RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16454
(304 letters)
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 145 bits (365), Expect = 2e-43
Identities = 98/181 (54%), Positives = 134/181 (74%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
KEPE LRKLFIGGL + T+ E+L+SHFE WG + D VVM+DP TK+SRGFGF+TY++
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQ 122
VD A ARPH +D +VVEPKRAV R + RP A TVKK+FVG +++D E L++YF Q
Sbjct: 61 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 120
Query: 123 FGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMA 182
+G++ + ++T++ +GKKRGF FV ++D+D VDK ++ H V G +V+KALSK+EMA
Sbjct: 121 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 180
Query: 183 K 183
Sbjct: 181 S 181
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 93.9 bits (233), Expect = 4e-25
Identities = 54/83 (65%), Positives = 66/83 (79%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
KEPE LRKLFIGGL + T+ E+L+SHFE WG + D VVM+DP TK+SRGFGF+TY++
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 63 VDDAQAARPHTIDSKVVEPKRAV 85
VD A ARPH +D +VVEPKRAV
Sbjct: 61 VDAAMNARPHKVDGRVVEPKRAV 83
Score = 82.4 bits (203), Expect = 1e-20
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 99 VKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC 158
++KLF+G L + T+E L+ +F Q+G +T ++ + T + RGFGFV Y + VD A
Sbjct: 6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 65
Query: 159 LKGTHLVKGKKVDVKKALS 177
H V G+ V+ K+A+S
Sbjct: 66 NARPHKVDGRVVEPKRAVS 84
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 89.0 bits (220), Expect = 6e-23
Identities = 52/87 (59%), Positives = 68/87 (78%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
+E E RKLFIGGL + T+ E+L++++E WG + D VVM+DP +K+SRGFGF+T+SS
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTE 89
VD A AARPH+ID +VVEPKRAV R E
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVAREE 101
Score = 77.8 bits (191), Expect = 8e-19
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 80 EPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGK 139
+ VP R + +KLF+G L + TEE L+ Y+ Q+G++T ++ + + +
Sbjct: 3 KTLETVPLERKKREKE--QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR 60
Query: 140 KRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEE 180
RGFGFV ++ VD A H + G+ V+ K+A+++EE
Sbjct: 61 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREE 101
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 85.0 bits (210), Expect = 1e-21
Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 82 KRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKR 141
KRAV +T L V L TE+DLKEYF FGEV V + + +TG +
Sbjct: 2 KRAVQKT-----------SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSK 50
Query: 142 GFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEM 181
GFGFV + +Y+ K + H++ G+ D K SK+
Sbjct: 51 GFGFVRFTEYETQVKV-MSQRHMIDGRWCDCKLPNSKQSQ 89
Score = 78.1 bits (192), Expect = 5e-19
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 ITKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSA 60
+ + + L + GL ++T+ + LK +F +G+V+ V V KD +T S+GFGF+ ++
Sbjct: 1 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEY 60
Query: 61 HMVDDAQAARPHTIDSKVVEPKRAVPRTEIN 91
+ R H ID + + K + +
Sbjct: 61 ETQVKVMSQR-HMIDGRWCDCKLPNSKQSQD 90
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 81.2 bits (200), Expect = 2e-20
Identities = 33/75 (44%), Positives = 46/75 (61%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160
K+FVG L D EE ++EYFG FGEV S+ L + +T K+RGF F+ + + +PV K K
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 161 GTHLVKGKKVDVKKA 175
H V K ++K A
Sbjct: 61 KYHNVGLSKCEIKVA 75
Score = 76.2 bits (187), Expect = 2e-18
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+F+GGL T E ++ +F +G+V + + D +T K RGF FIT+ V
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 70 RPHTIDSKVVEPKRA 84
+ H + E K A
Sbjct: 61 KYHNVGLSKCEIKVA 75
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 76.6 bits (188), Expect = 1e-18
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+FIGGL + T+ + LK +F +G+VVD + DP T +SRGFGF+ + + VD
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 70 RPHTIDSKVVEPKRA 84
+ H ++ KV++PKRA
Sbjct: 61 KEHKLNGKVIDPKRA 75
Score = 75.8 bits (186), Expect = 2e-18
Identities = 33/75 (44%), Positives = 48/75 (64%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160
K+F+G L D T++DLK+YF +FGEV L + TG+ RGFGFV + + + VDK +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 161 GTHLVKGKKVDVKKA 175
H + GK +D K+A
Sbjct: 61 KEHKLNGKVIDPKRA 75
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 76.7 bits (188), Expect = 1e-18
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKA 157
TVKK+FVG +++D E L++YF Q+G++ + ++T++ +GKKRGF FV ++D+D VDK
Sbjct: 1 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 60
Query: 158 CLKGTHLVKGKKVDVKKAL 176
++ H V G +V+KAL
Sbjct: 61 VIQKYHTVNGHNCEVRKAL 79
Score = 66.7 bits (162), Expect = 6e-15
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68
+K+F+GG+ T L+ +FE +G + + +M D + K RGF F+T+ VD
Sbjct: 3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 62
Query: 69 ARPHTIDSKVVEPKRAV 85
+ HT++ E ++A+
Sbjct: 63 QKYHTVNGHNCEVRKAL 79
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 75.8 bits (186), Expect = 2e-18
Identities = 32/75 (42%), Positives = 44/75 (58%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160
K+F+G L T+E L+EYFGQFGEV ++ + T + RGFGFV + D VDK +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 161 GTHLVKGKKVDVKKA 175
H + K +D K A
Sbjct: 62 SRHELDSKTIDPKVA 76
Score = 72.3 bits (177), Expect = 4e-17
Identities = 35/75 (46%), Positives = 52/75 (69%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+FIGGL ++T+ E L+ +F +G+V + +VM+DP TK+SRGFGF+T+ VD A
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 70 RPHTIDSKVVEPKRA 84
H +DSK ++PK A
Sbjct: 62 SRHELDSKTIDPKVA 76
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 76.2 bits (187), Expect = 3e-18
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 1 ITKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSA 60
++ E R +F L R L+ F A G V DV ++ D +++S+G ++ +
Sbjct: 11 LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEI 70
Query: 61 HMVDDAQAARPHTIDSKVVEPKRAVPRTEINR 92
V A + + + + NR
Sbjct: 71 QSVPLAIGLTGQRLLGVPIIVQASQAEK--NR 100
Score = 73.9 bits (181), Expect = 2e-17
Identities = 21/100 (21%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 81 PKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKK 140
P R P ++ E A + +F L I DL+++F G+V V +++++ + +
Sbjct: 3 PVRE-PVDNLSPEERDA--RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRS 59
Query: 141 RGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEE 180
+G +VE+ + V A + G + V+ + +++
Sbjct: 60 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKN 99
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 75.4 bits (185), Expect = 5e-18
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKE-TGKKRGFGFVEYNDYDPVDKAC 158
K+ V ++ + +++E F FGE+ +V L + TG RGFGFV++ KA
Sbjct: 9 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 68
Query: 159 --LKGTHLVKGKKVDVKKALSKEEM 181
L + + G+++ ++ A S+ +
Sbjct: 69 NALCHSTHLYGRRLVLEWADSEVTV 93
Score = 62.3 bits (151), Expect = 3e-13
Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDP-QTKKSRGFGFITYSSAHMVDDAQ 67
K+ + + ++ + ++ F +G++ V + K T RGFGF+ + + A
Sbjct: 9 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 68
Query: 68 AARPH--TIDSKVVEPKRAVPRTEI 90
A H + + + + A +
Sbjct: 69 NALCHSTHLYGRRLVLEWADSEVTV 93
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 67.6 bits (165), Expect = 2e-15
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC-- 158
L+VG L D+TE L E F G + S+ + + T + G+ +V + ++A
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 159 LKGTHLVKGKKVDVKKA 175
+ + KGK V + +
Sbjct: 62 MNFDVI-KGKPVRIMWS 77
Score = 56.9 bits (137), Expect = 2e-11
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
L++G L + L F G ++ + V +D T++S G+ ++ + DA+ A
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ---PADAERA 58
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 67.4 bits (164), Expect = 3e-15
Identities = 34/75 (45%), Positives = 45/75 (60%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160
K+FVG L + T ED+K YF QFG+V L+ +K T + RGFGFV + D V+K C
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
Query: 161 GTHLVKGKKVDVKKA 175
H + K V+ KKA
Sbjct: 61 HFHEINNKMVECKKA 75
Score = 65.1 bits (158), Expect = 2e-14
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
K+F+GGL T+ E +K +FE +G V D ++M D T + RGFGF+T+ S +V+
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
Query: 70 RPHTIDSKVVEPKRA 84
H I++K+VE K+A
Sbjct: 61 HFHEINNKMVECKKA 75
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 65.0 bits (158), Expect = 2e-14
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC-- 158
KLF+G L + + ++ +KE FG + + LV + TG +G+ F EY D + D+A
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 159 LKGTHLVKGKKVDVKKALSKEEMA 182
L G L KK+ V++A + A
Sbjct: 63 LNGMQL-GDKKLLVQRASVGAKNA 85
Score = 60.8 bits (147), Expect = 9e-13
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA-Q 67
KLFIGGL + + +K ++G + ++KD T S+G+ F Y ++ D A
Sbjct: 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 68 AARPHTIDSKVVEPKRAVPRTE 89
+ K + +RA +
Sbjct: 62 GLNGMQLGDKKLLVQRASVGAK 83
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 65.5 bits (159), Expect = 3e-14
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 90 INRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYN 149
++ + T K+FVG L T+ L++YF FG++ ++T+++TGK RG+GFV
Sbjct: 1 MHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 150 DYDPVDKACLKGTHLVKGKKVDVKKALSKEEMAKLKTRGGFGG 192
D ++AC ++ G+K +V A + L + GF
Sbjct: 61 DRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSL--QTGFAI 101
Score = 59.8 bits (144), Expect = 4e-12
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 2 TKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAH 61
+++ K+F+GGL Y T+ +L+ +FE +GD+ + VV+ D QT KSRG+GF+T +
Sbjct: 4 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 63
Query: 62 MVDDAQAARPHTIDSKVVEPKRAVPRTEINRPEAG 96
+ A ID + A + + G
Sbjct: 64 AAERACKDPNPIIDGRKANVNLAYLGAKPRSLQTG 98
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 63.5 bits (154), Expect = 8e-14
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 102 LFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKE---TGKKRGFGFVEYNDYDPVDKAC 158
LF+ +L TEE LK F + G + S + +K GFGFVEY + KA
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 159 --LKGTHLVKGKKVDVKKALSKEEMA 182
L+G H V G K++V+ + + A
Sbjct: 61 KQLQG-HTVDGHKLEVRISERATKPA 85
Score = 52.3 bits (125), Expect = 9e-10
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 11 LFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDP---QTKKSRGFGFITYSSAHMVDDA- 66
LFI L++ T+ ETLK F G + + K S GFGF+ Y A
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 67 QAARPHTIDSKVVEPKRAVPRT 88
+ + HT+D +E + + T
Sbjct: 61 KQLQGHTVDGHKLEVRISERAT 82
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 63.1 bits (153), Expect = 2e-13
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYD 152
PE + L++ +L IT E++ + FG++G + + T + RG +V Y D
Sbjct: 4 PEVN---RILYIRNLPYKITAEEMYDIFGKYGPIRQ---IRVGNTPETRGTAYVVYEDIF 57
Query: 153 PVDKAC--LKGTHLVKGKKVDVKKALSKEEMAKLKTR 187
AC L G ++ + + V + K+ T+
Sbjct: 58 DAKNACDHLSGFNV-CNRYLVVLYYNANRAFQKMDTK 93
Score = 55.8 bits (134), Expect = 1e-10
Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 15/118 (12%)
Query: 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVD 64
PE R L+I L Y+ ++E + F +G + ++ T ++RG ++ Y
Sbjct: 4 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ---IRVGNTPETRGTAYVVYEDIFDAK 60
Query: 65 DA-QAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFG 121
+A + ++ + + + ++L + LKE +G
Sbjct: 61 NACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQL-----------KLLKEKYG 107
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 62.1 bits (150), Expect = 4e-13
Identities = 15/81 (18%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVAL-----VTEKETGKKRGFGFVEYNDYDPV 154
++L+VG++ ITEE + ++F + + V + + + F F+E+ D
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 61
Query: 155 DKACLKGTHLVKGKKVDVKKA 175
+A + +G+ + +++
Sbjct: 62 TQAMAFDGIIFQGQSLKIRRP 82
Score = 61.3 bits (148), Expect = 7e-13
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVV-----MKDPQTKKSRGFGFITYSSAHMV 63
R+L++G + + + E + F A + + + Q + + F F+ + S
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 61
Query: 64 DDAQAARPHTIDSKVVEPKRAVPRTEINRP 93
A A + ++ +R P P
Sbjct: 62 TQAMAFDGIIFQGQSLKIRR--PHDYQPLP 89
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 61.2 bits (148), Expect = 5e-13
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC-- 158
KL++G+L +T +DL++ FG + + K G+ FV+Y D + +A
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLA------GQVLLKSGYAFVDYPDQNWAIRAIET 56
Query: 159 LKGTHLVKGKKVDVKKALSKEE 180
L G + GK ++V ++SK+
Sbjct: 57 LSGKVELHGKIMEVDYSVSKKL 78
Score = 51.2 bits (122), Expect = 2e-09
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
KL+IG L +++ L+ F + V+ G+ F+ Y + A
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK------SGYAFVDYPDQNWAIRAIET 56
Query: 70 --RPHTIDSKVVEPKRAVPRTE 89
+ K++E +V +
Sbjct: 57 LSGKVELHGKIMEVDYSVSKKL 78
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 61.6 bits (149), Expect = 5e-13
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 97 ATVK--KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPV 154
A+++ L+V L +T+++L++ F Q+G + + ++ ++ TG RG GF+ ++
Sbjct: 2 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 61
Query: 155 DKAC--LKGTHL-VKGKKVDVKKA 175
++A L G + + VK A
Sbjct: 62 EEAIKGLNGQKPSGATEPITVKFA 85
Score = 52.4 bits (125), Expect = 1e-09
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA 66
L++ GL + + L+ F +G ++ ++ D T SRG GFI + ++A
Sbjct: 7 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 64
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 60.8 bits (147), Expect = 9e-13
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKA 157
T + L+VG L +++ ++ L F FG++T + + + ET K RGF FVE+ + A
Sbjct: 4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 63
Query: 158 C--LKGTHLVKGKKVDVKKALSKEE 180
+ + L G+ + V A
Sbjct: 64 IDNMNESEL-FGRTIRVNLAKPMRI 87
Score = 59.7 bits (144), Expect = 3e-12
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA-Q 67
R L++GGL + L + F +GD+ D+ + D +T+K RGF F+ + A A
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 68 AARPHTIDSKVVEPKRAVPR 87
+ + + A P
Sbjct: 66 NMNESELFGRTIRVNLAKPM 85
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 60.8 bits (147), Expect = 1e-12
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC-- 158
++VG L + ++E L E F Q G V + + ++ TG+ +G+GFVE+ + D A
Sbjct: 11 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 70
Query: 159 LKGTHLVKGKKVDVKKALSKEE 180
+ L GK + V KA + +
Sbjct: 71 MDMIKL-YGKPIRVNKASAHNK 91
Score = 56.2 bits (135), Expect = 4e-11
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
E +++GGLD + S L F G VV+ + KD T + +G+GF+ + S
Sbjct: 4 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 63
Query: 63 VDDA-QAARPHTIDSKVVEPKRAVPRTE 89
D A + + K + +A +
Sbjct: 64 ADYAIKIMDMIKLYGKPIRVNKASAHNK 91
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 60.5 bits (146), Expect = 1e-12
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 102 LFVGSLRDDITEEDLKEYFGQFGEVTSVALV-TEKETGKKRGFGFVEYNDYDPVDKACLK 160
+F+G+L +I E+ L + F FG + + + +TG +G+ F+ + +D D A
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 161 GT-HLVKGKKVDVKKALSKEE 180
+ + + V A K+
Sbjct: 61 MNGQYLCNRPITVSYAFKKDS 81
Score = 55.5 bits (133), Expect = 6e-11
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 11 LFIGGLDYRTSSETLKSHFEAWGDV-VDVVVMKDPQTKKSRGFGFITYSSAHMVDDA-QA 68
+FIG LD + L F A+G + +M+DP T S+G+ FI ++S D A +A
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 69 ARPHTIDSKVVEPKRAVPRTE 89
+ ++ + A +
Sbjct: 61 MNGQYLCNRPITVSYAFKKDS 81
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 60.4 bits (146), Expect = 1e-12
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC-- 158
L+V +L IT++ L FG++G + ++ +K TG+ RG FV YN + +A
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 67
Query: 159 LKGTHL-VKGKKVDVKKA 175
L + + V+ A
Sbjct: 68 LNNVIPEGGSQPLSVRLA 85
Score = 52.6 bits (126), Expect = 7e-10
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68
L++ L + + L + F +G +V +++D T + RG F+ Y+ ++AQ
Sbjct: 7 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNK---REEAQE 63
Query: 69 A 69
A
Sbjct: 64 A 64
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 60.4 bits (146), Expect = 2e-12
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC- 158
L+VG+L TEE + E F + G++ + + +K GF FVEY + A
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 67
Query: 159 -LKGTHLVKGKKVDVKKALSKEE 180
+ GT L + + +E
Sbjct: 68 YINGTRL-DDRIIRTDWDAGFKE 89
Score = 52.6 bits (126), Expect = 1e-09
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA-Q 67
L++G L + T+ E + F GD+ +++ D K + GF F+ Y S ++A +
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 67
Query: 68 AARPHTIDSKVVEPKRAVPRTE 89
+D +++ E
Sbjct: 68 YINGTRLDDRIIRTDWDAGFKE 89
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 59.3 bits (143), Expect = 3e-12
Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYD 152
+ ++VK L+V +L +EE +++ F + K R + FV +++ +
Sbjct: 2 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKP------GAVERVKKIRDYAFVHFSNRE 55
Query: 153 PVDKAC--LKGTHLVKGKKVDVKKALSKE 179
+A L G ++ G ++V A +
Sbjct: 56 DAVEAMKALNG-KVLDGSPIEVTLAKPVD 83
Score = 53.9 bits (129), Expect = 3e-10
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA-Q 67
+ L++ L TS E ++ F + KK R + F+ +S+ +A +
Sbjct: 9 KILYVRNLMLSTSEEMIEKEFNNIKPG------AVERVKKIRDYAFVHFSNREDAVEAMK 62
Query: 68 AARPHTIDSKVVEPKRAVPR 87
A +D +E A P
Sbjct: 63 ALNGKVLDGSPIEVTLAKPV 82
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 59.4 bits (143), Expect = 4e-12
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 80 EPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGK 139
E R +P + G K L++ +L +TE DL F +F E + TG+
Sbjct: 1 EEIRKIPM--FSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGR 58
Query: 140 KRGFGFVEYNDYDPVDKAC--LKGTHLVKGKKVDVKKALSKEE 180
RG F+ + + + +A + G L GK + ++ +K++
Sbjct: 59 MRGQAFITFPNKEIAWQALHLVNGYKL-YGKILVIEFGKNKKQ 100
Score = 49.8 bits (118), Expect = 1e-08
Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA-Q 67
+ L++ L R + L S F + + + T + RG FIT+ + + A
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALH 78
Query: 68 AARPHTIDSKVVEPKRAVPRTE 89
+ + K++ + + +
Sbjct: 79 LVNGYKLYGKILVIEFGKNKKQ 100
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 59.3 bits (143), Expect = 5e-12
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVA--LVTEKETGKKRGFGFVEYNDYDPVDKAC 158
+LF+G + E++ E + E + + K RGF FVEY + A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 159 LK---GTHLVKGKKVDVKKALSKEE-----MAK 183
K G + G ++ V A + + M
Sbjct: 63 RKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET 95
Score = 57.4 bits (138), Expect = 2e-11
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVV--VMKDPQTKKSRGFGFITYSSAHMVDDAQ 67
+LFIGG+ E + + V V K+RGF F+ Y S A+
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 68 AA---RPHTIDSKVVEPKRAVPRTEINRPEAGATV 99
+ + A P +++ + TV
Sbjct: 63 RKLMPGRIQLWGHQIAVDWAEPEIDVD-EDVMETV 96
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 58.4 bits (141), Expect = 6e-12
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC-- 158
KL V +L +++ D++E F +FG + A+ +G+ G V + KA
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY-DRSGRSLGTADVHFERKADALKAMKQ 60
Query: 159 LKGTHLVKGKKVDVKKALS 177
G L G+ ++++ S
Sbjct: 61 YNGVPL-DGRPMNIQLVTS 78
Score = 47.6 bits (113), Expect = 4e-08
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
KL + LD+ S ++ F +G + V ++ +S G + + DA A
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY-DRSGRSLGTADVHFER---KADALKA 57
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 58.7 bits (141), Expect = 8e-12
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKA-- 157
K +F+ +L D EE L E QFG++ V +V +T +G F ++ + K
Sbjct: 9 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 68
Query: 158 -----CLKGTHLVKGKKVDVKKALSKEEMA 182
G + G+++ V A++++E A
Sbjct: 69 AASLEAEGGGLKLDGRQLKVDLAVTRDEAA 98
Score = 56.4 bits (135), Expect = 4e-11
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 1 ITKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSA 60
+ + + +FI L + + E L + +GD+ V V+ P T+ S+G F + +
Sbjct: 1 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQ 60
Query: 61 HMVDDAQAARPH-------TIDSKVVEPKRAVPRTE 89
AA +D + ++ AV R E
Sbjct: 61 EAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDE 96
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 58.2 bits (140), Expect = 9e-12
Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA-Q 67
KLF+GGL + T+ ++L+ F +G + +VVV+KD +T++SRGFGF+T+ + DA
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65
Query: 68 AARPHTIDSKVVEPKRAVPRTEINR 92
A ++D + + +A ++ NR
Sbjct: 66 AMNGKSVDGRQIRVDQAGKSSD-NR 89
Score = 56.3 bits (135), Expect = 4e-11
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC-- 158
KLFVG L D E+ L++ F ++G+++ V +V ++ET + RGFGFV + + D A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 159 LKGTHLVKGKKVDVKKALSKEE 180
+ G V G+++ V +A +
Sbjct: 67 MNG-KSVDGRQIRVDQAGKSSD 87
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 57.7 bits (139), Expect = 1e-11
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC-- 158
L V L D+T+ +L F G + + ++ + +TG G+ FV++ +A
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 159 LKGTHLVKGKKVDVKKA 175
L G + + K++ V A
Sbjct: 64 LNGITV-RNKRLKVSYA 79
Score = 47.3 bits (112), Expect = 5e-08
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA-QA 68
L + L + L + F A G + +M+D +T S G+ F+ ++S A +
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 69 ARPHTIDSKVVEPKRAVP 86
T+ +K ++ A P
Sbjct: 64 LNGITVRNKRLKVSYARP 81
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 57.8 bits (139), Expect = 2e-11
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYD 152
E+ +T K+L V ++ + DL++ FGQFG++ V ++ + K FGFV + +
Sbjct: 5 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG--FGFVTFENSA 62
Query: 153 PVDKAC--LKGTHLVKGKKVDVKKALSK 178
D+A L GT + +G+K++V A ++
Sbjct: 63 DADRAREKLHGTVV-EGRKIEVNNATAR 89
Score = 53.9 bits (129), Expect = 3e-10
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 2 TKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAH 61
++ ++L + + +R L+ F +G ++DV ++ + + S+GFGF+T+ ++
Sbjct: 5 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSA 62
Query: 62 MVDDA-QAARPHTIDSKVVEPKRAVPRTEIN 91
D A + ++ + +E A R N
Sbjct: 63 DADRAREKLHGTVVEGRKIEVNNATARVMTN 93
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 57.4 bits (138), Expect = 2e-11
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 99 VKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC 158
V +F+ +L I + L + F FG + S +V ++ K +GFV + + ++A
Sbjct: 8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG--YGFVHFETQEAAERAI 65
Query: 159 --LKGTHLVKGKKVDVKKALSKEE 180
+ G L +KV V + S++E
Sbjct: 66 EKMNGMLL-NDRKVFVGRFKSRKE 88
Score = 52.0 bits (124), Expect = 2e-09
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA-QA 68
+FI LD ++ L F A+G+++ V+ D S+G+GF+ + + + A +
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 67
Query: 69 ARPHTIDSKVVEPKRAVPRTE 89
++ + V R R E
Sbjct: 68 MNGMLLNDRKVFVGRFKSRKE 88
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 57.1 bits (137), Expect = 3e-11
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALV--------TEKETGKKRGFG 144
P+ + ++V L D +T +DL ++F Q G V +KETGK +G
Sbjct: 2 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDA 61
Query: 145 FVEYNDYDPVDKAC--LKGTHLVKGKKVDVKKALSKEEM 181
V Y D A G +G K+ V A K M
Sbjct: 62 TVSYEDPPTAKAAVEWFDGKDF-QGSKLKVSLARKKPPM 99
Score = 50.2 bits (119), Expect = 9e-09
Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVV--------MKDPQTKKSRGFGFITYSSA 60
+++ GL+ + + L F+ G V D +T K +G ++Y
Sbjct: 9 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP 68
Query: 61 HMVDDA-QAARPHTIDSKVVEPKRAVPRTEIN 91
A + ++ A + +N
Sbjct: 69 PTAKAAVEWFDGKDFQGSKLKVSLARKKPPMN 100
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 56.2 bits (135), Expect = 4e-11
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC- 158
+ V +L +D E DL+E F FG ++ + L +K TG+ +GF F+ ++ + +A
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 68
Query: 159 -LKGTHLVKGKKVDVKKALSKE 179
+ G ++V+ A
Sbjct: 69 GVSGFGY-DHLILNVEWAKPST 89
Score = 53.9 bits (129), Expect = 3e-10
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
+ + + + L T L+ F +G + + + KD T +S+GF FI++
Sbjct: 3 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 62
Query: 63 VDDA-QAARPHTIDSKVVEPKRAVPRT 88
A D ++ + A P T
Sbjct: 63 AARAIAGVSGFGYDHLILNVEWAKPST 89
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 55.9 bits (134), Expect = 5e-11
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC-- 158
L V L ++T+E+ + FG GE+ S LV +K TG+ G+GFV Y D +KA
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 159 LKGTHLVKGKKVDVKKA 175
L G L + K + V A
Sbjct: 64 LNGLRL-QTKTIKVSYA 79
Score = 46.3 bits (109), Expect = 1e-07
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA-Q 67
L + L + E +S F + G++ +++D T +S G+GF+ Y + A
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 68 AARPHTIDSKVVEPKRAVP 86
+ +K ++ A P
Sbjct: 63 TLNGLRLQTKTIKVSYARP 81
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 56.2 bits (135), Expect = 5e-11
Identities = 16/89 (17%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 100 KKLFVGSLRDDITEEDLKE-YFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC 158
+++ +L + I +++LK+ F + + + K RG FV + + A
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNAL 63
Query: 159 --LKGTHLVKGKKVDVKKALSKEEM-AKL 184
++G K + ++ A + ++ AK+
Sbjct: 64 RSMQGFPF-YDKPMRIQYAKTDSDIIAKM 91
Score = 47.4 bits (112), Expect = 8e-08
Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAW-GDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA- 66
++I L+ + + LK A ++ + ++ K RG F+ + +A
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNAL 63
Query: 67 QAARPHTIDSKVVEPKRAVPRTEI 90
++ + K + + A ++I
Sbjct: 64 RSMQGFPFYDKPMRIQYAKTDSDI 87
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 56.1 bits (135), Expect = 5e-11
Identities = 14/90 (15%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 94 EAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDP 153
++ ++ G + +T++ +++ F FG++ + + ++G+ FV ++ ++
Sbjct: 13 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHES 66
Query: 154 VDKAC--LKGTHLVKGKKVDVKKALSKEEM 181
A + GT + +G V +M
Sbjct: 67 AAHAIVSVNGTTI-EGHVVKCYWGKESPDM 95
Score = 45.3 bits (107), Expect = 4e-07
Identities = 12/72 (16%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA-Q 67
++ GG+ + + ++ F +G ++++ V + + F+ +S+ A
Sbjct: 19 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFSTHESAAHAIV 72
Query: 68 AARPHTIDSKVV 79
+ TI+ VV
Sbjct: 73 SVNGTTIEGHVV 84
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 56.3 bits (135), Expect = 6e-11
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYD 152
P +++ +FVG++ + TEE LK+ F + G V S LV ++ETGK +G+GF EY D +
Sbjct: 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 61
Query: 153 PVDKAC--LKGTHLVKGKKVDVKKALSKEEMAKLKTRGG 189
A L G G+ + V A S++ +LK+ G
Sbjct: 62 TALSAMRNLNGREF-SGRALRVDNAASEKNKEELKSLGT 99
Score = 44.7 bits (105), Expect = 7e-07
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
LR +F+G + Y + E LK F G VV ++ D +T K +G+GF Y
Sbjct: 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 62
Query: 63 VDDA-QAARPHTIDSKVVEPKRAVPRTE 89
A + + + A
Sbjct: 63 ALSAMRNLNGREFSGRALRVDNAASEKN 90
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 55.8 bits (134), Expect = 7e-11
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACL 159
+FVG D+TE++L+E+F Q+G+V V R F FV + D C
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDV-----FIPKPFRAFAFVTFADDQIAQSLCG 60
Query: 160 KGTHLVKGKKVDVKKALSKEEMAKLKTRG 188
+ ++KG V + A K + G
Sbjct: 61 ED-LIIKGISVHISNAEPKHNSNSGPSSG 88
Score = 53.1 bits (127), Expect = 5e-10
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68
+F+G + + L+ F +GDV+DV + K + F F+T++ +
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFR-----AFAFVTFADDQIAQSL-C 59
Query: 69 ARPHTIDSKVVEPKRAVPRTEINRPEAG 96
I V A P+ N +
Sbjct: 60 GEDLIIKGISVHISNAEPKHNSNSGPSS 87
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 53.9 bits (129), Expect = 3e-10
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC- 158
+ L+VG+L D+TE + + F Q G S ++TE + FVE+ ++ A
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALA 66
Query: 159 -LKGTHLVKGKKVDVKKALSKEE 180
+ G + GK+V V A +
Sbjct: 67 AMNGRKI-LGKEVKVNWATTPSS 88
Score = 45.4 bits (107), Expect = 3e-07
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 3/87 (3%)
Query: 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMV 63
+ R L++G L + + F G ++ + + + F+ +
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDA 61
Query: 64 DDA-QAARPHTIDSKVVEPKRAVPRTE 89
A A I K V+ A +
Sbjct: 62 AAALAAMNGRKILGKEVKVNWATTPSS 88
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 52.9 bits (126), Expect = 5e-10
Identities = 9/77 (11%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDK--AC 158
L++ + T+ ++++ V + R F +++ +
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 159 LKGTHLVKGKKVDVKKA 175
L G + +G + K +
Sbjct: 63 LNGLKI-EGYTLVTKVS 78
Score = 46.7 bits (110), Expect = 9e-08
Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVD-DAQ 67
L++ + ++ + V + + + SR F +I +S +
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 61
Query: 68 AARPHTIDSKVVEPKRAVP 86
I+ + K + P
Sbjct: 62 KLNGLKIEGYTLVTKVSNP 80
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 52.5 bits (125), Expect = 6e-10
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160
+ V +L + + +YF G + V + K F +E+ YD A K
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVA--DSLKKNFRFARIEFARYDGALAAITK 59
Query: 161 GTHLVKGKKVDVKKA 175
+V ++ V
Sbjct: 60 THKVVGQNEIIVSHL 74
Score = 48.3 bits (114), Expect = 2e-08
Identities = 8/75 (10%), Positives = 21/75 (28%), Gaps = 2/75 (2%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
+ + L + + +F+ G ++ V V + F I ++ A
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFR--FARIEFARYDGALAAITK 59
Query: 70 RPHTIDSKVVEPKRA 84
+ +
Sbjct: 60 THKVVGQNEIIVSHL 74
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 53.7 bits (128), Expect = 6e-10
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 3/105 (2%)
Query: 81 PKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKK 140
P + EAG V ++ L + + + ++F + V + GK
Sbjct: 3 PSGQKRSRSRSPHEAGFCV---YLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKA 59
Query: 141 RGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMAKLK 185
G GFVE+ + A + + + + V K + K+
Sbjct: 60 TGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKID 104
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 54.1 bits (129), Expect = 7e-10
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 17/136 (12%)
Query: 65 DAQAARPHTIDSKVVEPKRAVPRTEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFG 124
AQ + + + P + P ++ R L V + + E L++ F ++G
Sbjct: 16 TAQLQQLQQQQQQHIPPTQMNPEPDVLR--------NLMVNYIPTTVDEVQLRQLFERYG 67
Query: 125 EVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC--LKGTHLVKGKKVDVKKALSKEEMA 182
+ SV +V ++ET + RG+GFV++ +A L G ++ K++ V A S +
Sbjct: 68 PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI-LNKRLKVALAASGHQ-- 124
Query: 183 KLKTRGGFGGNQGGGD 198
R G G G G+
Sbjct: 125 ----RPGIAGAVGDGN 136
Score = 48.0 bits (113), Expect = 1e-07
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 1 ITKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSA 60
+ EP+ LR L + + L+ FE +G + V ++ D +T++SRG+GF+ + S
Sbjct: 35 MNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSG 94
Query: 61 HMVDDA-QAARPHTIDSKVVEPKRAVPRTEINRPEAGATVK 100
A I +K ++ A + RP V
Sbjct: 95 SSAQQAIAGLNGFNILNKRLKVALAASGHQ--RPGIAGAVG 133
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 52.7 bits (126), Expect = 1e-09
Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 88 TEINRPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVE 147
+ + + V + + D+ EE E ++GEV + + + G +V+
Sbjct: 16 SSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVC-DNLGDHLVGNVYVK 74
Query: 148 YNDYDPVDKAC--LKGTHLVKGKKVDVK 173
+ + +KA L G+ + +
Sbjct: 75 FRREEDAEKAVIDLNNRWF-NGQPIHAE 101
Score = 36.6 bits (84), Expect = 5e-04
Identities = 7/63 (11%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 7 HLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA 66
+ + + E E +G+V ++ V + G ++ + + A
Sbjct: 26 AVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKA 84
Query: 67 QAA 69
Sbjct: 85 VID 87
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 52.7 bits (126), Expect = 1e-09
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKA 157
V ++ V +L +T + L + F +FG V + T+ + ++Y D A
Sbjct: 6 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHA 61
Query: 158 C--LKGTHL-VKGKKVDVKKALSKE 179
L G ++ + + +
Sbjct: 62 KLSLDGQNIYNACCTLRIDFSKLTS 86
Score = 47.3 bits (112), Expect = 9e-08
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVD 64
+ ++ + L Y + + L F +G V+ ++ ++ + Y+
Sbjct: 4 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYAD---PV 56
Query: 65 DAQAA 69
AQ A
Sbjct: 57 SAQHA 61
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 52.1 bits (124), Expect = 1e-09
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 9 RKLFIGGLDYRTSSE-TLKSHFEAWGDV-VDVVVMKDPQTKKSRGFGFITYSSAHMVDDA 66
R++ I L E L+ FE +G + + + + F+ + + + A
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 64
Query: 67 QAARPHTIDSKVVEPKRAVPR 87
+ ++ + A +
Sbjct: 65 LQMNRSLLGNREISVSLADKK 85
Score = 50.9 bits (121), Expect = 3e-09
Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 100 KKLFVGSLRDDITEED-LKEYFGQFGEVTSVALVTE-KETGKKRGFGFVEYNDYDPVDKA 157
+++ + +L ++ +E+ L+E F FG + + + KE F+ + + D ++A
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 64
Query: 158 CLKGTHLVKGKKVDVKKALSK 178
L+ +++ V A K
Sbjct: 65 LQMNRSLLGNREISVSLADKK 85
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 52.4 bits (125), Expect = 2e-09
Identities = 21/89 (23%), Positives = 37/89 (41%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACL 159
F+G+L D+TEE +KE+F + +GFG+ E+ D D + A
Sbjct: 16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 75
Query: 160 KGTHLVKGKKVDVKKALSKEEMAKLKTRG 188
+ K++ V A ++ + G
Sbjct: 76 LNEESLGNKRIRVDVADQAQDKDSGPSSG 104
Score = 47.0 bits (111), Expect = 1e-07
Identities = 13/84 (15%), Positives = 32/84 (38%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68
F+G L Y + E++K F + + ++ +GFG+ + + A +
Sbjct: 16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 75
Query: 69 ARPHTIDSKVVEPKRAVPRTEINR 92
++ +K + A + +
Sbjct: 76 LNEESLGNKRIRVDVADQAQDKDS 99
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 51.2 bits (122), Expect = 2e-09
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMV 63
P+ L + GL T+ L+ F +G + DV ++ D Q+++SRGF F+ + +
Sbjct: 5 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDA 64
Query: 64 DDA-QAARPHTIDSKVVE 80
+A + A +D + +
Sbjct: 65 KEAKERANGMELDGRRIR 82
Score = 51.2 bits (122), Expect = 2e-09
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC- 158
L V L TE DL+E F ++G + V++V ++++ + RGF FV + + D +A
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 69
Query: 159 -LKGTHLVKGKKVDV 172
G L G+++ V
Sbjct: 70 RANGMEL-DGRRIRV 83
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 51.6 bits (123), Expect = 3e-09
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC-- 158
LF+ L + ++DL + F FG V S + +K+T + FGFV Y++ A
Sbjct: 20 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 79
Query: 159 LKGTHLVKGKKVDVKKALSKEE 180
+ G + K++ V+ SK +
Sbjct: 80 MNGFQI-GMKRLKVQLKRSKND 100
Score = 47.8 bits (113), Expect = 6e-08
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
KE LFI L + L F +G+VV V D QT S+ FGF++Y +
Sbjct: 13 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVS 72
Query: 63 VDDA-QAARPHTIDSKVVEPKRAVPRTE 89
A Q+ I K ++ + + +
Sbjct: 73 AQAAIQSMNGFQIGMKRLKVQLKRSKND 100
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 50.3 bits (120), Expect = 4e-09
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC-- 158
+LFVG+L DITEE++++ F ++G+ V K +GFGF+ + A
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYGKAGEV------FIHKDKGFGFIRLETRTLAEIAKVE 63
Query: 159 LKGTHLVKGKKVDVKKALSK 178
L L +GK++ V+ A
Sbjct: 64 LDNMPL-RGKQLRVRFACHS 82
Score = 41.5 bits (97), Expect = 8e-06
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68
+LF+G L + E ++ FE +G +V + KD FGFI + + + A+
Sbjct: 9 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLAEIAKV 62
Query: 69 ARP-HTIDSKVVEPKRAVPRTEI 90
+ K + + A +
Sbjct: 63 ELDNMPLRGKQLRVRFACHSASL 85
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 50.6 bits (121), Expect = 5e-09
Identities = 16/93 (17%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 91 NRPEAGATVKKLFVGSL-RDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYN 149
+ + + ++F+G+L + + D++ F ++G++ ++ +GF FV+Y
Sbjct: 7 GKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV--------HKGFAFVQYV 58
Query: 150 DYDPVDKAC--LKGTHLVKGKKVDVKKALSKEE 180
+ A G + G+ +D+ A +
Sbjct: 59 NERNARAAVAGEDGRMI-AGQVLDINLAAEPKV 90
Score = 41.4 bits (97), Expect = 1e-05
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 10/83 (12%)
Query: 9 RKLFIGGLD-YRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA- 66
++FIG L+ +++ F +G +V V +GF F+ Y + A
Sbjct: 16 SRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH--------KGFAFVQYVNERNARAAV 67
Query: 67 QAARPHTIDSKVVEPKRAVPRTE 89
I +V++ A
Sbjct: 68 AGEDGRMIAGQVLDINLAAEPKV 90
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 50.6 bits (120), Expect = 6e-09
Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACL 159
+ ++ IT+ D+ ++ + V G+ G V++ + D K+
Sbjct: 9 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER 68
Query: 160 KGTHLVKGKKVDVKKALSKEEMAKLKTRGGFGGNQG 195
+ G++ V + E+M +++ G G
Sbjct: 69 LHRKKLNGREAFVHVV-TLEDMREIEKNPPAQGKSG 103
Score = 45.6 bits (107), Expect = 4e-07
Identities = 8/92 (8%), Positives = 23/92 (25%), Gaps = 4/92 (4%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68
I + + + + E + V + + G + + + ++
Sbjct: 9 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER 68
Query: 69 ARPHTIDSKVVEPKRAVP----RTEINRPEAG 96
++ + E N P G
Sbjct: 69 LHRKKLNGREAFVHVVTLEDMREIEKNPPAQG 100
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 50.0 bits (119), Expect = 8e-09
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC- 158
+ L +L +ITE++LKE F E+ V + GK +G ++E+ +K
Sbjct: 17 RTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLE 71
Query: 159 -LKGTHLVKGKKVDVKKALSK 178
+G + G+ V + K
Sbjct: 72 EKQGAEI-DGRSVSLYYTGEK 91
Score = 45.4 bits (107), Expect = 4e-07
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 2 TKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAH 61
+K+ R L L + + + LK FE + + Q KS+G +I + S
Sbjct: 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALE-----IRLVSQDGKSKGIAYIEFKSEA 64
Query: 62 MVDDA-QAARPHTIDSKVVEPKRAVPR 87
+ + + ID + V +
Sbjct: 65 DAEKNLEEKQGAEIDGRSVSLYYTGEK 91
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 49.7 bits (118), Expect = 1e-08
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACL 159
+LFV +L +EEDL++ F +G ++ + + T K +GF FV + + KA
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68
Query: 160 KGT-HLVKGKKVDVKKALSKEEMAKLKTRGG 189
+ + +G+ + V + K+E ++ G
Sbjct: 69 EVDGQVFQGRMLHVLPSTIKKEASQSGPSSG 99
Score = 47.0 bits (111), Expect = 1e-07
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA-Q 67
+LF+ L Y +S E L+ F A+G + ++ D TKK +GF F+T+ A
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68
Query: 68 AARPHTIDSKVVEPKRAVPRTEINR 92
+++ + + E ++
Sbjct: 69 EVDGQVFQGRMLHVLPSTIKKEASQ 93
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 49.2 bits (116), Expect = 2e-08
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKA 157
T LF+G+L + + +LK + +A V + TG R FG+V++ + ++KA
Sbjct: 12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLA-VVDVRTGTNRKFGYVDFESAEDLEKA 70
Query: 158 CLKGTHLVKGKKVDVKKALSK 178
V G ++ ++K +
Sbjct: 71 LELTGLKVFGNEIKLEKPKGR 91
Score = 48.8 bits (115), Expect = 2e-08
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMV 63
E LFIG L+ S LK D+ V+ T +R FG++ + SA +
Sbjct: 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR-TGTNRKFGYVDFESAEDL 67
Query: 64 DDAQAARPHTIDSKVVEPKRAVPR 87
+ A + ++ ++ R
Sbjct: 68 EKALELTGLKVFGNEIKLEKPKGR 91
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 48.4 bits (115), Expect = 2e-08
Identities = 13/82 (15%), Positives = 22/82 (26%), Gaps = 8/82 (9%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160
+ V L + F Q+G + + + Y KA K
Sbjct: 6 WVTVFGFPQASASYILLQ-FAQYGNILKH------VMSNTGNWMHIRYQSKLQARKALSK 58
Query: 161 GTHLVKGK-KVDVKKALSKEEM 181
+ + VK + K M
Sbjct: 59 DGRIFGESIMIGVKPCIDKNVM 80
Score = 46.9 bits (111), Expect = 9e-08
Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 8/83 (9%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
+ + G ++S L F +G+++ V+ + I Y S A +
Sbjct: 6 WVTVFGFPQASASYILL-QFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSK 58
Query: 70 RPHTIDSKV-VEPKRAVPRTEIN 91
+ + K + + +
Sbjct: 59 DGRIFGESIMIGVKPCIDKNVME 81
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 48.5 bits (115), Expect = 2e-08
Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68
+ + + + S + + F + + V +K + G + + S A
Sbjct: 10 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 69
Query: 69 ARP-HTIDSKVVEPKRA 84
I S+ V+
Sbjct: 70 DLNDRPIGSRKVKLVLG 86
Score = 46.6 bits (110), Expect = 1e-07
Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160
+ V ++ ++ +++ ++F + + + E G G V + D A +
Sbjct: 11 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 70
Query: 161 GT-HLVKGKKVDVKKA 175
+ +KV +
Sbjct: 71 LNDRPIGSRKVKLVLG 86
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 48.1 bits (114), Expect = 2e-08
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC- 158
L+V D+T L+ F FG + + R FV Y + D+A
Sbjct: 6 NTLYVYGE--DMTPTLLRGAFSPFGNIIDL------SMDPPRNCAFVTYEKMESADQAVA 57
Query: 159 -LKGTHLVKGKKVDVKKA 175
L GT + + ++ V A
Sbjct: 58 ELNGTQV-ESVQLKVNIA 74
Score = 38.9 bits (90), Expect = 4e-05
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 5 PEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVD 64
P L++ G D + L+ F +G+++D+ + F+TY D
Sbjct: 2 PRKGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPR------NCAFVTYEKMESAD 53
Query: 65 DA-QAARPHTIDSKVVEPKRAVPR 87
A ++S ++ A +
Sbjct: 54 QAVAELNGTQVESVQLKVNIARKQ 77
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 47.8 bits (113), Expect = 5e-08
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 102 LFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC--L 159
LFV S+ ++ E++++E F +GE+ ++ L ++ TG +G+ VEY + A L
Sbjct: 10 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 69
Query: 160 KGTHLVKGKKVDVKKALSK 178
G + G+ + V K
Sbjct: 70 NGAEI-MGQTIQVDWCFVK 87
Score = 42.0 bits (98), Expect = 4e-06
Identities = 12/80 (15%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA-Q 67
LF+ + + ++ F +G++ ++ + D +T S+G+ + Y + A +
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 67
Query: 68 AARPHTIDSKVVEPKRAVPR 87
A I + ++ +
Sbjct: 68 ALNGAEIMGQTIQVDWCFVK 87
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 47.4 bits (112), Expect = 5e-08
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACL 159
+ +++ D T +D+KE+ G+V ++ + +G FV ++ + K
Sbjct: 7 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ-MRRTLHKAFKGSIFVVFDSIESAKKFVE 65
Query: 160 KGTHLVKGKKVDVKKA 175
K + +
Sbjct: 66 TPGQKYKETDLLILFK 81
Score = 41.3 bits (96), Expect = 8e-06
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68
R ++I G + + +K E G V++ + M+ K +G F+ + S
Sbjct: 7 RSVYIKGFPTDATLDDIKEWLEDKGQVLN-IQMRRTLHKAFKGSIFVVFDSIESAKKFVE 65
Query: 69 ARPHTIDSKVVEPKRA 84
+
Sbjct: 66 TPGQKYKETDLLILFK 81
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 43.8 bits (103), Expect = 1e-06
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 7/84 (8%)
Query: 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKA 157
L + EDL+ +FG++ + G V + D + D
Sbjct: 18 HPMDFEDDPLVLNEIREDLRVECSKFGQIRKL----LLFDRHPDGVASVSFRDPEEADYC 73
Query: 158 C--LKGTHLVKGKKVDVKKALSKE 179
L G G+++ +
Sbjct: 74 IQTLDGRWF-GGRQITAQAWDGTT 96
Score = 35.7 bits (82), Expect = 0.001
Identities = 6/70 (8%), Positives = 20/70 (28%), Gaps = 11/70 (15%)
Query: 23 ETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAARPH----TIDSKV 78
E L+ +G + +++ G +++ ++A +
Sbjct: 34 EDLRVECSKFGQIRKLLLFDR----HPDGVASVSFRDP---EEADYCIQTLDGRWFGGRQ 86
Query: 79 VEPKRAVPRT 88
+ + T
Sbjct: 87 ITAQAWDGTT 96
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 43.9 bits (103), Expect = 1e-06
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 100 KKLFV--GSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKA 157
+ L V G L + ++ L + G V ++ + + F Y + +A
Sbjct: 19 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDAL------LMPPNKPYSFARYRTTEESKRA 72
Query: 158 C--LKGTHLVKGKKVDVKKALS 177
L G +V + L+
Sbjct: 73 YVTLNGKEVVDDLGQKITLYLN 94
Score = 38.5 bits (89), Expect = 9e-05
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 10/85 (11%)
Query: 4 EPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMV 63
+ GGL S L E G V +++ + + F Y +
Sbjct: 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSFARYRT---T 66
Query: 64 DDAQAARPHTIDSKVVEPKRAVPRT 88
++++ A T++ K V T
Sbjct: 67 EESKRAY-VTLNGKEVVDDLGQKIT 90
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 43.5 bits (102), Expect = 2e-06
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 92 RPEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDY 151
R AG +++VG+L DI +D+++ F ++G + + K F FVE+ D
Sbjct: 7 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRD---IDLKNRRGGPPFAFVEFEDP 63
Query: 152 DPVDKACLKGT-HLVKGKKVDVKKA 175
+ A + G ++ V+
Sbjct: 64 RDAEDAVYGRDGYDYDGYRLRVEFP 88
Score = 37.4 bits (86), Expect = 2e-04
Identities = 10/80 (12%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA-Q 67
++++G L ++ ++ F +G + D+ + F F+ + +DA
Sbjct: 15 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGP---PFAFVEFEDPRDAEDAVY 71
Query: 68 AARPHTIDSKVVEPKRAVPR 87
+ D + +
Sbjct: 72 GRDGYDYDGYRLRVEFPRSG 91
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 43.3 bits (101), Expect = 3e-06
Identities = 14/88 (15%), Positives = 36/88 (40%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLK 160
+ + L ++E++ ++F V + + G+ G FV++ + +KA K
Sbjct: 17 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 76
Query: 161 GTHLVKGKKVDVKKALSKEEMAKLKTRG 188
+ + +++ K+ E + G
Sbjct: 77 HKERIGHRYIEIFKSSRAEVRTSGPSSG 104
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 41.7 bits (97), Expect = 4e-06
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 102 LFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC--L 159
L++ L+ T++DL + +G++ S + +K T K +G+GFV+++ KA L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 160 KGTHLVKGKKV 170
K + + + +
Sbjct: 61 KASGV-QAQMA 70
Score = 38.2 bits (88), Expect = 7e-05
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 11 LFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
L+I GL T+ + L + +G +V + D T K +G+GF+ + S AQ A
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDS---PSAAQKA 56
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 42.0 bits (98), Expect = 5e-06
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKA-- 157
L + ++ ++EEDLK F G V + K R ++ + +A
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ----KDRKMALIQMGSVEEAVQALI 66
Query: 158 CLKGTHLVKGKKVDVKKA 175
L L + + V +
Sbjct: 67 DLHNHDLGENHHLRVSFS 84
Score = 34.3 bits (78), Expect = 0.002
Identities = 13/58 (22%), Positives = 16/58 (27%), Gaps = 4/58 (6%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA 66
L + + S E LK F + G VV K I S A
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK----MALIQMGSVEEAVQA 64
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 41.2 bits (96), Expect = 1e-05
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 10/86 (11%)
Query: 100 KKLFVGSL-RDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKA- 157
+ + + R L + FG +++ K F+E + A
Sbjct: 9 RVVHIMDFQRGKNLRYQLLQLVEPFGVISNH------LILNKINEAFIEMATTEDAQAAV 62
Query: 158 --CLKGTHLVKGKKVDVKKALSKEEM 181
LV GK V V + + +
Sbjct: 63 DYYTTTPALVFGKPVRVHLSQKYKRI 88
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 40.6 bits (94), Expect = 1e-05
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEA---WGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDD 65
+F+ GL R + + E +G + VV+ S+G Y + +D
Sbjct: 9 NLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSED 68
Query: 66 AQAA 69
A A
Sbjct: 69 ALRA 72
Score = 37.9 bits (87), Expect = 1e-04
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 101 KLFVGSLRDDITEEDL---KEYFGQFGEVTSVALVTEKETGK---KRGFGFVEYNDYDPV 154
+FV L + + ++ EYFG+FG++ V + +V Y +
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 155 DKAC--LKGTHLVKGKKVDV 172
+A + + G+ +
Sbjct: 70 LRAIQCVNNVVV-DGRTLKA 88
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 40.9 bits (95), Expect = 2e-05
Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 99 VKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC 158
F G L D EDL F GE+ + V + G + + K
Sbjct: 11 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKE--KAKEALGKAKDA 68
Query: 159 LKGTHLVKGKKVDVKKALSKEEMAKLK 185
G ++ K+V + + E LK
Sbjct: 69 NNGNLQLRNKEVTWEVLEGEVEKEALK 95
Score = 38.2 bits (88), Expect = 2e-04
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 3 KEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHM 62
+E F G LD +T E L F G++ + ++ + +
Sbjct: 6 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIIL----FKEKAKEA 61
Query: 63 VDDAQAARPHTIDSKVVEPKRAVPRTE 89
+ A+ A + + E V E
Sbjct: 62 LGKAKDANNGNLQLRNKEVTWEVLEGE 88
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 37.2 bits (85), Expect = 2e-04
Identities = 9/75 (12%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 102 LFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKACLKG 161
+ + L D+T +++ + + K +G FV + + + A
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYEL-------KYCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 162 T-HLVKGKKVDVKKA 175
++ +++ V+
Sbjct: 54 HQSRLRERELSVQLQ 68
Score = 31.0 bits (69), Expect = 0.026
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 11 LFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAAR 70
+ I GL +++ + + +K K +G F+T + + A
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY-------ELKYCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 71 PHT 73
+
Sbjct: 54 HQS 56
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 36.7 bits (84), Expect = 5e-04
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC-- 158
L++ +L + E++L+ FG+V S + +G RG GF + +
Sbjct: 20 NLYISNLPLSMDEQELENMLKPFGQVIST-RILRDSSGTSRGVGFARMESTEKCEAVIGH 78
Query: 159 LKGTHLVKGKKVDVKKA 175
G +K
Sbjct: 79 FNG-KFIKTPPGVSAPT 94
Score = 35.9 bits (82), Expect = 8e-04
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 2/81 (2%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA-Q 67
L+I L + L++ + +G V + + SRG GF S +
Sbjct: 19 TNLYISNLPLSMDEQELENMLKPFGQ-VISTRILRDSSGTSRGVGFARMESTEKCEAVIG 77
Query: 68 AARPHTIDSKVVEPKRAVPRT 88
I + P
Sbjct: 78 HFNGKFIKTPPGVSAPTEPLL 98
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 35.9 bits (82), Expect = 8e-04
Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 11/63 (17%)
Query: 101 KLFVGSLRDDITEE-----DLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVD 155
L DD+ E + F + + T+ K + +++
Sbjct: 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF------KSFKRVRINFSNPLSAA 60
Query: 156 KAC 158
A
Sbjct: 61 DAR 63
Score = 33.2 bits (75), Expect = 0.009
Identities = 12/86 (13%), Positives = 20/86 (23%), Gaps = 12/86 (13%)
Query: 10 KLFIGGLDYRTSSET-----LKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVD 64
L + SE+ +S F + K I +S+
Sbjct: 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAA 60
Query: 65 DA-QAARPHTIDSKVVEPKRAVPRTE 89
DA K ++ A
Sbjct: 61 DARLRLHKTEFLGKEMKLYFAQTLHI 86
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 34.8 bits (79), Expect = 0.002
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 10/98 (10%)
Query: 93 PEAGATVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYD 152
P + ++ V L + +DLK++ + G+ +K G G VEY +
Sbjct: 9 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGD-------VCYADVQKDGMGMVEYLRKE 61
Query: 153 PVDKAC--LKGTHLVKGKKVDVKKALSKEEMAKLKTRG 188
++ A L T + + + E + + G
Sbjct: 62 DMEYALRKLDDTKF-RSHEGETSYIRVYPERSSGPSSG 98
Score = 25.5 bits (55), Expect = 3.7
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAW 32
++ + GL S + LK H
Sbjct: 16 FRVLVSGLPPSGSWQDLKDHMREA 39
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 35.0 bits (80), Expect = 0.002
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 107 LRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGF--VEYNDYDPVDKA--CLKGT 162
+ ED+++ ++G V S+ + + + G G VE+ KA L G
Sbjct: 22 EEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 81
Query: 163 HLVKGKKVDVKKA 175
+ V K
Sbjct: 82 KF-ANRVVVTKYC 93
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 34.0 bits (77), Expect = 0.004
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 98 TVKKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKA 157
T + + L TE D+ +F + + G+ G VE+ ++ A
Sbjct: 14 TGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEI--GPDGRVTGEADVEFATHEDAVAA 71
Query: 158 CLKGTHLVKGKKVDVKKALSKEEMAKLKTRG 188
K ++ + V++ + + G
Sbjct: 72 MAKDKANMQHRYVELFLNSTAGTSGSGPSSG 102
Score = 32.0 bits (72), Expect = 0.021
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 2/79 (2%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68
+ + GL YR + + + F + + + G + +++ A A
Sbjct: 16 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRV--TGEADVEFATHEDAVAAMA 73
Query: 69 ARPHTIDSKVVEPKRAVPR 87
+ + VE
Sbjct: 74 KDKANMQHRYVELFLNSTA 92
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 32.6 bits (73), Expect = 0.010
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 101 KLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC-- 158
++ V L + +DLK++ + G+ + G G VE+ + + A
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGD-------VCYADVYRDGTGVVEFVRKEDMTYAVRK 54
Query: 159 LKGTHLVKGKKVDVKKALSKEEMAKLKTRG 188
L T + + + K + + + G
Sbjct: 55 LDNTKF-RSHEGETAYIRVKVDGPRSPSYG 83
Score = 29.9 bits (66), Expect = 0.085
Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 13/85 (15%)
Query: 10 KLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQAA 69
++ + GL S + LK H G G + + + A
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREA-------GDVCYADVYRDGTGVVEFVRKEDMTYAVRK 54
Query: 70 ------RPHTIDSKVVEPKRAVPRT 88
R H ++ + K PR+
Sbjct: 55 LDNTKFRSHEGETAYIRVKVDGPRS 79
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 32.1 bits (72), Expect = 0.018
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKA-- 157
+ V L + + E DL E +FG + V ++ K VE+ + D +
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR------QALVEFENIDSAKECVT 69
Query: 158 -CLKGTHLVKGKKVDVKKALSKE 179
+ G++ + SK
Sbjct: 70 FAADVPVYIAGQQAFFNYSTSKR 92
Score = 30.5 bits (68), Expect = 0.082
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 9/61 (14%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68
+ + GL L E +G + V++M + + + + +D A+
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR------QALVEFEN---IDSAKE 66
Query: 69 A 69
Sbjct: 67 C 67
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 31.7 bits (71), Expect = 0.018
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 9/61 (14%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDAQA 68
R L I L + + + +G + + K + F+ + A
Sbjct: 9 RVLHIRKLPGEVTETEVIALGLPFGK------VTNILMLKGKNQAFLEL---ATEEAAIT 59
Query: 69 A 69
Sbjct: 60 M 60
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 31.3 bits (70), Expect = 0.033
Identities = 10/91 (10%), Positives = 27/91 (29%), Gaps = 10/91 (10%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC- 158
+ V +L D +++ + + + + FV + + A
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDLKY-------CYVDRNKRTAFVTLLNGEQAQNAIQ 58
Query: 159 -LKGTHLVKGKKVDVKKALSKEEMAKLKTRG 188
+GK + V+ + + + G
Sbjct: 59 MFHQYSF-RGKDLIVQLQPTDALLCSGPSSG 88
Score = 25.9 bits (56), Expect = 2.7
Identities = 7/81 (8%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQTKKSRGFGFITYSSAHMVDDA-Q 67
+ + L ++ + + + + +K +++ F+T + +A Q
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYD-------LKYCYVDRNKRTAFVTLLNGEQAQNAIQ 58
Query: 68 AARPHTIDSKVVEPKRAVPRT 88
++ K + +
Sbjct: 59 MFHQYSFRGKDLIVQLQPTDA 79
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 29.6 bits (66), Expect = 0.13
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC- 158
+L+VG L + + L F +FG + ++ + K F +++Y D AC
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTI------DHVKGDSFAYIQYESLDAAQAACA 71
Query: 159 -LKGTHL-VKGKKVDVKKALSK 178
++G L +++ V A S
Sbjct: 72 KMRGFPLGGPDRRLRVDFAKSG 93
Score = 28.5 bits (63), Expect = 0.30
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVMKDPQT 46
+L++GGL TS L F+ +G + + +K
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSF 55
>d1ckma1 b.40.4.6 (A:239-327) RNA guanylyltransferase (mRNA capping
enzyme) {Chlorella virus PBCV-1 [TaxId: 10506]}
Length = 89
Score = 27.8 bits (62), Expect = 0.50
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 75 DSKVVE----PKRAVP---RTEINRPEAGATVKKLFVGSLRDDITEEDLKEYF 120
+VE R++ N+ T +K + ++ ++IT ++L + F
Sbjct: 38 KGSIVECGFADGTWKYIQGRSDKNQANDRLTYEKTLL-NIEENITIDELLDLF 89
>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis
[TaxId: 1402]}
Length = 387
Score = 29.4 bits (65), Expect = 0.51
Identities = 16/70 (22%), Positives = 20/70 (28%), Gaps = 1/70 (1%)
Query: 202 NNGGGGWGGGGPGPWDQGGSSWGGNSGGGWGGNSGGGWGGNSGGGWGGNSGGGWGGNSAW 261
G G P G + + W G GW + + G W G SA
Sbjct: 301 GEAGIGVFYWEPAWIPVGPAHRLEKNKALWETY-GSGWATSYAAEYDPEDAGKWFGGSAV 359
Query: 262 GGQGGGGFGG 271
Q F G
Sbjct: 360 DNQALFDFKG 369
Score = 28.3 bits (62), Expect = 1.1
Identities = 11/59 (18%), Positives = 16/59 (27%), Gaps = 2/59 (3%)
Query: 200 WGNNGGGGWGGGGPGPWDQGGSSWGGNSGGGWGGNSGGGWGGNSGGGWGGNSGGGWGGN 258
W G W+ GS W + + G W G G + + G
Sbjct: 314 WIPVGPAHRLEKNKALWETYGSGWATSYAAEYDPEDAGKWFG--GSAVDNQALFDFKGR 370
>d2hdsa1 e.3.1.1 (A:4-361) AMPC beta-Lactamase, class C {Escherichia
coli, cephalosporinase [TaxId: 562]}
Length = 358
Score = 28.5 bits (62), Expect = 0.89
Identities = 7/63 (11%), Positives = 12/63 (19%)
Query: 199 PWGNNGGGGWGGGGPGPWDQGGSSWGGNSGGGWGGNSGGGWGGNSGGGWGGNSGGGWGGN 258
G G P D + + + G GG
Sbjct: 260 GDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGF 319
Query: 259 SAW 261
++
Sbjct: 320 GSY 322
Score = 27.0 bits (58), Expect = 3.4
Identities = 10/86 (11%), Positives = 23/86 (26%), Gaps = 1/86 (1%)
Query: 164 LVKGKKVDVKKALSKEEMAKLKTRGGFGGNQGGGDPWGNNGGGGWGGGGPGPWDQGGSSW 223
+K ++ K ++A+ + QG G + G ++ +
Sbjct: 234 NLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLG-WEMLDWPVNPDSIINGSDNKIALAA 292
Query: 224 GGNSGGGWGGNSGGGWGGNSGGGWGG 249
+ + G GG
Sbjct: 293 RPVKAITPPTPAVRASWVHKTGATGG 318
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 27.2 bits (59), Expect = 1.1
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 100 KKLFVGSLRDDITEEDLKEYFGQFGEVTSVALVTEKETGKKRGFGFVEYNDYDPVDKAC- 158
+ +L +++E F +FG + V + VE+ + KA
Sbjct: 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRV------LLPEGGITAIVEFLEPLEARKAFR 64
Query: 159 -LKGTHLVKGKKVDVKKALSKEEMAKLKTR 187
L + + ++ A A + +
Sbjct: 65 HLAYSK-FHHVPLYLEWAPIGVFGAAPQKK 93
Score = 24.5 bits (52), Expect = 9.0
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 9 RKLFIGGLDYRTSSETLKSHFEAWGDVVDVVVM 41
+ L T + ++ F +G + V++
Sbjct: 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP 43
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 26.7 bits (58), Expect = 1.2
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 2 TKEPEHLRKLFIGGLDYRTSSETLKSHFEAWGDVV 36
T++P + + LF+ L T+ L F +
Sbjct: 3 TEQPPN-QILFLTNLPEETNEMMLSMLFNQFPGFK 36
>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 414
Score = 27.7 bits (60), Expect = 1.9
Identities = 9/31 (29%), Positives = 9/31 (29%), Gaps = 3/31 (9%)
Query: 186 TRGGFGGNQGGGDPWGNNGGGGWGGGGPGPW 216
TR GG G G G GP
Sbjct: 367 TRFTDGGQFGFG---AEIGISTQRFHARGPV 394
>d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA
{Ochrobactrum anthropi [TaxId: 529]}
Length = 367
Score = 26.8 bits (59), Expect = 3.6
Identities = 24/152 (15%), Positives = 41/152 (26%), Gaps = 5/152 (3%)
Query: 136 ETGKKRGFGFVEYNDYDPVDKACLKGTHLVKGKKVDVKKALSKEEMAKLKTRGGFGGNQG 195
G+ G ++E + + + TH + + + + +T
Sbjct: 75 GNGEMTGTHWIE-DGGYFLGPVVITNTHGIGMAHHATVRWMVDRYASTYQTDDFLWIMPV 133
Query: 196 GGDPWGNNGGGGWGGGGPGPWDQGGSSWGGNSGGGWGGNSGGGWGGNSGGGWGGNSGGGW 255
+ + + G D + SG GN GGG G + G GG
Sbjct: 134 VAETY-DGALNDINGFPVTEADVRKALDNVASGPVQEGNCGGGTGMITYGFKGGTGTASR 192
Query: 256 GGNSAWGGQGGGGFGGGYQQSFGGGPMRGGGG 287
G G Q + G G
Sbjct: 193 VVEF---GGRSFTIGALVQANHGQRDWLTIAG 221
>d1onha_ e.3.1.1 (A:) AMPC beta-Lactamase, class C {Enterobacter
cloacae, P99, cephalosporinase [TaxId: 550]}
Length = 363
Score = 26.6 bits (57), Expect = 4.7
Identities = 6/58 (10%), Positives = 11/58 (18%)
Query: 204 GGGGWGGGGPGPWDQGGSSWGGNSGGGWGGNSGGGWGGNSGGGWGGNSGGGWGGNSAW 261
G G P + + + G GG ++
Sbjct: 270 GLGWEMLNWPVEANTVVEGSDSKVALAPLPVAEVNPPAPPVKASWVHKTGSTGGFGSY 327
>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus
[TaxId: 1280]}
Length = 246
Score = 25.7 bits (55), Expect = 7.7
Identities = 15/70 (21%), Positives = 19/70 (27%)
Query: 211 GGPGPWDQGGSSWGGNSGGGWGGNSGGGWGGNSGGGWGGNSGGGWGGNSAWGGQGGGGFG 270
G P + G GNSG G G G +S GGQ G
Sbjct: 154 GYPYNYSAYSLYQSQIEMFNDSQYFGYTEVGNSGSGIFNLKGELIGIHSGKGGQHNLPIG 213
Query: 271 GGYQQSFGGG 280
+ +
Sbjct: 214 VFFNRKISSL 223
>d1vlfm2 c.81.1.1 (M:1-728) Transhydroxylase alpha subunit, AthL
{Pelobacter acidigallici [TaxId: 35816]}
Length = 728
Score = 25.8 bits (55), Expect = 8.6
Identities = 17/93 (18%), Positives = 24/93 (25%), Gaps = 1/93 (1%)
Query: 208 WGGGGPGPWDQGGSSWGGNSGGGWGGNSGGGWGGNSGGGWGGNSGGGWGGNSAWGGQGGG 267
G GG G + + G + G G W G + G G
Sbjct: 349 GGLGGWGGACRASHGIE-WARGMIALATMQGMGKPGSNMWSTTQGVPLDYEFYFPGYAEG 407
Query: 268 GFGGGYQQSFGGGPMRGGGGGGRSGGAPYSGGR 300
G G + S G G++ S
Sbjct: 408 GISGDCENSAAGFKFAWRMFDGKTTFPSPSNLN 440
>d1rqwa_ b.25.1.1 (A:) Thaumatin {Ketemfe (Thaumatococcus daniellii)
[TaxId: 4621]}
Length = 207
Score = 25.4 bits (55), Expect = 9.0
Identities = 17/69 (24%), Positives = 20/69 (28%), Gaps = 3/69 (4%)
Query: 223 WGGNSGGGWGGNSGGGWGGNSGGGWGGNSGGGWGGNSAWG--GQGGGGFGGGYQQSFGGG 280
W S G GG NSG W N G G W G G ++ G
Sbjct: 14 WAAASKGD-AALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSGSGICKTGDCG 72
Query: 281 PMRGGGGGG 289
+ G
Sbjct: 73 GLLRCKRFG 81
>d1tvfa1 b.105.1.2 (A:316-383) Pencillin binding protein 4 (PbpD),
C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Length = 68
Score = 23.7 bits (51), Expect = 9.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 160 KGTHLVKGKKVDVKKAL 176
KG + GKK V+ L
Sbjct: 8 KGEQRINGKKYYVENDL 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.140 0.449
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,296,219
Number of extensions: 68765
Number of successful extensions: 672
Number of sequences better than 10.0: 1
Number of HSP's gapped: 540
Number of HSP's successfully gapped: 252
Length of query: 304
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,240,546
Effective search space: 271679574
Effective search space used: 271679574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.8 bits)