BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16455
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P10735|RT12_DROME 40S ribosomal protein S12, mitochondrial OS=Drosophila melanogaster
GN=tko PE=1 SV=1
Length = 140
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 69/105 (65%), Gaps = 28/105 (26%)
Query: 1 MHMKGPHYKKRPPRQPLLGKPFAKG----------------------------KEMVAYI 32
MH GPH K RPPRQPL GKPFAKG KEMVAYI
Sbjct: 36 MHRSGPHIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRLSTGKEMVAYI 95
Query: 33 PGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
PG GHNLQEHNIVLC+VGR++D+PGVK+K VRGVYDL HVVKK+Q
Sbjct: 96 PGIGHNLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVVKKSQ 140
>sp|Q29RU1|RT12_BOVIN 28S ribosomal protein S12, mitochondrial OS=Bos taurus GN=MRPS12
PE=2 SV=1
Length = 139
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 42/54 (77%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKK 75
+ G+E V +IPGEGHNLQEH++VL + GR +DLPGVK+K VRG YD HV KK
Sbjct: 85 LSTGREAVCFIPGEGHNLQEHHVVLVQGGRTQDLPGVKLKVVRGKYDCGHVQKK 138
>sp|B0RB33|RS12_CLAMS 30S ribosomal protein S12 OS=Clavibacter michiganensis subsp.
sepedonicus (strain ATCC 33113 / JCM 9667) GN=rpsL PE=3
SV=1
Length = 124
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
+ G+E+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ K VRG D V + Q
Sbjct: 57 LSNGQEVTAYIPGEGHNLQEHSMVLVRGGRVKDLPGVRYKIVRGALDTQAVKNRKQ 112
>sp|A5CUB9|RS12_CLAM3 30S ribosomal protein S12 OS=Clavibacter michiganensis subsp.
michiganensis (strain NCPPB 382) GN=rpsL PE=3 SV=1
Length = 124
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
+ G+E+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ K VRG D V + Q
Sbjct: 57 LSNGQEVTAYIPGEGHNLQEHSMVLVRGGRVKDLPGVRYKIVRGALDTQAVKNRKQ 112
>sp|C5CGR9|RS12_KOSOT 30S ribosomal protein S12 OS=Kosmotoga olearia (strain TBF 19.5.1)
GN=rpsL PE=3 SV=1
Length = 124
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 40/56 (71%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
+ G E+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 57 LSNGTEVTAYIPGEGHNLQEHSVVLVRGGRVKDLPGVRYKIIRGALDAEGVANRRQ 112
>sp|A0M5A2|RS12_GRAFK 30S ribosomal protein S12 OS=Gramella forsetii (strain KT0803)
GN=rpsL PE=3 SV=1
Length = 124
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 40/56 (71%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
GKE+ AYIPGEGHNLQEH+IVL + GRVKDLPGV+ VRG D V +TQ
Sbjct: 57 LTNGKEVNAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIVRGALDTAGVEGRTQ 112
>sp|Q6ACY7|RS12_LEIXX 30S ribosomal protein S12 OS=Leifsonia xyli subsp. xyli (strain
CTCB07) GN=rpsL PE=3 SV=1
Length = 124
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 40/56 (71%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
+ G E+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ K VRG D V + Q
Sbjct: 57 LSNGTEVTAYIPGEGHNLQEHSMVLVRGGRVKDLPGVRYKIVRGALDTQAVKNRKQ 112
>sp|O35680|RT12_MOUSE 28S ribosomal protein S12, mitochondrial OS=Mus musculus GN=Mrps12
PE=2 SV=1
Length = 139
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 41/54 (75%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKK 75
+ GKE V +IPGEGH LQEH++VL + GR +DLPGVK+K VRG YD HV KK
Sbjct: 85 LSTGKEAVCFIPGEGHTLQEHHVVLVEGGRTQDLPGVKLKVVRGKYDCGHVQKK 138
>sp|A5FMY5|RS12_FLAJ1 30S ribosomal protein S12 OS=Flavobacterium johnsoniae (strain ATCC
17061 / DSM 2064 / UW101) GN=rpsL PE=3 SV=1
Length = 127
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 39/56 (69%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
G E+ AYIPGEGHNLQEH+IVL + GRVKDLPGV+ VRG D V +TQ
Sbjct: 57 LTNGNEVNAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIVRGALDTSGVAGRTQ 112
>sp|A6GZA3|RS12_FLAPJ 30S ribosomal protein S12 OS=Flavobacterium psychrophilum (strain
JIP02/86 / ATCC 49511) GN=rpsL PE=3 SV=1
Length = 127
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 39/56 (69%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
G E+ AYIPGEGHNLQEH+IVL + GRVKDLPGV+ VRG D V +TQ
Sbjct: 57 LTNGNEVNAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIVRGALDTSGVAGRTQ 112
>sp|Q2S3R9|RS12_SALRD 30S ribosomal protein S12 OS=Salinibacter ruber (strain DSM 13855 /
M31) GN=rpsL PE=3 SV=2
Length = 124
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 39/56 (69%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
G E+ AYIPGEGHNLQEH+IVL + GRVKDLPGVK VRG D V ++ Q
Sbjct: 57 LTNGNEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGALDTAGVEERRQ 112
>sp|P17293|RS12_THETH 30S ribosomal protein S12 OS=Thermus thermophilus GN=rpsL PE=1 SV=3
Length = 132
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 38/51 (74%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHV 72
G E+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ VRGVYD V
Sbjct: 57 LTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGV 107
>sp|Q5SHN3|RS12_THET8 30S ribosomal protein S12 OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=rpsL PE=1 SV=3
Length = 132
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 38/51 (74%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHV 72
G E+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ VRGVYD V
Sbjct: 57 LTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGV 107
>sp|P61941|RS12_THET2 30S ribosomal protein S12 OS=Thermus thermophilus (strain HB27 /
ATCC BAA-163 / DSM 7039) GN=rpsL PE=1 SV=2
Length = 132
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 38/51 (74%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHV 72
G E+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ VRGVYD V
Sbjct: 57 LTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGV 107
>sp|P60098|RT12_WHEAT Ribosomal protein S12, mitochondrial OS=Triticum aestivum GN=RPS12
PE=2 SV=1
Length = 125
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 27 EMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDL 69
++ AYIPGEGHNLQEH+IVL + GRVKDLPGVK C+RGV DL
Sbjct: 62 DIFAYIPGEGHNLQEHSIVLVRGGRVKDLPGVKFHCIRGVKDL 104
>sp|P60099|RT12_MAIZE Ribosomal protein S12, mitochondrial OS=Zea mays GN=RPS12 PE=2 SV=1
Length = 125
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 27 EMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDL 69
++ AYIPGEGHNLQEH+IVL + GRVKDLPGVK C+RGV DL
Sbjct: 62 DIFAYIPGEGHNLQEHSIVLVRGGRVKDLPGVKFHCIRGVKDL 104
>sp|Q01607|RT12_OENEH 40S ribosomal protein S12, mitochondrial OS=Oenothera elata subsp.
hookeri GN=RPS12 PE=2 SV=1
Length = 188
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 46/65 (70%), Gaps = 6/65 (9%)
Query: 11 RPPRQP--LLGK----PFAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVR 64
R P++P LGK + ++ AYIPGEGHNLQEH++VL + GRVKDLPGVK C+R
Sbjct: 103 RTPKKPNSALGKIAKVRLSNRNDVFAYIPGEGHNLQEHSMVLVRGGRVKDLPGVKFHCIR 162
Query: 65 GVYDL 69
GV DL
Sbjct: 163 GVKDL 167
>sp|Q96033|RT12_HELAN Ribosomal protein S12, mitochondrial OS=Helianthus annuus GN=RPS12
PE=2 SV=1
Length = 125
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 27 EMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDL 69
++ AYIPGEGHNLQEH+IVL + GRVKDLPGVK C+RGV DL
Sbjct: 62 DIFAYIPGEGHNLQEHSIVLIRGGRVKDLPGVKFHCIRGVKDL 104
>sp|Q8EX21|RS12_MYCPE 30S ribosomal protein S12 OS=Mycoplasma penetrans (strain HF-2)
GN=rpsL PE=3 SV=1
Length = 140
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 41/60 (68%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQLTPG 81
G E++AYIPGEGHNLQEH++VL + GRVKDLPGV+ VRG D V K+ Q G
Sbjct: 70 LTNGYEVLAYIPGEGHNLQEHSVVLIEGGRVKDLPGVRYHIVRGTLDTSGVEKRRQQRSG 129
>sp|B3PMF1|RS12_MYCA5 30S ribosomal protein S12 OS=Mycoplasma arthritidis (strain
158L3-1) GN=rpsL PE=3 SV=1
Length = 138
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
+ G+E+ AYIPGEGHNLQEH++VL + G+VKDLPGV+ VRG D V K+ Q
Sbjct: 70 LSNGQEVTAYIPGEGHNLQEHSVVLIRGGKVKDLPGVRYTIVRGTQDAAGVDKRKQ 125
>sp|B3E073|RS12_METI4 30S ribosomal protein S12 OS=Methylacidiphilum infernorum (isolate
V4) GN=rpsL PE=3 SV=1
Length = 141
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 38/52 (73%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVV 73
GKE++AYIPGEGHNLQEH+IVL + GRVKDLPGV+ +RG D V
Sbjct: 57 LTNGKEVIAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIIRGTLDASGAV 108
>sp|A6LEJ5|RS12_PARD8 30S ribosomal protein S12 OS=Parabacteroides distasonis (strain
ATCC 8503 / DSM 20701 / NCTC 11152) GN=rpsL PE=3 SV=1
Length = 136
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 40/56 (71%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
GKE+ +YIPGEGHNLQEH+IVL + GRVKDLPGV+ VRG D V +TQ
Sbjct: 57 LTNGKEVNSYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIVRGTLDTAGVNGRTQ 112
>sp|Q8VMU2|RS12_MYCMS 30S ribosomal protein S12 OS=Mycoplasma mycoides subsp. mycoides SC
(strain PG1) GN=rpsL PE=3 SV=2
Length = 139
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 40/56 (71%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
G E+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ +RG D V K++Q
Sbjct: 70 LTNGMEVNAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHVIRGTLDTQGVAKRSQ 125
>sp|Q2SSX1|RS12_MYCCT 30S ribosomal protein S12 OS=Mycoplasma capricolum subsp.
capricolum (strain California kid / ATCC 27343 / NCTC
10154) GN=rpsL PE=3 SV=2
Length = 139
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 40/56 (71%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
G E+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ +RG D V K++Q
Sbjct: 70 LTNGMEVNAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHVIRGTLDTQGVAKRSQ 125
>sp|Q83FN9|RS12_TROWT 30S ribosomal protein S12 OS=Tropheryma whipplei (strain Twist)
GN=rpsL PE=3 SV=1
Length = 124
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 39/56 (69%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
+ G E+ YIPGEGHNLQEH+IVL + GRVKDLPGV+ K VRG D V + Q
Sbjct: 57 LSNGTEVTVYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKVVRGALDAQAVKDRKQ 112
>sp|Q83HC7|RS12_TROW8 30S ribosomal protein S12 OS=Tropheryma whipplei (strain TW08/27)
GN=rpsL PE=3 SV=1
Length = 124
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 39/56 (69%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
+ G E+ YIPGEGHNLQEH+IVL + GRVKDLPGV+ K VRG D V + Q
Sbjct: 57 LSNGTEVTVYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKVVRGALDAQAVKDRKQ 112
>sp|A4FPN0|RS12_SACEN 30S ribosomal protein S12 OS=Saccharopolyspora erythraea (strain
NRRL 23338) GN=rpsL PE=3 SV=1
Length = 124
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 39/56 (69%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
G E+ AYIPGEGHNLQEH+IVL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 57 LTSGIEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGSADTQGVKNRKQ 112
>sp|Q6KHS3|RS12_MYCMO 30S ribosomal protein S12 OS=Mycoplasma mobile (strain ATCC 43663 /
163K / NCTC 11711) GN=rpsL PE=3 SV=1
Length = 139
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 39/56 (69%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
+ G E+ AYIPGEGHN+QEH++VL + GRVKDLPGV+ VRG D V + Q
Sbjct: 70 LSNGFEVTAYIPGEGHNIQEHSVVLIRGGRVKDLPGVRYTIVRGTQDAAGVANRNQ 125
>sp|Q7NAV1|RS12_MYCGA 30S ribosomal protein S12 OS=Mycoplasma gallisepticum (strain R(low
/ passage 15 / clone 2)) GN=rpsL PE=3 SV=2
Length = 141
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 40/56 (71%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
G E++AYIPGEGHNLQEH++VL + GRVKDLPGV+ VRG D V K+ Q
Sbjct: 70 LTNGMEVLAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGTLDTTGVDKRRQ 125
>sp|P26871|RT12_MARPO Ribosomal protein S12, mitochondrial OS=Marchantia polymorpha
GN=RPS12 PE=3 SV=2
Length = 126
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 27 EMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDL 69
E++AYIPGEGHNLQEH++V+ + GRV+DLPGVK C+RGV DL
Sbjct: 62 EIIAYIPGEGHNLQEHSVVMVRGGRVQDLPGVKYHCIRGVKDL 104
>sp|B4U739|RS12_HYDS0 30S ribosomal protein S12 OS=Hydrogenobaculum sp. (strain Y04AAS1)
GN=rpsL PE=3 SV=1
Length = 135
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
+ G E+ YIPGEGHNLQEH+IVL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 57 LSNGIEVTCYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGALDTAGVANRRQ 112
>sp|Q7MTK9|RS12_PORGI 30S ribosomal protein S12 OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=rpsL PE=3 SV=1
Length = 134
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 39/56 (69%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
KE+ AYIPGEGHNLQEH+IVL + GRVKDLPGV+ VRG D V +TQ
Sbjct: 57 LTNSKEVNAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIVRGTLDTAGVNGRTQ 112
>sp|B2RLZ6|RS12_PORG3 30S ribosomal protein S12 OS=Porphyromonas gingivalis (strain ATCC
33277 / DSM 20709 / JCM 12257) GN=rpsL PE=3 SV=1
Length = 134
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 39/56 (69%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
KE+ AYIPGEGHNLQEH+IVL + GRVKDLPGV+ VRG D V +TQ
Sbjct: 57 LTNSKEVNAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIVRGTLDTAGVNGRTQ 112
>sp|A9H3R9|RS12_GLUDA 30S ribosomal protein S12 OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=rpsL PE=3 SV=1
Length = 123
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
G E+V+YIPGEGHNLQEH++VL + GRVKDLPGV+ +RGV D + K+ Q
Sbjct: 57 LTNGYEVVSYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHILRGVLDTQGIAKRRQ 112
>sp|Q0BUQ4|RS12_GRABC 30S ribosomal protein S12 OS=Granulibacter bethesdensis (strain
ATCC BAA-1260 / CGDNIH1) GN=rpsL PE=3 SV=1
Length = 123
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
G E+V+YIPGEGHNLQEH++VL + GRVKDLPGV+ +RGV D + K+ Q
Sbjct: 57 LTNGYEVVSYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHILRGVLDTQGIAKRRQ 112
>sp|A6KYJ9|RS12_BACV8 30S ribosomal protein S12 OS=Bacteroides vulgatus (strain ATCC 8482
/ DSM 1447 / NCTC 11154) GN=rpsL PE=3 SV=1
Length = 137
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 39/56 (69%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
KE+ +YIPGEGHNLQEH+IVL + GRVKDLPGV+ VRG D V +TQ
Sbjct: 57 LTNSKEVNSYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIVRGTLDTAGVAGRTQ 112
>sp|P0A4A5|RS12_STRLI 30S ribosomal protein S12 OS=Streptomyces lividans GN=rpsL PE=1
SV=1
Length = 123
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 39/56 (69%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
G E+ AYIPGEGHNLQEH+IVL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 57 LTSGIEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGSLDTQGVKNRKQ 112
>sp|B1W419|RS12_STRGG 30S ribosomal protein S12 OS=Streptomyces griseus subsp. griseus
(strain JCM 4626 / NBRC 13350) GN=rpsL PE=3 SV=1
Length = 123
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 39/56 (69%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
G E+ AYIPGEGHNLQEH+IVL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 57 LTSGIEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGSLDTQGVKNRKQ 112
>sp|P0A4A6|RS12_STRFL 30S ribosomal protein S12 OS=Streptomyces filamentosus GN=rpsL PE=1
SV=1
Length = 123
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 39/56 (69%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
G E+ AYIPGEGHNLQEH+IVL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 57 LTSGIEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGSLDTQGVKNRKQ 112
>sp|P0A4A3|RS12_STRCO 30S ribosomal protein S12 OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=rpsL PE=1 SV=1
Length = 123
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 39/56 (69%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
G E+ AYIPGEGHNLQEH+IVL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 57 LTSGIEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGSLDTQGVKNRKQ 112
>sp|P0A4A4|RS12_STRAW 30S ribosomal protein S12 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=rpsL PE=1 SV=1
Length = 123
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 39/56 (69%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
G E+ AYIPGEGHNLQEH+IVL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 57 LTSGIEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGSLDTQGVKNRKQ 112
>sp|A9KRZ1|RS12_CLOPH 30S ribosomal protein S12 OS=Clostridium phytofermentans (strain
ATCC 700394 / DSM 18823 / ISDg) GN=rpsL PE=3 SV=1
Length = 140
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 39/56 (69%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
+ G E+ +YIPGEGHNLQEH++VL + GRVKDLPG + VRG D V K+ Q
Sbjct: 70 LSNGIEVTSYIPGEGHNLQEHSVVLIRGGRVKDLPGTRYHIVRGTLDTAGVAKRRQ 125
>sp|A5FZW9|RS12_ACICJ 30S ribosomal protein S12 OS=Acidiphilium cryptum (strain JF-5)
GN=rpsL PE=3 SV=1
Length = 123
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
G E+V+YIPGEGHNLQEH++VL + GRVKDLPGV+ +RGV D + K+ Q
Sbjct: 57 LTNGYEVVSYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHILRGVLDTQGIAKRRQ 112
>sp|O15235|RT12_HUMAN 28S ribosomal protein S12, mitochondrial OS=Homo sapiens GN=MRPS12
PE=1 SV=1
Length = 138
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 39/54 (72%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKK 75
+ G+E V +IPGEGH LQEH IVL + GR +DLPGVK+ VRG YD HV KK
Sbjct: 85 LSTGREAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKLTVVRGKYDCGHVQKK 138
>sp|O70089|RS12_AQUAE 30S ribosomal protein S12 OS=Aquifex aeolicus (strain VF5) GN=rpsL1
PE=3 SV=1
Length = 128
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 40/56 (71%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
+ G E+ AYIPGEGHNLQEH+IVL + GRVKDLPGV+ K +RG D V + Q
Sbjct: 57 LSNGIEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGALDAAGVEGRRQ 112
>sp|Q8RIL9|RS12_FUSNN 30S ribosomal protein S12 OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=rpsL PE=3 SV=1
Length = 122
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 38/56 (67%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
G E+ YIPGEGHNLQEH+IVL + GR KDLPGV+ K +RG D V K+ Q
Sbjct: 57 LTNGIEVTCYIPGEGHNLQEHSIVLVRGGRTKDLPGVRYKIIRGALDTAGVAKRKQ 112
>sp|Q5RB32|RT12_PONAB 28S ribosomal protein S12, mitochondrial OS=Pongo abelii GN=MRPS12
PE=2 SV=1
Length = 139
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 39/54 (72%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKK 75
+ G+E V +IPGEGH LQEH IVL + GR +DLPGVK+ VRG YD HV KK
Sbjct: 86 LSTGQEAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKLTVVRGKYDCGHVQKK 139
>sp|A5USJ4|RS12_ROSS1 30S ribosomal protein S12 OS=Roseiflexus sp. (strain RS-1) GN=rpsL
PE=3 SV=1
Length = 144
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
+ G E+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ VRG D V + Q
Sbjct: 71 LSNGMEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGTLDAQGVANRKQ 126
>sp|A7NR68|RS12_ROSCS 30S ribosomal protein S12 OS=Roseiflexus castenholzii (strain DSM
13941 / HLO8) GN=rpsL PE=3 SV=1
Length = 144
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 22 FAKGKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
+ G E+ AYIPGEGHNLQEH++VL + GRVKDLPGV+ VRG D V + Q
Sbjct: 71 LSNGMEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGTLDAQGVANRKQ 126
>sp|C5CC69|RS12_MICLC 30S ribosomal protein S12 OS=Micrococcus luteus (strain ATCC 4698 /
DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC
2665 / VKM Ac-2230) GN=rpsL PE=3 SV=1
Length = 124
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 39/53 (73%)
Query: 25 GKEMVAYIPGEGHNLQEHNIVLCKVGRVKDLPGVKIKCVRGVYDLPHVVKKTQ 77
G E+ AYIPGEGHNLQEH+IVL + GRVKDLPGV+ K VRG D V + Q
Sbjct: 60 GIEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIVRGALDTQGVKNRGQ 112
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.143 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,459,293
Number of Sequences: 539616
Number of extensions: 1351430
Number of successful extensions: 3548
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2601
Number of HSP's gapped (non-prelim): 952
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)