKRA 84 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~~ 84 (304)
...++|||+|||+++|+++|+++|++||.|++|+++.++.++++++||||+|.+.++|++|++. +...+.++.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4568999999999999999999999999999999999999999999999999999999999995 688899999999998
Q ss_pred CCcccc
Q psy16454 85 VPRTEI 90 (304)
Q Consensus 85 ~~~~~~ 90 (304)
.++...
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 876443
No 336
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=112.06 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=61.8
Q ss_pred CCCCccCeEEE--cCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCc-----
Q psy16454 3 KEPEHLRKLFI--GGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTI----- 74 (304)
Q Consensus 3 ~~~~~~~~v~V--~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~----- 74 (304)
..++++++||| +|||+++|+++|+++|++||+|.+|.|+. .|+||||+|+++++|++|++.+ .+.+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34567889999 77999999999999999999999998764 3689999999999999999875 4444
Q ss_pred CCeeeccccCC
Q psy16454 75 DSKVVEPKRAV 85 (304)
Q Consensus 75 ~g~~i~~~~~~ 85 (304)
.++.+.+.++.
T Consensus 94 ~g~~l~v~~a~ 104 (114)
T 2cq2_A 94 QKITLYLNFVE 104 (114)
T ss_dssp CEEECEEEEES
T ss_pred CCcEEEEEecc
Confidence 34455544433
No 337
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.59 E-value=8.3e-15 Score=115.78 Aligned_cols=81 Identities=11% Similarity=0.216 Sum_probs=69.7
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCC--eeec
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDS--KVVE 80 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g--~~i~ 80 (304)
.+....+|||+|||+++|+++|+++|++||+|++|+|+.+. +++||||+|++.++|++|++.+ ...|.+ +.|.
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 34566779999999999999999999999999999997542 5789999999999999999975 667755 8899
Q ss_pred cccCCCcc
Q psy16454 81 PKRAVPRT 88 (304)
Q Consensus 81 ~~~~~~~~ 88 (304)
|.+++++.
T Consensus 118 V~~Ak~~~ 125 (164)
T 1sjr_A 118 IDFSKLTS 125 (164)
T ss_dssp EEECSSSS
T ss_pred EEEecCCc
Confidence 98888764
No 338
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.58 E-value=9.8e-15 Score=107.79 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=71.7
Q ss_pred CCcceEEEcCCCC-----CCCHHHHHHHHhcCCceeEEEEeeeCCC-CCccceEEEEeCChhHHHHHHHh-CCcccCCee
Q psy16454 97 ATVKKLFVGSLRD-----DITEEDLKEYFGQFGEVTSVALVTEKET-GKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKK 169 (304)
Q Consensus 97 ~~~~~l~v~~l~~-----~~~~~~l~~~F~~~G~v~~v~i~~~~~~-~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~ 169 (304)
.++++|+|.||.. +.++++|+++|++||.|.+|.|+.++.+ ++++||+||+|+++++|++|++. ++..+++++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567999999963 2378999999999999999999988654 68899999999999999999976 999999999
Q ss_pred EEEeeccch
Q psy16454 170 VDVKKALSK 178 (304)
Q Consensus 170 i~v~~~~~~ 178 (304)
|.|.++...
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999999764
No 339
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.7e-15 Score=112.45 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=67.1
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCC----HHH----HHHHHH--h-CCCC
Q psy16454 9 RKLFIGGL----DYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSS----AHM----VDDAQA--A-RPHT 73 (304)
Q Consensus 9 ~~v~V~nL----p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~----~e~----a~~al~--~-~~~~ 73 (304)
++|||+|| |+++++++|+++|++||+|.+|.++.|+.|++++||+||+|.+ +++ |.+|+. . +...
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 333 677766 3 5778
Q ss_pred cCCeeeccccCC
Q psy16454 74 IDSKVVEPKRAV 85 (304)
Q Consensus 74 ~~g~~i~~~~~~ 85 (304)
|+++.+.|....
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 899999887644
No 340
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6e-15 Score=104.58 Aligned_cols=75 Identities=20% Similarity=0.308 Sum_probs=65.0
Q ss_pred cce-EEEcCCCCCCCHHH----HHHHHhcC-CceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEE
Q psy16454 99 VKK-LFVGSLRDDITEED----LKEYFGQF-GEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVD 171 (304)
Q Consensus 99 ~~~-l~v~~l~~~~~~~~----l~~~F~~~-G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~ 171 (304)
..+ |||.|||+++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|++. ++..+.+++|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 344 99999999999988 55899999 599988 22 8999999999999999976 99999999999
Q ss_pred EeeccchHHHhh
Q psy16454 172 VKKALSKEEMAK 183 (304)
Q Consensus 172 v~~~~~~~~~~~ 183 (304)
|.++..+.+.-.
T Consensus 78 v~~A~~~sd~~~ 89 (96)
T 2diu_A 78 VSFTPKNRELCE 89 (96)
T ss_dssp EESSCCSCCCCC
T ss_pred EEecCCCcceeE
Confidence 999988765433
No 341
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=5.6e-16 Score=121.31 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=71.1
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEE--------EEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcC
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDV--------VVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTID 75 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v--------~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~ 75 (304)
..++++|||+|||+++|+++|+++|++||.|..| .+. .++++++||||+|.+.++|++|++. +...+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4578899999999999999999999999998764 333 3678999999999999999999995 678899
Q ss_pred CeeeccccCCCccc
Q psy16454 76 SKVVEPKRAVPRTE 89 (304)
Q Consensus 76 g~~i~~~~~~~~~~ 89 (304)
++.|.|.++.+...
T Consensus 119 g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 119 GKPMVVQFARSARP 132 (143)
T ss_dssp TEECEEEECCCSCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999876543
No 342
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.58 E-value=4.1e-15 Score=112.88 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=68.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEee
Q psy16454 96 GATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKK 174 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 174 (304)
..+.++|||.|| ++|+++|+++|++||.|.+|.|. ++++||||+|++.++|++||+. +...+.+++|.|++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345689999995 69999999999999999999985 4678999999999999999966 99999999999999
Q ss_pred ccchHH
Q psy16454 175 ALSKEE 180 (304)
Q Consensus 175 ~~~~~~ 180 (304)
+.++..
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 987654
No 343
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.57 E-value=7.9e-15 Score=120.68 Aligned_cols=83 Identities=27% Similarity=0.429 Sum_probs=77.7
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccccC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKRA 84 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~~ 84 (304)
...++|||+|||+++|+++|+++|++||+|.+|.++.++.++.+++||||+|.++++|++|++. +...+.++.|.+.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5679999999999999999999999999999999999988999999999999999999999995 688899999999998
Q ss_pred CCcc
Q psy16454 85 VPRT 88 (304)
Q Consensus 85 ~~~~ 88 (304)
.++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 344
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.57 E-value=7.8e-15 Score=117.96 Aligned_cols=80 Identities=28% Similarity=0.431 Sum_probs=74.3
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
+...++|||+|||+++|+++|+++|++||+|.+|.++.++.+++++++|||+|.++++|++|++. +...+.++.|.+.+
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34578999999999999999999999999999999999988999999999999999999999985 68889999999887
Q ss_pred C
Q psy16454 84 A 84 (304)
Q Consensus 84 ~ 84 (304)
+
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 5
No 345
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.57 E-value=1.1e-14 Score=122.54 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=76.5
Q ss_pred HHHhCCCCcCCeeeccccCCCccccCCCCCCCCcceEEEcCCCCCC---------CHHHHHHHHhcCCceeEEEEeeeCC
Q psy16454 66 AQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDI---------TEEDLKEYFGQFGEVTSVALVTEKE 136 (304)
Q Consensus 66 al~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~---------~~~~l~~~F~~~G~v~~v~i~~~~~ 136 (304)
++......+.++............. .......++|||+||++.+ ++++|+++|++||+|++|.|+.
T Consensus 103 ~~~~~~~D~fGr~k~~~~~d~~~g~--gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--- 177 (240)
T 3u1l_A 103 ALRTEVLDCFGREKFADYREDMGGI--GSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--- 177 (240)
T ss_dssp HHHCSSBCTTSSBCGGGTC-----------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---
T ss_pred cccccCcccccchhcccchhcccCc--CccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---
Confidence 3333334444555444333322211 1224567899999999998 7999999999999999999984
Q ss_pred CCCccceEEEEeCChhHHHHHHHh-CCccc------------CCeeEEEeeccchHHH
Q psy16454 137 TGKKRGFGFVEYNDYDPVDKACLK-GTHLV------------KGKKVDVKKALSKEEM 181 (304)
Q Consensus 137 ~~~~~G~afV~f~~~~~a~~A~~~-~~~~~------------~g~~i~v~~~~~~~~~ 181 (304)
+++||||+|.+.++|+.|++. ++..| .++.|.|+++...+..
T Consensus 178 ---~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 178 ---SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp ---GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred ---CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 478999999999999999976 88888 8999999999876543
No 346
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.56 E-value=1.7e-14 Score=116.13 Aligned_cols=81 Identities=25% Similarity=0.398 Sum_probs=70.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCC--CccceEEEEeCChhHHHHHHHh-CCcccC---CeeEE
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETG--KKRGFGFVEYNDYDPVDKACLK-GTHLVK---GKKVD 171 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~--~~~G~afV~f~~~~~a~~A~~~-~~~~~~---g~~i~ 171 (304)
+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++ ++++||||+|.++++|++|++. +...+. .+++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45799999999999999999999999999999999998876 8999999999999999999975 665554 56777
Q ss_pred Eeeccch
Q psy16454 172 VKKALSK 178 (304)
Q Consensus 172 v~~~~~~ 178 (304)
+.++.+.
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 7766544
No 347
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.54 E-value=1.8e-14 Score=119.58 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=69.3
Q ss_pred CcceEEEcCCC-CCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeec
Q psy16454 98 TVKKLFVGSLR-DDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKA 175 (304)
Q Consensus 98 ~~~~l~v~~l~-~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~ 175 (304)
+..+|||+||| +.+|+++|+++|++||.|.+|+|+.+ .+|||||+|+++++|++||+. ++..+.+++|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45799999999 89999999999999999999999864 368999999999999999975 999999999999998
Q ss_pred cch
Q psy16454 176 LSK 178 (304)
Q Consensus 176 ~~~ 178 (304)
..+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 644
No 348
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.53 E-value=3.2e-14 Score=108.30 Aligned_cols=80 Identities=13% Similarity=0.275 Sum_probs=67.9
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccE-EEEEeCCHHHHHHHHHhC-CCCcCC--eee
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGF-GFITYSSAHMVDDAQAAR-PHTIDS--KVV 79 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~-aFV~f~~~e~a~~al~~~-~~~~~g--~~i 79 (304)
.+.....|||+||++.+|+++|+++|++||+|.+|+|+.+ ++++ |||+|++.++|++|++.+ ...|.+ +.+
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 3456677889999999999999999999999999998864 3577 999999999999999875 677777 788
Q ss_pred ccccCCCcc
Q psy16454 80 EPKRAVPRT 88 (304)
Q Consensus 80 ~~~~~~~~~ 88 (304)
.+.++++..
T Consensus 99 rI~~ak~~~ 107 (130)
T 3zzy_A 99 RIDFSKLTS 107 (130)
T ss_dssp EEEECSCSS
T ss_pred EEEecCCCc
Confidence 888887654
No 349
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.53 E-value=2.5e-14 Score=108.50 Aligned_cols=78 Identities=21% Similarity=0.375 Sum_probs=68.9
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~ 82 (304)
.+.+.++|||+|| ++|+++|+++|++||+|.+|.|. ++++||||+|.+.++|++|++. +...+.++.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567899999996 79999999999999999999986 4678999999999999999965 6888999999999
Q ss_pred cCCCccc
Q psy16454 83 RAVPRTE 89 (304)
Q Consensus 83 ~~~~~~~ 89 (304)
++.++..
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9886643
No 350
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=5.4e-14 Score=99.66 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=64.6
Q ss_pred ccCe-EEEcCCCCCCCHHH----HHHHhhhCC-ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeee
Q psy16454 7 HLRK-LFIGGLDYRTSSET----LKSHFEAWG-DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVV 79 (304)
Q Consensus 7 ~~~~-v~V~nLp~~~t~~~----l~~~F~~~G-~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i 79 (304)
++.+ |||.|||+++++++ |+++|++|| +|.+| ++ |+|||+|.+.++|++|++. +...+.++.+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4555 99999999999988 558999994 99988 22 8999999999999999975 6889999999
Q ss_pred ccccCCCccccCC
Q psy16454 80 EPKRAVPRTEINR 92 (304)
Q Consensus 80 ~~~~~~~~~~~~~ 92 (304)
.+.++..+.+...
T Consensus 77 ~v~~A~~~sd~~~ 89 (96)
T 2diu_A 77 IVSFTPKNRELCE 89 (96)
T ss_dssp EEESSCCSCCCCC
T ss_pred EEEecCCCcceeE
Confidence 9999987765433
No 351
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.52 E-value=5.1e-14 Score=106.69 Aligned_cols=76 Identities=21% Similarity=0.268 Sum_probs=64.2
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccE-EEEEeCCHHHHHHHHHh-CCCCcCC--eeeccc
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGF-GFITYSSAHMVDDAQAA-RPHTIDS--KVVEPK 82 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~-aFV~f~~~e~a~~al~~-~~~~~~g--~~i~~~ 82 (304)
....|||+|||+.+|+++|+++|++||.|.+|+|+.. .+| |||+|++.++|++|++. +...|.+ +.|.|.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3445789999999999999999999999999999762 276 99999999999999986 4777776 578888
Q ss_pred cCCCcc
Q psy16454 83 RAVPRT 88 (304)
Q Consensus 83 ~~~~~~ 88 (304)
++.++.
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 877654
No 352
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.51 E-value=6.3e-14 Score=103.43 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=71.3
Q ss_pred CCccCeEEEcCCCC-----CCCHHHHHHHhhhCCceeEEEEEeCCCC-CCcccEEEEEeCCHHHHHHHHHh-CCCCcCCe
Q psy16454 5 PEHLRKLFIGGLDY-----RTSSETLKSHFEAWGDVVDVVVMKDPQT-KKSRGFGFITYSSAHMVDDAQAA-RPHTIDSK 77 (304)
Q Consensus 5 ~~~~~~v~V~nLp~-----~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~ 77 (304)
+.++++|+|.||.. +.++++|+++|++||+|.+|.|+.++.+ ++++|++||+|+++++|++|++. +...+.++
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 56789999999962 3489999999999999999999998764 68999999999999999999976 57889999
Q ss_pred eeccccCCC
Q psy16454 78 VVEPKRAVP 86 (304)
Q Consensus 78 ~i~~~~~~~ 86 (304)
.|.+.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999988764
No 353
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.50 E-value=7.9e-14 Score=121.29 Aligned_cols=81 Identities=20% Similarity=0.374 Sum_probs=72.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeE
Q psy16454 96 GATVKKLFVGSLRDDITEEDLK----EYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKV 170 (304)
Q Consensus 96 ~~~~~~l~v~~l~~~~~~~~l~----~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i 170 (304)
..+.++|||+|||+++|+++|+ ++|++||.|.+|.|++ ++++++||||+|.+.++|++||+. +...|.++.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3557899999999999999977 8999999999999875 678999999999999999999965 8999999999
Q ss_pred EEeeccchH
Q psy16454 171 DVKKALSKE 179 (304)
Q Consensus 171 ~v~~~~~~~ 179 (304)
+|.++..+.
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999986654
No 354
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.2e-14 Score=104.54 Aligned_cols=82 Identities=13% Similarity=0.268 Sum_probs=68.7
Q ss_pred CCCCcceEEEcCCCCCCC-----------HHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CC
Q psy16454 95 AGATVKKLFVGSLRDDIT-----------EEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GT 162 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~-----------~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~ 162 (304)
...++++|+|.||....+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|++|++. ++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 345678999999954432 6899999999999999966 443 3799999999999999999966 88
Q ss_pred cccCCeeEEEeeccchHH
Q psy16454 163 HLVKGKKVDVKKALSKEE 180 (304)
Q Consensus 163 ~~~~g~~i~v~~~~~~~~ 180 (304)
..+++++|.|+++.++..
T Consensus 87 ~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp CEETTEECEEEECCSCCC
T ss_pred CEECCcEEEEEEeCCCCC
Confidence 999999999999877643
No 355
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.48 E-value=6.8e-14 Score=118.13 Aligned_cols=78 Identities=24% Similarity=0.371 Sum_probs=71.0
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHH-hCCcccCCeeEEEe
Q psy16454 96 GATVKKLFVGSLRD-DITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACL-KGTHLVKGKKVDVK 173 (304)
Q Consensus 96 ~~~~~~l~v~~l~~-~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 173 (304)
..+.++|||.|||+ ++++++|+++|++||.|.+|.|+.++ ++||||+|.++++|++|++ .+...+.+++|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34568999999999 99999999999999999999998764 6899999999999999997 59999999999999
Q ss_pred eccch
Q psy16454 174 KALSK 178 (304)
Q Consensus 174 ~~~~~ 178 (304)
++...
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 98754
No 356
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.6e-13 Score=98.95 Aligned_cols=65 Identities=17% Similarity=0.248 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEEeeccchH
Q psy16454 109 DDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKE 179 (304)
Q Consensus 109 ~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~~~~~~ 179 (304)
..+++++|+++|++||.|++|.|+ .+++|||||+|+++++|++||+. ...+.+++|.|+++.++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEccCCC
Confidence 568999999999999999999997 36889999999999999999988 444789999999987664
No 357
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.47 E-value=1.4e-13 Score=101.57 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=70.1
Q ss_pred CCcceEEEcCC--CCCCC--------HHHHHHHHhcCCceeEEEEeeeCCC--CCccceEEEEeCChhHHHHHHHh-CCc
Q psy16454 97 ATVKKLFVGSL--RDDIT--------EEDLKEYFGQFGEVTSVALVTEKET--GKKRGFGFVEYNDYDPVDKACLK-GTH 163 (304)
Q Consensus 97 ~~~~~l~v~~l--~~~~~--------~~~l~~~F~~~G~v~~v~i~~~~~~--~~~~G~afV~f~~~~~a~~A~~~-~~~ 163 (304)
.+++.|.|.|+ |..+. +++|+++|++||.|++|.|++++.+ .+++|++||+|+++++|++|++. ++.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678899998 33333 4789999999999999999988765 46899999999999999999976 999
Q ss_pred ccCCeeEEEeeccchH
Q psy16454 164 LVKGKKVDVKKALSKE 179 (304)
Q Consensus 164 ~~~g~~i~v~~~~~~~ 179 (304)
.+++++|.|.+.....
T Consensus 83 ~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 83 KFANRVVVTKYCDPDS 98 (105)
T ss_dssp EETTEECEEEEECHHH
T ss_pred EeCCCEEEEEEeCHHH
Confidence 9999999999876543
No 358
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.47 E-value=9.7e-14 Score=111.92 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=69.7
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeeecccc
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVVEPKR 83 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i~~~~ 83 (304)
+...++|||+|||+++|+++|+++|++|+.|..+ ..++.+++||||+|.+.++|++|++. +...+.++.|.+.+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 4567899999999999999999999999987665 46788999999999999999999995 67889999999998
Q ss_pred CCCc
Q psy16454 84 AVPR 87 (304)
Q Consensus 84 ~~~~ 87 (304)
+.++
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8765
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.46 E-value=7.2e-14 Score=117.61 Aligned_cols=78 Identities=19% Similarity=0.321 Sum_probs=67.0
Q ss_pred CCccCeEEEcCCCCCC---------CHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCc
Q psy16454 5 PEHLRKLFIGGLDYRT---------SSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTI 74 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~---------t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~ 74 (304)
....++|||+|||.++ |+++|+++|++||+|++|+|+. +|+||||+|.+.++|++|++++ ...|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568999999999998 7999999999999999999985 4789999999999999999864 5666
Q ss_pred ------------CCeeeccccCCCcc
Q psy16454 75 ------------DSKVVEPKRAVPRT 88 (304)
Q Consensus 75 ------------~g~~i~~~~~~~~~ 88 (304)
.++.|.|+++...+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 68889999987654
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=6.3e-13 Score=99.35 Aligned_cols=84 Identities=12% Similarity=0.168 Sum_probs=69.7
Q ss_pred CCCCccCeEEEcCCCCCC-----------CHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-
Q psy16454 3 KEPEHLRKLFIGGLDYRT-----------SSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR- 70 (304)
Q Consensus 3 ~~~~~~~~v~V~nLp~~~-----------t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~- 70 (304)
..+.++++|+|.||.... ++++|+++|++||+|.+|.| .++ .++|||||+|.++++|++|++.+
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 456789999999994332 26899999999999999966 443 37999999999999999999764
Q ss_pred CCCcCCeeeccccCCCcccc
Q psy16454 71 PHTIDSKVVEPKRAVPRTEI 90 (304)
Q Consensus 71 ~~~~~g~~i~~~~~~~~~~~ 90 (304)
...+.++.|.+.++.++...
T Consensus 86 g~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TCEETTEECEEEECCSCCCS
T ss_pred CCEECCcEEEEEEeCCCCCc
Confidence 67899999999998776543
No 361
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.43 E-value=5.1e-13 Score=100.47 Aligned_cols=80 Identities=24% Similarity=0.257 Sum_probs=69.0
Q ss_pred CcceEEEcCCCC--C---CCHHHHHHHHhcCCceeEEEEeeeCC----CCCccceEEEEeCChhHHHHHHHh-CCcccCC
Q psy16454 98 TVKKLFVGSLRD--D---ITEEDLKEYFGQFGEVTSVALVTEKE----TGKKRGFGFVEYNDYDPVDKACLK-GTHLVKG 167 (304)
Q Consensus 98 ~~~~l~v~~l~~--~---~~~~~l~~~F~~~G~v~~v~i~~~~~----~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g 167 (304)
++++|+|.|+-. + -.+++|+++|++||+|.+|.|++++. +++++||+||+|+++++|++|++. ++..+++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457899999842 2 23689999999999999999999865 457889999999999999999976 9999999
Q ss_pred eeEEEeeccc
Q psy16454 168 KKVDVKKALS 177 (304)
Q Consensus 168 ~~i~v~~~~~ 177 (304)
++|.|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998755
No 362
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.43 E-value=1.7e-13 Score=112.85 Aligned_cols=76 Identities=22% Similarity=0.350 Sum_probs=69.6
Q ss_pred cceEEEcCCCC-CCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHH-hCCcccCCeeEEEeecc
Q psy16454 99 VKKLFVGSLRD-DITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACL-KGTHLVKGKKVDVKKAL 176 (304)
Q Consensus 99 ~~~l~v~~l~~-~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~~~ 176 (304)
.++|||.|||+ ++++++|+++|++||.|.+|.|+.++ ++||||+|.++++|++|++ .+...+.+++|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 47999999999 99999999999999999999998764 6899999999999999997 59999999999999987
Q ss_pred chH
Q psy16454 177 SKE 179 (304)
Q Consensus 177 ~~~ 179 (304)
.+.
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 363
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.41 E-value=8.2e-14 Score=102.68 Aligned_cols=71 Identities=15% Similarity=0.398 Sum_probs=61.7
Q ss_pred EcCCCCCCCHHHHHHHH------------hcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeE
Q psy16454 104 VGSLRDDITEEDLKEYF------------GQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKV 170 (304)
Q Consensus 104 v~~l~~~~~~~~l~~~F------------~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i 170 (304)
+.+||+.+++++|+++| ++||.|++|.|+++.. ++++|||||+|+++++|++|++. ++..+++++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 55677778887777666 9999999999998764 68999999999999999999976 9999999999
Q ss_pred EEeec
Q psy16454 171 DVKKA 175 (304)
Q Consensus 171 ~v~~~ 175 (304)
.|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 364
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.41 E-value=7.3e-13 Score=114.03 Aligned_cols=77 Identities=31% Similarity=0.523 Sum_probs=69.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEe
Q psy16454 95 AGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVK 173 (304)
Q Consensus 95 ~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 173 (304)
...+.++|||+|||+++|+++|+++|++||.|..|.|.+ +++||||+|.+.++|++|++. +...+.++.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 345667999999999999999999999999999999864 468999999999999999975 9999999999998
Q ss_pred eccc
Q psy16454 174 KALS 177 (304)
Q Consensus 174 ~~~~ 177 (304)
++.+
T Consensus 92 ~a~~ 95 (261)
T 3sde_A 92 FATH 95 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 8753
No 365
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.4e-12 Score=93.01 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=64.1
Q ss_pred CccCeEEEcCCC-------CCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCee
Q psy16454 6 EHLRKLFIGGLD-------YRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKV 78 (304)
Q Consensus 6 ~~~~~v~V~nLp-------~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~ 78 (304)
...++|.|.-.+ .++|+++|+++|++||+|.+|.|+ ++++|||||+|+++++|++|++.. ..+.++.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~ 81 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE-VGLVDNP 81 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC-CBCSSSB
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc-CCCCCCe
Confidence 346677776554 458999999999999999999998 367899999999999999999984 5567888
Q ss_pred eccccCCCcc
Q psy16454 79 VEPKRAVPRT 88 (304)
Q Consensus 79 i~~~~~~~~~ 88 (304)
|.|.++.++.
T Consensus 82 l~V~~a~~~~ 91 (100)
T 2d9o_A 82 LKISWLEGQP 91 (100)
T ss_dssp CEEECSSCCC
T ss_pred EEEEEccCCC
Confidence 9998877654
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.36 E-value=1.6e-12 Score=115.18 Aligned_cols=112 Identities=12% Similarity=0.087 Sum_probs=75.1
Q ss_pred CCCCccCeEEEcC--CCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCc---CC
Q psy16454 3 KEPEHLRKLFIGG--LDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTI---DS 76 (304)
Q Consensus 3 ~~~~~~~~v~V~n--Lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~---~g 76 (304)
-.++++++|||+| |++++|+++|+++|++||+|.+|.+.. +|+||||+|++.++|++|++.+ ...+ .+
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3567899999999 578999999999999999999987753 5789999999999999999986 3333 12
Q ss_pred e--eeccccCCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcC
Q psy16454 77 K--VVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQF 123 (304)
Q Consensus 77 ~--~i~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~ 123 (304)
+ .+.+.+....+.........+.--.+ +|..+++++-..+++..
T Consensus 87 ~~~~ly~~~~~~~~~~~~~~~~lp~Gl~~---~p~fis~~Ee~~Ll~~i 132 (345)
T 3tht_A 87 QKITLYLNFVEKVQWKELRPQALPPGLMV---VEEIISSEEEKMLLESV 132 (345)
T ss_dssp CEEECEEEECSSEEEEEEECCSCCTTEEE---ETTCSCHHHHHHHHTTC
T ss_pred CceEEEEEEeecccccccccccCCCceEE---EcCcCCHHHHHHHHHhc
Confidence 3 34444432221111111111112222 35567777766777654
No 367
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.31 E-value=2.8e-12 Score=94.56 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=68.1
Q ss_pred CccCeEEEcCC--CCCCC--------HHHHHHHhhhCCceeEEEEEeCCCC--CCcccEEEEEeCCHHHHHHHHHh-CCC
Q psy16454 6 EHLRKLFIGGL--DYRTS--------SETLKSHFEAWGDVVDVVVMKDPQT--KKSRGFGFITYSSAHMVDDAQAA-RPH 72 (304)
Q Consensus 6 ~~~~~v~V~nL--p~~~t--------~~~l~~~F~~~G~v~~v~i~~~~~~--~~~kG~aFV~f~~~e~a~~al~~-~~~ 72 (304)
.+++.|.|.|+ |.++. +++|+++|++||+|++|+|++++.+ .+++|++||+|+++++|++|++. +..
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46889999998 44443 4799999999999999999988654 46899999999999999999976 578
Q ss_pred CcCCeeeccccCCC
Q psy16454 73 TIDSKVVEPKRAVP 86 (304)
Q Consensus 73 ~~~g~~i~~~~~~~ 86 (304)
.+.++.|.+.....
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 89999998877543
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.28 E-value=8.9e-12 Score=110.37 Aligned_cols=74 Identities=15% Similarity=0.307 Sum_probs=60.9
Q ss_pred CCCcceEEEcC--CCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCccc---CCe-
Q psy16454 96 GATVKKLFVGS--LRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLV---KGK- 168 (304)
Q Consensus 96 ~~~~~~l~v~~--l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~---~g~- 168 (304)
..++++|||+| |++.+||++|+++|++||+|++|.+.. .|+||||+|++.++|++||+. ++..+ .++
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45678999999 588999999999999999999987753 468999999999999999987 77665 234
Q ss_pred -eEEEeec
Q psy16454 169 -KVDVKKA 175 (304)
Q Consensus 169 -~i~v~~~ 175 (304)
.|.|.++
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 4555554
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.27 E-value=5.6e-12 Score=94.77 Aligned_cols=80 Identities=13% Similarity=0.100 Sum_probs=67.9
Q ss_pred CccCeEEEcCCC--CC---CCHHHHHHHhhhCCceeEEEEEeCCC----CCCcccEEEEEeCCHHHHHHHHHh-CCCCcC
Q psy16454 6 EHLRKLFIGGLD--YR---TSSETLKSHFEAWGDVVDVVVMKDPQ----TKKSRGFGFITYSSAHMVDDAQAA-RPHTID 75 (304)
Q Consensus 6 ~~~~~v~V~nLp--~~---~t~~~l~~~F~~~G~v~~v~i~~~~~----~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~ 75 (304)
.++++|+|.|+- .+ -.+++|++.|++||+|.+|+|++++. +.+++|++||+|+++++|++|++. +...+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 368999999993 22 34799999999999999999998754 457889999999999999999987 478899
Q ss_pred CeeeccccCC
Q psy16454 76 SKVVEPKRAV 85 (304)
Q Consensus 76 g~~i~~~~~~ 85 (304)
++.|.+.+..
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999887754
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.26 E-value=2.3e-11 Score=90.82 Aligned_cols=79 Identities=11% Similarity=0.104 Sum_probs=65.0
Q ss_pred CCcceEEEcCCCCCC----------CHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCccc
Q psy16454 97 ATVKKLFVGSLRDDI----------TEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLV 165 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~----------~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~ 165 (304)
.+++.|.|.|+=... .+++|+++|++||.|++|.|.++. ++||+||+|++.++|++|++. ++..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 356678888873321 246889999999999999997653 589999999999999999976 99999
Q ss_pred CCeeEEEeeccchH
Q psy16454 166 KGKKVDVKKALSKE 179 (304)
Q Consensus 166 ~g~~i~v~~~~~~~ 179 (304)
+++.|.|+++....
T Consensus 81 ~GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 81 AGKMITAAYVPLPT 94 (114)
T ss_dssp TTEECEEEEECHHH
T ss_pred CCEEEEEEEEcHHH
Confidence 99999999986543
No 371
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.25 E-value=2.6e-12 Score=94.53 Aligned_cols=71 Identities=14% Similarity=0.283 Sum_probs=59.0
Q ss_pred EcCCCCCCCHHHHHHHh------------hhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCCCcCCeee
Q psy16454 13 IGGLDYRTSSETLKSHF------------EAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPHTIDSKVV 79 (304)
Q Consensus 13 V~nLp~~~t~~~l~~~F------------~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~~~~g~~i 79 (304)
+.+||+++|+++|+++| ++||+|.+|.|++++. ++++|||||+|+++++|++|++. +...+.++.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45566667777777666 9999999999998754 68999999999999999999985 5788999998
Q ss_pred ccccC
Q psy16454 80 EPKRA 84 (304)
Q Consensus 80 ~~~~~ 84 (304)
.+.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 87654
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.4e-10 Score=86.72 Aligned_cols=78 Identities=19% Similarity=0.205 Sum_probs=66.9
Q ss_pred CCcceEEEcCCCCC-CCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCC-hhHHHHHHHh---CCcccCCeeEE
Q psy16454 97 ATVKKLFVGSLRDD-ITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYND-YDPVDKACLK---GTHLVKGKKVD 171 (304)
Q Consensus 97 ~~~~~l~v~~l~~~-~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~-~~~a~~A~~~---~~~~~~g~~i~ 171 (304)
.+...|+|.||++. +++++|+++|++||+|..|++..+.. .|||+|.+ +++|++|+++ ....|++..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 34568999999999 99999999999999999999988765 59999999 7899988876 46779999999
Q ss_pred EeeccchHH
Q psy16454 172 VKKALSKEE 180 (304)
Q Consensus 172 v~~~~~~~~ 180 (304)
++...-.++
T Consensus 90 ~evL~GeeE 98 (121)
T 1owx_A 90 WEVLEGEVE 98 (121)
T ss_dssp EEECCHHHH
T ss_pred EEECCCHHH
Confidence 877765544
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=4.3e-10 Score=84.10 Aligned_cols=70 Identities=17% Similarity=0.098 Sum_probs=58.6
Q ss_pred CccCeEEEcCCCCC-CCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCC-HHHHHHHHHhC---CCCcCCeeec
Q psy16454 6 EHLRKLFIGGLDYR-TSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSS-AHMVDDAQAAR---PHTIDSKVVE 80 (304)
Q Consensus 6 ~~~~~v~V~nLp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~-~e~a~~al~~~---~~~~~g~~i~ 80 (304)
...+.|||+||+++ +|+++|+++|++||+|..|.++.+.. .|||+|.+ +++|++|+... ...|.+..+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 46688999999999 99999999999999999999998765 59999999 78899888874 4455554444
Q ss_pred c
Q psy16454 81 P 81 (304)
Q Consensus 81 ~ 81 (304)
+
T Consensus 90 ~ 90 (121)
T 1owx_A 90 W 90 (121)
T ss_dssp E
T ss_pred E
Confidence 3
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.04 E-value=4.7e-10 Score=83.61 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=64.1
Q ss_pred CCCccCeEEEcCCC--CC--------CCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh-CCC
Q psy16454 4 EPEHLRKLFIGGLD--YR--------TSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA-RPH 72 (304)
Q Consensus 4 ~~~~~~~v~V~nLp--~~--------~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~-~~~ 72 (304)
.+.+++.|.|.|+= .+ ..+++|+++|++||.|++|.|.++. ++|++||+|++.++|++|++. +..
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45678899999883 22 1356889999999999999986642 589999999999999999976 578
Q ss_pred CcCCeeeccccCC
Q psy16454 73 TIDSKVVEPKRAV 85 (304)
Q Consensus 73 ~~~g~~i~~~~~~ 85 (304)
.+.++.|.+.+..
T Consensus 79 ~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 79 WFAGKMITAAYVP 91 (114)
T ss_dssp EETTEECEEEEEC
T ss_pred EECCEEEEEEEEc
Confidence 8999999988765
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=7.1e-10 Score=77.82 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=58.7
Q ss_pred ceEEEcCCCC----CCCH----HHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEE
Q psy16454 100 KKLFVGSLRD----DITE----EDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVD 171 (304)
Q Consensus 100 ~~l~v~~l~~----~~~~----~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~ 171 (304)
-+|+|.-++. +.-+ .+|.+.|++||+|..++|+.++ +||+|.+.++|.+||+++...+.++.|+
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRTIT 79 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeEEE
Confidence 4666666652 2222 5789999999999999999864 8999999999999999999999999999
Q ss_pred Eeeccc
Q psy16454 172 VKKALS 177 (304)
Q Consensus 172 v~~~~~ 177 (304)
|+.+.+
T Consensus 80 V~lkt~ 85 (91)
T 2dnr_A 80 IALKSP 85 (91)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 998865
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=3.1e-09 Score=74.92 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=58.9
Q ss_pred ceEEEcCCCCC------CCH---HHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeE
Q psy16454 100 KKLFVGSLRDD------ITE---EDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKV 170 (304)
Q Consensus 100 ~~l~v~~l~~~------~~~---~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i 170 (304)
-+|+|.-++.. .++ .+|.+.|++||+|..++|+.++ +||+|.+.++|.+||+++...++++.|
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr~L 87 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGRAV 87 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTEEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCeEE
Confidence 57888877632 232 4688999999999999999874 999999999999999999999999999
Q ss_pred EEeecc
Q psy16454 171 DVKKAL 176 (304)
Q Consensus 171 ~v~~~~ 176 (304)
+|++..
T Consensus 88 ~V~~k~ 93 (95)
T 1ufw_A 88 KISGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEeccC
Confidence 998753
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.82 E-value=3e-08 Score=82.86 Aligned_cols=67 Identities=25% Similarity=0.246 Sum_probs=59.6
Q ss_pred CCHHHHHHHHhcCCceeEEEEeeeCC----CCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeeccc
Q psy16454 111 ITEEDLKEYFGQFGEVTSVALVTEKE----TGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKALS 177 (304)
Q Consensus 111 ~~~~~l~~~F~~~G~v~~v~i~~~~~----~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~~ 177 (304)
-.+++|++.|++||.|.+|.|+++.. +++++|++||+|.+.++|++|++. ++..++||+|.+.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 35689999999999999999986654 458999999999999999999976 99999999999998754
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=7.7e-09 Score=72.56 Aligned_cols=72 Identities=10% Similarity=0.174 Sum_probs=59.9
Q ss_pred ccCeEEEcCCCC----CCCH----HHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCee
Q psy16454 7 HLRKLFIGGLDY----RTSS----ETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKV 78 (304)
Q Consensus 7 ~~~~v~V~nLp~----~~t~----~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~ 78 (304)
+.-||+|.-+|. +..+ .+|.+.|.+||+|..++++.++ +||+|.+.++|.+|++++...+.++.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 445677766652 2333 6788999999999999999873 89999999999999998899999999
Q ss_pred eccccCCC
Q psy16454 79 VEPKRAVP 86 (304)
Q Consensus 79 i~~~~~~~ 86 (304)
+.|..+.+
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99988764
No 379
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=8.8e-08 Score=68.33 Aligned_cols=89 Identities=19% Similarity=0.223 Sum_probs=74.6
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhC-----CceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeec
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAW-----GDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVE 80 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~-----G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~ 80 (304)
...++|.|.|||.+++++.|+-+|++- |+|.++.... .-|+|+|.+.+.|++.|+...|.+++..+.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 456889999999999999999999983 4688888765 279999999999999999888999998888
Q ss_pred cccCCCccccCCCCCCCCcceEEEcCCCCCCC
Q psy16454 81 PKRAVPRTEINRPEAGATVKKLFVGSLRDDIT 112 (304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~ 112 (304)
|....++ +..+|++.+|+..|+
T Consensus 78 V~P~~~~----------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPR----------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCC----------CCCCCCCCSCCCCCC
T ss_pred EEcCCCC----------CcceEeeecCCCCCC
Confidence 8765443 346889999998875
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=1.9e-08 Score=70.86 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=61.1
Q ss_pred CccCeEEEcCCCCC-----CCH----HHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCC
Q psy16454 6 EHLRKLFIGGLDYR-----TSS----ETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDS 76 (304)
Q Consensus 6 ~~~~~v~V~nLp~~-----~t~----~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g 76 (304)
.+.-||+|.-++.+ ..+ .+|.+.|++||.|..++++.++ +||+|.+.++|.+|++++...+.+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 45568888877643 222 5688999999999999999874 999999999999999988999999
Q ss_pred eeeccccCCC
Q psy16454 77 KVVEPKRAVP 86 (304)
Q Consensus 77 ~~i~~~~~~~ 86 (304)
+.+.|..+.+
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999987653
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.49 E-value=3.3e-07 Score=76.50 Aligned_cols=79 Identities=13% Similarity=0.081 Sum_probs=62.7
Q ss_pred ccCeEEEcCCC-----CCCCHHHHHHHhhhCCceeEEEEEeCCC----CCCcccEEEEEeCCHHHHHHHHHhC-CCCcCC
Q psy16454 7 HLRKLFIGGLD-----YRTSSETLKSHFEAWGDVVDVVVMKDPQ----TKKSRGFGFITYSSAHMVDDAQAAR-PHTIDS 76 (304)
Q Consensus 7 ~~~~v~V~nLp-----~~~t~~~l~~~F~~~G~v~~v~i~~~~~----~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g 76 (304)
.++.|.+.++- .+-.+++|++.|++||.|.++.|+++.. +++++|++||+|.+.++|++|++.+ ...+.+
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 44555555542 2346789999999999999999985543 4589999999999999999999874 788899
Q ss_pred eeeccccCC
Q psy16454 77 KVVEPKRAV 85 (304)
Q Consensus 77 ~~i~~~~~~ 85 (304)
+.|.+....
T Consensus 203 r~i~~~~~~ 211 (222)
T 3dxb_A 203 RKVVAEVYD 211 (222)
T ss_dssp SBCEEEECC
T ss_pred eEEEEEEcC
Confidence 998887654
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.45 E-value=1.1e-06 Score=63.26 Aligned_cols=73 Identities=11% Similarity=0.147 Sum_probs=64.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcC-----CceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEE
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQF-----GEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVD 171 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~-----G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~ 171 (304)
..++|-|-+||..++++.|+.+++++ +.|+.|.+..|-. =|+|+|+|..+|.+|... ++.+|++++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 34789999999999999999999999 9999999987753 599999999999998755 99999999999
Q ss_pred Eeecc
Q psy16454 172 VKKAL 176 (304)
Q Consensus 172 v~~~~ 176 (304)
+-...
T Consensus 94 ~gTv~ 98 (117)
T 2l9w_A 94 SGTIN 98 (117)
T ss_dssp EECHH
T ss_pred ecCHH
Confidence 86543
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=3.9e-06 Score=59.82 Aligned_cols=73 Identities=18% Similarity=0.237 Sum_probs=62.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhc-----CCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEE
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQ-----FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDV 172 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~-----~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 172 (304)
..++|.|.|||..++++.|+-+|+. -|+|..+.... .-|+|+|.+.+.|++.|++..|.|++.+|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 4468999999999999999999987 25788887753 2599999999999999988899999999999
Q ss_pred eeccch
Q psy16454 173 KKALSK 178 (304)
Q Consensus 173 ~~~~~~ 178 (304)
....++
T Consensus 79 ~P~~~~ 84 (104)
T 2dhx_A 79 RPAPPR 84 (104)
T ss_dssp EECCCC
T ss_pred EcCCCC
Confidence 765444
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.27 E-value=4e-06 Score=60.30 Aligned_cols=71 Identities=11% Similarity=0.144 Sum_probs=61.7
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhC-----CceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHH-HhCCCCcCCee
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAW-----GDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQ-AARPHTIDSKV 78 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~-----G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al-~~~~~~~~g~~ 78 (304)
.+..++|-|=+||..++++.|+.+++++ +.+..|.+.+|-. =|+|+|++..+|-+|. +....+|.++.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3568899999999999999999999999 9999999998753 6999999999888775 76788888877
Q ss_pred ecc
Q psy16454 79 VEP 81 (304)
Q Consensus 79 i~~ 81 (304)
+.+
T Consensus 92 Lr~ 94 (117)
T 2l9w_A 92 IRS 94 (117)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.68 E-value=0.00016 Score=51.81 Aligned_cols=76 Identities=14% Similarity=0.007 Sum_probs=61.1
Q ss_pred ccCeEEEcCCCCCC-C----HHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC-CCCcCCeeec
Q psy16454 7 HLRKLFIGGLDYRT-S----SETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR-PHTIDSKVVE 80 (304)
Q Consensus 7 ~~~~v~V~nLp~~~-t----~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~-~~~~~g~~i~ 80 (304)
-.++|+|.||+.++ + +++++++|.+|.++.....+++= .-.-|.|.++++|.+|...+ ...+.++.+.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 45789999998765 2 36789999999998888877642 26899999999999997765 6668999999
Q ss_pred cccCCCcc
Q psy16454 81 PKRAVPRT 88 (304)
Q Consensus 81 ~~~~~~~~ 88 (304)
+..+.+..
T Consensus 78 ~YFgq~~~ 85 (104)
T 1wey_A 78 LYFAQTLH 85 (104)
T ss_dssp EECCCCSS
T ss_pred EEecCCCC
Confidence 98887543
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.66 E-value=0.00032 Score=51.63 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=60.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCC-eeEEEeec
Q psy16454 97 ATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKG-KKVDVKKA 175 (304)
Q Consensus 97 ~~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g-~~i~v~~~ 175 (304)
...+-|.|-+.|... .+.|.++|++||+|.+..... ..-+-.|.|+++.+|++||.++...+.+ .-|-|+..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 345678899998874 677888999999999887621 2248999999999999999999999875 66777665
Q ss_pred cchHHH
Q psy16454 176 LSKEEM 181 (304)
Q Consensus 176 ~~~~~~ 181 (304)
..+.-+
T Consensus 95 ~d~~vi 100 (119)
T 1wwh_A 95 IDKNVM 100 (119)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 544433
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.59 E-value=0.00026 Score=49.85 Aligned_cols=57 Identities=19% Similarity=0.320 Sum_probs=46.3
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC
Q psy16454 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR 70 (304)
Q Consensus 5 ~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~ 70 (304)
+...+.++| .+|++....||.++|+.||.| .|.-+.|. .|||.|.+++.|..|+...
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 345556777 999999999999999999854 45556552 7999999999999999853
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.58 E-value=0.00021 Score=52.61 Aligned_cols=75 Identities=12% Similarity=0.186 Sum_probs=58.9
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCC-eeeccc
Q psy16454 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDS-KVVEPK 82 (304)
Q Consensus 4 ~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g-~~i~~~ 82 (304)
+....+.|.|=++|... ...|.++|++||.|.+..... ...+..|.|.++.+|++||..+...+.+ ..|-++
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVK 92 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEE
Confidence 34567889999999985 577889999999999887622 2359999999999999999999888864 445555
Q ss_pred cCC
Q psy16454 83 RAV 85 (304)
Q Consensus 83 ~~~ 85 (304)
+..
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 543
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.42 E-value=0.00036 Score=49.08 Aligned_cols=52 Identities=21% Similarity=0.413 Sum_probs=43.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
..++| .+|.++...||.++|++||.| .|.++.|. .|||.|.+++.|..|+..
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 35556 999999999999999999844 55666553 699999999999998864
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.39 E-value=0.00079 Score=47.26 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=49.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCC--CcccEEEEEeCCHHHHHHHHHh
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTK--KSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--~~kG~aFV~f~~~e~a~~al~~ 69 (304)
++|.|++||+.+||+++.+.+..+..+.....+.-+.+. ..-..|+|.|.+.+++....+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~ 64 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDR 64 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 689999999999999999999999877766666544322 2335699999999998888776
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.24 E-value=0.00046 Score=48.73 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=42.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh
Q psy16454 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 101 ~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
.++| .+|.++...||.++|++|| -..|.++.|. .|||.|.+++.|..|+..
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 4555 9999999999999999998 4456666653 699999999999999874
No 392
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.21 E-value=0.0015 Score=46.63 Aligned_cols=74 Identities=14% Similarity=0.156 Sum_probs=59.0
Q ss_pred CcceEEEcCCCCCC-C----HHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEE
Q psy16454 98 TVKKLFVGSLRDDI-T----EEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVD 171 (304)
Q Consensus 98 ~~~~l~v~~l~~~~-~----~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~ 171 (304)
-.++|+|.||+.++ + .+.++++|.+|.++......+.- --..|.|.++++|.+|-.. +...+.+++|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 34689999998765 2 25778999999988876665421 1479999999999999866 88889999999
Q ss_pred Eeeccc
Q psy16454 172 VKKALS 177 (304)
Q Consensus 172 v~~~~~ 177 (304)
|-.+.+
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 988763
No 393
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.19 E-value=0.0018 Score=45.46 Aligned_cols=66 Identities=11% Similarity=0.154 Sum_probs=51.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCC--ccceEEEEeCChhHHHHHHHh-CCccc
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGK--KRGFGFVEYNDYDPVDKACLK-GTHLV 165 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~--~~G~afV~f~~~~~a~~A~~~-~~~~~ 165 (304)
++|.|.+||..+||+++.+.+..+..+.....+..+.+.+ .-.-|+|.|.+.+++..-.+. +++.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 5899999999999999999999988777666655443322 224699999999999887766 66664
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.17 E-value=0.00064 Score=48.00 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=43.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~ 69 (304)
+.++| .+|++....||.++|+.||.| .|.-+.| | .|||.|.+++.|..|+..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD--T-----sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET--T-----EEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC--C-----eEEEEecCHHHHHHHHHh
Confidence 45566 999999999999999999843 4655655 2 799999999999999985
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.12 E-value=0.00031 Score=64.31 Aligned_cols=59 Identities=8% Similarity=0.182 Sum_probs=45.4
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR 70 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~ 70 (304)
+..++|+|. .|..+++++|.++|++||+|.++.+-++.. -||.|||.+.+++++++...
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSSC
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhcc
Confidence 346889997 899999999999999999999999887532 59999999999999887664
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.57 E-value=0.0011 Score=60.56 Aligned_cols=56 Identities=14% Similarity=0.307 Sum_probs=42.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh
Q psy16454 99 VKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 99 ~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
.++|+|. .|..+++.+|.++|++||+|.++.+..++. -||.|||.+.+++++++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 3689998 799999999999999999999998876532 5999999999999887755
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.45 E-value=0.0032 Score=44.45 Aligned_cols=64 Identities=9% Similarity=0.037 Sum_probs=45.1
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCC--CcccEEEEEeCCHHHHHHHHHh
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTK--KSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--~~kG~aFV~f~~~e~a~~al~~ 69 (304)
..+-+|.|+.||+.+||+++.+.+..+=++.....+.-+.+. ..-..|||.|.+.+++....+.
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~ 72 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDR 72 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHH
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 356789999999999999988888776544333322222211 1224699999999999988876
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.06 E-value=0.004 Score=43.95 Aligned_cols=68 Identities=9% Similarity=0.087 Sum_probs=47.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCC--ccceEEEEeCChhHHHHHHHh-CCccc
Q psy16454 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGK--KRGFGFVEYNDYDPVDKACLK-GTHLV 165 (304)
Q Consensus 98 ~~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~--~~G~afV~f~~~~~a~~A~~~-~~~~~ 165 (304)
.+.+|.|..||+.+||+++.+.++.+-.+.....+..+.+.+ .-.-|+|.|.+.+++..-.+. +.+.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 346899999999999999999888765543332222222211 123589999999999888776 66554
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.98 E-value=0.0098 Score=44.33 Aligned_cols=77 Identities=13% Similarity=0.276 Sum_probs=54.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeE-EEEeee--------CCCC-----CccceEEEEeCChhHHHHHHHhCCccc
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTS-VALVTE--------KETG-----KKRGFGFVEYNDYDPVDKACLKGTHLV 165 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~-v~i~~~--------~~~~-----~~~G~afV~f~~~~~a~~A~~~~~~~~ 165 (304)
..|.|-+.|.+. ...|.++|++||.|.+ +.+.+. +.+. ....+..|+|+++.+|++||.+++..|
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 467777886654 4566678999998866 221110 0000 124578999999999999999999999
Q ss_pred CCeeEEEeeccc
Q psy16454 166 KGKKVDVKKALS 177 (304)
Q Consensus 166 ~g~~i~v~~~~~ 177 (304)
++.-|=|.+...
T Consensus 87 ~G~mIGV~Py~~ 98 (132)
T 3p3d_A 87 NGVLLGVIPYTK 98 (132)
T ss_dssp TTEECEEEECCH
T ss_pred CcEEEEEEECCH
Confidence 999887877643
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.97 E-value=0.004 Score=46.42 Aligned_cols=78 Identities=12% Similarity=0.181 Sum_probs=53.5
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCCceeE-EEEEe--------CCCCC-----CcccEEEEEeCCHHHHHHHHHhCCC
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVD-VVVMK--------DPQTK-----KSRGFGFITYSSAHMVDDAQAARPH 72 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~-v~i~~--------~~~~~-----~~kG~aFV~f~~~e~a~~al~~~~~ 72 (304)
....|.|=+.|++.+ ..|.++|++||.|.+ +.+.. .++.. ....+..|+|.++.+|++||+.+..
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 345677778887766 457889999999865 22111 00011 1346889999999999999999999
Q ss_pred CcCCeeeccccCC
Q psy16454 73 TIDSKVVEPKRAV 85 (304)
Q Consensus 73 ~~~g~~i~~~~~~ 85 (304)
.+.+..|-+++..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9988766555543
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.97 E-value=0.43 Score=44.34 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=44.5
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR 70 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~ 70 (304)
.....++|+ +|..+...+|.++|+.|+.| +|+.+.+ ..|||.|.+++.|+.+++..
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHH
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHH
Confidence 345567776 99999999999999999954 4554443 27999999999999998874
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.92 E-value=0.79 Score=42.54 Aligned_cols=53 Identities=21% Similarity=0.348 Sum_probs=42.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh
Q psy16454 99 VKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 99 ~~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
...++|. +|..+...+|.++|+.|+. .+|.++.+. .|||.|.++++|..++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHH
Confidence 3456665 8888899999999999985 456655443 699999999999998865
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=83.35 E-value=5.6 Score=27.15 Aligned_cols=57 Identities=11% Similarity=-0.020 Sum_probs=47.1
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC
Q psy16454 6 EHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR 70 (304)
Q Consensus 6 ~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~ 70 (304)
+..+.|-|-|+|..+-+.++.-....+|---.|..+. |-|.|.|.+.++...|++.+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 4567788899999999999998888888766666654 46999999999999998764
No 404
>2h4m_C Hnrpa1 protein, fragment; heat repeat, nuclear import complex, protein transport; 3.05A {Homo sapiens}
Probab=68.70 E-value=4.8 Score=24.24 Aligned_cols=8 Identities=63% Similarity=1.232 Sum_probs=3.0
Q ss_pred CCCCCCCC
Q psy16454 280 GPMRGGGG 287 (304)
Q Consensus 280 g~~~~g~~ 287 (304)
++|.++..
T Consensus 18 G~~~gg~~ 25 (49)
T 2h4m_C 18 GPMKGGNF 25 (49)
T ss_dssp SCCCCCTT
T ss_pred CCccCCCC
Confidence 33433333
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=63.12 E-value=33 Score=23.34 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=52.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CC-------cccCCeeEE
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GT-------HLVKGKKVD 171 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~-------~~~~g~~i~ 171 (304)
.-|.|-|+|..+-..++--.....|---.|..+. |.|.|.|.+.++...|+.+ .+ .++.+.-+.
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqieirgqicd 84 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICD 84 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEE
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeee
Confidence 4678999999998888877777777655565542 4699999999999989865 21 235677777
Q ss_pred EeeccchHH
Q psy16454 172 VKKALSKEE 180 (304)
Q Consensus 172 v~~~~~~~~ 180 (304)
|-...++.+
T Consensus 85 vistipede 93 (129)
T 4eyt_A 85 VISTIPEDE 93 (129)
T ss_dssp EECCCCHHH
T ss_pred eeecCCchh
Confidence 765555544
No 406
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=58.98 E-value=34 Score=23.15 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=34.4
Q ss_pred CCCCCCCHHHHHHHHhc-CC-ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHH
Q psy16454 106 SLRDDITEEDLKEYFGQ-FG-EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC 158 (304)
Q Consensus 106 ~l~~~~~~~~l~~~F~~-~G-~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~ 158 (304)
.++..++..+|++.+++ |+ .|..|..+..+. +.. -|+|++..-++|....
T Consensus 29 ~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~~K--KA~V~L~~~~~a~dva 80 (86)
T 3j21_T 29 IVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-GEK--KAYVKLKPEYSASEVA 80 (86)
T ss_dssp EECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-SCE--EEEEEECTTSCHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-Cce--EEEEEcCCCCcHHHHH
Confidence 34678899999999987 54 567776665432 222 4999998777666543
No 407
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=56.93 E-value=43 Score=22.79 Aligned_cols=31 Identities=10% Similarity=0.222 Sum_probs=22.7
Q ss_pred eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhC
Q psy16454 35 VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR 70 (304)
Q Consensus 35 v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~ 70 (304)
|.+|.+.. ...||.||++...+++..++...
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t 70 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGM 70 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTC
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCC
Confidence 55555543 27899999999988887777643
No 408
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=53.58 E-value=42 Score=21.61 Aligned_cols=67 Identities=10% Similarity=0.191 Sum_probs=37.3
Q ss_pred eEEEcCC-CCCCCHHHHHHHhhhCCc-----eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCeeecccc
Q psy16454 10 KLFIGGL-DYRTSSETLKSHFEAWGD-----VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKVVEPKR 83 (304)
Q Consensus 10 ~v~V~nL-p~~~t~~~l~~~F~~~G~-----v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~i~~~~ 83 (304)
+|||.-= ...++..+|..++..-+. |-.|.+..+ |.||+.......+..-......+.++.+.++.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGKGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTCHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHHHHHHHHHhccccCcCceEEEEE
Confidence 5666322 345788888888876553 556777553 78999887554433333345667777776654
Q ss_pred C
Q psy16454 84 A 84 (304)
Q Consensus 84 ~ 84 (304)
+
T Consensus 74 ~ 74 (76)
T 2g0c_A 74 A 74 (76)
T ss_dssp C
T ss_pred C
Confidence 3
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=51.33 E-value=65 Score=24.91 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=35.9
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--hcCCceeEEEEeeeCCCCCccceEEEEeC-ChhHHHHHH
Q psy16454 101 KLFVGSLRD-D--------ITEEDLKEYF--GQFGEVTSVALVTEKETGKKRGFGFVEYN-DYDPVDKAC 158 (304)
Q Consensus 101 ~l~v~~l~~-~--------~~~~~l~~~F--~~~G~v~~v~i~~~~~~~~~~G~afV~f~-~~~~a~~A~ 158 (304)
.+.|-|+|. . .+..+|++.| +.|.+++ |..+.+.. -..++|.|+|. +..-...|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHH
Confidence 567777776 2 2447899977 8997765 44444432 46789999996 444455554
No 410
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=47.06 E-value=37 Score=21.27 Aligned_cols=56 Identities=13% Similarity=-0.037 Sum_probs=42.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCC
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGT 162 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~ 162 (304)
.++.|.++.-..-...|++.+.+ -.|..+.+-.. ...+.|+|.+.++..+||+..+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcC
Confidence 57888898877788899999998 78888877432 2357888886667777776643
No 411
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.67 E-value=54 Score=22.18 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=38.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhhCCc--eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH
Q psy16454 11 LFIGGLDYRTSSETLKSHFEAWGD--VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68 (304)
Q Consensus 11 v~V~nLp~~~t~~~l~~~F~~~G~--v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~ 68 (304)
.|+=-+..++|+.+|++.++++=. |..|..+..+. + .--|+|++..-.+|.....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~--~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-G--EKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-S--CEEEEEEECTTSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-C--ceEEEEEcCCCCcHHHHHH
Confidence 334447889999999999987643 67777776542 2 2369999987776665544
No 412
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=52.21 E-value=4.2 Score=28.98 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceE--EEEeCChhHHHHHHHhCCccc
Q psy16454 110 DITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFG--FVEYNDYDPVDKACLKGTHLV 165 (304)
Q Consensus 110 ~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~a--fV~f~~~~~a~~A~~~~~~~~ 165 (304)
..++++|.++..+.. +..+.+.+....++.. |. +=.|.+.++|.+|++..+..+
T Consensus 33 ~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~W-yvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 33 SSNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 345667777777764 4456555433333332 22 237899999999997755444
No 413
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=45.69 E-value=58 Score=20.91 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHhcCC-----ceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh-CCcccCCeeEEEeecc
Q psy16454 110 DITEEDLKEYFGQFG-----EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK-GTHLVKGKKVDVKKAL 176 (304)
Q Consensus 110 ~~~~~~l~~~F~~~G-----~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~~~ 176 (304)
.++.-+|..++..-+ .|-.|+|..+ |.||+-.... ++.++.. ....+.++++.|+.+.
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 345566666665433 4566776432 7899986544 4555554 7777889998887653
No 414
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=44.43 E-value=43 Score=25.92 Aligned_cols=56 Identities=9% Similarity=0.161 Sum_probs=37.0
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHh--hhCCceeEEEEEeCCCCCCcccEEEEEeCC-HHHHHHHHH
Q psy16454 10 KLFIGGLDY-R--------TSSETLKSHF--EAWGDVVDVVVMKDPQTKKSRGFGFITYSS-AHMVDDAQA 68 (304)
Q Consensus 10 ~v~V~nLp~-~--------~t~~~l~~~F--~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~-~e~a~~al~ 68 (304)
.+.|-|+|. . .+.++|++.| ..|.++. |+.+..+. -..++|.|+|.+ ..--..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHHH
Confidence 466788886 2 4557899977 9998865 55555433 356899999975 333334433
No 415
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=42.90 E-value=26 Score=29.25 Aligned_cols=33 Identities=15% Similarity=0.377 Sum_probs=26.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEe
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMK 42 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~ 42 (304)
..+.|.|||+.++...|..+++. ..+..+.+|.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 45789999999999999999987 5566655554
No 416
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=41.23 E-value=36 Score=23.12 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=21.6
Q ss_pred ceeEEEEeeeCCCCCccceEEEEeCC
Q psy16454 125 EVTSVALVTEKETGKKRGFGFVEYND 150 (304)
Q Consensus 125 ~v~~v~i~~~~~~~~~~G~afV~f~~ 150 (304)
+|++|+|..-...++.++||-|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887776678899999999976
No 417
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=40.99 E-value=15 Score=30.85 Aligned_cols=34 Identities=29% Similarity=0.207 Sum_probs=27.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEe
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMK 42 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~ 42 (304)
..+.|.|||+.++..-|..+++....+..+.+|.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4578999999999999999998766677666665
No 418
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=39.82 E-value=24 Score=30.90 Aligned_cols=23 Identities=9% Similarity=0.091 Sum_probs=19.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhh
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEA 31 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~ 31 (304)
..+.|+|||++++..-|..+++.
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 34789999999999999988875
No 419
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=38.30 E-value=52 Score=30.26 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=31.4
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhC---CceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAW---GDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~ 69 (304)
.++|.|..||+.++.+.|.+.+... ..+..|.-++|..+ +..-.--|+++....++..++.
T Consensus 275 ~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd-~~gvrivIelk~~~~~e~vl~~ 338 (514)
T 2inr_A 275 RKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETD-RTGLRIAIELKKDVNSESIKNY 338 (514)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCB-TTBCCEEEEC------CHHHHH
T ss_pred ccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCC-CCceEEEEEECCCcCHHHHHHH
Confidence 3689999999999999988776543 23333443444322 1111234556655555555554
No 420
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=38.01 E-value=26 Score=24.42 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=39.3
Q ss_pred EcCCCCCCCHHHHHHHH-hcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEE
Q psy16454 104 VGSLRDDITEEDLKEYF-GQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDV 172 (304)
Q Consensus 104 v~~l~~~~~~~~l~~~F-~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 172 (304)
|-.++..++-++|+.-. +.||.-.++... +. -..|-..+.+|.++||+.-.....-+.++|
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrss~~kSLrI 82 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRSIHMKSLKI 82 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHCSSCCSEEE
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccCCcccceEE
Confidence 33456777877776644 457776666654 22 378999999999999987333333333444
No 421
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=35.27 E-value=49 Score=23.11 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=21.3
Q ss_pred ceeEEEEeeeCCCCCccceEEEEeCC
Q psy16454 125 EVTSVALVTEKETGKKRGFGFVEYND 150 (304)
Q Consensus 125 ~v~~v~i~~~~~~~~~~G~afV~f~~ 150 (304)
.|++|+|..-...++.++||-|+|++
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788887766678899999999975
No 422
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=33.63 E-value=54 Score=23.08 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=20.5
Q ss_pred ceeEEEEeeeCCCCCccceEEEEeCC
Q psy16454 125 EVTSVALVTEKETGKKRGFGFVEYND 150 (304)
Q Consensus 125 ~v~~v~i~~~~~~~~~~G~afV~f~~ 150 (304)
+|++|+|..-...++.++||-|+|++
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57777777666678889999999975
No 423
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=33.04 E-value=88 Score=23.32 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=34.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-ceeEEEEeeeCCCCCccceEEEEeCChhHHHH
Q psy16454 102 LFVGSLRDDITEEDLKEYFGQ-FG-EVTSVALVTEKETGKKRGFGFVEYNDYDPVDK 156 (304)
Q Consensus 102 l~v~~l~~~~~~~~l~~~F~~-~G-~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~ 156 (304)
.++--++..++..+|++.+++ |+ .|..|..+..+. +.. -|+|.+..-.+|..
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g~K--KAyV~L~~~~dald 134 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-GTK--KAYVRLTADYDALD 134 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-SCE--EEEEEECTTCCHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-Cce--EEEEEeCCCCcHHH
Confidence 344445678899999988887 44 567776665432 222 49999976655544
No 424
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=32.01 E-value=28 Score=17.31 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=10.9
Q ss_pred CCHHHHHHHhhhC
Q psy16454 20 TSSETLKSHFEAW 32 (304)
Q Consensus 20 ~t~~~l~~~F~~~ 32 (304)
-++.+|++++++|
T Consensus 13 rnekelrdfiekf 25 (28)
T 1fme_A 13 RNEKELRDFIEKF 25 (28)
T ss_dssp CCHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHh
Confidence 3689999999887
No 425
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=31.89 E-value=95 Score=23.35 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=34.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-ceeEEEEeeeCCCCCccceEEEEeCChhHHHH
Q psy16454 102 LFVGSLRDDITEEDLKEYFGQ-FG-EVTSVALVTEKETGKKRGFGFVEYNDYDPVDK 156 (304)
Q Consensus 102 l~v~~l~~~~~~~~l~~~F~~-~G-~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~ 156 (304)
.++--++..++..+|++.+++ |+ .|..|..+..+. +.. -|||.+..-.+|..
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-g~K--KAyV~La~~~dAld 142 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-GNK--KAYIRLAADSDSLT 142 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-SCE--EEEEEECSSSCHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-CcE--EEEEEcCCCCcHHH
Confidence 344445678899999988887 44 567776665432 222 49999976655544
No 426
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=31.71 E-value=51 Score=24.33 Aligned_cols=47 Identities=4% Similarity=0.077 Sum_probs=29.8
Q ss_pred EcCCCCCCCHHHHHHHhhh-CC--ceeEEEEEeC----------CCCCCcccEEEEEeCC
Q psy16454 13 IGGLDYRTSSETLKSHFEA-WG--DVVDVVVMKD----------PQTKKSRGFGFITYSS 59 (304)
Q Consensus 13 V~nLp~~~t~~~l~~~F~~-~G--~v~~v~i~~~----------~~~~~~kG~aFV~f~~ 59 (304)
|-.+...++++++++.+.+ +. .|.++.+=.. .+......|.|+.|++
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 5667778999999999953 43 2444443211 1123346789999986
No 427
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=31.64 E-value=81 Score=22.15 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=26.0
Q ss_pred eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCC
Q psy16454 35 VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHT 73 (304)
Q Consensus 35 v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~ 73 (304)
|.+|....+ .+||.|||=.++.++++|++-..+.
T Consensus 41 I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 41 IKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred eEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccce
Confidence 556655433 5799999999999999999875443
No 428
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=31.45 E-value=1.2e+02 Score=20.88 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=35.8
Q ss_pred EcCCCCCCCHHHHHHHHh-cCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh
Q psy16454 104 VGSLRDDITEEDLKEYFG-QFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 104 v~~l~~~~~~~~l~~~F~-~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
|-.++..+.-++|+.... .||...++....+ .-.|-..+.+|.++||+.
T Consensus 33 Ii~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvel 82 (100)
T 2npt_B 33 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVEL 82 (100)
T ss_dssp EEEECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHH
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHH
Confidence 334567788888876554 4787777766532 268889999999999977
No 429
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=31.11 E-value=1.1e+02 Score=20.74 Aligned_cols=54 Identities=15% Similarity=-0.008 Sum_probs=35.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhhCCce---eEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q psy16454 11 LFIGGLDYRTSSETLKSHFEAWGDV---VDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 11 v~V~nLp~~~t~~~l~~~F~~~G~v---~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~ 69 (304)
|.+-.+|.+++-++|.+.+...=++ ..+.+......+ -+|++.+.++.+.|+..
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeG-----D~itisSd~EL~eAl~l 73 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEG-----DPCTVSSQLELEEAFRL 73 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSS-----CCEECCSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCC-----CcccccCHHHHHHHHHH
Confidence 4555678889988888766543332 234443322223 37899999999999986
No 430
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=31.10 E-value=83 Score=21.15 Aligned_cols=54 Identities=13% Similarity=0.044 Sum_probs=37.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhhCC--ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHH
Q psy16454 11 LFIGGLDYRTSSETLKSHFEAWG--DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQ 67 (304)
Q Consensus 11 v~V~nLp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al 67 (304)
.|+=.++.++|+.+|++.++++= .|..|..+..+. ..--|+|++...++|....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~---~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD---GEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT---SSEEEEEEECTTSCHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC---CceEEEEEECCCCcHHHHH
Confidence 34445788999999999998753 377777776543 2236999998776655443
No 431
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=29.67 E-value=1.3e+02 Score=20.42 Aligned_cols=54 Identities=9% Similarity=0.110 Sum_probs=32.7
Q ss_pred EEEcCCCCCCCHHHHHHHHh-------cCCceeEEEEeeeCCCCCccce---EEEEeCChhHHHH
Q psy16454 102 LFVGSLRDDITEEDLKEYFG-------QFGEVTSVALVTEKETGKKRGF---GFVEYNDYDPVDK 156 (304)
Q Consensus 102 l~v~~l~~~~~~~~l~~~F~-------~~G~v~~v~i~~~~~~~~~~G~---afV~f~~~~~a~~ 156 (304)
|.+-.|...++++++.++.+ +.-.|..+.+-.+.. ...++| -+++|++.++.+.
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHH
Confidence 33445667777766554443 355677877766643 333333 3558999888764
No 432
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=28.88 E-value=1.2e+02 Score=20.64 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHHHHH-hcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHhCCcccCCeeEEE
Q psy16454 106 SLRDDITEEDLKEYF-GQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDV 172 (304)
Q Consensus 106 ~l~~~~~~~~l~~~F-~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 172 (304)
.++..+.-++|+.-. ..||...++....+ --.|-..+.+|.++|++.......=+.++|
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~~mkSLRI 78 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSSSMKSLRI 78 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHSTTTTEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccCccccceEE
Confidence 456677777777655 34777767666532 257888999999999977333333334444
No 433
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=28.85 E-value=97 Score=21.58 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=34.7
Q ss_pred EcCCCCCCCHHHHHHHH-hcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh
Q psy16454 104 VGSLRDDITEEDLKEYF-GQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 104 v~~l~~~~~~~~l~~~F-~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
|-.++..+.-++|+.-. ..||...++....+ .-.|-..+.+|.++|++.
T Consensus 44 Iiqf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvel 93 (111)
T 2c60_A 44 IIAFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDI 93 (111)
T ss_dssp EEEECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHH
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHH
Confidence 33456777877777655 34777667666532 257888999999999977
No 434
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=28.48 E-value=39 Score=28.22 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=27.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTE 134 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~ 134 (304)
..+.|+|||+.++...|.++++. ..+..+.++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 46799999999999999999987 56666555543
No 435
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=27.91 E-value=1.6e+02 Score=20.86 Aligned_cols=59 Identities=10% Similarity=0.130 Sum_probs=36.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHh-------cCCceeEEEEeeeCCC-CCccce---EEEEeCChhHHHHHH
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFG-------QFGEVTSVALVTEKET-GKKRGF---GFVEYNDYDPVDKAC 158 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~-------~~G~v~~v~i~~~~~~-~~~~G~---afV~f~~~~~a~~A~ 158 (304)
+.|.+-.|...++++++.++.+ +.-.|..+.+-.+... ...++| .+++|++.++.+.-+
T Consensus 22 ~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~ 91 (121)
T 3bb5_A 22 YHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYA 91 (121)
T ss_dssp EEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHH
Confidence 4555567788888776655543 3556777777665432 333443 355899998876544
No 436
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=27.80 E-value=97 Score=24.58 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=22.7
Q ss_pred cccEEEEEeCCHHHHHHHHHhCCCCcC
Q psy16454 49 SRGFGFITYSSAHMVDDAQAARPHTID 75 (304)
Q Consensus 49 ~kG~aFV~f~~~e~a~~al~~~~~~~~ 75 (304)
.|||.|||=.++.++++|++-..+.+.
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 679999999999999999987655443
No 437
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=27.39 E-value=73 Score=28.91 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=35.4
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhC---CceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHH
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAW---GDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~ 68 (304)
..++|.|..||+.++.+.|.+.+... ..+..|.-++|..+.+.--.--|+.+....++..++
T Consensus 235 ~~~~ivItElPy~v~~~~lie~i~~l~~~kki~~I~d~rDe~sd~~gvrivI~lk~~~~~~~~l~ 299 (470)
T 3ilw_A 235 GRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVIN 299 (470)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTTTBCCEEEEECTTSCHHHHHH
T ss_pred CCCEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccccccCCCCCceEEEEEECCCCCHHHHHH
Confidence 34579999999999999888776543 233334444443111111123456665545554444
No 438
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=26.91 E-value=64 Score=22.26 Aligned_cols=58 Identities=12% Similarity=0.048 Sum_probs=33.9
Q ss_pred EEEEEeCCHHHHHHHHHh----CCCCcCCeeeccccCCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcC
Q psy16454 52 FGFITYSSAHMVDDAQAA----RPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQF 123 (304)
Q Consensus 52 ~aFV~f~~~e~a~~al~~----~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~ 123 (304)
|+++.|..+.++.+-++. +...+ +.+.++... ...-..+|| |.++++++++.++.++|
T Consensus 7 Y~~~~~~a~~~~v~eler~~r~~e~vl--R~l~v~~e~----------Mr~YE~m~I--l~P~l~ee~~~~~ve~~ 68 (96)
T 2kjw_A 7 FLWYQVEMPEDRVNDLARELRIRDNVR--RVMVVASTT----------PGRYEVNIV--LNPNLDQSQLALEKEII 68 (96)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHCTTCS--EEEEEECSS----------SSCEEEEEE--CCSSCCHHHHHHHHHHH
T ss_pred EEEEEeecChhHHHHHHHHhccchhhh--hhhheehhh----------hhhhheeee--eCCCCCHHHHHHHHHHH
Confidence 788889877666555543 33333 233332221 113346777 67788888887776654
No 439
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=26.73 E-value=45 Score=25.11 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHhhhC-CceeEEEEEeC----CCCCCcccEEEEEeCCHHHHHHH
Q psy16454 18 YRTSSETLKSHFEAW-GDVVDVVVMKD----PQTKKSRGFGFITYSSAHMVDDA 66 (304)
Q Consensus 18 ~~~t~~~l~~~F~~~-G~v~~v~i~~~----~~~~~~kG~aFV~f~~~e~a~~a 66 (304)
...+..||++.+.+. ..-.++.++.. --.+++.|||.| |.+.+.|.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 467889999888763 33222222221 123567788877 6777776655
No 440
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=26.26 E-value=43 Score=22.07 Aligned_cols=59 Identities=12% Similarity=0.083 Sum_probs=33.2
Q ss_pred EEEEEeCCHHHHHHHHHh----CCCCcCCeeeccccCCCccccCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhcCC
Q psy16454 52 FGFITYSSAHMVDDAQAA----RPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFG 124 (304)
Q Consensus 52 ~aFV~f~~~e~a~~al~~----~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G 124 (304)
|.++.|+...++-+-|+. +...+ +.+.++...++ .-..+|| |.++++++++++.+++|-
T Consensus 7 Yvl~~~~a~~~~i~Eler~~rine~Vl--R~l~vr~d~~r----------~YE~m~I--l~P~l~ee~~~~~vek~~ 69 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELRIRDNVR--RVMVVASTTPG----------RYEVNIV--LNPNLDQSQLQNEKEIIQ 69 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTSTTEE--EEEEEECSSTT----------EEEEEEE--ECTTCCHHHHHHHHHHHH
T ss_pred EEEEEEEeCHhHHHHHHHHhCCCHHHH--HHHHHhccCCC----------ceEEEEE--ECCCCCHHHHHHHHHHHH
Confidence 788888765444444433 22322 33333333222 2235676 456789999988887763
No 441
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=25.96 E-value=1.7e+02 Score=20.38 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHhhhC-Cc----eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHH
Q psy16454 18 YRTSSETLKSHFEAW-GD----VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA 66 (304)
Q Consensus 18 ~~~t~~~l~~~F~~~-G~----v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~a 66 (304)
.+.+..+|++.+.+. .. |.=..+.+.--.+++.|||.| |.+.+.|++.
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 80 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMATI 80 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 667899999887654 22 222222233234677888866 7777666553
No 442
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=25.95 E-value=37 Score=27.99 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=26.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy16454 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTE 134 (304)
Q Consensus 101 ~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~ 134 (304)
-..|.|||+.++.+.|..+++....+..+.++..
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Q 131 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQ 131 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEEEe
Confidence 3489999999999999999987666666666544
No 443
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=25.91 E-value=1.7e+02 Score=20.62 Aligned_cols=48 Identities=17% Similarity=0.123 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHhhhCCc----eeEEEEEe-CCCCCCcccEEEEEeCCHHHHHHH
Q psy16454 18 YRTSSETLKSHFEAWGD----VVDVVVMK-DPQTKKSRGFGFITYSSAHMVDDA 66 (304)
Q Consensus 18 ~~~t~~~l~~~F~~~G~----v~~v~i~~-~~~~~~~kG~aFV~f~~~e~a~~a 66 (304)
.+.+..+|++.+.+.=. ++-|.-++ .--.+++.|||.| |.+.+.|++.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 46788899888765422 22222222 2224578888876 7777777654
No 444
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=25.79 E-value=49 Score=27.17 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=25.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEe
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMK 42 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~ 42 (304)
..+.|.|||+.++...|..+++..-.+..+.+|.
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m~ 124 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHFML 124 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEEEE
Confidence 3578999999999999989988654455555543
No 445
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=25.50 E-value=1.7e+02 Score=20.30 Aligned_cols=50 Identities=14% Similarity=0.266 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHhhhCCc-----eeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHH
Q psy16454 17 DYRTSSETLKSHFEAWGD-----VVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQ 67 (304)
Q Consensus 17 p~~~t~~~l~~~F~~~G~-----v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al 67 (304)
..+.+..+|++.+.+.=. |.=..+.+.--.+++.|||.| |.+.+.|++.-
T Consensus 27 ~~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 27 GSTPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SSCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 366788999988865522 211222232234577788866 77777666654
No 446
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=24.85 E-value=1.9e+02 Score=23.40 Aligned_cols=85 Identities=15% Similarity=0.220 Sum_probs=48.8
Q ss_pred cceEEEcCCCCCCC--HHHHHHHHhc-----CCc--------eeEEEEeee---CCCCCccceEEEEeCChhHHHHHH--
Q psy16454 99 VKKLFVGSLRDDIT--EEDLKEYFGQ-----FGE--------VTSVALVTE---KETGKKRGFGFVEYNDYDPVDKAC-- 158 (304)
Q Consensus 99 ~~~l~v~~l~~~~~--~~~l~~~F~~-----~G~--------v~~v~i~~~---~~~~~~~G~afV~f~~~~~a~~A~-- 158 (304)
.+.|.|-+||.... +..+..+|+. |.. |.++.=... .....++ ...|.|....+-++.|
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR-~IIvK~~~~~~KErILka 130 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPR-HIIVRFTKVEMKEKMLRA 130 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCC-CEEEEESSHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCC-eEEEEecccccHHHHHHH
Confidence 36899999999876 4444444432 432 222211111 1111233 4677887666544444
Q ss_pred -Hh-CCcccCCeeEEEeeccchHHHhhh
Q psy16454 159 -LK-GTHLVKGKKVDVKKALSKEEMAKL 184 (304)
Q Consensus 159 -~~-~~~~~~g~~i~v~~~~~~~~~~~~ 184 (304)
.. ....+.|.+|++....+.+....+
T Consensus 131 aR~k~~vtykG~pIrlsaDfSaeTLq~R 158 (233)
T 2yko_A 131 AREKGRVTLKGKPIRLTVDLSAETLQAR 158 (233)
T ss_dssp HHTTSCEEETTEEEEEEECCCHHHHHHH
T ss_pred HHHhcccccCCCceEEeCCCCHHHHHHH
Confidence 33 467789999999988877655443
No 447
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=24.84 E-value=1.2e+02 Score=18.46 Aligned_cols=56 Identities=5% Similarity=0.022 Sum_probs=40.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeC----ChhHHHHHHHhC
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYN----DYDPVDKACLKG 161 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~----~~~~a~~A~~~~ 161 (304)
.++.|.++.-..-...|++.+.+.-.|..+.+-... .-+.|+|+ +.++..+||+..
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ------NRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHC
Confidence 367788887666778899999988788888775432 35889985 455666777653
No 448
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=24.82 E-value=1.7e+02 Score=20.05 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=34.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHh-------cCCceeEEEEeeeCCC---CCccce---EEEEeCChhHHHHH
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFG-------QFGEVTSVALVTEKET---GKKRGF---GFVEYNDYDPVDKA 157 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~-------~~G~v~~v~i~~~~~~---~~~~G~---afV~f~~~~~a~~A 157 (304)
+.|.+-.|...++++++.++.+ +.-.|..+.+-.+... ...++| -+++|++.++.+.-
T Consensus 10 ~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y 80 (108)
T 1tr0_A 10 KHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQEY 80 (108)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHHH
Confidence 3455556777888777655443 3456777776665432 333443 35589999887643
No 449
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=24.48 E-value=22 Score=29.85 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=27.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEeee
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTE 134 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~~~ 134 (304)
..+.|.|||+.++...|.++++....+..+.++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 46789999999999999999986556666666544
No 450
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=24.22 E-value=1.1e+02 Score=20.60 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=37.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCC
Q psy16454 11 LFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARP 71 (304)
Q Consensus 11 v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~ 71 (304)
||+=-||.+++-++|++.+..==.+.+..++..+.. +.+- +..+-++.+.|++.+.
T Consensus 23 IiAIrvP~di~~~~L~dKi~~RLk~~~~~l~~ykde--~~g~---~i~sD~dl~~aiqrn~ 78 (85)
T 1ip9_A 23 IFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKLFD--GSGE---EIKTDSQVSNIIQAKL 78 (85)
T ss_dssp CEEEEECSCCCHHHHHHHHHHHHTSSCEEEEECCSS--SCCS---CCCSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccceEEEEecCC--CCCC---cccCHHHHHHHHHhcC
Confidence 667779999999999987654334545555543322 2222 7888899999998653
No 451
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=23.90 E-value=1.2e+02 Score=18.10 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=38.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeC---CHHHHHHHHHhC
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYS---SAHMVDDAQAAR 70 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~---~~e~a~~al~~~ 70 (304)
.++.|.++.-......|++.+.+.-.|.++.+-... ..+.|+|. +.++..++++..
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~~ 62 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVERA 62 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTCCHHHHHHHHHHT
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCHHHHHHHHHHc
Confidence 467788887777788899999998888887775432 35778874 344555566543
No 452
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=23.43 E-value=68 Score=28.63 Aligned_cols=62 Identities=8% Similarity=0.153 Sum_probs=42.8
Q ss_pred cCeEEEcCCCCCC----CHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHhCCCCcCCee
Q psy16454 8 LRKLFIGGLDYRT----SSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPHTIDSKV 78 (304)
Q Consensus 8 ~~~v~V~nLp~~~----t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~~~~~~~g~~ 78 (304)
...-+|+||..-. ....+.++.++||+|..+.+-. .-+|...+++.+++++......+..+.
T Consensus 14 ~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~~~~~~f~~rp 79 (494)
T 3swz_A 14 LSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLIKKGKDFSGRP 79 (494)
T ss_dssp BCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHTTTTTTTBBCC
T ss_pred CCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHHhCcHhhCCCC
Confidence 3455788876422 2466788889999998887643 346777899999999977655554443
No 453
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=23.20 E-value=1.4e+02 Score=18.34 Aligned_cols=63 Identities=11% Similarity=0.117 Sum_probs=42.9
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeCC----HHHHHHHHHhC
Q psy16454 2 TKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSS----AHMVDDAQAAR 70 (304)
Q Consensus 2 ~~~~~~~~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~~----~e~a~~al~~~ 70 (304)
|.......++.|.++.-......|+..+...-.|.++.+-.. ...+.|+|.. .++..++++..
T Consensus 3 p~~~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 3 PSMGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp CTTTCEEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 344455567889999877788889999998877777766442 2367888853 34455556543
No 454
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=23.15 E-value=48 Score=27.12 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=26.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEe
Q psy16454 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMK 42 (304)
Q Consensus 9 ~~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~ 42 (304)
..+.|.|||+.++...|..+++....+..+.++.
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~ 129 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMV 129 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEEEE
Confidence 4578999999999999999998765565555554
No 455
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=22.92 E-value=28 Score=28.78 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=26.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCceeEEEEEe
Q psy16454 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMK 42 (304)
Q Consensus 10 ~v~V~nLp~~~t~~~l~~~F~~~G~v~~v~i~~ 42 (304)
...|.|||+.++.+.|..+++....+..+.+|.
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 347899999999999999998766676666665
No 456
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.84 E-value=1.1e+02 Score=20.57 Aligned_cols=26 Identities=23% Similarity=0.205 Sum_probs=22.1
Q ss_pred ceeEEEEEeCCCCCCcccEEEEEeCC
Q psy16454 34 DVVDVVVMKDPQTKKSRGFGFITYSS 59 (304)
Q Consensus 34 ~v~~v~i~~~~~~~~~kG~aFV~f~~ 59 (304)
+|++|++.+-...++-+++|=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68899998876678889999999975
No 457
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=21.75 E-value=1.1e+02 Score=29.13 Aligned_cols=62 Identities=3% Similarity=0.078 Sum_probs=36.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhhC---CceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q psy16454 8 LRKLFIGGLDYRTSSETLKSHFEAW---GDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 8 ~~~v~V~nLp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~ 69 (304)
.++|.|..||+.++.+.|.+.+... ..+..|.-++|..+.+.--.--|+++....++..++.
T Consensus 457 ~~~ivITElPy~v~k~~lie~I~~lv~~kki~~I~d~rDetsd~~gvrivI~lk~~~~~~~~l~~ 521 (692)
T 2xcs_B 457 RQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNN 521 (692)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHHTTCSCCEEEEEECCBTTTBSCEEEEECTTSCHHHHHHH
T ss_pred CceEEEEecCCcccHHHHHHHHHHHHhcCCCCCeeeccccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 4679999999999999888766543 3343444444431112111245567665555554443
No 458
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=21.60 E-value=61 Score=17.98 Aligned_cols=15 Identities=27% Similarity=0.271 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHhhhC
Q psy16454 18 YRTSSETLKSHFEAW 32 (304)
Q Consensus 18 ~~~t~~~l~~~F~~~ 32 (304)
.++|.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 468999999999865
No 459
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=21.50 E-value=1.5e+02 Score=27.13 Aligned_cols=62 Identities=10% Similarity=0.128 Sum_probs=36.3
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhC---CceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAW---GDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~al~~ 69 (304)
..++|.|..||+.++.+.|.+.+... ..+..|.-++|..+... -.--|+.+....++..++.
T Consensus 225 ~~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~g-vrivIelk~~~~~~~~l~~ 289 (500)
T 3lpx_A 225 GKETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKDG-MRMVIEIKRGEVGEVVLNN 289 (500)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHTTSSCSEEEEEECCCSSC-CCEEEEECTTSCHHHHHHH
T ss_pred CCceEEEEecCCccCHHHHHHHHHHHHhcCCCCccccchhcCCCCc-eEEEEEECCCCCHHHHHHH
Confidence 34679999999999999888876543 33433444444332221 1235566655555544443
No 460
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=21.23 E-value=2.9e+02 Score=21.32 Aligned_cols=122 Identities=10% Similarity=0.093 Sum_probs=62.0
Q ss_pred eEEEcCCC----CCCCHHHHHHHhhhCCceeEEEEEeCCCCCCcccEEEEEeC---CHHHHHHHHHh-----CCCCcCCe
Q psy16454 10 KLFIGGLD----YRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYS---SAHMVDDAQAA-----RPHTIDSK 77 (304)
Q Consensus 10 ~v~V~nLp----~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~kG~aFV~f~---~~e~a~~al~~-----~~~~~~g~ 77 (304)
.+++++|. ..+.-+||+++|+..| ..+|+... ++ +-|.|+ +.++.++.++. ....+.--
T Consensus 8 iaLLRGINVGG~nkv~MadLr~~l~~lG-f~~V~TyI--~S------GNvvF~s~~~~~~l~~~ie~~l~~~fg~~v~v~ 78 (183)
T 2hiy_A 8 ALLVRGINVGGKNKVVMAELRQELTNLG-LEKVESYI--NS------GNIFFTSIDSKAQLVEKLETFFAVHYPFIQSFS 78 (183)
T ss_dssp EEECSSCSCC-CCCCCHHHHHHHHHHHT-CEEEEEET--TT------TEEEEEECSCHHHHHHHHHHHHHHHCTTCCCCE
T ss_pred hhhccceecCCCCcccHHHHHHHHHHcC-CccceEEE--ec------CCEEEecCCCHHHHHHHHHHHHHHhcCCCCCEE
Confidence 45667663 4588999999999997 55566554 22 234443 32333333333 12222211
Q ss_pred eeccccCCCccccCCCC-CCCCcceEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEEeeeCCCCCccceEEE-EeC
Q psy16454 78 VVEPKRAVPRTEINRPE-AGATVKKLFVGSLRDDITEEDLKEYFGQFG-EVTSVALVTEKETGKKRGFGFV-EYN 149 (304)
Q Consensus 78 ~i~~~~~~~~~~~~~~~-~~~~~~~l~v~~l~~~~~~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~G~afV-~f~ 149 (304)
......-. ......|- ...+..+++|.-|+..++.++|.+.+.... ..+.+.+.. ...|+ .|.
T Consensus 79 vrs~~el~-~i~~~~Pf~~~~~~~~~~v~F~~~~~~~~~~~~~l~~~~~~~E~~~~~~--------~~iy~~~~~ 144 (183)
T 2hiy_A 79 LLSLEDFE-AELENLPAWWSRDLARKDFLFYTEGLDVDQVIATVESLELKDEVLYFGK--------LGIFWGKFS 144 (183)
T ss_dssp EEEHHHHH-HHHTTCCGGGGSCCSEEEEEEECTTCCHHHHHHHHHTSCCCSEEEEECS--------SEEEEEECC
T ss_pred EecHHHHH-HHHHhCCCCccCCCcEEEEEEECCCCChHHHHHHhhccCCCCeEEEEEC--------CEEEEEEeC
Confidence 11110000 00001110 011346788888888889999777665443 345555532 25677 663
No 461
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=21.22 E-value=1.5e+02 Score=22.27 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=35.2
Q ss_pred EcCCCCCCCHHHHHHHhhhCC--ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHH
Q psy16454 13 IGGLDYRTSSETLKSHFEAWG--DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA 66 (304)
Q Consensus 13 V~nLp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~a 66 (304)
+=-+..++|..+|++.++.+- .|..|..+..+. + .--|||++....+|...
T Consensus 91 vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-g--~KKAyV~La~~~dAldv 143 (150)
T 4a17_R 91 VFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-G--NKKAYIRLAADSDSLTL 143 (150)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-S--CEEEEEEECSSSCHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--cEEEEEEcCCCCcHHHH
Confidence 334678899999998888763 367777776543 2 23599999876555544
No 462
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=20.72 E-value=1.4e+02 Score=22.22 Aligned_cols=51 Identities=12% Similarity=0.153 Sum_probs=35.3
Q ss_pred EcCCCCCCCHHHHHHHhhhCC--ceeEEEEEeCCCCCCcccEEEEEeCCHHHHHHH
Q psy16454 13 IGGLDYRTSSETLKSHFEAWG--DVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA 66 (304)
Q Consensus 13 V~nLp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~~~~kG~aFV~f~~~e~a~~a 66 (304)
+=-+..++|..+|++.++++- .|..|..+..+. + .--|||++....+|...
T Consensus 83 vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g--~KKAyV~L~~~~daldv 135 (142)
T 3u5e_X 83 VFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-G--TKKAYVRLTADYDALDI 135 (142)
T ss_dssp EEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-S--CEEEEEEECTTCCHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--ceEEEEEeCCCCcHHHH
Confidence 334678899999998888763 367777776543 2 23599999876555544
No 463
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=20.45 E-value=55 Score=26.86 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=24.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEEe
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALV 132 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~~G~v~~v~i~ 132 (304)
..+.|+|||+.++...|.++++..-.+..+.++
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m 123 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHFM 123 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEEE
Confidence 368999999999999998888754445554444
No 464
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=20.39 E-value=1.7e+02 Score=22.20 Aligned_cols=37 Identities=27% Similarity=0.439 Sum_probs=27.1
Q ss_pred CCHHHHHHHHhcCCcee---EEEEeeeCCCCCccceEEEE
Q psy16454 111 ITEEDLKEYFGQFGEVT---SVALVTEKETGKKRGFGFVE 147 (304)
Q Consensus 111 ~~~~~l~~~F~~~G~v~---~v~i~~~~~~~~~~G~afV~ 147 (304)
.|+++|+++-.+.+.+. ++.+..+..+++.+.++|-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58999999999988763 45565554478888777654
No 465
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=20.32 E-value=1.2e+02 Score=23.49 Aligned_cols=38 Identities=8% Similarity=0.267 Sum_probs=26.7
Q ss_pred CHHHHHHHHhcCCceeEEEEeeeCCCCCccceEEEEeCChhHHHHHHHh
Q psy16454 112 TEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160 (304)
Q Consensus 112 ~~~~l~~~F~~~G~v~~v~i~~~~~~~~~~G~afV~f~~~~~a~~A~~~ 160 (304)
..++|+.+|+.|-.++ .+ |-+.+-.|.+++.|.+.|+.
T Consensus 131 ~l~~i~~fF~~YK~le---------~g--K~v~v~gw~~~~~A~~~I~~ 168 (173)
T 3d53_A 131 LKKRIVHFFEHYKDLE---------KG--KWVKVTGWGDKVKAETLIKE 168 (173)
T ss_dssp HHHHHHHHHHHTTTTS---------TT--CCEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc---------CC--CcEEEccCcCHHHHHHHHHH
Confidence 3478899999994332 12 22677889999999888754
No 466
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=20.09 E-value=81 Score=21.20 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=22.6
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHhhhCC
Q psy16454 7 HLRKLFIGGLDYRTSSETLKSHFEAWG 33 (304)
Q Consensus 7 ~~~~v~V~nLp~~~t~~~l~~~F~~~G 33 (304)
.-..|.|...|..++.++.++++++|=
T Consensus 18 tPvvi~v~~~~q~v~~~eae~~L~~FI 44 (87)
T 2rf4_B 18 TPVVIHATQLPQHVSTDEVLQFLESFI 44 (87)
T ss_dssp CCCEEEESSCCEECCHHHHHHHHHHHH
T ss_pred CCeEEEeecCCccCCHHHHHHHHHHHH
Confidence 445688888999999999999998883
No 467
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=20.09 E-value=85 Score=27.30 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=19.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhc
Q psy16454 100 KKLFVGSLRDDITEEDLKEYFGQ 122 (304)
Q Consensus 100 ~~l~v~~l~~~~~~~~l~~~F~~ 122 (304)
..+.|.|||++++..-|..+++.
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 35789999999999999888874
Done!