Query psy16455
Match_columns 82
No_of_seqs 105 out of 495
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 21:45:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqe_L 30S ribosomal protein S 100.0 2.3E-37 7.7E-42 218.8 6.5 78 2-79 11-117 (135)
2 2xzm_L 40S ribosomal protein S 99.9 2.8E-25 9.5E-30 158.1 6.0 52 15-66 40-127 (142)
3 3u5c_X RP37, S28, YS14, 40S ri 99.9 2.9E-25 9.8E-30 158.4 5.4 54 13-66 39-128 (145)
4 3j20_N 30S ribosomal protein S 99.9 5.9E-25 2E-29 157.1 4.9 54 13-66 40-130 (147)
5 2ju4_A GMP-PDE gamma, retinal 44.8 4.8 0.00016 26.3 0.1 34 3-36 24-72 (87)
6 2dgy_A MGC11102 protein; EIF-1 26.8 76 0.0026 20.7 3.7 25 25-49 37-64 (111)
7 1d7q_A Translation initiation 25.9 1.6E+02 0.0055 20.2 5.4 25 25-49 53-80 (143)
8 1jgn_B PAIP2, polyadenylate-bi 25.3 16 0.00054 19.1 0.1 8 54-61 13-20 (26)
9 3q9t_A Choline dehydrogenase a 18.6 28 0.00095 27.6 0.3 24 25-48 290-313 (577)
10 3fim_B ARYL-alcohol oxidase; A 18.4 29 0.00099 27.5 0.3 23 25-47 296-318 (566)
No 1
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Probab=100.00 E-value=2.3e-37 Score=218.78 Aligned_cols=78 Identities=50% Similarity=0.821 Sum_probs=69.8
Q ss_pred CCCCCCCCCCCC-CCCCCCCCccC----------------------------CCEEEEEecCCCCCCCcccEEEEecCCc
Q psy16455 2 HMKGPHYKKRPP-RQPLLGKPFAK----------------------------GKEMVAYIPGEGHNLQEHNIVLCKVGRV 52 (82)
Q Consensus 2 ~~~g~~~~~~~~-~~~L~~~Pq~k----------------------------gk~v~AyIPG~Ghnlqehs~VLVrGGr~ 52 (82)
+|.++.++++++ .++|++|||++ |++||||||||||||||||+|||||||+
T Consensus 11 ~r~~r~~~~~k~k~~~l~g~Pq~kGv~l~v~~~~pKKPNSA~RK~arVrL~ngk~VtAyIPG~GhnlqEhs~VLVrGgrv 90 (135)
T 2vqe_L 11 VRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRV 90 (135)
T ss_dssp HHTCCCCCCCCCSCCCSSSCSEEEEEESCCCEECCCTTCCCCEECCEEEETTSCEEEEECCSSCCCCCTTCEEEEEECCC
T ss_pred hccCCCCCCccCcCCcccCCCCcCeEEEEEEecCCCCCchhheeEEEEEcCCCCEEEEEcCCCCCccCcCCEEEEcCCCc
Confidence 456655554444 46999999999 9999999999999999999999999999
Q ss_pred CCCCCceEEEeeeecCCcccccccccC
Q psy16455 53 KDLPGVKIKCVRGVYDLPHVVKKTQLT 79 (82)
Q Consensus 53 ~DLPGVkykvVrG~~D~~~v~~R~~~~ 79 (82)
+|||||+|+||||+|||++|.+|+++.
T Consensus 91 ~DlPGVrykvVrG~lD~~gv~~R~~~R 117 (135)
T 2vqe_L 91 KDLPGVRYHIVRGVYDAAGVKDRKKSR 117 (135)
T ss_dssp TTSTTCCEEECTTSTTSCCCTTCCSSG
T ss_pred CCCCCeeEEEEeEeecCcccccccccc
Confidence 999999999999999999999998864
No 2
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L 3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Probab=99.91 E-value=2.8e-25 Score=158.08 Aligned_cols=52 Identities=37% Similarity=0.593 Sum_probs=49.6
Q ss_pred CCCCCCCccC-----------------------------CCEEEEEecCCCC--CCCcccEEEEec-----CCcCCCCCc
Q psy16455 15 QPLLGKPFAK-----------------------------GKEMVAYIPGEGH--NLQEHNIVLCKV-----GRVKDLPGV 58 (82)
Q Consensus 15 ~~L~~~Pq~k-----------------------------gk~v~AyIPG~Gh--nlqehs~VLVrG-----Gr~~DLPGV 58 (82)
+||+|+||+| |++|||||||||| ||||||+|||+| |+++|||||
T Consensus 40 ~pl~g~pq~kGIvl~~~~~~pKkPNSA~RK~arVqL~kNgk~vtAyIPg~G~l~~lqEh~~VLVrG~G~~ggrv~DlPGV 119 (142)
T 2xzm_L 40 NPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGV 119 (142)
T ss_dssp STTTTCSEEEEEEEEEEEEECCTTCCCEEEEEEEEETTTCCEEEEECCSSSGGGTCCTTCEEEEEESSSSSSCCTTCSSC
T ss_pred CcccCCCccceEEEEEEecccCCCCcccccEEEEEEecCCeEEEEEeCCCCcccccccCCEEEEEecccCCCccCCCCCc
Confidence 8999999999 9999999999996 999999999999 899999999
Q ss_pred eEEEeeee
Q psy16455 59 KIKCVRGV 66 (82)
Q Consensus 59 kykvVrG~ 66 (82)
+|+|||+.
T Consensus 120 rykvVrv~ 127 (142)
T 2xzm_L 120 RFKVVCVK 127 (142)
T ss_dssp CEEEEEES
T ss_pred eEEEEEEC
Confidence 99999963
No 3
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3j2k_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L
Probab=99.91 E-value=2.9e-25 Score=158.42 Aligned_cols=54 Identities=33% Similarity=0.567 Sum_probs=50.4
Q ss_pred CCCCCCCCCccC-----------------------------CCEEEEEecCCCC--CCCcccEEEEec-----CCcCCCC
Q psy16455 13 PRQPLLGKPFAK-----------------------------GKEMVAYIPGEGH--NLQEHNIVLCKV-----GRVKDLP 56 (82)
Q Consensus 13 ~~~~L~~~Pq~k-----------------------------gk~v~AyIPG~Gh--nlqehs~VLVrG-----Gr~~DLP 56 (82)
+++||+++||+| |++|||||||||| ||||||+|||+| |+++|||
T Consensus 39 K~~~l~g~pq~kGivl~~~~~~pKkPNSA~RK~arV~L~kngk~vtAyIPg~G~l~~lqEh~~VLV~G~G~~Gg~v~DlP 118 (145)
T 3u5c_X 39 KSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIP 118 (145)
T ss_dssp HSSSSCSSSEEEEEEEEEEBCBCCTTCCCBCCEEEEEETTTCCEEEEECCSSSCGGGCCTTCEEEEECCSSSSSCCSSST
T ss_pred ccCccCCCCccCeEEEEEeecccCCCCccceeEEEEEEccCCCEEEEEeCCCCccccCCcCCEEEEEeccccCCccCCCC
Confidence 357899999998 9999999999997 999999999999 7899999
Q ss_pred CceEEEeeee
Q psy16455 57 GVKIKCVRGV 66 (82)
Q Consensus 57 GVkykvVrG~ 66 (82)
||+|+|||+.
T Consensus 119 GVrykvVrv~ 128 (145)
T 3u5c_X 119 GVRFKVVKVS 128 (145)
T ss_dssp TCCEEEEEST
T ss_pred ceeEEEEEEC
Confidence 9999999975
No 4
>3j20_N 30S ribosomal protein S12P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.90 E-value=5.9e-25 Score=157.10 Aligned_cols=54 Identities=37% Similarity=0.704 Sum_probs=50.2
Q ss_pred CCCCCCCCCccC-----------------------------CCEEEEEecCCCC--CCCcccEEEEec------CCcCCC
Q psy16455 13 PRQPLLGKPFAK-----------------------------GKEMVAYIPGEGH--NLQEHNIVLCKV------GRVKDL 55 (82)
Q Consensus 13 ~~~~L~~~Pq~k-----------------------------gk~v~AyIPG~Gh--nlqehs~VLVrG------Gr~~DL 55 (82)
+++||+++||++ |++|||||||||| ||||||+|||+| |+++||
T Consensus 40 K~~~l~g~pq~kGIvl~~~~~~pKkPNSA~RK~arV~L~kngk~vtAyIPg~Ghln~lqEh~~VLV~G~gg~~gg~v~Dl 119 (147)
T 3j20_N 40 KSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDI 119 (147)
T ss_dssp HHSSSTTCSCEEEEEEEEEEEECCSSCCCEEEEEEEEETTTCCEEEEECCSSSGGGTCCTTCEEEEEECSCTTSCCCSSC
T ss_pred ccchhhcCCccceEEEEEeecCCCCCCceeeeEEEEEEccCCcEEEEEcCCchhhcccccCCEEEEeeccCcCCCccCCC
Confidence 357999999999 9999999999998 999999999999 669999
Q ss_pred CCceEEEeeee
Q psy16455 56 PGVKIKCVRGV 66 (82)
Q Consensus 56 PGVkykvVrG~ 66 (82)
|||+|+||+..
T Consensus 120 PGVrykvVkv~ 130 (147)
T 3j20_N 120 PGIRYKVVKVN 130 (147)
T ss_dssp SSCCEEEEEET
T ss_pred CceeEEEEEEC
Confidence 99999999975
No 5
>2ju4_A GMP-PDE gamma, retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit gamma...; intrinsic disordered protein; HET: RCY; NMR {Bos taurus}
Probab=44.78 E-value=4.8 Score=26.32 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=22.8
Q ss_pred CCCCCCCCCCCCCCCCCCCccC---------------CCEEEEEecCCC
Q psy16455 3 MKGPHYKKRPPRQPLLGKPFAK---------------GKEMVAYIPGEG 36 (82)
Q Consensus 3 ~~g~~~~~~~~~~~L~~~Pq~k---------------gk~v~AyIPG~G 36 (82)
|+|||+=|.+.+..+...|-+| |..||..+|.|-
T Consensus 24 rkGPPKFKQR~TRqFKSKpPKkGvkGfgddipgmeglgtditvicpwea 72 (87)
T 2ju4_A 24 RKGPPKCKQRQTRQCKSKPPKKGVQGCGDDIPGMEGCGTDITVICPWEA 72 (87)
T ss_dssp SSSSCCCSSCSSSSCCSSCSCSSSSCCCCSSCSSSSCSHHHHTCCTTTT
T ss_pred CCCCCccchhhccccccCCCCCCcccccccccccccccCCeeEEcchhh
Confidence 6776665555555666666666 666777778776
No 6
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.76 E-value=76 Score=20.73 Aligned_cols=25 Identities=8% Similarity=0.292 Sum_probs=20.6
Q ss_pred CCEEEEEecCCC---CCCCcccEEEEec
Q psy16455 25 GKEMVAYIPGEG---HNLQEHNIVLCKV 49 (82)
Q Consensus 25 gk~v~AyIPG~G---hnlqehs~VLVrG 49 (82)
|.+++|+|||-= =.+-+.|.|+|+=
T Consensus 37 G~~~la~i~GK~Rk~IwI~~GD~VlVe~ 64 (111)
T 2dgy_A 37 GQRFLVSMPSKYRKNIWIKRGDFLIVDP 64 (111)
T ss_dssp SCEEEEECCTTCCSCCCCCSSCEEEEEE
T ss_pred CCEEEEEechhhcccEEEcCCCEEEEEe
Confidence 999999999865 3367889999974
No 7
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=25.87 E-value=1.6e+02 Score=20.15 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=20.3
Q ss_pred CCEEEEEecCCC---CCCCcccEEEEec
Q psy16455 25 GKEMVAYIPGEG---HNLQEHNIVLCKV 49 (82)
Q Consensus 25 gk~v~AyIPG~G---hnlqehs~VLVrG 49 (82)
|.+++|+|||-= -.+-+-|.|||+=
T Consensus 53 G~~~La~I~GKmRk~IwI~~GD~VlVe~ 80 (143)
T 1d7q_A 53 GVKRLCHIRGKLRKKVWINTSDIILVGL 80 (143)
T ss_dssp TEEEEEECCSGGGGSCCCCTTCEEEEEC
T ss_pred CCEEEEEecccceeeEEecCCCEEEEee
Confidence 999999999864 4567888999874
No 8
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=25.34 E-value=16 Score=19.08 Aligned_cols=8 Identities=50% Similarity=0.679 Sum_probs=5.5
Q ss_pred CCCCceEE
Q psy16455 54 DLPGVKIK 61 (82)
Q Consensus 54 DLPGVkyk 61 (82)
=.|||+|-
T Consensus 13 f~pgvkyg 20 (26)
T 1jgn_B 13 FVPGVKYG 20 (26)
T ss_dssp CCTTSCTT
T ss_pred cCCCceec
Confidence 35888874
No 9
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=18.61 E-value=28 Score=27.64 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=19.7
Q ss_pred CCEEEEEecCCCCCCCcccEEEEe
Q psy16455 25 GKEMVAYIPGEGHNLQEHNIVLCK 48 (82)
Q Consensus 25 gk~v~AyIPG~Ghnlqehs~VLVr 48 (82)
|=.|.+=.||.|.|||+|-.+.+.
T Consensus 290 GI~vv~dlP~VG~nl~DH~~~~~~ 313 (577)
T 3q9t_A 290 GINTIVDSRHVGQNLMDHPGVPFV 313 (577)
T ss_dssp TCCCSEECTTTTEEEBCCEEEEEE
T ss_pred CCCeeccCchhhhhhhcCcceeEE
Confidence 556778899999999999877654
No 10
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=18.39 E-value=29 Score=27.48 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=19.0
Q ss_pred CCEEEEEecCCCCCCCcccEEEE
Q psy16455 25 GKEMVAYIPGEGHNLQEHNIVLC 47 (82)
Q Consensus 25 gk~v~AyIPG~Ghnlqehs~VLV 47 (82)
|=.|.+=.||.|.|||+|-.+.+
T Consensus 296 gI~vv~dlPgVG~NLqDH~~~~~ 318 (566)
T 3fim_B 296 GIDTIVNNPSVGRNLSDHLLLPA 318 (566)
T ss_dssp TCCCSEECTTTTCSBBCCEEECC
T ss_pred CCCceecCcchhhhhhcCccceE
Confidence 66677889999999999987644
Done!